BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027649
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
           Complex With Fenoprofen
 pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
           Complex With Fenoprofen
          Length = 370

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 173 SVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETS 206
           S+  PV  VKPEYL     GT A +  K+ G  S
Sbjct: 137 SIATPVPSVKPEYLTLLVSGTTAYISLKELGGLS 170


>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
           Complex With Diclofenac
 pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
           Complex With Diclofenac
          Length = 341

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 173 SVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETS 206
           S+  PV  VKPEYL     GT A +  K+ G  S
Sbjct: 108 SIATPVPSVKPEYLTLLVSGTTAYISLKELGGLS 141


>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
 pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
 pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
           Complex With Raloxifene
 pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
           Complex With Raloxifene
          Length = 362

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 173 SVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETS 206
           S+  PV  VKPEYL     GT A +  K+ G  S
Sbjct: 129 SIATPVPSVKPEYLTLLVSGTTAYISLKELGGLS 162


>pdb|2P26|A Chain A, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
           Beta2 Subunit
          Length = 280

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 23  SSLPSSKVDFAGFPSEITPK------WPGMAID-NCSMRQSKLFSRISGDYKLSPNPISH 75
           +SL  ++ D  G   +++P+       PG A   N + R++KL SR+  D+   P+ +  
Sbjct: 60  TSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKLSSRVFLDHNALPDTLKV 119

Query: 76  EVESFLLNAI 85
             +SF  N +
Sbjct: 120 TYDSFCSNGV 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,197,343
Number of Sequences: 62578
Number of extensions: 236436
Number of successful extensions: 639
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 6
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)