Query 027649
Match_columns 220
No_of_seqs 131 out of 528
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxo_A Cell division topologic 99.9 2.6E-29 9E-34 193.8 -2.5 86 87-185 1-88 (95)
2 3r9j_C MINE, cell division top 99.9 5.2E-25 1.8E-29 164.6 2.0 69 110-180 2-72 (77)
3 3ku7_A MINE, cell division top 99.9 4.4E-25 1.5E-29 166.1 -3.9 77 86-180 3-80 (80)
4 3v3e_B Nuclear receptor subfam 66.0 3.2 0.00011 35.1 2.6 31 121-151 160-191 (257)
5 2opa_A Probable tautomerase YW 52.7 17 0.00058 23.2 3.8 36 129-165 10-45 (61)
6 1otf_A 4-oxalocrotonate tautom 52.7 17 0.00058 23.1 3.8 36 129-165 10-45 (62)
7 3gyt_A Nuclear hormone recepto 51.4 8.4 0.00029 32.7 2.7 27 125-151 161-191 (244)
8 3abf_A 4-oxalocrotonate tautom 47.6 28 0.00094 22.3 4.2 37 129-166 11-47 (64)
9 3ry0_A Putative tautomerase; o 46.9 22 0.00077 23.4 3.8 36 129-165 10-45 (65)
10 3mb2_A 4-oxalocrotonate tautom 45.6 28 0.00094 23.5 4.1 52 129-182 11-62 (72)
11 3m20_A 4-oxalocrotonate tautom 42.5 31 0.001 22.7 3.9 36 129-165 9-44 (62)
12 1pdu_A DHR38, nuclear hormone 42.3 14 0.00048 30.7 2.6 32 121-152 155-187 (244)
13 2x4k_A 4-oxalocrotonate tautom 42.1 31 0.0011 21.6 3.8 36 129-165 13-48 (63)
14 3dzy_D Peroxisome proliferator 41.4 14 0.00049 33.4 2.7 32 122-153 333-366 (419)
15 2nxx_E Ecdysone receptor (ECR, 40.0 16 0.00056 30.1 2.7 43 110-153 151-194 (248)
16 3ej9_A Alpha-subunit of trans- 39.0 33 0.0011 23.7 3.7 37 129-166 11-47 (76)
17 3m21_A Probable tautomerase HP 38.3 33 0.0011 22.7 3.6 36 129-165 13-48 (67)
18 2ahq_A Sigma-54, RNA polymeras 37.2 53 0.0018 23.8 4.7 39 98-137 5-45 (76)
19 1ovl_A Orphan nuclear receptor 36.9 19 0.00066 30.0 2.6 32 121-152 182-214 (271)
20 2r40_D Ecdysone receptor, 20-h 36.3 21 0.00071 29.9 2.8 33 121-153 177-210 (266)
21 2aal_A Malonate semialdehyde d 34.2 50 0.0017 24.6 4.4 39 127-166 73-111 (131)
22 2l2l_B Methyl-CPG-binding doma 33.6 24 0.00083 22.8 2.1 17 112-128 19-35 (36)
23 1z5x_E Ecdysone receptor ligan 33.4 24 0.00081 30.8 2.7 33 121-153 225-258 (310)
24 3vi8_A Peroxisome proliferator 32.4 22 0.00076 30.2 2.3 42 110-153 176-220 (273)
25 1gyx_A YDCE, B1461, hypothetic 31.7 49 0.0017 22.5 3.6 37 129-166 10-47 (76)
26 1xvp_B Orphan nuclear receptor 30.9 28 0.00096 28.4 2.6 44 109-152 152-196 (246)
27 3c6v_A Probable tautomerase/de 30.7 53 0.0018 26.3 4.2 39 127-166 92-130 (161)
28 3cqv_A Nuclear receptor subfam 29.9 37 0.0013 26.8 3.1 44 109-152 118-162 (199)
29 3l0l_A Nuclear receptor ROR-ga 29.8 31 0.001 28.6 2.7 45 109-153 153-198 (248)
30 3mlc_A FG41 malonate semialdeh 29.1 75 0.0026 24.4 4.7 35 129-165 75-109 (136)
31 3up3_A Acedaf-12; ligand bindi 27.8 33 0.0011 28.6 2.6 32 121-152 157-192 (243)
32 3u9q_A Peroxisome proliferator 27.8 37 0.0013 28.7 2.9 31 123-153 186-217 (269)
33 3b0t_A Vitamin D3 receptor; nu 27.8 34 0.0012 28.1 2.6 43 110-152 157-200 (254)
34 1nq7_A Nuclear receptor ROR-be 27.5 36 0.0012 28.0 2.7 56 87-153 136-192 (244)
35 1imu_A Hypothetical protein HI 27.4 1.6E+02 0.0055 21.5 6.1 50 128-181 10-59 (107)
36 1use_A VAsp, vasodilator-stimu 26.9 46 0.0016 22.5 2.6 30 116-150 9-39 (45)
37 3p0u_A Nuclear receptor subfam 26.9 32 0.0011 28.5 2.3 44 110-153 141-185 (249)
38 1n83_A Nuclear receptor ROR-al 26.2 39 0.0013 28.5 2.7 45 109-153 162-207 (270)
39 3f5c_B Nuclear receptor subfam 26.0 39 0.0013 28.6 2.7 30 124-153 186-216 (268)
40 1mww_A Hypothetical protein HI 26.0 76 0.0026 23.4 4.1 36 129-165 69-104 (128)
41 1d0q_A DNA primase; zinc-bindi 25.9 32 0.0011 25.3 1.9 26 130-155 5-32 (103)
42 2o4j_A Vitamin D3 receptor; nu 24.8 42 0.0014 28.6 2.7 43 110-152 160-203 (292)
43 1fcy_A RAR-gamma-1, retinoic a 24.8 44 0.0015 27.2 2.7 43 110-152 143-186 (236)
44 2hc4_A Vitamin D receptor; alp 24.7 42 0.0014 28.8 2.8 28 125-152 218-246 (302)
45 3v26_X ORF3, ORF95, probable s 24.6 2.1E+02 0.007 20.9 6.9 50 128-181 10-59 (101)
46 3n00_A REV-ERBA-alpha; reverba 24.5 50 0.0017 27.4 3.1 44 110-153 164-208 (245)
47 3n4h_A Putative tautomerase; C 24.4 80 0.0028 24.0 4.1 37 128-165 71-107 (148)
48 3vhv_A Mineralocorticoid recep 24.4 43 0.0015 27.9 2.7 28 126-153 158-186 (260)
49 1hfo_A Migration inhibitory fa 24.2 86 0.003 22.4 4.0 37 129-166 66-102 (113)
50 3r1f_A ESX-1 secretion-associa 24.1 97 0.0033 23.7 4.5 68 83-156 2-77 (135)
51 1uiz_A MIF, macrophage migrati 24.0 89 0.0031 22.5 4.1 37 129-166 67-103 (115)
52 3tqm_A Ribosome-associated fac 23.6 1.8E+02 0.0061 20.7 5.6 50 128-181 10-59 (96)
53 2e2r_A Estrogen-related recept 23.3 56 0.0019 26.8 3.1 28 125-152 162-190 (244)
54 3ipq_A Oxysterols receptor LXR 23.3 50 0.0017 27.9 2.9 29 125-153 203-232 (283)
55 3ltx_A Estrogen receptor; cons 23.1 56 0.0019 26.8 3.1 44 110-153 136-180 (243)
56 1nrl_A Orphan nuclear receptor 22.9 50 0.0017 28.9 2.9 32 122-153 229-262 (316)
57 3cjw_A COUP transcription fact 22.4 51 0.0018 26.8 2.7 28 125-152 153-181 (244)
58 4fyl_A Ribosome hibernation pr 22.2 2.2E+02 0.0075 20.4 6.1 50 128-181 10-59 (95)
59 2os5_A Acemif; macrophage migr 22.1 1E+02 0.0035 22.4 4.1 37 129-166 67-103 (119)
60 3mf7_A CIS-3-chloroacrylic aci 21.8 99 0.0034 24.4 4.2 39 127-166 70-108 (149)
61 3kmr_A Retinoic acid receptor 21.5 54 0.0018 27.5 2.7 29 125-153 182-211 (266)
62 3k6p_A Steroid hormone recepto 21.4 64 0.0022 26.6 3.1 32 122-153 159-191 (248)
63 3mnp_A Glucocorticoid receptor 21.1 54 0.0018 27.4 2.6 28 126-153 160-188 (261)
64 2nxx_A Ultraspiracle (USP, NR2 20.9 58 0.002 26.4 2.7 28 125-152 152-180 (235)
65 2w31_A Globin; oxygen transpor 20.5 2.2E+02 0.0076 21.2 5.9 37 112-148 80-120 (162)
66 1g2n_A Ultraspiracle protein; 20.5 58 0.002 26.9 2.7 43 110-152 160-203 (264)
67 3vhu_A Mineralocorticoid recep 20.2 58 0.002 28.0 2.7 32 122-153 186-220 (294)
No 1
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=99.94 E-value=2.6e-29 Score=193.83 Aligned_cols=86 Identities=17% Similarity=0.354 Sum_probs=77.6
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEee
Q 027649 87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRC--AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVST 164 (220)
Q Consensus 87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~--~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~ 164 (220)
|+||++||+ ++++||++||||||+||+|||+ +++|++|++||+||++||+|||+||+++ |+|++++
T Consensus 1 M~l~~~f~~-----------kk~~Sa~vAKeRLqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~Id~~~-v~V~l~~ 68 (95)
T 2kxo_A 1 MSLIELLFG-----------RKQKTATVARDRLQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNVSLDN-IRISQEK 68 (95)
T ss_dssp CCHHHHHTC-----------SSCCCSCCSSEEEEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCCCTTS-EEEEEEE
T ss_pred CchHHHhcc-----------CCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheecchhh-eEEEEEe
Confidence 689998874 4568999999999999999998 5899999999999999999999999996 9999999
Q ss_pred CCCCceEEEEEEeccCcCCCc
Q 027649 165 DTDLGTIYSVTVPVRRVKPEY 185 (220)
Q Consensus 165 d~d~~tvL~anIPVrrvK~~~ 185 (220)
+++ .++|++|||+++.+...
T Consensus 69 ~~~-~~vL~~nIpl~~~~~~~ 88 (95)
T 2kxo_A 69 QDG-MDVLELNITLPEQKKVL 88 (95)
T ss_dssp ETT-EEEEEEEEEECCCCCCC
T ss_pred CCC-cEEEEEEEEeCCCCccc
Confidence 887 58999999999877654
No 2
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=99.90 E-value=5.2e-25 Score=164.60 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC-CCCceEEEEEEeccC
Q 027649 110 SNARIAKQRLQMILFSDRC-AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD-TDLGTIYSVTVPVRR 180 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~-~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d-~d~~tvL~anIPVrr 180 (220)
+||++||+|||+||+|||+ +++|++|++||+||++||+|||+||+++ |+|+++++ ++ .++|++||+++.
T Consensus 2 ~Sa~vAKeRLqliLahdR~~~~~pd~l~~lk~eIl~VIsKYv~Id~~~-v~v~l~~~~~~-~~vLe~nI~lp~ 72 (77)
T 3r9j_C 2 NTANIAKERLQNIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEM-VTVQLEQKDGD-ISILELNVTLPE 72 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHTTGGGTTSCCCCSC-CCCEEEEETTT-EEEEEBCCEEC-
T ss_pred CcHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhheecCccc-EEEEEEEcCCC-EEEEEEEEEcCC
Confidence 6899999999999999999 8999999999999999999999999996 99999998 56 589999999985
No 3
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=99.88 E-value=4.4e-25 Score=166.08 Aligned_cols=77 Identities=19% Similarity=0.370 Sum_probs=56.0
Q ss_pred hHHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEE-ee
Q 027649 86 NMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNV-ST 164 (220)
Q Consensus 86 ~M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l-~~ 164 (220)
.|+||++| + |++||++||+|||+||+|||+ ++|+++++||+||++||+|||+| ++ |+|++ ++
T Consensus 3 ~M~l~~~f-~------------k~~Sa~vAKeRLqliLa~dR~-~~p~~l~~lk~eil~VIskYv~i--d~-v~V~l~e~ 65 (80)
T 3ku7_A 3 HMSLFDFF-K------------NKGSAATATDRLKLILAKERT-LNLPYMEEMRKEIIAVIQKYTKS--SD-IHFKTLDS 65 (80)
T ss_dssp --------------------------CCSSSCEEEEEEEEESS-CCCTTHHHHHHHHHHHHHHHHCC--CE-EEEECC--
T ss_pred cccHhHhc-C------------CCCcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHcCc--cc-eEEEEEec
Confidence 38999944 2 468999999999999999995 89999999999999999999998 44 99999 77
Q ss_pred CCCCceEEEEEEeccC
Q 027649 165 DTDLGTIYSVTVPVRR 180 (220)
Q Consensus 165 d~d~~tvL~anIPVrr 180 (220)
+++ .++|++||+++|
T Consensus 66 ~~~-~~vLe~nI~lp~ 80 (80)
T 3ku7_A 66 NQS-VETIEVEIILPR 80 (80)
T ss_dssp -CC-EEEEEEEEECC-
T ss_pred CCC-EEEEEEEeecCC
Confidence 777 489999999975
No 4
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=66.04 E-value=3.2 Score=35.13 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=28.5
Q ss_pred HHHHhhCCCC-CHHHHHHHHHHHHHHhccccc
Q 027649 121 MILFSDRCAV-SDEAKRKIVNNIVHALSDFVE 151 (220)
Q Consensus 121 lILahDR~~~-SPd~Le~Lk~DILeVISKYVe 151 (220)
+||.+||.|+ +++.++.|++.++.++..|+.
T Consensus 160 ivLfsd~~gL~~~~~Ve~lqe~~~~aL~~yi~ 191 (257)
T 3v3e_B 160 LVLITDRHGLQEPRRVEELQNRIASCLKEHVA 191 (257)
T ss_dssp HHHSSCCTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6788899998 899999999999999999985
No 5
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=52.69 E-value=17 Score=23.17 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-+.|.+++.+.+.+.+++ +.|.+..-
T Consensus 10 grs~eqk~~l~~~i~~~l~~~lg~~~~~-v~V~i~e~ 45 (61)
T 2opa_A 10 GRTDEQKRNLVEKVTEAVKETTGASEEK-IVVFIEEM 45 (61)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGG-CEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcCe-EEEEEEEc
Confidence 5689999999999999999999999996 88888653
No 6
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=52.66 E-value=17 Score=23.15 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-+.|.+++.+.+.+.+++ +-|.+..-
T Consensus 10 grs~e~k~~l~~~i~~~l~~~lg~p~~~-v~v~i~e~ 45 (62)
T 1otf_A 10 GRTDEQKETLIRQVSEAMANSLDAPLER-VRVLITEM 45 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCGGG-CEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCccc-EEEEEEEe
Confidence 5699999999999999999999999996 88888753
No 7
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=51.36 E-value=8.4 Score=32.68 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=25.0
Q ss_pred hhCCCCC----HHHHHHHHHHHHHHhccccc
Q 027649 125 SDRCAVS----DEAKRKIVNNIVHALSDFVE 151 (220)
Q Consensus 125 hDR~~~S----Pd~Le~Lk~DILeVISKYVe 151 (220)
.||.|+. +..++++++.+..++.+|+.
T Consensus 161 pDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~ 191 (244)
T 3gyt_A 161 SKREGLVSQQDKETVEKLHRNYESLLHRYLY 191 (244)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 5999986 78999999999999999996
No 8
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=47.64 E-value=28 Score=22.33 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
+.+++...+|-++|-+++++.+.+.++. |.|.+....
T Consensus 11 g~s~eqk~~l~~~lt~~l~~~lg~~~~~-v~V~i~e~~ 47 (64)
T 3abf_A 11 GRPPEKKRELVRRLTEMASRLLGEPYEE-VRVILYEVR 47 (64)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCccc-EEEEEEEcC
Confidence 5688999999999999999999999996 999997643
No 9
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=46.93 E-value=22 Score=23.36 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
|.+++...+|-+.|-+++.+.+.+..++ +.|.+..-
T Consensus 10 Grs~eqk~~L~~~it~~~~~~lg~p~~~-v~V~i~e~ 45 (65)
T 3ry0_A 10 GRSPQEVAALGEALTAAAHETLGTPVEA-VRVIVEET 45 (65)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGG-CEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCccc-EEEEEEEc
Confidence 5699999999999999999999999996 88888653
No 10
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=45.55 E-value=28 Score=23.51 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccCcC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVK 182 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrrvK 182 (220)
+.+++....|-++|-+++.+.+.+.+++ |.|.+..-+. ..-...-.++...|
T Consensus 11 grs~eqK~~L~~~it~~l~~~lg~p~~~-v~V~i~e~~~-~~w~~gG~~~~e~r 62 (72)
T 3mb2_A 11 GRSTEQKAELARALSAAAAAAFDVPLAE-VRLIIQEVPP-THWTVGGISMAELR 62 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCGGG-EEEEEEEECG-GGEEETTEETTCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCccc-EEEEEEEcCH-HHeeECCEEHHHHH
Confidence 5799999999999999999999999996 9999876332 12233344554444
No 11
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=42.50 E-value=31 Score=22.67 Aligned_cols=36 Identities=8% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-++|-+++++.+.+.+++ |.|.+..-
T Consensus 9 grt~eqK~~L~~~it~~~~~~lg~~~~~-v~V~i~E~ 44 (62)
T 3m20_A 9 KLDVGKKREFVERLTSVAAEIYGMDRSA-ITILIHEP 44 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCTTS-CEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcce-EEEEEEEe
Confidence 5789999999999999999999999997 99998753
No 12
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=42.27 E-value=14 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=28.0
Q ss_pred HHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 121 MILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 121 lILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
++|.+||.++ +++.++.+|+.+..++.+|+..
T Consensus 155 IvLfnd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 187 (244)
T 1pdu_A 155 LTLITERHGLREPKKVEQLQMKIIGSLRDHVTY 187 (244)
T ss_dssp HHHSSCCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 5666799888 7899999999999999999964
No 13
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=42.12 E-value=31 Score=21.60 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-++|-+++.+.+.+.++. +.|.+..-
T Consensus 13 g~s~e~k~~l~~~l~~~l~~~lg~p~~~-v~v~i~e~ 48 (63)
T 2x4k_A 13 GRSDEQLKNLVSEVTDAVEKTTGANRQA-IHVVIEEM 48 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGG-CEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCccc-EEEEEEEc
Confidence 5689999999999999999999999986 88888653
No 14
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=41.39 E-value=14 Score=33.42 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.6
Q ss_pred HHH-hhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 122 ILF-SDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 122 ILa-hDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
||. .||.|+ +++.+++|++.++.++..|+...
T Consensus 333 vLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~ 366 (419)
T 3dzy_D 333 IILSGDRPGLLNVKPIEDIQDNLLQALELQLKLN 366 (419)
T ss_dssp HHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 599998 89999999999999999998753
No 15
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=39.97 E-value=16 Score=30.12 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
...+.|==.- ++|.+||.++ +++.++.+|+.+..++.+|+...
T Consensus 151 d~~E~~lLkA-ivL~~d~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 194 (248)
T 2nxx_E 151 DNAEYALLTA-IVIFSERPALIEGWKVEKIQEIYLEALRAYVDNR 194 (248)
T ss_dssp CHHHHHHHHH-HHHTCCCSSCTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHH-HHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455542221 4566799887 68999999999999999999643
No 16
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=38.97 E-value=33 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
|.|++...+|-+.|-+++.+.+.+.+++ |.|.+..-+
T Consensus 11 Grs~eqK~~L~~~it~~l~~~lg~p~~~-v~V~i~E~~ 47 (76)
T 3ej9_A 11 GRTDEQKRALSAGLLRVISEATGEPREN-IFFVIREGS 47 (76)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHCCCGGG-CEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCccc-EEEEEEEeC
Confidence 5699999999999999999999999996 998887643
No 17
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=38.30 E-value=33 Score=22.69 Aligned_cols=36 Identities=6% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-+.|-+++.+.+.+.+++ |.|.+..-
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~~-v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKAS-IVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGGG-CEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCccc-EEEEEEEe
Confidence 6799999999999999999999999996 99988764
No 18
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=37.23 E-value=53 Score=23.78 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=28.7
Q ss_pred hhcCCCCCCCCCCcHHHHHHHHHHHHHhhC--CCCCHHHHHH
Q 027649 98 KIVFPSPTTRRNSNARIAKQRLQMILFSDR--CAVSDEAKRK 137 (220)
Q Consensus 98 ~i~Fp~~~~kkksSa~IAKeRLKlILahDR--~~~SPd~Le~ 137 (220)
+-||++. .....|++..|++++-++..+- .-+|++.+..
T Consensus 5 k~FFs~~-~g~~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~ 45 (76)
T 2ahq_A 5 RTFFVRE-SAEGLTQGELMKLIKEIVENEDKRKPYSDQEIAN 45 (76)
T ss_dssp SCCCCCS-SCCSCCHHHHHHHHHHHGGGCCSSSCCCHHHHHH
T ss_pred HHhcCCC-CCccccHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 5688873 3445689999999999999984 4478765543
No 19
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=36.88 E-value=19 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=28.4
Q ss_pred HHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 121 MILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 121 lILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
++|.+||.|+ +++.++.+|+.++.++..|+..
T Consensus 182 ivL~~~~~gL~~~~~v~~lq~~~~~aL~~y~~~ 214 (271)
T 1ovl_A 182 LAMVTERHGLKEPKRVEELQNKIVNCLKDHVTF 214 (271)
T ss_dssp HHHSSCCTTCSCHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 5777898887 6899999999999999999875
No 20
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=36.34 E-value=21 Score=29.95 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 121 MILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 121 lILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
++|.+||.++ +++.++.+|+.+..++.+|+...
T Consensus 177 ivL~nd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 210 (266)
T 2r40_D 177 IVIFSDRPGLEQPLLVEEIQRYYLNTLRVYILNQ 210 (266)
T ss_dssp HHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecCCCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555688887 68999999999999999999653
No 21
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=34.21 E-value=50 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 127 RCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 127 R~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
..+.+++...+|-+.|-+++++++.+.+++ |.|.+...+
T Consensus 73 ~~grt~eqK~~l~~~l~~~l~~~lg~~~~~-v~I~i~e~~ 111 (131)
T 2aal_A 73 SRPRSEEQKVCFYKLLTGALERDCGISPDD-VIVALVENS 111 (131)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCGGG-EEEEEEECC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHhCcCccc-EEEEEEEcC
Confidence 557899999999999999999999999996 999997643
No 22
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=33.57 E-value=24 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhCC
Q 027649 112 ARIAKQRLQMILFSDRC 128 (220)
Q Consensus 112 a~IAKeRLKlILahDR~ 128 (220)
...|++||+..|..|+.
T Consensus 19 V~~aR~rL~eaL~ad~l 35 (36)
T 2l2l_B 19 VQQVRKKLEEALMADIL 35 (36)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcccc
Confidence 56799999999998874
No 23
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=33.43 E-value=24 Score=30.75 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 121 MILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 121 lILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
++|.+||.++ ++..++.+++.++.++..|+...
T Consensus 225 IvLf~d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 258 (310)
T 1z5x_E 225 IVIFSERPSLSEGWKVEKIQEIYIEALKAYVENR 258 (310)
T ss_dssp HHHTCCCTTCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799888 68899999999999999999643
No 24
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=32.40 E-value=22 Score=30.24 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=32.0
Q ss_pred CcHHHHHHHHH-HHH-HhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 110 SNARIAKQRLQ-MIL-FSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 110 sSa~IAKeRLK-lIL-ahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
...+.|= || +|| -.||.|+ +++.++.+|+.++.++.+|+...
T Consensus 176 d~~E~al--LkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~ 220 (273)
T 3vi8_A 176 DDSDISL--FVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSN 220 (273)
T ss_dssp CHHHHHH--HHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH--HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455553 34 333 3799988 79999999999999999999754
No 25
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=31.71 E-value=49 Score=22.54 Aligned_cols=37 Identities=5% Similarity=0.196 Sum_probs=32.7
Q ss_pred CC-CHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 129 AV-SDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 129 ~~-SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
|. +++...+|-+.|.+++.+.+.+.+++ +-|.+..-+
T Consensus 10 Grls~eqk~~L~~~l~~~l~~~lgip~~~-v~V~i~e~~ 47 (76)
T 1gyx_A 10 RELDEQQKAALAADITDVIIRHLNSKDSS-ISIALQQIQ 47 (76)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTCCGGG-CEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCCce-EEEEEEEeC
Confidence 44 99999999999999999999999996 998887643
No 26
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=30.89 E-value=28 Score=28.44 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 109 NSNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 109 ksSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
-...+.|==.-=+++-.||.|+ ++..++.+|+.+..++.+|+..
T Consensus 152 ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 196 (246)
T 1xvp_B 152 LQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKG 196 (246)
T ss_dssp CCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3445665322222223389888 7899999999999999999974
No 27
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=30.72 E-value=53 Score=26.26 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 127 RCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 127 R~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
|.+-+.+....+-+.|.+.|..++.|..++ |.|.|....
T Consensus 92 ~~gRt~eqK~~l~~~l~~~L~~~~gi~~~d-v~I~I~E~~ 130 (161)
T 3c6v_A 92 RTMTSDEQRQGFLKRIDAFLTPMFEPKGID-WEYFVTEAP 130 (161)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHHHHGGGTCE-EEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCChhh-EEEEEEEcC
Confidence 566799999999999999999999999997 999997644
No 28
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=29.92 E-value=37 Score=26.85 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 109 NSNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 109 ksSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
-...+.|==.-=+++-.||.|+ +++.++.+|+.+..++.+|+..
T Consensus 118 ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~ 162 (199)
T 3cqv_A 118 LSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMK 162 (199)
T ss_dssp CCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666433323333488887 6899999999999999999864
No 29
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=29.79 E-value=31 Score=28.61 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 109 NSNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 109 ksSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
-...+.|==.-=+++-.||.|+ +++.++.+++.+..++..|+...
T Consensus 153 ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~ 198 (248)
T 3l0l_A 153 FSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKT 198 (248)
T ss_dssp CCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666433333444699888 78999999999999999998643
No 30
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=29.15 E-value=75 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-++|-+++ +.+.+.+++ |.|.+...
T Consensus 75 gRt~EqK~~L~~~it~~l-~~lg~~~~~-v~V~i~E~ 109 (136)
T 3mlc_A 75 GRTIETKQRVFAAITESL-APIGVAGSD-VFIAITEN 109 (136)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTTTCCGGG-EEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHH-HHcCCCccc-EEEEEEEc
Confidence 569999999999999999 999999997 99999764
No 31
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=27.79 E-value=33 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=26.5
Q ss_pred HHHHhhCCCCC-H---HHHHHHHHHHHHHhcccccc
Q 027649 121 MILFSDRCAVS-D---EAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 121 lILahDR~~~S-P---d~Le~Lk~DILeVISKYVeI 152 (220)
++|.++|.|++ + ..++.+++.+..++.+|+..
T Consensus 157 ivLfsp~~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~ 192 (243)
T 3up3_A 157 IVLFSPRDSITDPEDRRIIARHHEQFSALLNRYLES 192 (243)
T ss_dssp HHHSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888874 4 69999999999999999963
No 32
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=27.76 E-value=37 Score=28.74 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.3
Q ss_pred HHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 123 LFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 123 LahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
+-.||.|+ +++.++.+|+.+..++..|+...
T Consensus 186 fnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 217 (269)
T 3u9q_A 186 LSGDRPGLLNVKPIEDIQDNLLQALELQLKLN 217 (269)
T ss_dssp TCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 33599888 78999999999999999998753
No 33
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=27.76 E-value=34 Score=28.09 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
...+.|==.-=+++-.||.|+ ++..++.+|+.+..++.+|+..
T Consensus 157 d~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 200 (254)
T 3b0t_A 157 HEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRC 200 (254)
T ss_dssp CHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555322222233388888 6899999999999999999864
No 34
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=27.45 E-value=36 Score=27.96 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
+.|..+|.. =+-...+.|==.-=+++-.||.|+ +++.++.+|+.+..++.+|+...
T Consensus 136 ~~~~~~l~~-----------L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 192 (244)
T 1nq7_A 136 FDFAKNLCS-----------LQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKN 192 (244)
T ss_dssp HHHHHHHHT-----------TCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------hCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 366666653 234567777533323333489888 78999999999999999998643
No 35
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=27.35 E-value=1.6e+02 Score=21.50 Aligned_cols=50 Identities=4% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccCc
Q 027649 128 CAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRV 181 (220)
Q Consensus 128 ~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrrv 181 (220)
..+++.+-+.+.+.+-. |.||.+=..+ ++|.++.++. .-..+++|++++.
T Consensus 10 i~~t~alr~~v~~kl~k-L~r~~~~i~~--~~V~l~~e~~-~~~~ei~i~~~g~ 59 (107)
T 1imu_A 10 MDITPAIREHLEERLAK-LGKWQTQLIS--PHFVLNKVPN-GFSVEASIGTPLG 59 (107)
T ss_dssp SCCCHHHHHHHHHHHHH-HHTSSCCCSS--CEEEEEEETT-EEEEEEEECCTTC
T ss_pred CcCCHHHHHHHHHHHHH-HHHhcCCCcE--EEEEEEEcCC-ceEEEEEEEcCCC
Confidence 36688888888888877 9999863222 6666766554 3456888887764
No 36
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.92 E-value=46 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=16.0
Q ss_pred HHHHHHHHHhh-CCCCCHHHHHHHHHHHHHHhcccc
Q 027649 116 KQRLQMILFSD-RCAVSDEAKRKIVNNIVHALSDFV 150 (220)
Q Consensus 116 KeRLKlILahD-R~~~SPd~Le~Lk~DILeVISKYV 150 (220)
=+|||-=|..+ | .-+.+||+||+++|.-++
T Consensus 9 le~~KqEIL~E~R-----kElqK~K~EIIeAi~~El 39 (45)
T 1use_A 9 LQRVKQELLEEVK-----KELQKVKEEIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45555444444 3 234566666776665543
No 37
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=26.88 E-value=32 Score=28.45 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
...+.|==..=+++-.||.|+ +++.++.+|+.++.++..|+.-.
T Consensus 141 d~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 185 (249)
T 3p0u_A 141 DGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQAT 185 (249)
T ss_dssp CHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555433333344488887 67899999999999999999753
No 38
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=26.16 E-value=39 Score=28.49 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 109 NSNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 109 ksSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
-...+.|==.-=+++-.||.|+ +++.++.+|+.+..++.+|+...
T Consensus 162 ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 207 (270)
T 1n83_A 162 LTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKN 207 (270)
T ss_dssp CCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666433323333489888 68999999999999999998643
No 39
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=26.00 E-value=39 Score=28.63 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=25.8
Q ss_pred HhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 124 FSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 124 ahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
-.||.++ +++.++.+|+.++.++..|+...
T Consensus 186 npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 216 (268)
T 3f5c_B 186 NPDLPGLQCVKYIEGLQWRTQQILTEHIRMM 216 (268)
T ss_dssp CTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489887 68999999999999999999753
No 40
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=25.95 E-value=76 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
+.+++...+|-++|-+++.+.+.+.+++ |.|.+..-
T Consensus 69 grt~eqK~~l~~~l~~~l~~~lg~~~~~-v~V~i~e~ 104 (128)
T 1mww_A 69 GRMEGTKKRLIKMLFSELEYKLGIRAHD-VEITIKEQ 104 (128)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHCCCGGG-EEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcChhh-EEEEEEEC
Confidence 5699999999999999999999999996 99998753
No 41
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=25.90 E-value=32 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=21.1
Q ss_pred CCHHHHHHHHH--HHHHHhccccccccC
Q 027649 130 VSDEAKRKIVN--NIVHALSDFVEIESQ 155 (220)
Q Consensus 130 ~SPd~Le~Lk~--DILeVISKYVeID~e 155 (220)
++++.++++|+ +|.++|++|+++...
T Consensus 5 ~~~~~i~~ik~~~~i~~v~~~~~~lk~~ 32 (103)
T 1d0q_A 5 IPEETIEAIRRGVDIVDVIGEYVQLKRQ 32 (103)
T ss_dssp SCHHHHHHHHHHCCHHHHHTTTSCCEEE
T ss_pred CCHHHHHHHHHcCCHHHHHHHhCCeeec
Confidence 58899999975 999999999765433
No 42
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=24.83 E-value=42 Score=28.60 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
...+.|==.-=+++-.||.++ ++..++.+|+.++.++.+|+..
T Consensus 160 d~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~ 203 (292)
T 2o4j_A 160 HEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRC 203 (292)
T ss_dssp CHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555322222333488887 6899999999999999999965
No 43
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=24.79 E-value=44 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
...+.|==.-=+++-.||.|+ ++..++.+|+.+..++.+|+..
T Consensus 143 d~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 186 (236)
T 1fcy_A 143 DDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARR 186 (236)
T ss_dssp CHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 445555322222233589887 7899999999999999999864
No 44
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=24.75 E-value=42 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=25.0
Q ss_pred hhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 125 SDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 125 hDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
.||.++ .++.++.+|+.++.++.+|+..
T Consensus 218 pd~~gL~~~~~Ve~lqe~~~~aL~~y~~~ 246 (302)
T 2hc4_A 218 PDRPGVQDHVRIEALQDRLCDVLQAYIRI 246 (302)
T ss_dssp SCSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 388888 7899999999999999999964
No 45
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=24.64 E-value=2.1e+02 Score=20.91 Aligned_cols=50 Identities=8% Similarity=0.152 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccCc
Q 027649 128 CAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRV 181 (220)
Q Consensus 128 ~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrrv 181 (220)
..+++.+-+.+.+.+- -|.||.+=- . .++|.++.+... -..+++|++++-
T Consensus 10 ie~t~alr~~ve~Kl~-kL~k~~d~i-~-~~~V~l~~e~~~-~~~eitv~~~G~ 59 (101)
T 3v26_X 10 VEITEALREFVTAKFA-KLEQYFDRI-N-QVYVVLKVEKVT-HTSDATLHVNGG 59 (101)
T ss_dssp SCCCHHHHHHHHHHHH-HHHTTCSCC-C-CEEEEEEECSSC-EEEEEEECSTTC
T ss_pred ccCCHHHHHHHHHHHH-HHHhhcCCC-e-EEEEEEEEcCCC-EEEEEEEEcCCc
Confidence 4568888888887766 589999632 3 377777766553 457888888763
No 46
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=24.47 E-value=50 Score=27.44 Aligned_cols=44 Identities=11% Similarity=0.248 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
...+.|==..=+++-.||.++ ++..++.+|+.++.++.+|+...
T Consensus 164 d~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 208 (245)
T 3n00_A 164 TEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKN 208 (245)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444333223344488887 68899999999999999998743
No 47
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=24.39 E-value=80 Score=23.98 Aligned_cols=37 Identities=8% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649 128 CAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165 (220)
Q Consensus 128 ~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d 165 (220)
.+.+++...+|-+.|-+++.+.+.+.+++ +.|.+..-
T Consensus 71 ~Grt~eqk~~l~~~l~~~l~~~lgi~~~~-v~V~i~E~ 107 (148)
T 3n4h_A 71 SGRTEKQKEELLLRLTQEIALILGIPNEE-VWVYITEI 107 (148)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCGGG-EEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcCc-EEEEEEEc
Confidence 35699999999999999999999999996 99988753
No 48
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=24.36 E-value=43 Score=27.94 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.5
Q ss_pred hCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 126 DRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 126 DR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
||.|+ ++..++.+|+.++.++.+|+...
T Consensus 158 d~~gL~~~~~ve~lqe~~~~aL~~y~~~~ 186 (260)
T 3vhv_A 158 PKDGLKSQAAFEEMRTNYIKELRKMVTKC 186 (260)
T ss_dssp ETTCCTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 89888 67889999999999999999754
No 49
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.24 E-value=86 Score=22.42 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
+.+++...++-++|-+.+.+.+.|.+++ |-|.+..-+
T Consensus 66 g~~~eqk~~l~~~i~~~l~~~lgi~~~~-v~I~~~e~~ 102 (113)
T 1hfo_A 66 GIEPSRNRDHSAKLFDHLNTKLGIPKNR-MYIHFVNLN 102 (113)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHCCCGGG-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcCe-EEEEEEECC
Confidence 4689999999999999999999999996 999987543
No 50
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=24.14 E-value=97 Score=23.68 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHH--------HHHHHHhcccccccc
Q 027649 83 NAINMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIV--------NNIVHALSDFVEIES 154 (220)
Q Consensus 83 ~~~~M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk--------~DILeVISKYVeID~ 154 (220)
|||...|-+||...++...|.. .++-+-+++|+ ++. .+ ..++|+.++-++. -+.+..|++|+.|..
T Consensus 2 ~~m~~~~~~RL~~L~~~~~~~~-~~~~T~~elA~-~~~---~~-G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~ 75 (135)
T 3r1f_A 2 NAMSTTFAARLNRLFDTVYPPG-RGPHTSAEVIA-ALK---AE-GITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKA 75 (135)
T ss_dssp ----CCHHHHHHHHHHHCCCTT-SCCCCHHHHHH-HHH---TT-TCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCT
T ss_pred CchHHHHHHHHHHHHHhhcccC-CCCCCHHHHHH-HHc---cc-CCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCH
Confidence 6655677788887777777743 22335577776 444 22 2248999999985 378999999999886
Q ss_pred CC
Q 027649 155 QD 156 (220)
Q Consensus 155 e~ 156 (220)
+-
T Consensus 76 ~y 77 (135)
T 3r1f_A 76 AY 77 (135)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 51
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=23.97 E-value=89 Score=22.48 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
+.+++...++-++|-+.+.+.+.|.+++ |-|.+..-+
T Consensus 67 g~~~eqk~~l~~~i~~~l~~~lgi~~~~-v~I~~~e~~ 103 (115)
T 1uiz_A 67 KIGGPQNKSYTKLLCDILTKQLNIPANR-VYINYYDLN 103 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCCCGGG-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcce-EEEEEEECC
Confidence 5689999999999999999999999996 999987543
No 52
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=23.59 E-value=1.8e+02 Score=20.72 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccCc
Q 027649 128 CAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRV 181 (220)
Q Consensus 128 ~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrrv 181 (220)
..+++.+-+.+.+.+-. |.||.+=- . .++|.++.+.+. -..+++|++++.
T Consensus 10 i~~t~al~~~v~~kl~k-L~k~~~~i-~-~~~V~l~~e~~~-~~~ei~i~~~g~ 59 (96)
T 3tqm_A 10 VDISPALRELTEKKLHR-IQPCRDEI-S-NIHIIFHINKLK-KIVDANVKLPGS 59 (96)
T ss_dssp SCCCHHHHHHHHHHHTT-CCSSGGGC-C-EEEEEEEEETTE-EEEEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHH-HHHhcCCC-e-EEEEEEEEeCCc-eEEEEEEEeCCc
Confidence 45688888888877765 99999732 3 377777766553 456888887654
No 53
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=23.34 E-value=56 Score=26.80 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.6
Q ss_pred hhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 125 SDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 125 hDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
.||.++ .++.++.+|+.+..++..|+..
T Consensus 162 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 190 (244)
T 2e2r_A 162 SDSMHIEDVEAVQKLQDVLHEALQDYEAG 190 (244)
T ss_dssp CCCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 488887 6889999999999999999864
No 54
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=23.32 E-value=50 Score=27.87 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.5
Q ss_pred hhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 125 SDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 125 hDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
.||.|+ ++..++.+++.++.++.+|+...
T Consensus 203 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 232 (283)
T 3ipq_A 203 ADRPNVQDQLQVERLQHTYVEALHAYVSIH 232 (283)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 489888 78999999999999999999653
No 55
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=23.08 E-value=56 Score=26.76 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
...+.|==.-=+++-.|+.++ +++.++.+|+.+..++..|+...
T Consensus 136 d~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 180 (243)
T 3ltx_A 136 HKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKY 180 (243)
T ss_dssp CHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444322223334488887 68899999999999999998753
No 56
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=22.95 E-value=50 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=26.8
Q ss_pred HHHh-hCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 122 ILFS-DRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 122 ILah-DR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
||.+ ||.++ ++..++.+|+.++.++.+|+...
T Consensus 229 vLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 262 (316)
T 1nrl_A 229 SLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECN 262 (316)
T ss_dssp HHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 89888 68999999999999999999653
No 57
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=22.42 E-value=51 Score=26.81 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.6
Q ss_pred hhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 125 SDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 125 hDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
.||.++ ++..++.+|+.+..++.+|+..
T Consensus 153 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 181 (244)
T 3cjw_A 153 SDACGLSDVAHVESLQEKSQCALEEYVRS 181 (244)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 488887 5789999999999999999864
No 58
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=22.23 E-value=2.2e+02 Score=20.36 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccCc
Q 027649 128 CAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRV 181 (220)
Q Consensus 128 ~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrrv 181 (220)
..+++.+-+.+.+-+ +-|.||.+=- . .++|.++.+... -..+++|++++.
T Consensus 10 i~vt~al~~~v~~Kl-~kl~k~~~~i-~-~~~V~l~~e~~~-~~vei~i~~~g~ 59 (95)
T 4fyl_A 10 IDLTDSMQDYVHSKF-DKLERFFDHI-N-HVQVILRVEKLR-QIAEATLHVNQA 59 (95)
T ss_dssp SCCCHHHHHHHHHHH-HHHTTTCCCE-E-EEEEEEEEETTE-EEEEEEEEETTE
T ss_pred CccCHHHHHHHHHHH-HHHHHhcCCC-e-EEEEEEEEecCc-EEEEEEEEeCCc
Confidence 456888888887776 5689998632 2 266667665543 456888887653
No 59
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=22.06 E-value=1e+02 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 129 AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 129 ~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
+.+++...++-++|-+.+.+.+.|.+++ |-|.+..-+
T Consensus 67 g~~~eqk~~l~~~i~~~l~~~lgi~~~~-v~I~~~e~~ 103 (119)
T 2os5_A 67 ALSADDNIRHTQKITQFCQDTLKLPKDK-VIITYFDLQ 103 (119)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGG-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCccc-EEEEEEECC
Confidence 5689999999999999999999999996 999987543
No 60
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=21.83 E-value=99 Score=24.35 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649 127 RCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166 (220)
Q Consensus 127 R~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~ 166 (220)
|.+-+.+....|-+.|-+++++.+.+.+++ |.|.+....
T Consensus 70 ~~GRt~eqK~~L~~~I~~~l~~~~g~~~ed-V~V~i~e~~ 108 (149)
T 3mf7_A 70 REGRSADLKGQLAQRIVDDVSVAAEIDRKH-IWVYFGEMP 108 (149)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCChhh-EEEEEEEcC
Confidence 447799999999999999999999999997 999886543
No 61
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=21.50 E-value=54 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.5
Q ss_pred hhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 125 SDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 125 hDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
.||.++ ++..++.+|+.++.++.+|+...
T Consensus 182 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 211 (266)
T 3kmr_A 182 GDRQDLEQPDRVDMLQEPLLEALKVYVRKR 211 (266)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 588887 68899999999999999998753
No 62
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=21.40 E-value=64 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHhhCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 122 ILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 122 ILahDR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
++-.||.++ +++.++.+|+.+..++..|+...
T Consensus 159 L~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 191 (248)
T 3k6p_A 159 LANSDSVHIEDAEAVEQLREALHEALLEYEAGR 191 (248)
T ss_dssp HHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333488887 68899999999999999998753
No 63
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=21.10 E-value=54 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.7
Q ss_pred hCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 126 DRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 126 DR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
||.|+ ++..++.+|+.++.++.+|+...
T Consensus 160 d~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 188 (261)
T 3mnp_A 160 PKEGLKSQELFDEIRMTYIKELGKAIAKR 188 (261)
T ss_dssp ETTCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 88887 67899999999999999999754
No 64
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=20.89 E-value=58 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.4
Q ss_pred hhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 125 SDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 125 hDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
.||.|+ +++.++.+|+.+..++.+|+..
T Consensus 152 pd~~gL~~~~~v~~~q~~~~~aL~~y~~~ 180 (235)
T 2nxx_A 152 PDVRGIKSVQEVEMLREKIYGVLEEYTRT 180 (235)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 378887 6899999999999999999864
No 65
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=20.54 E-value=2.2e+02 Score=21.20 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhcc
Q 027649 112 ARIAKQRLQMILFSDRCAVSDEAKR----KIVNNIVHALSD 148 (220)
Q Consensus 112 a~IAKeRLKlILahDR~~~SPd~Le----~Lk~DILeVISK 148 (220)
......|.+|-.+|-|.|++|+... .+.+.|+++|.+
T Consensus 80 ~~~~~~~~~Ig~~H~~~gi~~~~y~~~~~~v~~~l~~~i~~ 120 (162)
T 2w31_A 80 NRYIHNLQKIGHAHVRVGLNAHYVNVAMNVVRQFTLSIIQD 120 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988 777777777654
No 66
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=20.48 E-value=58 Score=26.94 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhcccccc
Q 027649 110 SNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEI 152 (220)
Q Consensus 110 sSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeI 152 (220)
...+.|==.-=+++-.||.|+ .++.++.+|+.+..++.+|+..
T Consensus 160 d~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 203 (264)
T 1g2n_A 160 DQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRR 203 (264)
T ss_dssp CHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555322222333488887 6899999999999999999864
No 67
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=20.17 E-value=58 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=26.0
Q ss_pred HHHh--hCCCC-CHHHHHHHHHHHHHHhccccccc
Q 027649 122 ILFS--DRCAV-SDEAKRKIVNNIVHALSDFVEIE 153 (220)
Q Consensus 122 ILah--DR~~~-SPd~Le~Lk~DILeVISKYVeID 153 (220)
+|.. ||.|+ ++..++.+|+.++.++.+|+...
T Consensus 186 vLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~ 220 (294)
T 3vhu_A 186 LLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKC 220 (294)
T ss_dssp HHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4554 89888 67889999999999999999754
Done!