BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027650
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1C3V|B Chain B, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1P9L|A Chain A, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
pdb|1P9L|B Chain B, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
Length = 245
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE 190
G++L A A+ + + E++E
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIE 130
>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL7|A Chain A, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|B Chain B, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|C Chain C, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|D Chain D, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|E Chain E, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|F Chain F, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|G Chain G, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|H Chain H, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
Length = 245
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE 190
G++L A A+ + + E++E
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIE 130
>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
pdb|1YL5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
Length = 247
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 50 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 109
Query: 168 GSILLQQAAISASFHYKNVEIVE 190
G++L A A+ + + E++E
Sbjct: 110 GAVLSMHFAKQAARFFDSAEVIE 132
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161
Y + A F V+Y I E V A++AFC+K + C+
Sbjct: 65 YITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIF 106
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161
Y + A F V+Y I E V A++AFC+K + C+
Sbjct: 65 YITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIF 106
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 135 VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISASFHYKNVEIVES 191
VY+PH+++E L++ M L +P+ ++ I Q +S + H VEI E+
Sbjct: 281 VYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEA 338
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 79 VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA 128
+CD+ QPL IP SD GS+ AV+I T ++V++A A
Sbjct: 53 LCDLRQPLAIP--SD----FGSVHHEVELAVLIGATLRQATEEHVRKAIA 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,080
Number of Sequences: 62578
Number of extensions: 165358
Number of successful extensions: 430
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 15
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)