Query 027650
Match_columns 220
No_of_seqs 217 out of 1489
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0289 DapB Dihydrodipicolina 100.0 2.7E-51 5.9E-56 355.8 18.8 166 34-208 1-171 (266)
2 TIGR00036 dapB dihydrodipicoli 100.0 1.6E-45 3.5E-50 323.4 20.6 170 35-211 1-175 (266)
3 PLN02775 Probable dihydrodipic 100.0 5.4E-44 1.2E-48 315.1 19.8 172 27-208 3-184 (286)
4 TIGR02130 dapB_plant dihydrodi 100.0 2E-42 4.2E-47 304.0 18.8 162 36-212 1-176 (275)
5 PRK00048 dihydrodipicolinate r 100.0 1.5E-41 3.1E-46 296.8 20.2 162 35-210 1-164 (257)
6 PF01113 DapB_N: Dihydrodipico 100.0 3E-32 6.4E-37 214.1 13.2 121 36-165 1-124 (124)
7 PF01408 GFO_IDH_MocA: Oxidore 99.7 2.4E-17 5.1E-22 126.4 12.3 116 36-161 1-118 (120)
8 PRK13303 L-aspartate dehydroge 99.7 6.4E-17 1.4E-21 142.1 14.1 128 35-173 1-130 (265)
9 COG0673 MviM Predicted dehydro 99.7 9.3E-16 2E-20 136.6 15.9 153 34-197 2-159 (342)
10 PRK11579 putative oxidoreducta 99.7 1.9E-15 4E-20 136.6 17.8 145 34-192 3-151 (346)
11 PRK13304 L-aspartate dehydroge 99.6 1.4E-14 3E-19 127.3 13.6 126 35-172 1-129 (265)
12 PRK10206 putative oxidoreducta 99.6 2.6E-14 5.7E-19 129.6 15.8 145 35-192 1-151 (344)
13 PRK13302 putative L-aspartate 99.5 9.2E-14 2E-18 122.6 14.0 125 35-172 6-132 (271)
14 TIGR01761 thiaz-red thiazoliny 99.5 2.9E-13 6.3E-18 123.2 14.0 131 34-177 2-135 (343)
15 TIGR01921 DAP-DH diaminopimela 99.5 4.1E-13 8.8E-18 121.2 14.3 155 35-203 3-164 (324)
16 PRK06270 homoserine dehydrogen 99.5 5.4E-13 1.2E-17 121.2 13.9 163 34-210 1-189 (341)
17 PRK08374 homoserine dehydrogen 99.5 4.4E-13 9.6E-18 121.6 12.9 169 35-217 2-193 (336)
18 PF05173 DapB_C: Dihydrodipico 99.4 1.2E-13 2.5E-18 110.1 4.6 45 168-212 1-48 (132)
19 KOG2741 Dimeric dihydrodiol de 99.4 6.7E-12 1.5E-16 113.2 15.7 154 32-197 3-164 (351)
20 PRK13301 putative L-aspartate 99.4 9.6E-12 2.1E-16 109.4 14.8 126 35-173 2-131 (267)
21 PLN02819 lysine-ketoglutarate 99.4 1.4E-11 3E-16 125.2 17.6 137 35-179 569-721 (1042)
22 PRK06349 homoserine dehydrogen 99.4 4.5E-12 9.8E-17 118.3 12.7 157 35-211 3-169 (426)
23 COG3804 Uncharacterized conser 99.3 1.4E-11 3E-16 108.7 11.8 152 35-200 2-169 (350)
24 PF03447 NAD_binding_3: Homose 99.3 6.9E-12 1.5E-16 96.6 7.0 110 42-161 1-116 (117)
25 PRK04207 glyceraldehyde-3-phos 99.3 3.2E-11 7E-16 109.7 10.4 97 35-139 1-111 (341)
26 COG1712 Predicted dinucleotide 99.2 1.5E-10 3.4E-15 99.3 13.6 122 36-169 1-125 (255)
27 TIGR03215 ac_ald_DH_ac acetald 99.2 1.5E-10 3.2E-15 103.1 11.6 144 35-191 1-149 (285)
28 PRK08300 acetaldehyde dehydrog 99.1 6.6E-10 1.4E-14 99.6 13.0 141 34-192 3-153 (302)
29 TIGR03855 NAD_NadX aspartate d 99.1 3.4E-10 7.3E-15 97.9 10.3 103 60-172 1-105 (229)
30 PF01118 Semialdhyde_dh: Semia 99.1 1E-09 2.3E-14 85.3 10.0 97 37-140 1-100 (121)
31 PRK06392 homoserine dehydrogen 99.1 2E-09 4.2E-14 97.6 13.1 160 36-210 1-180 (326)
32 PRK00436 argC N-acetyl-gamma-g 99.0 3.1E-09 6.8E-14 96.7 10.3 101 34-140 1-102 (343)
33 COG1748 LYS9 Saccharopine dehy 98.9 7.7E-09 1.7E-13 95.6 11.5 148 35-191 1-153 (389)
34 PRK06813 homoserine dehydrogen 98.8 6E-08 1.3E-12 88.7 13.4 164 35-211 2-187 (346)
35 COG0074 SucD Succinyl-CoA synt 98.8 8E-08 1.7E-12 85.0 12.5 159 36-220 9-173 (293)
36 PTZ00187 succinyl-CoA syntheta 98.8 7.7E-08 1.7E-12 86.9 11.9 125 34-172 28-154 (317)
37 COG4091 Predicted homoserine d 98.8 4.2E-08 9.1E-13 89.2 9.7 124 32-162 14-156 (438)
38 PF03435 Saccharop_dh: Sacchar 98.7 6.1E-08 1.3E-12 88.8 10.0 142 38-190 1-151 (386)
39 COG0460 ThrA Homoserine dehydr 98.7 3.9E-07 8.5E-12 82.7 12.6 166 34-219 2-187 (333)
40 PRK08664 aspartate-semialdehyd 98.6 2.3E-07 5E-12 84.6 10.1 97 35-138 3-108 (349)
41 PF13380 CoA_binding_2: CoA bi 98.6 8E-07 1.7E-11 69.0 11.5 110 37-170 2-114 (116)
42 TIGR01850 argC N-acetyl-gamma- 98.6 3.2E-07 7E-12 83.7 10.8 97 36-139 1-101 (346)
43 PF02629 CoA_binding: CoA bind 98.6 4E-07 8.6E-12 68.2 9.4 91 34-136 2-92 (96)
44 TIGR00978 asd_EA aspartate-sem 98.6 3.1E-07 6.8E-12 83.5 10.2 95 36-136 1-103 (341)
45 PRK05678 succinyl-CoA syntheta 98.6 1.3E-06 2.8E-11 78.2 13.7 119 35-169 8-127 (291)
46 TIGR01019 sucCoAalpha succinyl 98.6 1.5E-06 3.2E-11 77.7 13.5 119 35-169 6-125 (286)
47 PLN02968 Probable N-acetyl-gam 98.5 5.8E-07 1.3E-11 83.2 10.5 99 33-138 36-135 (381)
48 COG0057 GapA Glyceraldehyde-3- 98.5 3.3E-07 7.1E-12 82.8 8.4 103 35-141 1-126 (335)
49 PLN00125 Succinyl-CoA ligase [ 98.5 1.9E-06 4E-11 77.5 13.0 119 36-170 13-133 (300)
50 PRK09436 thrA bifunctional asp 98.5 1.4E-06 3E-11 87.7 13.0 166 34-210 464-646 (819)
51 smart00846 Gp_dh_N Glyceraldeh 98.5 9.7E-07 2.1E-11 71.6 9.6 33 36-69 1-33 (149)
52 PRK05671 aspartate-semialdehyd 98.5 2.1E-06 4.5E-11 78.3 12.7 120 33-170 2-137 (336)
53 PF03446 NAD_binding_2: NAD bi 98.5 1.3E-06 2.9E-11 71.0 10.2 114 35-164 1-120 (163)
54 PRK08040 putative semialdehyde 98.5 2E-06 4.2E-11 78.5 12.2 120 33-170 2-138 (336)
55 PRK14874 aspartate-semialdehyd 98.5 1.6E-06 3.4E-11 78.8 11.4 119 35-171 1-136 (334)
56 TIGR01546 GAPDH-II_archae glyc 98.5 5.2E-07 1.1E-11 82.1 8.0 94 38-138 1-108 (333)
57 PLN02700 homoserine dehydrogen 98.4 3.5E-06 7.5E-11 77.9 12.6 162 35-210 3-204 (377)
58 PRK11863 N-acetyl-gamma-glutam 98.4 4E-06 8.6E-11 75.8 12.5 107 34-170 1-122 (313)
59 COG0002 ArgC Acetylglutamate s 98.4 1.7E-06 3.8E-11 78.6 9.5 97 34-135 1-99 (349)
60 PRK09466 metL bifunctional asp 98.4 4.7E-06 1E-10 83.8 13.3 164 34-208 457-638 (810)
61 PRK06598 aspartate-semialdehyd 98.4 6.5E-06 1.4E-10 75.9 12.6 118 35-169 1-139 (369)
62 PRK07634 pyrroline-5-carboxyla 98.3 1.1E-05 2.3E-10 69.2 12.6 120 35-169 4-128 (245)
63 PF00044 Gp_dh_N: Glyceraldehy 98.3 3.7E-06 7.9E-11 68.5 8.6 99 36-138 1-121 (151)
64 PLN02383 aspartate semialdehyd 98.3 1.8E-05 3.9E-10 72.4 14.1 122 34-170 6-145 (344)
65 PRK11559 garR tartronate semia 98.3 1.4E-05 3.1E-10 70.5 13.1 115 35-165 2-123 (296)
66 PRK14618 NAD(P)H-dependent gly 98.3 3.7E-06 8E-11 75.6 9.4 125 34-168 3-140 (328)
67 smart00859 Semialdhyde_dh Semi 98.3 4.6E-06 1E-10 64.4 8.6 94 37-138 1-100 (122)
68 PRK11880 pyrroline-5-carboxyla 98.2 1E-05 2.2E-10 70.4 10.6 102 34-147 1-104 (267)
69 PRK05472 redox-sensing transcr 98.2 7.7E-06 1.7E-10 69.6 9.3 95 34-138 83-179 (213)
70 TIGR01296 asd_B aspartate-semi 98.2 1.8E-05 3.9E-10 72.1 12.1 86 37-134 1-89 (339)
71 TIGR01851 argC_other N-acetyl- 98.2 2.5E-05 5.4E-10 70.5 12.6 106 36-171 2-122 (310)
72 PRK06476 pyrroline-5-carboxyla 98.2 1.7E-05 3.8E-10 68.9 11.1 114 36-164 1-117 (258)
73 PRK08955 glyceraldehyde-3-phos 98.2 6.9E-06 1.5E-10 74.9 8.1 96 35-136 2-118 (334)
74 PF03807 F420_oxidored: NADP o 98.1 1.8E-05 3.8E-10 58.3 8.7 87 37-135 1-92 (96)
75 COG0136 Asd Aspartate-semialde 98.1 4.1E-05 8.8E-10 69.6 12.4 151 35-205 1-167 (334)
76 KOG1255 Succinyl-CoA synthetas 98.1 1.5E-05 3.3E-10 69.4 9.2 162 35-220 38-204 (329)
77 PRK12490 6-phosphogluconate de 98.1 6.2E-05 1.3E-09 67.0 12.9 113 36-161 1-117 (299)
78 PRK07679 pyrroline-5-carboxyla 98.1 5.6E-05 1.2E-09 66.5 12.4 118 36-169 4-128 (279)
79 PLN02358 glyceraldehyde-3-phos 98.1 1.1E-05 2.5E-10 73.5 7.9 96 35-135 5-124 (338)
80 TIGR02717 AcCoA-syn-alpha acet 98.1 5.7E-05 1.2E-09 71.2 12.5 113 36-169 8-132 (447)
81 PRK06928 pyrroline-5-carboxyla 98.1 5.5E-05 1.2E-09 66.8 11.6 118 35-169 1-126 (277)
82 PRK09599 6-phosphogluconate de 98.0 0.00012 2.6E-09 65.2 13.2 118 36-166 1-122 (301)
83 TIGR01532 E4PD_g-proteo D-eryt 98.0 2E-05 4.4E-10 71.5 8.0 97 37-138 1-122 (325)
84 PRK00094 gpsA NAD(P)H-dependen 98.0 3.7E-05 8.1E-10 68.2 9.6 121 35-166 1-139 (325)
85 PRK06728 aspartate-semialdehyd 98.0 4.6E-05 9.9E-10 69.9 9.9 87 36-135 6-97 (347)
86 TIGR01505 tartro_sem_red 2-hyd 98.0 0.00013 2.8E-09 64.4 12.4 112 37-164 1-119 (291)
87 PRK05447 1-deoxy-D-xylulose 5- 97.9 8.2E-05 1.8E-09 69.0 10.3 97 35-135 1-120 (385)
88 PLN02688 pyrroline-5-carboxyla 97.9 9.9E-05 2.1E-09 64.1 10.4 112 36-166 1-120 (266)
89 TIGR03450 mycothiol_INO1 inosi 97.9 0.00016 3.6E-09 65.7 11.7 133 36-174 1-194 (351)
90 PRK15059 tartronate semialdehy 97.9 0.00027 5.8E-09 63.0 13.0 111 36-163 1-118 (292)
91 COG0345 ProC Pyrroline-5-carbo 97.9 0.00011 2.3E-09 65.1 10.2 116 35-167 1-121 (266)
92 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 4.7E-05 1E-09 61.7 7.3 124 37-169 1-139 (157)
93 TIGR00872 gnd_rel 6-phosphoglu 97.9 0.00027 5.8E-09 63.0 12.6 115 36-163 1-118 (298)
94 PTZ00023 glyceraldehyde-3-phos 97.9 5.2E-05 1.1E-09 69.2 8.0 99 35-137 2-121 (337)
95 PRK07680 late competence prote 97.9 0.00019 4.1E-09 63.0 11.3 100 36-147 1-106 (273)
96 PRK15461 NADH-dependent gamma- 97.9 0.00027 5.9E-09 62.9 12.3 116 35-166 1-123 (296)
97 PRK14620 NAD(P)H-dependent gly 97.8 0.00039 8.5E-09 62.3 12.9 99 36-142 1-111 (326)
98 cd01076 NAD_bind_1_Glu_DH NAD( 97.8 9.9E-05 2.1E-09 63.8 8.5 118 34-167 30-161 (227)
99 PF10727 Rossmann-like: Rossma 97.8 2.5E-05 5.4E-10 61.9 4.3 95 33-142 8-108 (127)
100 PRK15425 gapA glyceraldehyde-3 97.8 7.2E-05 1.6E-09 68.1 7.7 98 35-137 2-120 (331)
101 PRK12491 pyrroline-5-carboxyla 97.8 0.00015 3.2E-09 64.1 9.4 117 36-169 3-126 (272)
102 COG0240 GpsA Glycerol-3-phosph 97.7 0.00025 5.5E-09 64.4 10.3 126 35-170 1-142 (329)
103 PLN02237 glyceraldehyde-3-phos 97.7 9.6E-05 2.1E-09 69.5 7.7 99 34-137 74-196 (442)
104 PTZ00431 pyrroline carboxylate 97.7 0.00036 7.8E-09 61.0 10.9 94 36-149 4-102 (260)
105 PRK13535 erythrose 4-phosphate 97.7 7.8E-05 1.7E-09 68.0 6.9 98 35-137 1-122 (336)
106 PLN02256 arogenate dehydrogena 97.7 0.00057 1.2E-08 61.5 12.2 120 32-168 33-157 (304)
107 PTZ00345 glycerol-3-phosphate 97.7 0.00052 1.1E-08 63.3 12.2 129 34-170 10-167 (365)
108 PRK07729 glyceraldehyde-3-phos 97.7 0.0001 2.3E-09 67.4 7.4 98 35-137 2-120 (343)
109 PLN02712 arogenate dehydrogena 97.7 0.00053 1.2E-08 67.9 12.6 120 33-169 50-174 (667)
110 TIGR03376 glycerol3P_DH glycer 97.7 8.9E-05 1.9E-09 67.8 6.6 126 37-170 1-154 (342)
111 PRK14619 NAD(P)H-dependent gly 97.7 0.00051 1.1E-08 61.4 11.0 107 34-168 3-117 (308)
112 COG2344 AT-rich DNA-binding pr 97.7 0.00017 3.7E-09 60.8 7.4 91 32-137 81-177 (211)
113 PRK07403 glyceraldehyde-3-phos 97.7 9.6E-05 2.1E-09 67.5 6.4 98 35-137 1-121 (337)
114 PLN03096 glyceraldehyde-3-phos 97.6 0.00013 2.8E-09 67.9 7.1 99 34-137 59-181 (395)
115 PLN02712 arogenate dehydrogena 97.6 0.001 2.2E-08 65.9 13.4 121 33-169 367-491 (667)
116 PTZ00434 cytosolic glyceraldeh 97.6 0.0003 6.5E-09 64.7 8.7 34 35-69 3-40 (361)
117 TIGR01692 HIBADH 3-hydroxyisob 97.6 0.00094 2E-08 59.1 11.4 108 40-163 1-115 (288)
118 PF05368 NmrA: NmrA-like famil 97.5 0.00074 1.6E-08 57.1 9.8 121 38-167 1-146 (233)
119 PLN02272 glyceraldehyde-3-phos 97.5 0.00032 7E-09 65.7 7.8 100 35-138 85-207 (421)
120 COG4693 PchG Oxidoreductase (N 97.5 0.00046 9.9E-09 61.6 8.3 113 35-161 4-121 (361)
121 COG2910 Putative NADH-flavin r 97.5 0.0012 2.6E-08 55.8 10.2 33 36-69 1-33 (211)
122 PRK07531 bifunctional 3-hydrox 97.4 0.0015 3.2E-08 62.4 11.4 117 36-164 5-140 (495)
123 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0011 2.3E-08 57.0 9.5 118 34-167 22-152 (217)
124 CHL00194 ycf39 Ycf39; Provisio 97.4 0.0016 3.5E-08 57.9 10.7 111 36-160 1-140 (317)
125 PF03721 UDPG_MGDP_dh_N: UDP-g 97.4 0.00083 1.8E-08 56.2 8.0 123 36-167 1-155 (185)
126 COG1023 Gnd Predicted 6-phosph 97.4 0.00099 2.1E-08 58.5 8.7 95 36-139 1-122 (300)
127 TIGR00715 precor6x_red precorr 97.4 0.00076 1.6E-08 59.4 8.0 93 36-134 1-96 (256)
128 PRK09414 glutamate dehydrogena 97.4 0.0016 3.6E-08 61.5 10.7 118 35-165 232-367 (445)
129 PRK07502 cyclohexadienyl dehyd 97.3 0.0042 9E-08 55.4 12.6 110 35-160 6-121 (307)
130 PRK08655 prephenate dehydrogen 97.3 0.0029 6.2E-08 59.6 12.0 111 36-161 1-114 (437)
131 cd01065 NAD_bind_Shikimate_DH 97.3 0.00071 1.5E-08 53.6 6.8 110 35-160 19-136 (155)
132 TIGR03026 NDP-sugDHase nucleot 97.3 0.0025 5.4E-08 59.2 11.4 123 36-169 1-159 (411)
133 PRK12439 NAD(P)H-dependent gly 97.3 0.0022 4.7E-08 58.3 10.4 127 34-169 6-147 (341)
134 PF13460 NAD_binding_10: NADH( 97.3 0.002 4.4E-08 52.0 9.1 81 38-134 1-93 (183)
135 PLN02353 probable UDP-glucose 97.3 0.004 8.6E-08 59.4 12.3 124 35-166 1-159 (473)
136 PLN02522 ATP citrate (pro-S)-l 97.3 0.0014 2.9E-08 64.2 9.2 125 35-169 10-141 (608)
137 PRK08618 ornithine cyclodeamin 97.3 0.00039 8.5E-09 62.8 5.1 91 36-137 128-222 (325)
138 PLN02350 phosphogluconate dehy 97.2 0.0054 1.2E-07 58.8 12.8 119 33-160 4-129 (493)
139 PTZ00142 6-phosphogluconate de 97.2 0.0056 1.2E-07 58.3 12.8 117 35-160 1-123 (470)
140 TIGR00465 ilvC ketol-acid redu 97.2 0.0027 5.8E-08 57.5 10.0 113 36-168 4-121 (314)
141 TIGR01534 GAPDH-I glyceraldehy 97.2 0.0013 2.8E-08 60.0 7.9 97 37-137 1-121 (327)
142 PF07755 DUF1611: Protein of u 97.2 0.00084 1.8E-08 60.4 6.5 85 67-160 1-91 (301)
143 PRK07417 arogenate dehydrogena 97.2 0.0044 9.6E-08 54.6 10.7 99 36-150 1-103 (279)
144 KOG0409 Predicted dehydrogenas 97.2 0.0062 1.3E-07 54.9 11.5 134 15-163 15-155 (327)
145 TIGR02853 spore_dpaA dipicolin 97.1 0.0015 3.2E-08 58.3 7.4 109 34-164 150-263 (287)
146 COG2084 MmsB 3-hydroxyisobutyr 97.1 0.0083 1.8E-07 53.7 11.6 114 36-164 1-121 (286)
147 PRK08507 prephenate dehydrogen 97.1 0.012 2.5E-07 51.7 12.2 85 36-136 1-89 (275)
148 COG3367 Uncharacterized conser 97.0 0.0026 5.6E-08 57.7 7.8 106 48-160 15-126 (339)
149 cd05313 NAD_bind_2_Glu_DH NAD( 97.0 0.0094 2E-07 52.5 11.2 119 34-166 37-178 (254)
150 PF04321 RmlD_sub_bind: RmlD s 97.0 0.0025 5.4E-08 56.4 7.3 79 36-134 1-97 (286)
151 PRK11908 NAD-dependent epimera 97.0 0.0059 1.3E-07 54.7 9.7 33 35-67 1-33 (347)
152 PRK08818 prephenate dehydrogen 96.9 0.016 3.5E-07 53.6 12.5 71 34-128 3-73 (370)
153 PRK06130 3-hydroxybutyryl-CoA 96.9 0.0032 7E-08 56.0 7.7 32 35-69 4-35 (311)
154 TIGR00873 gnd 6-phosphoglucona 96.9 0.011 2.4E-07 56.3 11.6 115 37-160 1-120 (467)
155 PLN02696 1-deoxy-D-xylulose-5- 96.9 0.013 2.7E-07 55.6 11.8 119 34-160 56-203 (454)
156 PRK07066 3-hydroxybutyryl-CoA 96.9 0.013 2.7E-07 53.3 11.4 32 35-69 7-38 (321)
157 PLN02858 fructose-bisphosphate 96.9 0.013 2.8E-07 62.5 13.1 114 34-163 323-445 (1378)
158 COG4569 MhpF Acetaldehyde dehy 96.9 0.0064 1.4E-07 52.3 8.6 98 33-138 2-103 (310)
159 PRK05808 3-hydroxybutyryl-CoA 96.9 0.0076 1.7E-07 53.0 9.4 32 35-69 3-34 (282)
160 cd01483 E1_enzyme_family Super 96.8 0.015 3.2E-07 45.9 10.1 120 37-164 1-122 (143)
161 PRK08306 dipicolinate synthase 96.8 0.0042 9.2E-08 55.6 7.6 115 34-169 151-269 (296)
162 PLN02858 fructose-bisphosphate 96.8 0.018 3.8E-07 61.5 13.3 114 35-164 4-126 (1378)
163 TIGR03649 ergot_EASG ergot alk 96.8 0.019 4.2E-07 49.8 11.6 120 37-164 1-136 (285)
164 PF00208 ELFV_dehydrog: Glutam 96.8 0.0024 5.2E-08 55.8 5.7 119 35-166 32-171 (244)
165 PRK06046 alanine dehydrogenase 96.8 0.0021 4.6E-08 58.1 5.6 91 35-137 129-224 (326)
166 PRK12475 thiamine/molybdopteri 96.8 0.0089 1.9E-07 54.6 9.5 96 35-138 24-149 (338)
167 COG1810 Uncharacterized protei 96.8 0.03 6.5E-07 48.2 12.0 154 35-211 1-168 (224)
168 PRK08605 D-lactate dehydrogena 96.8 0.0078 1.7E-07 54.7 9.0 106 34-157 145-255 (332)
169 TIGR02355 moeB molybdopterin s 96.8 0.009 1.9E-07 52.0 8.8 96 35-138 24-147 (240)
170 TIGR01745 asd_gamma aspartate- 96.8 0.019 4.2E-07 53.1 11.4 117 36-169 1-138 (366)
171 KOG0455 Homoserine dehydrogena 96.7 0.022 4.7E-07 50.5 11.0 131 35-171 3-153 (364)
172 PLN03139 formate dehydrogenase 96.7 0.02 4.4E-07 53.3 11.4 108 34-158 198-311 (386)
173 KOG4354 N-acetyl-gamma-glutamy 96.7 0.0059 1.3E-07 53.7 7.3 99 30-136 14-117 (340)
174 TIGR02371 ala_DH_arch alanine 96.7 0.0028 6E-08 57.4 5.5 91 36-137 129-223 (325)
175 COG2099 CobK Precorrin-6x redu 96.7 0.029 6.3E-07 49.4 11.3 132 34-177 1-145 (257)
176 PRK08289 glyceraldehyde-3-phos 96.7 0.0097 2.1E-07 56.6 8.9 36 33-69 125-164 (477)
177 COG1091 RfbD dTDP-4-dehydrorha 96.7 0.0073 1.6E-07 54.0 7.6 78 36-134 1-96 (281)
178 COG1832 Predicted CoA-binding 96.6 0.023 4.9E-07 45.7 9.6 103 36-158 17-122 (140)
179 cd01075 NAD_bind_Leu_Phe_Val_D 96.6 0.018 4E-07 48.5 9.7 87 35-138 28-115 (200)
180 KOG2380 Prephenate dehydrogena 96.6 0.0096 2.1E-07 54.8 8.3 101 35-151 52-156 (480)
181 PRK07574 formate dehydrogenase 96.6 0.023 4.9E-07 52.9 11.0 108 34-158 191-304 (385)
182 PRK09260 3-hydroxybutyryl-CoA 96.6 0.02 4.4E-07 50.5 10.3 99 36-145 2-125 (288)
183 COG1004 Ugd Predicted UDP-gluc 96.6 0.024 5.2E-07 52.9 11.0 120 36-165 1-151 (414)
184 KOG1502 Flavonol reductase/cin 96.6 0.019 4E-07 52.4 10.1 95 34-135 5-126 (327)
185 PRK05479 ketol-acid reductoiso 96.6 0.02 4.3E-07 52.3 10.4 94 35-144 17-114 (330)
186 TIGR01915 npdG NADPH-dependent 96.6 0.025 5.4E-07 48.0 10.3 121 36-169 1-147 (219)
187 PRK07819 3-hydroxybutyryl-CoA 96.6 0.024 5.1E-07 50.4 10.5 31 36-69 6-36 (286)
188 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.012 2.6E-07 52.9 8.5 81 34-127 177-259 (311)
189 COG1064 AdhP Zn-dependent alco 96.5 0.026 5.6E-07 51.7 10.6 92 37-139 169-262 (339)
190 PRK08293 3-hydroxybutyryl-CoA 96.5 0.011 2.4E-07 52.2 7.9 32 35-69 3-34 (287)
191 PRK06129 3-hydroxyacyl-CoA deh 96.5 0.021 4.6E-07 50.9 9.7 32 36-70 3-34 (308)
192 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0093 2E-07 49.5 6.9 98 37-144 1-121 (180)
193 PRK11199 tyrA bifunctional cho 96.5 0.039 8.4E-07 51.0 11.5 34 34-69 97-130 (374)
194 PLN00016 RNA-binding protein; 96.5 0.016 3.5E-07 52.8 8.9 96 33-134 50-161 (378)
195 PRK08328 hypothetical protein; 96.5 0.023 5E-07 49.0 9.4 94 35-138 27-151 (231)
196 cd00757 ThiF_MoeB_HesA_family 96.5 0.043 9.2E-07 47.0 11.0 33 35-69 21-53 (228)
197 PLN02427 UDP-apiose/xylose syn 96.4 0.016 3.4E-07 52.9 8.6 36 32-67 11-46 (386)
198 PRK06522 2-dehydropantoate 2-r 96.4 0.039 8.5E-07 48.3 10.8 95 36-142 1-105 (304)
199 PRK11150 rfaD ADP-L-glycero-D- 96.4 0.019 4.1E-07 50.3 8.7 32 38-70 2-33 (308)
200 TIGR01214 rmlD dTDP-4-dehydror 96.4 0.021 4.4E-07 49.3 8.8 59 37-115 1-59 (287)
201 PRK06901 aspartate-semialdehyd 96.4 0.011 2.4E-07 53.7 7.2 115 35-169 3-134 (322)
202 PRK07530 3-hydroxybutyryl-CoA 96.4 0.023 5E-07 50.2 9.2 31 36-69 5-35 (292)
203 PRK11064 wecC UDP-N-acetyl-D-m 96.4 0.049 1.1E-06 51.0 11.7 32 35-69 3-34 (415)
204 PRK03369 murD UDP-N-acetylmura 96.4 0.094 2E-06 49.9 13.7 136 36-194 13-174 (488)
205 TIGR00243 Dxr 1-deoxy-D-xylulo 96.4 0.041 8.9E-07 51.2 10.8 35 35-69 1-36 (389)
206 KOG2742 Predicted oxidoreducta 96.3 0.0052 1.1E-07 56.1 4.8 155 38-205 5-163 (367)
207 PRK14806 bifunctional cyclohex 96.3 0.077 1.7E-06 52.8 13.4 103 36-152 4-111 (735)
208 PTZ00353 glycosomal glyceralde 96.3 0.0052 1.1E-07 56.3 4.7 32 36-68 3-34 (342)
209 PF00899 ThiF: ThiF family; I 96.3 0.036 7.7E-07 43.4 8.9 120 36-163 3-124 (135)
210 TIGR02356 adenyl_thiF thiazole 96.3 0.042 9E-07 46.4 9.8 122 35-165 21-145 (202)
211 PRK06545 prephenate dehydrogen 96.3 0.081 1.7E-06 48.4 12.4 102 37-151 2-108 (359)
212 PRK06035 3-hydroxyacyl-CoA deh 96.3 0.015 3.3E-07 51.3 7.3 31 36-69 4-34 (291)
213 PLN02545 3-hydroxybutyryl-CoA 96.3 0.02 4.3E-07 50.7 8.0 32 35-69 4-35 (295)
214 PLN02477 glutamate dehydrogena 96.3 0.046 1E-06 51.3 10.8 115 35-166 206-335 (410)
215 PRK06444 prephenate dehydrogen 96.2 0.016 3.5E-07 49.1 6.9 28 36-64 1-28 (197)
216 cd01485 E1-1_like Ubiquitin ac 96.2 0.062 1.3E-06 45.3 10.3 34 35-70 19-52 (198)
217 PLN02778 3,5-epimerase/4-reduc 96.2 0.054 1.2E-06 48.0 10.4 35 30-65 4-38 (298)
218 PRK06091 membrane protein FdrA 96.2 0.028 6E-07 54.5 9.0 75 87-165 101-175 (555)
219 COG1086 Predicted nucleoside-d 96.2 0.031 6.7E-07 54.3 9.2 39 31-70 112-150 (588)
220 PRK08229 2-dehydropantoate 2-r 96.2 0.046 1E-06 49.0 9.9 98 34-142 1-112 (341)
221 PLN00106 malate dehydrogenase 96.1 0.032 7E-07 50.7 8.9 49 21-69 4-52 (323)
222 PRK05476 S-adenosyl-L-homocyst 96.1 0.031 6.8E-07 52.7 9.0 103 34-152 211-314 (425)
223 PRK09987 dTDP-4-dehydrorhamnos 96.1 0.039 8.5E-07 48.7 9.2 86 36-138 1-104 (299)
224 PTZ00079 NADP-specific glutama 96.1 0.076 1.7E-06 50.5 11.5 118 35-166 237-377 (454)
225 PRK14030 glutamate dehydrogena 96.1 0.042 9.2E-07 52.1 9.8 96 35-138 228-344 (445)
226 PLN02695 GDP-D-mannose-3',5'-e 96.1 0.043 9.3E-07 50.1 9.6 35 33-68 19-53 (370)
227 cd01336 MDH_cytoplasmic_cytoso 96.1 0.047 1E-06 49.5 9.6 71 35-113 2-85 (325)
228 cd01487 E1_ThiF_like E1_ThiF_l 96.1 0.061 1.3E-06 44.4 9.5 32 37-70 1-32 (174)
229 PF02826 2-Hacid_dh_C: D-isome 96.1 0.012 2.6E-07 48.5 5.2 65 34-114 35-99 (178)
230 PF01488 Shikimate_DH: Shikima 96.0 0.012 2.7E-07 46.4 5.0 72 34-115 11-84 (135)
231 TIGR02992 ectoine_eutC ectoine 96.0 0.014 3E-07 52.8 5.8 91 35-136 129-224 (326)
232 PRK05865 hypothetical protein; 96.0 0.063 1.4E-06 54.8 11.0 109 36-160 1-121 (854)
233 PF02670 DXP_reductoisom: 1-de 95.9 0.044 9.6E-07 43.6 7.7 32 38-69 1-33 (129)
234 PRK14031 glutamate dehydrogena 95.9 0.063 1.4E-06 50.9 9.9 96 35-138 228-343 (444)
235 PLN02166 dTDP-glucose 4,6-dehy 95.9 0.044 9.6E-07 51.6 8.8 30 36-66 121-150 (436)
236 PRK08291 ectoine utilization p 95.9 0.013 2.9E-07 53.0 5.2 89 35-134 132-224 (330)
237 PRK13243 glyoxylate reductase; 95.9 0.05 1.1E-06 49.5 8.9 106 34-157 149-259 (333)
238 PLN02657 3,8-divinyl protochlo 95.9 0.063 1.4E-06 49.6 9.6 35 34-69 59-93 (390)
239 PRK12480 D-lactate dehydrogena 95.8 0.057 1.2E-06 49.1 9.1 103 34-157 145-253 (330)
240 PLN03209 translocon at the inn 95.8 0.097 2.1E-06 51.2 11.1 32 36-68 81-112 (576)
241 TIGR00936 ahcY adenosylhomocys 95.8 0.073 1.6E-06 49.9 10.0 86 34-135 194-280 (406)
242 PRK00258 aroE shikimate 5-dehy 95.8 0.051 1.1E-06 47.9 8.5 127 35-179 123-255 (278)
243 PRK07688 thiamine/molybdopteri 95.8 0.13 2.8E-06 47.0 11.3 96 35-138 24-149 (339)
244 PRK05690 molybdopterin biosynt 95.8 0.13 2.9E-06 44.7 10.9 33 35-69 32-64 (245)
245 cd01492 Aos1_SUMO Ubiquitin ac 95.8 0.096 2.1E-06 44.1 9.7 33 36-70 22-54 (197)
246 PRK15057 UDP-glucose 6-dehydro 95.8 0.18 3.9E-06 46.9 12.3 30 36-69 1-30 (388)
247 PRK08125 bifunctional UDP-gluc 95.7 0.057 1.2E-06 53.2 9.3 34 35-68 315-348 (660)
248 COG2085 Predicted dinucleotide 95.7 0.082 1.8E-06 45.4 9.0 86 35-134 1-90 (211)
249 PRK15182 Vi polysaccharide bio 95.7 0.093 2E-06 49.4 10.3 31 35-69 6-36 (425)
250 PLN02206 UDP-glucuronate decar 95.7 0.064 1.4E-06 50.5 9.2 31 35-66 119-149 (442)
251 PRK08223 hypothetical protein; 95.7 0.076 1.7E-06 47.6 9.1 32 36-69 28-59 (287)
252 PRK01710 murD UDP-N-acetylmura 95.7 0.34 7.3E-06 45.6 13.9 138 36-192 15-174 (458)
253 PRK07340 ornithine cyclodeamin 95.7 0.017 3.6E-07 51.9 4.9 90 36-137 126-218 (304)
254 COG0287 TyrA Prephenate dehydr 95.7 0.17 3.7E-06 45.1 11.2 105 34-152 2-112 (279)
255 PRK14106 murD UDP-N-acetylmura 95.6 0.3 6.4E-06 45.5 13.3 121 36-172 6-148 (450)
256 PF01073 3Beta_HSD: 3-beta hyd 95.6 0.083 1.8E-06 46.7 9.2 94 39-138 1-115 (280)
257 cd00755 YgdL_like Family of ac 95.6 0.14 3E-06 44.4 10.3 33 35-69 11-43 (231)
258 PF00056 Ldh_1_N: lactate/mala 95.6 0.018 3.9E-07 45.9 4.3 127 36-181 1-133 (141)
259 PRK00141 murD UDP-N-acetylmura 95.6 0.46 1E-05 45.0 14.6 143 29-192 9-178 (473)
260 COG1179 Dinucleotide-utilizing 95.6 0.21 4.4E-06 44.0 11.1 92 37-135 32-151 (263)
261 PRK13403 ketol-acid reductoiso 95.6 0.075 1.6E-06 48.6 8.7 146 36-211 17-166 (335)
262 PRK05600 thiamine biosynthesis 95.6 0.12 2.5E-06 47.9 10.1 96 35-138 41-164 (370)
263 TIGR03023 WcaJ_sugtrans Undeca 95.5 0.16 3.5E-06 47.6 11.2 92 35-140 128-227 (451)
264 TIGR03466 HpnA hopanoid-associ 95.5 0.066 1.4E-06 46.8 8.1 33 36-69 1-33 (328)
265 COG0569 TrkA K+ transport syst 95.5 0.18 4E-06 43.3 10.7 125 36-174 1-131 (225)
266 PRK04663 murD UDP-N-acetylmura 95.5 0.47 1E-05 44.3 14.2 135 35-192 7-163 (438)
267 cd01491 Ube1_repeat1 Ubiquitin 95.5 0.19 4E-06 45.1 11.0 119 36-166 20-140 (286)
268 PRK15181 Vi polysaccharide bio 95.5 0.12 2.5E-06 46.6 9.8 33 34-67 14-46 (348)
269 KOG2018 Predicted dinucleotide 95.5 0.13 2.7E-06 47.1 9.6 120 37-163 76-244 (430)
270 PLN02214 cinnamoyl-CoA reducta 95.5 0.13 2.8E-06 46.4 9.9 34 34-68 9-42 (342)
271 PTZ00117 malate dehydrogenase; 95.5 0.045 9.8E-07 49.4 7.0 72 34-114 4-81 (319)
272 COG0111 SerA Phosphoglycerate 95.5 0.13 2.7E-06 46.9 9.9 106 35-158 142-253 (324)
273 PRK10217 dTDP-glucose 4,6-dehy 95.4 0.047 1E-06 48.8 7.0 34 35-69 1-34 (355)
274 PRK12921 2-dehydropantoate 2-r 95.4 0.098 2.1E-06 45.9 8.9 95 36-142 1-107 (305)
275 COG0771 MurD UDP-N-acetylmuram 95.4 0.32 7E-06 46.2 12.7 146 35-199 7-174 (448)
276 PRK05086 malate dehydrogenase; 95.4 0.17 3.7E-06 45.6 10.5 34 36-69 1-35 (312)
277 PRK10124 putative UDP-glucose 95.4 0.2 4.4E-06 47.6 11.4 84 35-135 143-235 (463)
278 PLN02260 probable rhamnose bio 95.4 0.091 2E-06 51.6 9.4 31 32-63 377-407 (668)
279 PRK12320 hypothetical protein; 95.4 0.16 3.4E-06 50.9 11.0 88 36-135 1-99 (699)
280 PLN00141 Tic62-NAD(P)-related 95.4 0.28 6.1E-06 41.9 11.2 34 35-69 17-50 (251)
281 PRK06141 ornithine cyclodeamin 95.4 0.028 6.1E-07 50.6 5.2 88 36-134 126-216 (314)
282 PRK08268 3-hydroxy-acyl-CoA de 95.3 0.11 2.3E-06 50.0 9.4 31 36-69 8-38 (507)
283 PRK09496 trkA potassium transp 95.3 0.094 2E-06 48.7 8.8 127 36-174 1-135 (453)
284 TIGR02197 heptose_epim ADP-L-g 95.3 0.13 2.8E-06 44.8 9.1 30 38-69 1-31 (314)
285 COG1260 INO1 Myo-inositol-1-ph 95.3 0.087 1.9E-06 48.3 8.1 126 33-160 3-188 (362)
286 PRK06436 glycerate dehydrogena 95.3 0.17 3.7E-06 45.5 10.0 60 34-114 121-181 (303)
287 PRK06199 ornithine cyclodeamin 95.3 0.048 1.1E-06 50.6 6.6 97 36-141 156-264 (379)
288 PRK02472 murD UDP-N-acetylmura 95.2 0.59 1.3E-05 43.5 13.9 142 36-195 6-168 (447)
289 COG0300 DltE Short-chain dehyd 95.2 0.2 4.4E-06 44.4 10.1 88 32-139 3-93 (265)
290 cd00401 AdoHcyase S-adenosyl-L 95.1 0.11 2.3E-06 48.9 8.6 87 35-137 202-290 (413)
291 KOG2733 Uncharacterized membra 95.1 0.038 8.2E-07 51.1 5.3 130 35-173 5-159 (423)
292 KOG1198 Zinc-binding oxidoredu 95.1 0.086 1.9E-06 48.4 7.8 101 33-139 156-258 (347)
293 PRK05597 molybdopterin biosynt 95.1 0.24 5.2E-06 45.5 10.7 96 35-138 28-151 (355)
294 TIGR03570 NeuD_NnaD sugar O-ac 95.1 0.3 6.5E-06 39.6 10.2 85 37-133 1-86 (201)
295 COG0027 PurT Formate-dependent 95.1 0.17 3.7E-06 46.2 9.3 128 27-167 4-160 (394)
296 TIGR02354 thiF_fam2 thiamine b 95.1 0.22 4.7E-06 42.1 9.5 34 35-70 21-54 (200)
297 PRK15469 ghrA bifunctional gly 95.1 0.19 4.2E-06 45.3 9.8 61 36-113 137-197 (312)
298 PF07991 IlvN: Acetohydroxy ac 95.1 0.12 2.6E-06 42.8 7.6 148 35-213 4-157 (165)
299 PRK06249 2-dehydropantoate 2-r 95.0 0.18 3.9E-06 45.0 9.4 101 33-142 3-111 (313)
300 PRK06407 ornithine cyclodeamin 95.0 0.061 1.3E-06 48.3 6.4 91 36-137 118-213 (301)
301 PRK12549 shikimate 5-dehydroge 95.0 0.14 3E-06 45.5 8.6 124 36-179 128-261 (284)
302 PTZ00325 malate dehydrogenase; 95.0 0.26 5.7E-06 44.8 10.4 37 33-69 6-42 (321)
303 PRK15116 sulfur acceptor prote 95.0 0.25 5.4E-06 43.9 10.1 33 35-69 30-62 (268)
304 PRK00257 erythronate-4-phospha 95.0 0.23 4.9E-06 46.2 10.1 59 35-113 116-174 (381)
305 TIGR01181 dTDP_gluc_dehyt dTDP 95.0 0.2 4.3E-06 43.3 9.3 30 37-66 1-31 (317)
306 KOG2711 Glycerol-3-phosphate d 95.0 0.27 5.8E-06 45.3 10.2 139 23-169 9-178 (372)
307 COG0743 Dxr 1-deoxy-D-xylulose 95.0 0.15 3.2E-06 47.2 8.7 34 35-68 1-35 (385)
308 TIGR01327 PGDH D-3-phosphoglyc 95.0 0.12 2.6E-06 49.8 8.6 65 35-115 138-202 (525)
309 PF02593 dTMP_synthase: Thymid 94.9 0.42 9.1E-06 41.3 11.0 147 44-210 5-164 (217)
310 PRK08057 cobalt-precorrin-6x r 94.9 0.19 4E-06 44.1 9.0 123 34-176 1-143 (248)
311 PRK15438 erythronate-4-phospha 94.9 0.35 7.6E-06 45.0 11.2 60 35-114 116-175 (378)
312 COG0373 HemA Glutamyl-tRNA red 94.9 0.097 2.1E-06 49.2 7.5 86 34-132 177-267 (414)
313 PTZ00082 L-lactate dehydrogena 94.9 1.3 2.7E-05 40.2 14.5 71 33-113 4-81 (321)
314 TIGR03025 EPS_sugtrans exopoly 94.9 0.39 8.4E-06 45.0 11.5 86 36-135 126-220 (445)
315 PRK08644 thiamine biosynthesis 94.9 0.31 6.7E-06 41.5 9.9 34 35-70 28-61 (212)
316 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.8 0.13 2.7E-06 49.6 8.3 32 35-69 5-36 (503)
317 COG3268 Uncharacterized conser 94.8 0.23 5E-06 45.6 9.5 147 36-200 7-170 (382)
318 KOG1203 Predicted dehydrogenas 94.8 0.2 4.3E-06 47.1 9.3 40 29-69 73-112 (411)
319 PLN02662 cinnamyl-alcohol dehy 94.8 0.14 3E-06 44.9 8.0 32 36-68 5-36 (322)
320 PRK10675 UDP-galactose-4-epime 94.8 0.22 4.7E-06 44.0 9.3 31 36-67 1-31 (338)
321 PLN02650 dihydroflavonol-4-red 94.8 0.12 2.6E-06 46.3 7.6 34 34-68 4-37 (351)
322 COG1087 GalE UDP-glucose 4-epi 94.7 0.14 2.9E-06 46.5 7.7 73 36-115 1-76 (329)
323 COG1052 LdhA Lactate dehydroge 94.7 0.43 9.2E-06 43.5 11.0 105 35-157 146-255 (324)
324 PRK08177 short chain dehydroge 94.7 0.21 4.5E-06 41.7 8.4 33 35-68 1-33 (225)
325 PRK07878 molybdopterin biosynt 94.7 0.42 9.1E-06 44.4 11.1 96 35-140 42-168 (392)
326 PRK04308 murD UDP-N-acetylmura 94.7 1.7 3.7E-05 40.6 15.3 141 36-192 6-169 (445)
327 KOG0172 Lysine-ketoglutarate r 94.6 0.094 2E-06 49.0 6.5 121 35-170 2-130 (445)
328 PRK05693 short chain dehydroge 94.6 0.34 7.4E-06 41.6 9.7 32 35-67 1-32 (274)
329 cd00704 MDH Malate dehydrogena 94.6 0.16 3.4E-06 46.1 7.9 24 36-59 1-24 (323)
330 PRK08762 molybdopterin biosynt 94.5 0.37 8.1E-06 44.4 10.3 96 35-138 135-258 (376)
331 PRK06182 short chain dehydroge 94.5 0.66 1.4E-05 39.8 11.3 31 36-67 4-34 (273)
332 TIGR02622 CDP_4_6_dhtase CDP-g 94.5 0.38 8.3E-06 43.1 10.2 31 36-67 5-35 (349)
333 PTZ00075 Adenosylhomocysteinas 94.5 0.26 5.7E-06 47.2 9.4 87 32-134 251-338 (476)
334 PRK13581 D-3-phosphoglycerate 94.5 0.22 4.7E-06 48.1 9.0 65 34-115 139-203 (526)
335 PLN02240 UDP-glucose 4-epimera 94.5 0.37 8.1E-06 42.8 10.0 31 36-67 6-36 (352)
336 PRK00045 hemA glutamyl-tRNA re 94.5 0.086 1.9E-06 49.4 6.1 80 35-127 182-266 (423)
337 PLN02986 cinnamyl-alcohol dehy 94.4 0.19 4E-06 44.4 7.9 33 36-69 6-38 (322)
338 PLN00198 anthocyanidin reducta 94.4 0.17 3.7E-06 45.0 7.7 35 33-68 7-41 (338)
339 PRK06823 ornithine cyclodeamin 94.4 0.083 1.8E-06 47.8 5.7 91 36-137 129-223 (315)
340 PRK14982 acyl-ACP reductase; P 94.4 0.098 2.1E-06 48.0 6.1 34 35-69 155-189 (340)
341 TIGR01777 yfcH conserved hypot 94.4 0.31 6.8E-06 41.7 9.0 31 38-69 1-31 (292)
342 cd01490 Ube1_repeat2 Ubiquitin 94.4 0.27 5.9E-06 46.6 9.1 31 37-69 1-36 (435)
343 PF10087 DUF2325: Uncharacteri 94.3 0.74 1.6E-05 34.1 9.8 83 37-141 1-87 (97)
344 PLN02260 probable rhamnose bio 94.3 0.47 1E-05 46.6 11.2 34 34-67 5-39 (668)
345 PRK10084 dTDP-glucose 4,6 dehy 94.3 0.12 2.5E-06 46.2 6.4 32 36-68 1-32 (352)
346 PLN02896 cinnamyl-alcohol dehy 94.3 0.1 2.2E-06 46.9 6.0 35 33-68 8-42 (353)
347 cd01337 MDH_glyoxysomal_mitoch 94.2 0.21 4.5E-06 45.2 7.7 34 36-69 1-34 (310)
348 PRK15409 bifunctional glyoxyla 94.2 0.46 9.9E-06 43.1 9.9 66 33-114 143-208 (323)
349 TIGR00507 aroE shikimate 5-deh 94.2 0.33 7.2E-06 42.5 8.8 127 35-179 117-248 (270)
350 PRK06932 glycerate dehydrogena 94.1 0.4 8.7E-06 43.3 9.5 60 34-114 146-205 (314)
351 cd05294 LDH-like_MDH_nadp A la 94.1 0.27 5.9E-06 44.2 8.4 33 36-69 1-34 (309)
352 COG0334 GdhA Glutamate dehydro 94.1 0.3 6.5E-06 45.8 8.8 115 34-165 206-335 (411)
353 TIGR02440 FadJ fatty oxidation 94.1 0.29 6.3E-06 48.9 9.3 35 33-69 302-336 (699)
354 PRK07411 hypothetical protein; 94.1 0.49 1.1E-05 44.0 10.3 98 35-140 38-164 (390)
355 cd05293 LDH_1 A subgroup of L- 94.1 0.14 3.1E-06 46.2 6.5 71 35-113 3-78 (312)
356 PRK05993 short chain dehydroge 94.1 0.52 1.1E-05 40.7 9.8 32 35-67 4-35 (277)
357 PRK14852 hypothetical protein; 94.0 0.39 8.4E-06 49.7 10.1 33 35-69 332-364 (989)
358 TIGR01035 hemA glutamyl-tRNA r 94.0 0.2 4.3E-06 46.9 7.6 81 35-128 180-265 (417)
359 PLN02494 adenosylhomocysteinas 94.0 0.41 8.9E-06 45.8 9.6 105 30-151 249-355 (477)
360 PF02571 CbiJ: Precorrin-6x re 94.0 0.27 5.8E-06 43.2 7.8 128 36-177 1-147 (249)
361 TIGR03022 WbaP_sugtrans Undeca 94.0 0.78 1.7E-05 43.1 11.5 92 35-140 125-225 (456)
362 TIGR01179 galE UDP-glucose-4-e 94.0 0.43 9.3E-06 41.3 9.1 29 37-66 1-29 (328)
363 cd05291 HicDH_like L-2-hydroxy 94.0 0.14 3.1E-06 45.7 6.2 31 37-69 2-33 (306)
364 COG0604 Qor NADPH:quinone redu 94.0 0.34 7.3E-06 43.9 8.7 96 36-139 144-244 (326)
365 PRK05442 malate dehydrogenase; 93.9 0.34 7.4E-06 44.1 8.7 24 34-57 3-26 (326)
366 TIGR01087 murD UDP-N-acetylmur 93.9 1.8 3.8E-05 40.2 13.7 117 37-167 1-139 (433)
367 PLN02989 cinnamyl-alcohol dehy 93.9 0.31 6.7E-06 42.9 8.2 32 35-67 5-36 (325)
368 PLN02725 GDP-4-keto-6-deoxyman 93.9 0.22 4.8E-06 43.1 7.1 57 39-114 1-57 (306)
369 cd01484 E1-2_like Ubiquitin ac 93.9 0.58 1.2E-05 40.7 9.6 31 37-69 1-31 (234)
370 TIGR03589 PseB UDP-N-acetylglu 93.8 0.4 8.7E-06 42.8 8.8 31 36-66 5-36 (324)
371 KOG1494 NAD-dependent malate d 93.8 0.14 3.1E-06 46.0 5.7 37 33-69 26-62 (345)
372 cd01338 MDH_choloroplast_like 93.7 0.23 5.1E-06 45.0 7.2 34 35-69 2-41 (322)
373 PLN02653 GDP-mannose 4,6-dehyd 93.7 0.19 4.2E-06 44.7 6.6 34 34-68 5-38 (340)
374 cd01486 Apg7 Apg7 is an E1-lik 93.7 0.52 1.1E-05 42.7 9.2 31 37-69 1-31 (307)
375 PRK08267 short chain dehydroge 93.7 0.37 8E-06 40.9 8.0 31 35-66 1-31 (260)
376 PRK06719 precorrin-2 dehydroge 93.7 0.47 1E-05 38.5 8.2 81 36-131 14-95 (157)
377 PRK11790 D-3-phosphoglycerate 93.7 0.6 1.3E-05 43.7 10.0 62 34-114 150-211 (409)
378 PRK06718 precorrin-2 dehydroge 93.7 0.57 1.2E-05 39.6 9.0 86 36-133 11-97 (202)
379 PRK06180 short chain dehydroge 93.6 0.36 7.8E-06 41.7 7.9 32 35-67 4-35 (277)
380 PRK12464 1-deoxy-D-xylulose 5- 93.6 0.56 1.2E-05 43.7 9.5 89 40-136 1-116 (383)
381 TIGR01472 gmd GDP-mannose 4,6- 93.6 0.19 4E-06 44.9 6.3 31 37-68 2-32 (343)
382 PLN00203 glutamyl-tRNA reducta 93.5 0.22 4.8E-06 48.2 7.0 83 35-127 266-353 (519)
383 TIGR01809 Shik-DH-AROM shikima 93.5 0.81 1.8E-05 40.6 10.2 127 36-179 126-265 (282)
384 PLN02572 UDP-sulfoquinovose sy 93.5 0.14 3E-06 48.2 5.5 32 34-66 46-77 (442)
385 PRK14851 hypothetical protein; 93.5 0.66 1.4E-05 46.4 10.4 33 35-69 43-75 (679)
386 PRK03803 murD UDP-N-acetylmura 93.5 3.3 7.1E-05 38.7 14.7 119 36-168 7-146 (448)
387 PRK06487 glycerate dehydrogena 93.4 0.6 1.3E-05 42.1 9.4 59 34-114 147-205 (317)
388 PRK06153 hypothetical protein; 93.4 0.54 1.2E-05 44.0 9.1 32 36-69 177-208 (393)
389 TIGR01772 MDH_euk_gproteo mala 93.4 0.42 9.2E-06 43.2 8.2 33 37-69 1-33 (312)
390 TIGR01759 MalateDH-SF1 malate 93.3 0.61 1.3E-05 42.4 9.2 26 34-59 2-27 (323)
391 KOG0023 Alcohol dehydrogenase, 93.3 0.76 1.7E-05 42.1 9.6 97 36-162 183-279 (360)
392 TIGR01746 Thioester-redct thio 93.2 0.64 1.4E-05 40.8 9.0 33 37-69 1-34 (367)
393 PRK15204 undecaprenyl-phosphat 93.2 0.99 2.1E-05 43.1 10.8 87 36-138 147-242 (476)
394 PRK07454 short chain dehydroge 93.2 0.79 1.7E-05 38.3 9.2 32 34-66 5-36 (241)
395 cd05292 LDH_2 A subgroup of L- 93.2 0.3 6.5E-06 43.8 6.9 34 36-70 1-34 (308)
396 PRK10538 malonic semialdehyde 93.1 0.44 9.6E-06 40.3 7.6 31 36-67 1-31 (248)
397 COG0451 WcaG Nucleoside-diphos 93.1 0.74 1.6E-05 39.8 9.1 31 37-68 2-32 (314)
398 PRK11730 fadB multifunctional 93.1 0.64 1.4E-05 46.6 9.8 33 34-69 312-344 (715)
399 PRK06179 short chain dehydroge 93.1 1.8 4E-05 36.8 11.5 31 36-67 5-35 (270)
400 PRK11154 fadJ multifunctional 93.0 0.55 1.2E-05 47.0 9.2 34 34-69 308-341 (708)
401 cd01489 Uba2_SUMO Ubiquitin ac 93.0 0.68 1.5E-05 42.0 9.0 31 37-69 1-31 (312)
402 cd05290 LDH_3 A subgroup of L- 93.0 0.38 8.3E-06 43.3 7.3 32 37-69 1-32 (307)
403 PRK10669 putative cation:proto 93.0 1.1 2.3E-05 43.4 10.9 124 35-175 417-547 (558)
404 cd00650 LDH_MDH_like NAD-depen 93.0 0.21 4.6E-06 43.5 5.5 69 38-112 1-76 (263)
405 PRK07904 short chain dehydroge 92.9 1.1 2.4E-05 38.3 9.9 34 34-67 7-40 (253)
406 cd05311 NAD_bind_2_malic_enz N 92.9 0.76 1.7E-05 39.5 8.8 80 36-126 26-118 (226)
407 COG1042 Acyl-CoA synthetase (N 92.9 0.76 1.6E-05 45.3 9.7 109 37-164 12-130 (598)
408 PRK08340 glucose-1-dehydrogena 92.8 0.69 1.5E-05 39.4 8.4 30 36-66 1-30 (259)
409 PRK07825 short chain dehydroge 92.8 1 2.2E-05 38.5 9.5 79 36-139 6-87 (273)
410 PRK03659 glutathione-regulated 92.8 1.9 4E-05 42.4 12.3 120 35-171 400-526 (601)
411 COG2403 Predicted GTPase [Gene 92.7 0.55 1.2E-05 43.9 7.9 99 32-134 3-113 (449)
412 PRK13940 glutamyl-tRNA reducta 92.7 0.2 4.4E-06 47.0 5.3 71 35-115 181-251 (414)
413 cd08295 double_bond_reductase_ 92.7 0.43 9.4E-06 42.3 7.2 95 36-138 153-253 (338)
414 TIGR01757 Malate-DH_plant mala 92.6 0.42 9.1E-06 44.6 7.2 24 35-58 44-67 (387)
415 PF01370 Epimerase: NAD depend 92.6 0.18 3.8E-06 41.8 4.4 72 38-115 1-74 (236)
416 PLN00112 malate dehydrogenase 92.6 0.52 1.1E-05 44.8 7.9 24 35-58 100-123 (444)
417 PLN02686 cinnamoyl-CoA reducta 92.5 0.22 4.7E-06 45.5 5.1 36 33-69 51-86 (367)
418 TIGR01202 bchC 2-desacetyl-2-h 92.5 1.1 2.3E-05 39.6 9.4 86 37-138 147-233 (308)
419 PLN02928 oxidoreductase family 92.5 0.77 1.7E-05 42.0 8.7 69 34-114 158-234 (347)
420 PRK02006 murD UDP-N-acetylmura 92.4 7.2 0.00016 37.1 15.5 31 36-69 8-38 (498)
421 TIGR01763 MalateDH_bact malate 92.4 1.3 2.9E-05 39.7 10.0 68 36-113 2-76 (305)
422 PRK06953 short chain dehydroge 92.4 0.89 1.9E-05 37.7 8.4 32 35-67 1-32 (222)
423 COG2423 Predicted ornithine cy 92.4 0.25 5.4E-06 45.2 5.3 90 37-136 132-225 (330)
424 PRK06988 putative formyltransf 92.4 0.36 7.8E-06 43.5 6.3 72 34-114 1-85 (312)
425 PRK08410 2-hydroxyacid dehydro 92.3 1.1 2.5E-05 40.3 9.5 61 34-114 144-204 (311)
426 KOG2017 Molybdopterin synthase 92.3 0.29 6.2E-06 45.3 5.6 95 36-138 67-189 (427)
427 PF02844 GARS_N: Phosphoribosy 92.3 1.6 3.6E-05 33.1 8.9 31 36-67 1-31 (100)
428 KOG0069 Glyoxylate/hydroxypyru 92.3 1.3 2.8E-05 40.7 9.8 84 36-135 163-249 (336)
429 PRK00066 ldh L-lactate dehydro 92.2 0.45 9.7E-06 43.0 6.7 33 36-69 7-39 (315)
430 PLN02602 lactate dehydrogenase 92.2 0.45 9.6E-06 43.8 6.7 33 36-69 38-70 (350)
431 PRK09009 C factor cell-cell si 92.2 0.4 8.7E-06 40.0 6.0 30 36-65 1-31 (235)
432 COG0702 Predicted nucleoside-d 92.1 0.24 5.2E-06 42.0 4.7 33 36-69 1-33 (275)
433 TIGR02825 B4_12hDH leukotriene 92.1 1.8 3.9E-05 38.1 10.4 96 36-138 140-239 (325)
434 PRK07023 short chain dehydroge 92.1 0.26 5.5E-06 41.5 4.8 32 35-67 1-32 (243)
435 PRK08017 oxidoreductase; Provi 92.0 3.4 7.4E-05 34.6 11.6 30 37-67 4-33 (256)
436 PRK05565 fabG 3-ketoacyl-(acyl 91.9 0.83 1.8E-05 38.0 7.7 34 35-69 5-38 (247)
437 TIGR01381 E1_like_apg7 E1-like 91.9 0.78 1.7E-05 45.6 8.4 98 35-140 338-483 (664)
438 PRK15076 alpha-galactosidase; 91.9 1.6 3.4E-05 41.3 10.2 149 35-205 1-177 (431)
439 PRK06395 phosphoribosylamine-- 91.9 1.3 2.9E-05 41.7 9.7 92 34-134 1-93 (435)
440 cd05297 GH4_alpha_glucosidase_ 91.8 0.3 6.6E-06 45.8 5.3 91 36-134 1-105 (423)
441 PRK03562 glutathione-regulated 91.8 2.5 5.5E-05 41.7 11.9 118 35-169 400-524 (621)
442 PF02254 TrkA_N: TrkA-N domain 91.8 1.2 2.5E-05 33.3 7.6 109 38-163 1-116 (116)
443 TIGR00518 alaDH alanine dehydr 91.7 0.45 9.8E-06 43.9 6.3 42 26-70 158-199 (370)
444 PRK02705 murD UDP-N-acetylmura 91.7 5.6 0.00012 37.1 13.7 30 37-69 2-31 (459)
445 PLN02253 xanthoxin dehydrogena 91.7 1.3 2.9E-05 37.9 8.9 30 36-66 19-48 (280)
446 PRK06841 short chain dehydroge 91.6 1.2 2.6E-05 37.5 8.4 32 35-67 15-46 (255)
447 PRK12749 quinate/shikimate deh 91.6 1.5 3.3E-05 39.1 9.3 131 36-179 125-267 (288)
448 PF13941 MutL: MutL protein 91.5 3.4 7.4E-05 39.5 12.1 121 19-167 62-189 (457)
449 COG0039 Mdh Malate/lactate deh 91.5 1.3 2.9E-05 40.2 9.0 32 36-69 1-33 (313)
450 PRK14027 quinate/shikimate deh 91.5 0.85 1.8E-05 40.6 7.6 126 36-179 128-263 (283)
451 PRK07578 short chain dehydroge 91.5 1.3 2.8E-05 36.1 8.3 30 36-67 1-30 (199)
452 TIGR03366 HpnZ_proposed putati 91.5 1.1 2.5E-05 38.8 8.3 93 37-138 123-220 (280)
453 PRK05866 short chain dehydroge 91.4 1.2 2.6E-05 39.1 8.5 31 36-67 41-71 (293)
454 KOG2250 Glutamate/leucine/phen 91.4 2.7 5.9E-05 40.4 11.1 122 32-166 248-390 (514)
455 cd08293 PTGR2 Prostaglandin re 91.4 0.72 1.6E-05 40.7 7.1 97 36-137 156-255 (345)
456 PRK07589 ornithine cyclodeamin 91.4 0.5 1.1E-05 43.4 6.1 93 36-137 130-226 (346)
457 TIGR02437 FadB fatty oxidation 91.4 1.4 3E-05 44.3 9.7 33 34-69 312-344 (714)
458 COG0677 WecC UDP-N-acetyl-D-ma 91.4 1.9 4.2E-05 40.6 9.9 103 36-151 10-145 (436)
459 cd01493 APPBP1_RUB Ubiquitin a 91.3 1.8 3.9E-05 40.9 9.9 120 36-164 21-145 (425)
460 PRK07877 hypothetical protein; 91.3 1.6 3.5E-05 43.9 10.1 95 35-138 107-229 (722)
461 PRK00683 murD UDP-N-acetylmura 91.3 1.2 2.6E-05 41.3 8.7 136 36-194 4-158 (418)
462 TIGR00877 purD phosphoribosyla 91.3 1.4 3E-05 40.8 9.1 91 36-134 1-92 (423)
463 TIGR01319 glmL_fam conserved h 91.2 3.8 8.3E-05 39.2 12.0 119 23-169 62-187 (463)
464 PRK01368 murD UDP-N-acetylmura 91.2 5.3 0.00011 37.8 13.0 30 36-69 7-36 (454)
465 KOG1014 17 beta-hydroxysteroid 91.0 0.57 1.2E-05 42.5 6.0 82 38-139 52-135 (312)
466 PRK00421 murC UDP-N-acetylmura 91.0 1 2.3E-05 42.3 8.1 84 35-134 7-94 (461)
467 TIGR01724 hmd_rel H2-forming N 91.0 3.5 7.5E-05 37.9 11.0 87 48-147 32-125 (341)
468 KOG4777 Aspartate-semialdehyde 90.9 0.73 1.6E-05 41.2 6.4 131 37-170 5-157 (361)
469 PRK01438 murD UDP-N-acetylmura 90.9 0.57 1.2E-05 44.1 6.2 31 36-69 17-47 (480)
470 PRK01390 murD UDP-N-acetylmura 90.8 1.2 2.6E-05 41.7 8.3 31 36-69 10-40 (460)
471 PRK12557 H(2)-dependent methyl 90.8 2.7 5.8E-05 38.5 10.3 91 48-151 32-130 (342)
472 cd01080 NAD_bind_m-THF_DH_Cycl 90.8 0.97 2.1E-05 37.3 6.8 34 33-69 42-76 (168)
473 PRK08219 short chain dehydroge 90.8 0.41 8.8E-06 39.4 4.6 31 35-67 3-33 (227)
474 PLN03154 putative allyl alcoho 90.8 1.7 3.7E-05 39.1 9.0 97 36-138 160-260 (348)
475 PRK12938 acetyacetyl-CoA reduc 90.7 3.8 8.2E-05 34.2 10.6 31 37-68 5-35 (246)
476 cd08230 glucose_DH Glucose deh 90.7 1.2 2.5E-05 40.0 7.8 93 36-138 174-271 (355)
477 PRK09186 flagellin modificatio 90.6 1.7 3.8E-05 36.4 8.4 31 36-67 5-35 (256)
478 COG1893 ApbA Ketopantoate redu 90.6 2.2 4.7E-05 38.5 9.4 107 36-154 1-116 (307)
479 KOG2774 NAD dependent epimeras 90.6 2.2 4.8E-05 37.9 9.0 103 4-114 13-118 (366)
480 PF02423 OCD_Mu_crystall: Orni 90.6 0.46 9.9E-06 42.8 5.0 93 36-137 129-225 (313)
481 TIGR01758 MDH_euk_cyt malate d 90.5 1.5 3.3E-05 39.8 8.4 21 37-57 1-21 (324)
482 cd08292 ETR_like_2 2-enoyl thi 90.4 1.1 2.4E-05 39.0 7.2 98 36-138 141-240 (324)
483 PLN02306 hydroxypyruvate reduc 90.4 2.6 5.7E-05 39.3 10.0 71 35-114 165-244 (386)
484 TIGR01470 cysG_Nterm siroheme 90.3 2.3 5E-05 36.0 8.8 85 36-133 10-97 (205)
485 KOG1430 C-3 sterol dehydrogena 90.3 3.4 7.4E-05 38.3 10.5 37 33-69 2-38 (361)
486 cd08294 leukotriene_B4_DH_like 90.3 1.8 3.9E-05 37.8 8.5 96 37-138 146-243 (329)
487 PRK05872 short chain dehydroge 90.2 2.4 5.1E-05 37.1 9.2 30 36-66 10-39 (296)
488 PLN02948 phosphoribosylaminoim 90.2 4.3 9.3E-05 39.8 11.8 128 33-171 20-175 (577)
489 PRK09880 L-idonate 5-dehydroge 90.2 1.9 4E-05 38.5 8.6 90 37-138 172-268 (343)
490 cd00762 NAD_bind_malic_enz NAD 90.2 0.26 5.6E-06 43.5 3.0 91 36-136 26-139 (254)
491 PRK08628 short chain dehydroge 90.2 1.4 3.1E-05 37.1 7.6 31 36-67 8-38 (258)
492 PRK12827 short chain dehydroge 90.1 2.5 5.4E-05 35.1 8.8 31 36-67 7-37 (249)
493 PRK06057 short chain dehydroge 90.0 1.9 4.2E-05 36.4 8.2 30 36-66 8-37 (255)
494 PRK06196 oxidoreductase; Provi 90.0 1.6 3.5E-05 38.5 8.0 31 36-67 27-57 (315)
495 PRK07814 short chain dehydroge 89.9 1.8 3.9E-05 36.9 8.0 31 36-67 11-41 (263)
496 PRK12825 fabG 3-ketoacyl-(acyl 89.9 0.64 1.4E-05 38.5 5.1 34 35-69 6-39 (249)
497 PLN02740 Alcohol dehydrogenase 89.9 1.6 3.5E-05 39.7 8.1 93 37-139 201-303 (381)
498 TIGR02441 fa_ox_alpha_mit fatt 89.9 1.2 2.6E-05 44.9 7.8 33 34-69 334-366 (737)
499 PF02558 ApbA: Ketopantoate re 89.9 1.7 3.6E-05 34.0 7.2 30 38-69 1-30 (151)
500 PRK12742 oxidoreductase; Provi 89.9 2.2 4.9E-05 35.3 8.4 31 36-67 7-37 (237)
No 1
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-51 Score=355.77 Aligned_cols=166 Identities=30% Similarity=0.395 Sum_probs=154.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
+||||+|+||+||||+.+++++.+.|+++|++++++ ...|.|+++++|.+ ..++++++|+..... ++||+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~~------~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVKA------DADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhccc------CCCEE
Confidence 479999999999999999999999999999999996 35689999999886 889999999776654 89999
Q ss_pred EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC--CCCeEE
Q 027650 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEI 188 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~--~~diEI 188 (220)
||||+|+.++++++.|+++|+++|||||||++++.++|++++++ +|+++|||||+|+||++++++.++++ +|||||
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI 151 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI 151 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 99999999999999999999999999999999999999999999 99999999999999999988777765 469999
Q ss_pred EeccCCCCCCCCchhhHHHH
Q 027650 189 VESRPNARMQLKSPTTSPTL 208 (220)
Q Consensus 189 iE~HH~~K~DaPSGTA~~~~ 208 (220)
+|+|||+|+|||||||+.+.
T Consensus 152 iE~HHr~K~DAPSGTAl~la 171 (266)
T COG0289 152 IEAHHRHKKDAPSGTALKLA 171 (266)
T ss_pred hhhhcccCCCCCcHHHHHHH
Confidence 99999999999999999743
No 2
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=1.6e-45 Score=323.40 Aligned_cols=170 Identities=29% Similarity=0.400 Sum_probs=151.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
||||+|+||+|+||+.+++.+.+.|+++|++++|+. ..+++++++.+.. ..++++++|++++ . .++||||
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI 73 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI 73 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence 589999998899999999999999999999999942 2467788877653 4678999999998 4 3799999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC--CCCeEEE
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIV 189 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~--~~diEIi 189 (220)
|||+|+.+.++++.|+++|+|+|+||||+++++.++|.++|+++|++++++||||+|+|+|.++++.+++. .||+||+
T Consensus 74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~ 153 (266)
T TIGR00036 74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII 153 (266)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence 99999999999999999999999999999999999999999999999999999999999998887666553 4799999
Q ss_pred eccCCCCCCCCchhhHHHHHHh
Q 027650 190 ESRPNARMQLKSPTTSPTLVRS 211 (220)
Q Consensus 190 E~HH~~K~DaPSGTA~~~~~~~ 211 (220)
|+|||+|+|+|||||+.+...-
T Consensus 154 E~HH~~K~DaPSGTA~~l~~~i 175 (266)
T TIGR00036 154 ELHHRHKKDAPSGTALKTAEMI 175 (266)
T ss_pred eeccCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999754443
No 3
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=5.4e-44 Score=315.11 Aligned_cols=172 Identities=22% Similarity=0.330 Sum_probs=147.6
Q ss_pred ccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCcccc--CCHHHHHhcccc
Q 027650 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQ 103 (220)
Q Consensus 27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~l~g~~~~~gv~v~--~dl~~~l~~~~~ 103 (220)
+..+|+++.+||+|+||+||||+++++++.+ ++++||+++|+...|.+.+ ++.|. +++++ +|+++++....
T Consensus 3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~~~~~~dl~~~l~~~~- 76 (286)
T PLN02775 3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV----EVRLVGPSEREAVLSSVK- 76 (286)
T ss_pred CcCCCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceeccc----eeeeecCccHHHHHHHhh-
Confidence 3466777889999999999999999999999 9999999999866677777 66652 78888 99999996411
Q ss_pred CCCcc-EEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC
Q 027650 104 SKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 182 (220)
Q Consensus 104 ~~~~D-VVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~ 182 (220)
...+| |+||||.|+.+++++++|+++|+|+|+|||||+++|.+++ ++++++|++++||||+|+|||+++++.++++
T Consensus 77 ~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~---~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~ 153 (286)
T PLN02775 77 AEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKD---VEESGVYAVIAPQMGKQVVAFQAAMEIMAEQ 153 (286)
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HhcCCccEEEECcccHHHHHHHHHHHHHHHh
Confidence 12699 9999999999999999999999999999999999876544 4456799999999999999998887766543
Q ss_pred ------CCCeEEEeccCCCCCCCCchhhHHHH
Q 027650 183 ------YKNVEIVESRPNARMQLKSPTTSPTL 208 (220)
Q Consensus 183 ------~~diEIiE~HH~~K~DaPSGTA~~~~ 208 (220)
.||+||+|+||++|+|+ ||||+.+.
T Consensus 154 l~~~f~~yDiEIiE~HH~~K~Da-SGTA~~la 184 (286)
T PLN02775 154 FPGAFSGYTLEVVESHQATKLDT-SGTAKAVI 184 (286)
T ss_pred cccccCCCCEEEEECCCCCCCCC-cHHHHHHH
Confidence 37899999999999999 99999543
No 4
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=2e-42 Score=303.95 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=143.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCccc------cCCHHHHHhccccCCCcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA 108 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~l~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D 108 (220)
+||+|+||+|+||+++++++.+ ++++||++ +|+...|.|.+++.|. ++++ +.+++++++ ..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence 5899999999999999999988 89999998 8877678888888763 7888 899999986 3599
Q ss_pred -EEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC----
Q 027650 109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY---- 183 (220)
Q Consensus 109 -VVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~---- 183 (220)
|+||||+|+.++++++.|+++|+|+|+|||||++++.++|.+. .++|++++||||+|++||+++++.+++++
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f 147 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF 147 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999988888554 35999999999999999988887666544
Q ss_pred --CCeEEEeccCCCCCCCCchhhHHHHHHhh
Q 027650 184 --KNVEIVESRPNARMQLKSPTTSPTLVRST 212 (220)
Q Consensus 184 --~diEIiE~HH~~K~DaPSGTA~~~~~~~~ 212 (220)
||+||+|+||++|+|+ ||||+ .|.+..
T Consensus 148 ~~ydvEIiE~HH~~K~Da-SGTA~-~l~~~i 176 (275)
T TIGR02130 148 AGYKLEVMESHQASKADA-SGTAK-AVIGCF 176 (275)
T ss_pred CCCCEEEEEcCCCCCCCC-CHHHH-HHHHHH
Confidence 5999999999999999 99999 444444
No 5
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=1.5e-41 Score=296.79 Aligned_cols=162 Identities=27% Similarity=0.343 Sum_probs=140.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
||||+|+|++|+||+.+++.+.+.++++|++++|++... .... ...+++.++|+++++. ++|+|||||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence 589999999999999999999988999999999975311 1111 1457788999999985 799999999
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC--CCeEEEecc
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR 192 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~--~diEIiE~H 192 (220)
+|+.+.++++.|+++|+|+|+||||+++++.++|.++++ +++++++||||+|++++.++++.+++.+ ||+||+|+|
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~--~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H 146 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAK--KIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH 146 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--CCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 999999999999999999999999999999999999664 4999999999999999888876666543 699999999
Q ss_pred CCCCCCCCchhhHHHHHH
Q 027650 193 PNARMQLKSPTTSPTLVR 210 (220)
Q Consensus 193 H~~K~DaPSGTA~~~~~~ 210 (220)
||+|+|+|||||+.++..
T Consensus 147 H~~K~DaPSGTA~~l~~~ 164 (257)
T PRK00048 147 HRHKVDAPSGTALKLAEA 164 (257)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 999999999999965443
No 6
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=100.00 E-value=3e-32 Score=214.06 Aligned_cols=121 Identities=36% Similarity=0.603 Sum_probs=109.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|||+|+|++||||+.+++.+.++++++|++++++. ..|+|++++.|.. +.++++++|++++++ .+||+||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence 79999999999999999999999999999999964 4799999999987 889999999999997 5999999
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf 165 (220)
||.|+...++++.|+++|+|+|+|||||+++|.++|++++++ +|++++|||
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf 124 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF 124 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence 999999999999999999999999999999999999999999 999999998
No 7
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.75 E-value=2.4e-17 Score=126.42 Aligned_cols=116 Identities=27% Similarity=0.338 Sum_probs=101.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|||+|+|+ |++|+.+.+.+... +++++++++|++. .....+. +.++++.|+|++++++. .++|+|+.+|
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence 69999997 99999999988877 9999999999742 2233332 25678899999999985 5899999999
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEE
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI 161 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vvi 161 (220)
++..+.+.+..++++|+|+++++| +.+.++.++|.++++++|+.+.+
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999 78999999999999999988765
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.73 E-value=6.4e-17 Score=142.09 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=103.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
||||+|+|+ |+||+.+++.+...++++|+++++++..........+ .++++++|++++ . .++|+||++|
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-----~~~DvVve~t 69 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALG----EAVRVVSSVDAL-P-----QRPDLVVECA 69 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhc----cCCeeeCCHHHh-c-----cCCCEEEECC
Confidence 689999998 9999999999999999999999976422222222221 257889999988 5 4899999999
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCCC-CC-HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTtG-~~-~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~ 173 (220)
++..+.+++..++++|+|+|+++|+ ++ ++..++|.++|+++|..+++.|.+--|..+++
T Consensus 70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 9999999999999999999999997 55 55568899999999999999666555544444
No 9
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.69 E-value=9.3e-16 Score=136.63 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=121.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVI 111 (220)
+++||||+|+.|.+++.++..+.+.++ +++++++|++. ..+..+. +.++++ .|+|++++++. .++|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V~ 72 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAVY 72 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence 579999999844666779999998888 79999999753 2233333 256664 89999999985 4689999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI 188 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI 188 (220)
..|++..+.+.+..|+++|+||+|++| +.+.+|.++|.++|+++|+.+.+.-| |...+.-++++.. .+..-++..
T Consensus 73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~--~g~lG~v~~ 150 (342)
T COG0673 73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELID--SGALGEVVS 150 (342)
T ss_pred EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHh--cCCcCceEE
Confidence 999999999999999999999999999 89999999999999999999998766 7777766666653 224557777
Q ss_pred EeccCCCCC
Q 027650 189 VESRPNARM 197 (220)
Q Consensus 189 iE~HH~~K~ 197 (220)
++.+.....
T Consensus 151 ~~~~~~~~~ 159 (342)
T COG0673 151 VQASFSRDR 159 (342)
T ss_pred EEEEeeccc
Confidence 776655543
No 10
>PRK11579 putative oxidoreductase; Provisional
Probab=99.68 E-value=1.9e-15 Score=136.64 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=117.4
Q ss_pred CCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
.++||||+|+ |+||+ .+++.+...++++|++++|++. ..+.+ .-.++++|+|++++++. .++|+|+.
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~~----~~vD~V~I 70 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFND----PNIDLIVI 70 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhcC----CCCCEEEE
Confidence 4689999997 99998 5788888889999999999752 11211 01245679999999974 57999999
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV 189 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi 189 (220)
+|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.+..| |.....-++++.+ .+...++..+
T Consensus 71 ~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~--~g~iG~i~~~ 148 (346)
T PRK11579 71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLA--EGVLGEVAYF 148 (346)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHh--cCCCCCeEEE
Confidence 99999999999999999999999999 78999999999999999999887655 7888877777763 2345566666
Q ss_pred ecc
Q 027650 190 ESR 192 (220)
Q Consensus 190 E~H 192 (220)
+.|
T Consensus 149 ~~~ 151 (346)
T PRK11579 149 ESH 151 (346)
T ss_pred EEE
Confidence 665
No 11
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.60 E-value=1.4e-14 Score=127.27 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=103.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
||||+|+|+ |+||+.+++.+.+.+ ++++++++|++. ..+.++.. ..+++.++|+++++. ++|+|+++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a~---~~~~~~~~~~~ell~------~~DvVvi~ 68 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLAS---KTGAKACLSIDELVE------DVDLVVEC 68 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHHH---hcCCeeECCHHHHhc------CCCEEEEc
Confidence 689999997 999999999988764 899999999752 22333332 346778999999984 79999999
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCCCC--CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTtG~--~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
++|+.+.+++..++++|+++++.++|. +++..++|.++|+++|+.+++.+.+-.|...+
T Consensus 69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i 129 (265)
T PRK13304 69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGI 129 (265)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHH
Confidence 999999999999999999999998863 78888999999999999999966555555444
No 12
>PRK10206 putative oxidoreductase; Provisional
Probab=99.60 E-value=2.6e-14 Score=129.59 Aligned_cols=145 Identities=20% Similarity=0.138 Sum_probs=113.7
Q ss_pred CceEEEEcCCCHHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG-~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
|+||||+|+ |+++ +.++..+.. .++++|++++|++.. ..+... .+ ++++|+|++++++. .++|+|+
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~---~~~~~~---~~~~~~~~~~~~ell~~----~~iD~V~ 69 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAK---PEEQAP---IYSHIHFTSDLDEVLND----PDVKLVV 69 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChh---HHHHHH---hcCCCcccCCHHHHhcC----CCCCEEE
Confidence 689999997 9976 457776654 478999999997521 112221 33 36789999999974 5899999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI 188 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI 188 (220)
.+|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.+..| |...+.-++++.+. +..-++-.
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~ 147 (344)
T PRK10206 70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE 147 (344)
T ss_pred EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence 999999999999999999999999999 78999999999999999999988776 77777667776632 23445555
Q ss_pred Eecc
Q 027650 189 VESR 192 (220)
Q Consensus 189 iE~H 192 (220)
++.+
T Consensus 148 i~~~ 151 (344)
T PRK10206 148 VESH 151 (344)
T ss_pred EEEE
Confidence 5554
No 13
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.55 E-value=9.2e-14 Score=122.57 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=101.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
++||+|+|+ |+||+.+++.+.. .++++|++++|++. ....++. ..+++ ..++++++++. ++|+|++
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE 73 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence 389999997 9999999999987 48999999999742 2222333 13343 56889999985 6999999
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
+++++.+.+++..++++|+++++.+++ ..++.++|.++++++|.++++.++|--|...+
T Consensus 74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~g-al~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l 132 (271)
T PRK13302 74 AAPASVLRAIVEPVLAAGKKAIVLSVG-ALLRNEDLIDLARQNGGQIIVPTGALLGLDAV 132 (271)
T ss_pred CCCcHHHHHHHHHHHHcCCcEEEecch-hHHhHHHHHHHHHHcCCEEEEcchHHHhHHHH
Confidence 999999999999999999999998765 22466899999999999999988877776443
No 14
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.51 E-value=2.9e-13 Score=123.22 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=103.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
.++||+|+|+ +||+.+++.+.+.+ +++|+|++|++. +.+.+++ +.+|++.|+|+++++++ .++|+|..
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~i 70 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVV 70 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEe
Confidence 5689999997 68999999999888 899999999742 2333444 35788899999999962 23444443
Q ss_pred cc--CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650 113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177 (220)
Q Consensus 113 fT--~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~ 177 (220)
-| ++..+.+.++.|+++|+||+|++|=. .+|.++|.++|+++|+.+.+ ..|...+..++++..
T Consensus 71 pt~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~ 135 (343)
T TIGR01761 71 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIE 135 (343)
T ss_pred CCCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHH
Confidence 22 35688999999999999999999943 68999999999999999887 568888877777653
No 15
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.50 E-value=4.1e-13 Score=121.22 Aligned_cols=155 Identities=13% Similarity=0.072 Sum_probs=112.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
++||+|+|+ |+||+.+++.+.+.|++||+|++|+...+ .++. ..++..+.|.++++. ++|||+.+|
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~~------~~~v~~~~d~~e~l~------~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLDT------ETPVYAVADDEKHLD------DVDVLILCM 68 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHhh------cCCccccCCHHHhcc------CCCEEEEcC
Confidence 589999997 99999999999999999999999975211 1111 233444556666653 799999888
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCCC-C-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH-HHHhcCCCCCe----E
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASFHYKNV----E 187 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTtG-~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~-a~~~~~~~~di----E 187 (220)
++..+.+.+..++++|+|+|...+- . .++..++|+++|+++|-..+++..|.+|..-+.++ ...+.+...+. .
T Consensus 69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~ 148 (324)
T TIGR01921 69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGP 148 (324)
T ss_pred CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCC
Confidence 8899999999999999999998762 2 36788999999998666666678888998755444 33343322111 2
Q ss_pred EEeccCCCCCCCCchh
Q 027650 188 IVESRPNARMQLKSPT 203 (220)
Q Consensus 188 IiE~HH~~K~DaPSGT 203 (220)
-+..+|..-.|.=.|-
T Consensus 149 g~s~ghs~a~~~~~Gv 164 (324)
T TIGR01921 149 GLSQGHSDAVRRIDGV 164 (324)
T ss_pred CcCchhhhhhcccCCc
Confidence 3555666555555554
No 16
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.48 E-value=5.4e-13 Score=121.18 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=113.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCC-cc------ccC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMS 92 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~g~l~g~~~~~g-v~------v~~ 92 (220)
+++||+|+|+ |.||+.+++.+.+.+ +++|++++|++ ..|.+.+++.......+ +. .+.
T Consensus 1 m~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 1 MEMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred CeEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 3589999997 999999999987664 79999999962 23444444332211222 11 234
Q ss_pred CHHHHHhccccCCCccEEEEccCchh-----HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650 93 DLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (220)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~ 167 (220)
|+++++.. .++|||||+|++.. ..++++.++++|+|||+++.+......++|.++|+++|+.+.+-....-
T Consensus 80 d~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~ 155 (341)
T PRK06270 80 SGLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG 155 (341)
T ss_pred CHHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence 88998864 57999999997644 3789999999999999987665555678899999999999998766666
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650 168 GSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR 210 (220)
Q Consensus 168 Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~ 210 (220)
|.-++..+-..+. ...|.=+|- .-|||..-.|-|
T Consensus 156 glPii~~l~~~l~--g~~I~~I~G-------IlnGT~nyIl~~ 189 (341)
T PRK06270 156 AMPIINLAKETLA--GNDIKSIKG-------ILNGTTNYILTR 189 (341)
T ss_pred chhHHHHHHhhcc--cCceEEEEE-------EEeCcHHHHHHH
Confidence 6666655543333 234544443 346666644443
No 17
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.48 E-value=4.4e-13 Score=121.64 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=120.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC-cccc--------
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM-------- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~g~l~g~~~~~g-v~v~-------- 91 (220)
++||+|.|+ |.+|+.+++.+.+. -+++|+++.|+. ..|-+..++.......+ +..+
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 589999997 99999999988763 248999999853 23444444332111111 0111
Q ss_pred CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (220)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l 171 (220)
.++++++.. .++|||||||.++.+.++...++++|+|||++++|.-....++|.++|+++++++++++|++.|+-+
T Consensus 81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 167788753 4799999999999999999999999999999999743355678999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHhhhHHhh
Q 027650 172 LQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEKIF 217 (220)
Q Consensus 172 l~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~~~~~~~ 217 (220)
+.-+-..++ ..+|.=+|- ..|||..-.|-+-.+...|
T Consensus 157 i~~l~~~l~--g~~i~~i~G-------IlnGT~nyIl~~m~~g~~f 193 (336)
T PRK08374 157 IGLLRENLL--GDTVKRIEA-------VVNATTTFILTRMEQGKTF 193 (336)
T ss_pred hHHHHhhcc--ccceEEEEE-------EEechHHHHHHHhhCCCCH
Confidence 765544443 345655554 4677777655544333333
No 18
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=99.43 E-value=1.2e-13 Score=110.05 Aligned_cols=45 Identities=24% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCC---CCCeEEEeccCCCCCCCCchhhHHHHHHhh
Q 027650 168 GSILLQQAAISASFH---YKNVEIVESRPNARMQLKSPTTSPTLVRST 212 (220)
Q Consensus 168 Gv~ll~~~a~~~~~~---~~diEIiE~HH~~K~DaPSGTA~~~~~~~~ 212 (220)
|+|||+++++.+++. .||+||+|+||++|+|+|||||+.++..-.
T Consensus 1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~ 48 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIA 48 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHH
Confidence 889988877666543 478999999999999999999996444333
No 19
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=6.7e-12 Score=113.24 Aligned_cols=154 Identities=15% Similarity=0.044 Sum_probs=125.6
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCC---CccccCCHHHHHhccccCCC
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVLGSISQSKA 106 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~---gv~v~~dl~~~l~~~~~~~~ 106 (220)
++..+|+||.|| |+|++..++++...| +++++++.|+. ...+-+++- +. +..+|.++|+++.+ ..
T Consensus 3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s--~~~A~~fAq---~~~~~~~k~y~syEeLakd----~~ 72 (351)
T KOG2741|consen 3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPS--LERAKEFAQ---RHNIPNPKAYGSYEELAKD----PE 72 (351)
T ss_pred CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEeccc--HHHHHHHHH---hcCCCCCccccCHHHHhcC----CC
Confidence 455689999998 999999999999888 99999999983 234444442 23 44679999999975 67
Q ss_pred ccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEE--cCCCcHHHHHHHHHHHHhcCCC
Q 027650 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI--APTLSIGSILLQQAAISASFHY 183 (220)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vvi--apNfS~Gv~ll~~~a~~~~~~~ 183 (220)
+|||..-++...+++.+..++++||||+|++| ..+.+|.++|-++|+++|+-+.. -..|++-+.-++.+.. .+.+
T Consensus 73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~ 150 (351)
T KOG2741|consen 73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL 150 (351)
T ss_pred cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence 89988666777889999999999999999999 89999999999999999977763 3778888877887774 5567
Q ss_pred CCeEEEeccCCCCC
Q 027650 184 KNVEIVESRPNARM 197 (220)
Q Consensus 184 ~diEIiE~HH~~K~ 197 (220)
-|+.-++.-|+.-.
T Consensus 151 Gdvk~v~~~~~f~~ 164 (351)
T KOG2741|consen 151 GDVKSVEVEFGFPF 164 (351)
T ss_pred ccceEEEEecCCCc
Confidence 78888888776644
No 20
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.39 E-value=9.6e-12 Score=109.37 Aligned_cols=126 Identities=10% Similarity=0.131 Sum_probs=101.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
.+||+|+|| |.||+.+++.+... ++++|+++.++.. .....+.+ .+++++|+++++. .++|+||+
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVVE 68 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVVE 68 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEEE
Confidence 579999998 99999999998753 4599999988742 12223332 2678999999876 38999999
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCCC-C-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTtG-~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~ 173 (220)
+..++++.++...+|++|+++++..+| | +++..++|.++|+++|..+++.++---|.-.+.
T Consensus 69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~ 131 (267)
T PRK13301 69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQ 131 (267)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHH
Confidence 999999999999999999999999986 3 677888999999999999999666333443344
No 21
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.39 E-value=1.4e-11 Score=125.17 Aligned_cols=137 Identities=20% Similarity=0.116 Sum_probs=106.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcC-CCCCCccc-cCCHHHHHhc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDM-EQPLEIPV-MSDLTMVLGS 100 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~g~l~g~-~~~~gv~v-~~dl~~~l~~ 100 (220)
|.||+|+|| |+||+.+++.+...++.+ +|.++|+.. .++.++... .....+.+ +.|.+++.+.
T Consensus 569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 669999998 999999999999988877 788888642 223333210 00011444 6787777652
Q ss_pred cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH--HHHHHHH
Q 027650 101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQAAIS 178 (220)
Q Consensus 101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l--l~~~a~~ 178 (220)
+ .++|+||.++++..+.+.++.|+++|+|+|+.+ ++.++..+|.+.|+++|+.++..-+|..|+.- .+++...
T Consensus 646 v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~ 720 (1042)
T PLN02819 646 V---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDD 720 (1042)
T ss_pred h---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHh
Confidence 1 269999999999999999999999999999877 88889999999999999999999999999964 4555544
Q ss_pred h
Q 027650 179 A 179 (220)
Q Consensus 179 ~ 179 (220)
.
T Consensus 721 ~ 721 (1042)
T PLN02819 721 A 721 (1042)
T ss_pred h
Confidence 4
No 22
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.38 E-value=4.5e-12 Score=118.35 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=115.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (220)
++||+|+|+ |.+|+.+++.+.+++ +++|+++++++.. + ... . ...+..+++|+++++.. .
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~-~~~-~---~~~~~~~~~d~~~ll~d----~ 71 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-K-DRG-V---DLPGILLTTDPEELVND----P 71 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-h-ccC-C---CCcccceeCCHHHHhhC----C
Confidence 589999997 999999999886653 7899999997421 1 111 1 12245678999999974 5
Q ss_pred CccEEEEccCc-hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCC
Q 027650 106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYK 184 (220)
Q Consensus 106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~ 184 (220)
++|+||+.|.+ +.+.++++.|+++|+|||+..+++..++.++|.++|+++|+.+.+.+...-|+-++..+-..+.. .
T Consensus 72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l~~--~ 149 (426)
T PRK06349 72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGLAA--N 149 (426)
T ss_pred CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhccc--C
Confidence 79999999854 66789999999999999998778888899999999999999999887777666666555444432 2
Q ss_pred CeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650 185 NVEIVESRPNARMQLKSPTTSPTLVRS 211 (220)
Q Consensus 185 diEIiE~HH~~K~DaPSGTA~~~~~~~ 211 (220)
.|.=++ -.-+||.+-.|-+-
T Consensus 150 ~I~~I~-------GIlnGT~nyIl~~m 169 (426)
T PRK06349 150 RITRVM-------GIVNGTTNYILTKM 169 (426)
T ss_pred CeeEEE-------EEEeCcHHHHHhhh
Confidence 333232 24577777655444
No 23
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=99.33 E-value=1.4e-11 Score=108.65 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=112.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE-
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI- 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI- 111 (220)
.|+|.++| +|..|...+|.+.++|+++|||++++ .+.|+|++++.|+. .+||...++++..++. .+|.++
T Consensus 2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlAt-----l~~~~~y 74 (350)
T COG3804 2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLAT-----LADAVIY 74 (350)
T ss_pred CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeecccccceec-----cccceee
Confidence 47999999 69999999999999999999999996 56799999999997 4899999999999873 566555
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCC------CCCHHHHHHHHHHhhhcCce-EE---EcCCCcHHHHHHHHHHHHhcC
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMG-CL---IAPTLSIGSILLQQAAISASF 181 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTt------G~~~e~~~~L~~aA~~~~v~-vv---iapNfS~Gv~ll~~~a~~~~~ 181 (220)
+.-.| ..+..+.+|++|+|||+--+ +..+|..+++.+.|.++|.. +. |-|.|+.-. +.+ .++.
T Consensus 75 ~~~~~--~~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pGF~~dl-lpm----lLsg 147 (350)
T COG3804 75 APLLP--SVDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPGFVTDL-LPM----LLSG 147 (350)
T ss_pred ecccc--hHHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCccHHHHH-HHH----HHcc
Confidence 33344 38889999999999996422 34789999999999998884 44 446665544 112 1233
Q ss_pred CCCCeE---EEeccCCCCCCCC
Q 027650 182 HYKNVE---IVESRPNARMQLK 200 (220)
Q Consensus 182 ~~~diE---IiE~HH~~K~DaP 200 (220)
.+..+| -.|.-...+.|+|
T Consensus 148 pcteve~ir~~e~~d~~~y~e~ 169 (350)
T COG3804 148 PCTEVEFIRSEEFSDLRSYGEP 169 (350)
T ss_pred cccceEEEeeeehhhHhhcCCc
Confidence 333333 3455555566655
No 24
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.29 E-value=6.9e-12 Score=96.64 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=83.6
Q ss_pred cCCCHHHHHHHHHHHhcC---CcEEEEEEecC-CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCch
Q 027650 42 GAVKEIGRAAVIAVTKAR---GMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117 (220)
Q Consensus 42 Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~-~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~ 117 (220)
|+ |.||+.+++.+.+.+ +++|+++++++ ....+.... ..+...+.+++++++. .++|+|||+|.++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~ 70 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSE 70 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCch
Confidence 65 999999999998876 89999999986 111111111 1234678899999974 4799999999999
Q ss_pred hHHHHHHHHHHCCCcEEEeCCCC--CHHHHHHHHHHhhhcCceEEE
Q 027650 118 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLI 161 (220)
Q Consensus 118 ~~~~~~~~al~~G~~vVigTtG~--~~e~~~~L~~aA~~~~v~vvi 161 (220)
...+++..++++|++||+...+. +....++|.++|+++|+.+++
T Consensus 71 ~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 71 AVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999876643 458889999999999998876
No 25
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.25 E-value=3.2e-11 Score=109.71 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=75.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------Ccchh-h---hhc-CCCCCCccccCCHHHHHhc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIG-M---VCD-MEQPLEIPVMSDLTMVLGS 100 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---------g~d~g-~---l~g-~~~~~gv~v~~dl~~~l~~ 100 (220)
|+||+|+|+ |+||+.+++++.++|++||+|++|+... |.+.. . ..+ . ...+++++.++++++.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence 689999998 9999999999999999999999985320 11100 0 000 1 0235777888888875
Q ss_pred cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650 101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (220)
Q Consensus 101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG 139 (220)
++|+|||||.+..+.+++..++++|+++|+-.+.
T Consensus 78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence 7999999999999999999999999999986653
No 26
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.25 E-value=1.5e-10 Score=99.32 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=98.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|+|+++|| |.+|+.+.+.+... -++|+++++|+.. +++.++.. ..+....+++++++. .+|++|++.
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA 68 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence 58999998 99999999999865 4699999999752 33333321 223344589999985 799999999
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCCC-C-CHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTtG-~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
.++++.+++..+|++|+++++-.+| | +++-.++++++|+..+..+++.++---|+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 9999999999999999999998886 4 57778889999999999999977644444
No 27
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.20 E-value=1.5e-10 Score=103.14 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=99.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
++||+|+|+ |+||+.++..+.+.+++++++++|++...... ... ..+|++. ++++++++.. .++|+|+++
T Consensus 1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l-a~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia 71 (285)
T TIGR03215 1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL-ARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA 71 (285)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH-HHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence 479999996 99999998888888999999999974311100 122 2467765 5689999874 579999999
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCCCCC----HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTtG~~----~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIi 189 (220)
|++..+.+++..++++|+++++.||.+. .-... +++..+..++.++.+||-+ .+-++.-+. .+.+.. .++|+
T Consensus 72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~~al~-r~~d~~-~~~iv 147 (285)
T TIGR03215 72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIVAAIS-RVAPVH-YAEIV 147 (285)
T ss_pred CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHHHHHH-Hhhccc-cEEEE
Confidence 9999999999999999999999999541 00111 3333344568888888855 333333333 232222 34665
Q ss_pred ec
Q 027650 190 ES 191 (220)
Q Consensus 190 E~ 191 (220)
-.
T Consensus 148 ~t 149 (285)
T TIGR03215 148 AS 149 (285)
T ss_pred EE
Confidence 54
No 28
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.14 E-value=6.6e-10 Score=99.59 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=100.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID 112 (220)
+++||+|+| +|++|+.++..+...++++|++++|.+... +.-... ..+|++. +++++++++.. ...++|+|+|
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es-~gla~A---~~~Gi~~~~~~ie~LL~~~-~~~dIDiVf~ 76 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPES-DGLARA---RRLGVATSAEGIDGLLAMP-EFDDIDIVFD 76 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHHH---HHcCCCcccCCHHHHHhCc-CCCCCCEEEE
Confidence 468999999 599999999888888999999999875311 111122 2467776 58999999610 0026899999
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCCCC---------CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 183 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTtG~---------~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~ 183 (220)
+|.+..+.+++..++++|+++|..||.+ +.++ .....++.++.+||=+.=- ++..+.+ .
T Consensus 77 AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~------~~~~~~~~iia~p~~ati~-----~v~Al~~-v 144 (302)
T PRK08300 77 ATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDE------HLDAPNVNMVTCGGQATIP-----IVAAVSR-V 144 (302)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHH------HhcccCCCEEECccHHHHH-----HHHHhcc-c
Confidence 9999999999999999999999999854 4432 2344568899988844322 2222333 3
Q ss_pred CCeEEEecc
Q 027650 184 KNVEIVESR 192 (220)
Q Consensus 184 ~diEIiE~H 192 (220)
.++++-|..
T Consensus 145 ~~~~~~eIv 153 (302)
T PRK08300 145 APVHYAEIV 153 (302)
T ss_pred CcCceeeee
Confidence 455666665
No 29
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=99.13 E-value=3.4e-10 Score=97.90 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=84.6
Q ss_pred CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650 60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (220)
Q Consensus 60 ~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG 139 (220)
+++|++++|++. ..+.++. +.+|+++++|+++++. .++|+|+.+|++..+.+++..++++|+|++|.++|
T Consensus 1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 478999999752 2233333 2457788999999986 37999999999999999999999999999999996
Q ss_pred -C-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 140 -~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
+ +.++.++|.++++++|.++++.++|--|...+
T Consensus 71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l 105 (229)
T TIGR03855 71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDAL 105 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHH
Confidence 5 67899999999999999999987655555444
No 30
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.08 E-value=1e-09 Score=85.26 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=72.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-CCCCccccC-CHHHHHhccccCCCccEEEEc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~l~g~~-~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (220)
||+|+|++|.+|+.+++++.++|+++++.++.+.. .|+.+....+.. ....+.+.+ +.+++ . ++|+|+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S------DVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T------TESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h------cCCEEEec
Confidence 79999999999999999999999999999999866 788887664310 011223333 33433 3 79999977
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTtG~ 140 (220)
++.....+....+++.|+.||--++.+
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 777778899999999999777544444
No 31
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.08 E-value=2e-09 Score=97.62 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=108.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCC--CCccccC--CHHHHHh
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG 99 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~g~l~g~~~~--~gv~v~~--dl~~~l~ 99 (220)
|||+|+|+ |.+|+.+++.+.+. .+++|+++.|+. ..|-|+.++...... +.....+ ++++++.
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 59999997 99999999998764 578999999963 234455444321111 1101112 6777775
Q ss_pred ccccCCCccEEEEccCch----hHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650 100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (220)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~----~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~ 175 (220)
.++||+||+|... ....+++.++++|+|||...-+.-....++|.++|+++|+.+.+..+..-|.-++.-+
T Consensus 80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 4899999998532 2467889999999999975545434667899999999999999998887777766644
Q ss_pred HHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650 176 AISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR 210 (220)
Q Consensus 176 a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~ 210 (220)
-..+. ..+|+=+|- .-|||..-.|-|
T Consensus 155 ~~~~~--g~~i~~i~G-------ilnGT~nyIl~~ 180 (326)
T PRK06392 155 DYSTL--PSRIKNFRG-------IVSSTINYVIRQ 180 (326)
T ss_pred hhhcc--cCCEEEEEE-------EEeChHHHHHhh
Confidence 21233 235555544 345555544433
No 32
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.98 E-value=3.1e-09 Score=96.70 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=74.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
+|+||+|+||+|.+|+.+++.+.++|+++|++++++...|+.+.+..+ .....+ ..++++++... .++|+|+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~-----~~vD~Vf~ 74 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVD-LVLEPLDPEIL-----AGADVVFL 74 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccC-ceeecCCHHHh-----cCCCEEEE
Confidence 478999999999999999999999999999999986545555443321 100001 13555555432 37999998
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVPHI 140 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTtG~ 140 (220)
+++...+.+.+..++++|++||--+..|
T Consensus 75 alP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 75 ALPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 8888888999999999999999655443
No 33
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.94 E-value=7.7e-09 Score=95.58 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=99.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc--CC-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD--ME-QPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g--~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
|+||.|+|| |++|+.++..++++.+.++..+..+...-.++.+..+ +. -..++.-.+.+.+++. +.|+||
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~VI 73 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLVI 73 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEEE
Confidence 689999998 9999999999998887888865443111112211110 00 0111222345666775 679999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH--HHHHHHHhcCCCCCeEEE
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQAAISASFHYKNVEIV 189 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l--l~~~a~~~~~~~~diEIi 189 (220)
.+-+|......+++|+++|+++|- |+ ..++...++++.|+++|+.++..-+|++|+.- ..++++.+-+...++.|.
T Consensus 74 n~~p~~~~~~i~ka~i~~gv~yvD-ts-~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~iy 151 (389)
T COG1748 74 NAAPPFVDLTILKACIKTGVDYVD-TS-YYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDIY 151 (389)
T ss_pred EeCCchhhHHHHHHHHHhCCCEEE-cc-cCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEEE
Confidence 999999999999999999999994 33 33333388999999999999999999999942 244444433222344444
Q ss_pred ec
Q 027650 190 ES 191 (220)
Q Consensus 190 E~ 191 (220)
--
T Consensus 152 ~g 153 (389)
T COG1748 152 VG 153 (389)
T ss_pred Ee
Confidence 33
No 34
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.84 E-value=6e-08 Score=88.65 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=107.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCC-----CCcchhhhhcCCC-CCCc--cccCCHHHH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV 97 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~-----~g~d~g~l~g~~~-~~gv--~v~~dl~~~ 97 (220)
+++|+|+|+ |.+|+.+++.+.+. -+++|+++++++. .|-+...++..+. .... ....+.++.
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 589999996 99999999998643 2578999998631 1323332221100 0000 012233333
Q ss_pred HhccccCCCccEEEEccCc-----hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
+.. ..+.|||||+|.. +....+++.++++|+|||..--+.-....++|.++|+++|+.+.+..+..=|+-++
T Consensus 81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI 157 (346)
T PRK06813 81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTL 157 (346)
T ss_pred hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchH
Confidence 321 0258999999865 45578889999999999965445445566889999999999999998888787777
Q ss_pred HHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650 173 QQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRS 211 (220)
Q Consensus 173 ~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~ 211 (220)
.-+-..++ ..+|+=+|- .-|||..-.|-+-
T Consensus 158 ~~l~~~~~--g~~I~~i~G-------IlNGT~NyIL~~m 187 (346)
T PRK06813 158 DIGQFSLA--GCHIEKIEG-------ILNGTTNYILTKM 187 (346)
T ss_pred HHHhhhcc--cCcEEEEEE-------EEechHHHHHhhh
Confidence 65522222 346665554 4577776555443
No 35
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.80 E-value=8e-08 Score=84.95 Aligned_cols=159 Identities=20% Similarity=0.250 Sum_probs=121.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
-||.|-|.+|++|..|.+...+. +..+|+.+.|.+.|.. -.++|+|++.+|++.+ .++|+-+.|-+
T Consensus 9 tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~Vp 74 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFVP 74 (293)
T ss_pred CeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEecC
Confidence 58999999999999999999887 9999999988654433 3468999999999985 68999888999
Q ss_pred chhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH-----HHHhcCCCCCeEEE
Q 027650 116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-----AISASFHYKNVEIV 189 (220)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~-----a~~~~~~~~diEIi 189 (220)
|....+-+..|+++|+.+|+--| |....+.-++.+.+++.++.+ +-|| ..|+..-.++ -..+-+. -+|=|+
T Consensus 75 ~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~i-iGPn-cpGiI~Pg~~kiGimp~~i~~~-G~IGiV 151 (293)
T COG0074 75 PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRL-IGPN-CPGIITPGECKIGIMPGNIYKP-GNIGIV 151 (293)
T ss_pred cHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEE-ECCC-CCccCcCCcceeeechhhhccC-CceEEE
Confidence 99999999999999988876655 888888899999999988544 4455 4444221111 1111111 245554
Q ss_pred eccCCCCCCCCchhhHHHHHHhhhHHhhhcC
Q 027650 190 ESRPNARMQLKSPTTSPTLVRSTTEKIFQQT 220 (220)
Q Consensus 190 E~HH~~K~DaPSGTA~~~~~~~~~~~~~~~~ 220 (220)
+-|||=...++.+.++.-|.|+
T Consensus 152 ---------SrSGTLTyE~~~qlt~~G~GqS 173 (293)
T COG0074 152 ---------SRSGTLTYEAVSQLTEAGLGQS 173 (293)
T ss_pred ---------ecCcchHHHHHHHHHhcCCceE
Confidence 4599998899999998888773
No 36
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.78 E-value=7.7e-08 Score=86.88 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
...||.|-|.||+-|+.|.+...+. +.++|+.+.|..-|+... ..|+|+|.+++++.+. .++|+.+.|
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI~ 95 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVIY 95 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEEe
Confidence 3469999999999999999988776 889999998865443321 1278999999999873 359999989
Q ss_pred cCchhHHHHHHHHHHCCCcEEEe-CCCCCHHHHHHHHHHhh-hcCceEEEcCCCcHHHHHH
Q 027650 114 TDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVig-TtG~~~e~~~~L~~aA~-~~~v~vviapNfS~Gv~ll 172 (220)
.+|..+.+.+..|.++|++.++- |.|+.+.+..+++++++ +.|+. ++=|| ++|+...
T Consensus 96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~r-liGPN-c~Gii~p 154 (317)
T PTZ00187 96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTR-LIGPN-CPGIIKP 154 (317)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCE-EECCC-CceEEcc
Confidence 99999999999999999998655 55898877777777765 35654 66688 7776433
No 37
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.76 E-value=4.2e-08 Score=89.17 Aligned_cols=124 Identities=20% Similarity=0.197 Sum_probs=87.9
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCC-----------------CCCCccccCC
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME-----------------QPLEIPVMSD 93 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~-----------------~~~gv~v~~d 93 (220)
....+||+++|+ |.||+-++..+...|+++++++.|+... .+++-+.+|.. +.-.+.+++|
T Consensus 14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D 92 (438)
T COG4091 14 EGKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDD 92 (438)
T ss_pred cCCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecc
Confidence 456799999997 9999999999999999999999985221 11111111110 1223566788
Q ss_pred HHHHHhccccCCCccEEEEcc-CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 027650 94 LTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (220)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia 162 (220)
.+.++.. ..+|||||.| .|+.-.++...++.+|+|+|.=.-..+----.-|++.|++ ..++++
T Consensus 93 ~~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS 156 (438)
T COG4091 93 AELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYS 156 (438)
T ss_pred hhhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEe
Confidence 8888875 5799999998 6888899999999999999964433322222346777777 555554
No 38
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.73 E-value=6.1e-08 Score=88.75 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=91.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCCccEE
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~DVV 110 (220)
|+|+|+ |+||+.+++.+.++++.+=+.+.|++. ..+..+...-....+.. ..++.+++. +.|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~------~~dvV 71 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLR------GCDVV 71 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT------TSSEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHh------cCCEE
Confidence 789999 999999999999988884444556531 12222221000011111 223555664 78999
Q ss_pred EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH-H-HHHHHHHhcCCCCCeEE
Q 027650 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-L-LQQAAISASFHYKNVEI 188 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~-l-l~~~a~~~~~~~~diEI 188 (220)
|++..|......++.|+++|+|.|- +.+-.++..++.+.++++|+.++..-.|..|.. + ...+++.+......++.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~~v~~ 149 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELDAEGDEVES 149 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTHEEEE
T ss_pred EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhhhhcccceE
Confidence 9999998888999999999999996 555456778899999999999999999999985 3 35555555422224444
Q ss_pred Ee
Q 027650 189 VE 190 (220)
Q Consensus 189 iE 190 (220)
+.
T Consensus 150 ~~ 151 (386)
T PF03435_consen 150 VD 151 (386)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 39
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.66 E-value=3.9e-07 Score=82.69 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=113.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCC-ccccCCH-----HHHH
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDL-----TMVL 98 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v~v~~dl-----~~~l 98 (220)
+++||+|+|. |.+|+.+++.+.+. -+++++++.+++. .....+- ..+ -...++. .+++
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDG--SLVRDLD----LLNAEVWTTDGALSLGDEVL 74 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccc--hhccccc----ccchhhheecccccccHhhh
Confidence 4689999996 99999999999864 4689999998742 1111000 111 1223444 4444
Q ss_pred hccccCCCccEEEEccCc--hhH--HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHH
Q 027650 99 GSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (220)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~ 174 (220)
.. .+.|+||+.+.. +.. .++++.++++|+|||..--++-.....+|.++|+++|+.+++-.+-.=|+-++.-
T Consensus 75 ~~----~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~ 150 (333)
T COG0460 75 LD----EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL 150 (333)
T ss_pred cc----ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHH
Confidence 42 588999987644 233 4889999999999995433555566899999999999999998887777766664
Q ss_pred HHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHhhhHH-hhhc
Q 027650 175 AAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEK-IFQQ 219 (220)
Q Consensus 175 ~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~~~~~-~~~~ 219 (220)
+-..++ ..+|+=++- --|||.+-+|-|-.++. .|.|
T Consensus 151 lr~~l~--g~~I~~i~G-------IlNGT~NyIlt~m~~~~~~f~d 187 (333)
T COG0460 151 LRELLA--GDEILSIRG-------ILNGTTNYILTRMEEGGLSFED 187 (333)
T ss_pred HHhhcc--cCceEEEEE-------EEeccHHHHHHHHHccCCCHHH
Confidence 444444 345543332 35899988887777776 6654
No 40
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.62 E-value=2.3e-07 Score=84.57 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=69.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCC-------CCCcccc-CCHHHHHhccccCC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQ-------PLEIPVM-SDLTMVLGSISQSK 105 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~l~g~~~-------~~gv~v~-~dl~~~l~~~~~~~ 105 (220)
|+||+|+|++|.+|+.+++.+..+|+++|+++ .++...|++...+.+... ..++.+. .+.+.+ .
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~------ 75 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D------ 75 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c------
Confidence 58999999999999999999999999999998 444456766654332100 0112221 244433 3
Q ss_pred CccEEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650 106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt 138 (220)
++|+|+++++.....+++..+.+.|+.+|.-+.
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence 799999777777778888888899999987554
No 41
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.61 E-value=8e-07 Score=69.00 Aligned_cols=110 Identities=20% Similarity=0.314 Sum_probs=77.1
Q ss_pred eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
+|+|+|++ ++.|..+.+.+.+ .++++..+ .+. + ++ -.|.+.|.++++ .. ..+|+++-|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~--~---~~------i~G~~~y~sl~e-~p-----~~iDlavv~ 62 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPK--G---GE------ILGIKCYPSLAE-IP-----EPIDLAVVC 62 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STT--C---SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCC--c---eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence 69999976 8899999999988 67888865 332 1 22 236788999998 43 389999989
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ 170 (220)
++|+...+.++.+.+.|+.-|+=.+| +..+++.++++++|++++= || ++|+.
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vig-p~-C~gv~ 114 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIG-PN-CLGVV 114 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEE-SS--HHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEe-CC-cceEE
Confidence 99999999999999999999988888 3346788899998888554 77 66663
No 42
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.61 E-value=3.2e-07 Score=83.66 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=68.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CCCCCCccccC--CHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~l~g-~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI 111 (220)
+||+|+||||.+|+.+++.+.++|+++|++++++. ..|+.+.+..+ +....+. .++ +.++++. ++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~~~~~~~~~~------~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDL-NLEPIDEEEIAE------DADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCc-eeecCCHHHhhc------CCCEEE
Confidence 58999999999999999999999999999887653 35665554332 1000011 122 4455543 699999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVPH 139 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTtG 139 (220)
-+++...+.+.+..++++|++||-=+..
T Consensus 74 ~alP~~~s~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 74 LALPHGVSAELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEeCChh
Confidence 5555556678888899999988864443
No 43
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.61 E-value=4e-07 Score=68.18 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
...||+|+|+ |++|+.++.......++++++++|.+. .+.++- -.|+|+|.+++++.+. .++|+.|.+
T Consensus 2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~~-----i~gipV~~~~~~l~~~----~~i~iaii~ 69 (96)
T PF02629_consen 2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGKE-----IGGIPVYGSMDELEEF----IEIDIAIIT 69 (96)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTSE-----ETTEEEESSHHHHHHH----CTTSEEEEE
T ss_pred CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCcE-----ECCEEeeccHHHhhhh----hCCCEEEEE
Confidence 3569999998 999999886666778999999999642 122221 2479999999999874 249998878
Q ss_pred cCchhHHHHHHHHHHCCCcEEEe
Q 027650 114 TDASTVYDNVKQATAFGMRSVVY 136 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVig 136 (220)
.+++.+.+.+..+++.|+..|+-
T Consensus 70 VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 70 VPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEE
Confidence 88888899999999999988754
No 44
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.59 E-value=3.1e-07 Score=83.46 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=67.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcC------CC-CCCccccCCHHHHHhccccCCCc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDM------EQ-PLEIPVMSDLTMVLGSISQSKAR 107 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~l~g~------~~-~~gv~v~~dl~~~l~~~~~~~~~ 107 (220)
+||+|+|++|+||+.+++.+.++|+++|++++++. ..|++..++... .. ..+.. +.++++... .++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLP-IVEPEPVAS-----KDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeE-EEeCCHHHh-----ccC
Confidence 58999999999999999999999999999998753 456666544321 00 01111 222222221 379
Q ss_pred cEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650 108 AVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (220)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al~~G~~vVig 136 (220)
|+|+.+++...+.++...+.++|+++|.=
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~~G~~VIDl 103 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAEAGKPVFSN 103 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHHCCCEEEEC
Confidence 99997777777889999999999998863
No 45
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.58 E-value=1.3e-06 Score=78.19 Aligned_cols=119 Identities=16% Similarity=0.269 Sum_probs=92.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
+-||.|+|.+|++|+.+.+.+.+. +++.+..+.|.. |. .+ -.|++.|.+++++-+. .++|++|.+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~~--~~------v~G~~~y~sv~dlp~~----~~~DlAvi~v 73 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFNTVAEAVEA----TGANASVIYV 73 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-CC--Ce------EeCeeccCCHHHHhhc----cCCCEEEEEc
Confidence 469999999999999999999875 444555565531 11 12 3478999999999751 0289988888
Q ss_pred CchhHHHHHHHHHHCCCcE-EEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~v-VigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
+++.+.+.++.|.+.|++. ||=|.||..++.++|.++|++.|++++= || ++|+
T Consensus 74 p~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG-PN-c~Gi 127 (291)
T PRK05678 74 PPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG-PN-CPGI 127 (291)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC-CC-CCcc
Confidence 9999999999999999776 5667799877667999999998887764 77 5666
No 46
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=98.57 E-value=1.5e-06 Score=77.67 Aligned_cols=119 Identities=16% Similarity=0.274 Sum_probs=93.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.-||.|.|.+|++|+.+.+.+... ++.+++.+.+.. +. .+ -.|++.|.+++++-+. .++|++|.+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~-~~--~~------v~G~~~y~sv~dlp~~----~~~Dlavi~v 71 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFDSVKEAVEE----TGANASVIFV 71 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC-Cc--ce------ecCeeccCCHHHHhhc----cCCCEEEEec
Confidence 458999999999999999988776 556888777642 11 12 3478999999998751 1389988888
Q ss_pred CchhHHHHHHHHHHCCCcEE-EeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV-igTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
+++.+.+.++.|.+.|++.+ |-|.||.+.+.++|.+.|++.|++++= || ++|+
T Consensus 72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG-PN-c~Gi 125 (286)
T TIGR01019 72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG-PN-CPGI 125 (286)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC-CC-CceE
Confidence 99999999999999997654 567799887678999999998887763 66 5555
No 47
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=98.54 E-value=5.8e-07 Score=83.17 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHH-HhccccCCCccEEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVI 111 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVVI 111 (220)
..++||+|+||||..|+++++.+.++|+++|+.+......|+.+.+....-.........+++.. +. +.|+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~DvVf 109 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS------DVDAVF 109 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc------CCCEEE
Confidence 46679999999999999999999999999999988754456554332100000112223333332 32 799999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTt 138 (220)
|+.|+.....+...++.|+.||-=+.
T Consensus 110 -~Alp~~~s~~i~~~~~~g~~VIDlSs 135 (381)
T PLN02968 110 -CCLPHGTTQEIIKALPKDLKIVDLSA 135 (381)
T ss_pred -EcCCHHHHHHHHHHHhCCCEEEEcCc
Confidence 77777665444444678877775444
No 48
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=3.3e-07 Score=82.85 Aligned_cols=103 Identities=24% Similarity=0.231 Sum_probs=71.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec------------CC-CCcchhhh------hcCCCCCCccccCCH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS------------HS-VGEDIGMV------CDMEQPLEIPVMSDL 94 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~------------~~-~g~d~g~l------~g~~~~~gv~v~~dl 94 (220)
|+||+|+|. ||+||.++|++.+.+ ++|+||+-|. +. .|.-.+++ .-. ...+++++...
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER 78 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence 689999997 999999999999988 7999999982 00 11111111 000 12356666555
Q ss_pred H-HHHhccccCCCccEEEEccCchhHHHHHHHHHHCC--CcEEEeCCCCC
Q 027650 95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHIQ 141 (220)
Q Consensus 95 ~-~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G--~~vVigTtG~~ 141 (220)
+ +.|.- ++.+.|+|||+|.--...++....+++| +.|+++-|+-+
T Consensus 79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~ 126 (335)
T COG0057 79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD 126 (335)
T ss_pred ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence 5 44432 1235789999998877888888888886 77888777543
No 49
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=98.52 E-value=1.9e-06 Score=77.46 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=93.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
-||.|.|-+|+-|..+.+...+. +..+++.+.+..-+. + -.|+++|.+++++-+. .++|++|.+.+
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~~---~------i~G~~~y~sv~dlp~~----~~~DlAvI~vP 78 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---E------HLGLPVFNTVAEAKAE----TKANASVIYVP 78 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCCc---e------EcCeeccCCHHHHhhc----cCCCEEEEecC
Confidence 59999999999999999988876 899999998743111 1 3478999999999862 13798888999
Q ss_pred chhHHHHHHHHHHCCCc-EEEeCCCCCHHH-HHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650 116 ASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI 170 (220)
Q Consensus 116 p~~~~~~~~~al~~G~~-vVigTtG~~~e~-~~~L~~aA~~~~v~vviapNfS~Gv~ 170 (220)
+..+.+.++.|.++|++ +||-|.||.+.. .+.+.++++++|++++ =|| ++|+.
T Consensus 79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi-GPN-c~Gii 133 (300)
T PLN00125 79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI-GPN-CPGII 133 (300)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE-CCC-Cceee
Confidence 99999999999999988 456677997653 3556667888777655 477 66663
No 50
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.50 E-value=1.4e-06 Score=87.66 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=106.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC-----CCCcchhhhhcCCCCCCccccCCHHHHHhc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~ 100 (220)
.+++|+|+|+ |.+|+.+++.+.+.. +++++++.++. ..|-+...+..... ...-..+.+.+++.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELA--EAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHh--hccCCCCHHHHHHH
Confidence 6799999996 999999999986543 67899988752 12333333221000 00001123332211
Q ss_pred cc-cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCC-C--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHH
Q 027650 101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI-Q--LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (220)
Q Consensus 101 ~~-~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~-~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a 176 (220)
+. .....||+||+|.......+...++++|+|||...-+. . -++.++|.++|+++|+.+.+..+..-|+-++.-+-
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~ 620 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ 620 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence 10 01135899999987777778889999999999654443 2 26889999999999999999988887877666554
Q ss_pred HHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650 177 ISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR 210 (220)
Q Consensus 177 ~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~ 210 (220)
..+. ...+|.=+|- --|||..-.|-+
T Consensus 621 ~~~~-~g~~i~~i~G-------ilnGT~nyIl~~ 646 (819)
T PRK09436 621 NLLN-AGDELLKFEG-------ILSGSLSFIFGK 646 (819)
T ss_pred HHHh-ccCcEEEEEE-------EEeChHHHHhhh
Confidence 3331 1245555554 356666654443
No 51
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.49 E-value=9.7e-07 Score=71.62 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=30.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+||+|+|+ ||||+.+++.+.+.++++|+++.|+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence 58999997 9999999999998999999999984
No 52
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.49 E-value=2.1e-06 Score=78.28 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHH-HHhccccCCCccE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV 109 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DV 109 (220)
.+|+||+|+||||..|+++++++. .+|..+|+.+.+....|+.+. +.+ ....+ .++++ .++ ++|+
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~-~~~~~~~~~------~vD~ 69 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRV-REVDSFDFS------QVQL 69 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEE-eeCChHHhc------CCCE
Confidence 467899999999999999999999 689999999987665666543 111 11222 22221 133 7999
Q ss_pred EEEccCchhHHHHHHHHHHCCCcEE------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650 110 VIDFTDASTVYDNVKQATAFGMRSV------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI 170 (220)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vV------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~ 170 (220)
|+-++++....+.+..+.++|+.+| .+-|.++.++++.+. + ..++-.|| |..++.
T Consensus 70 vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~----~--~~iIAnPgC~~t~~~ 137 (336)
T PRK05671 70 AFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLA----A--PFLVSSPSASAVALA 137 (336)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHcccc----C--CCEEECCCcHHHHHH
Confidence 9944555555778888899999887 333444554433321 2 46777899 444443
No 53
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.48 E-value=1.3e-06 Score=71.03 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=75.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|+||+++|. |+||+.+++.+.+ .+++|. ++|+.. ....++. ..|+...+++.++.+ .+|+||-+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAK-AGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHH-TTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHHh-cCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence 789999996 9999999999976 488876 577642 2233343 246788899999987 689988655
Q ss_pred Cc-hhHHHHHHH--H---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 115 DA-STVYDNVKQ--A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 115 ~p-~~~~~~~~~--a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
+. +.+.+.+.. . ++.|. +||-++..++++..++.+..++.|+..+=+|=
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 44 333444333 2 23444 45567778889999999999888888876553
No 54
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=98.48 E-value=2e-06 Score=78.46 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=82.0
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
..++||+|+||||..|+++++++.+ +|..+|+.+......|+.+. +.+ ..+.+. ++++..- .++|++
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvv 70 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLA 70 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEE
Confidence 3568999999999999999999998 89999999877656677665 221 134443 5555431 278999
Q ss_pred EEccCchhH-HHHHHHHHHCCCcEEEeC-------------CCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650 111 IDFTDASTV-YDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI 170 (220)
Q Consensus 111 IDfT~p~~~-~~~~~~al~~G~~vVigT-------------tG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~ 170 (220)
+ |+.|+.. .+.+..+.++|+.||-=+ |.++.+..+.| ++ ..++-.|| +..++.
T Consensus 71 f-~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i----~~--~~iIAnPgC~~t~~~ 138 (336)
T PRK08040 71 F-FVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADY----RN--RNIIAVADSLTSQLL 138 (336)
T ss_pred E-ECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhh----cc--CCEEECCCHHHHHHH
Confidence 9 6666555 578888889999877322 33455443433 22 35777799 555553
No 55
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.47 E-value=1.6e-06 Score=78.76 Aligned_cols=119 Identities=20% Similarity=0.279 Sum_probs=76.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVI 111 (220)
|+||+|+|++|+.|+++++.+.+ +|.++|+++......|+... +.+ ..+.+ .|++ ..+. ++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~g----~~i~v-~d~~~~~~~------~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FKG----KELKV-EDLTTFDFS------GVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eCC----ceeEE-eeCCHHHHc------CCCEEE
Confidence 57999999999999999999998 79999999876655565543 111 12333 2333 2232 799999
Q ss_pred EccCchhHHHHHHHHHHCCCcEE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHHH
Q 027650 112 DFTDASTVYDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSIL 171 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vV-------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~l 171 (220)
.++......+.+..++++|+.|| .+-|+++.++ |.. +.+ ..++-.|| +..++.+
T Consensus 69 ~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~---i~~-~~~--~~iVanp~C~~t~~~l 136 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEA---LAE-HRK--KGIIANPNCSTIQMVV 136 (334)
T ss_pred ECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHH---Hhh-hhc--CCeEECccHHHHHHHH
Confidence 54544555788888889999555 2333445543 332 212 24777788 5555543
No 56
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.46 E-value=5.2e-07 Score=82.07 Aligned_cols=94 Identities=21% Similarity=0.178 Sum_probs=69.1
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCC------------CCCCccccCCHHHHHhccccC
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS 104 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~------------~~~gv~v~~dl~~~l~~~~~~ 104 (220)
|||+|+ |++|+.+++.+.+.++++||++.|.+.. ...+..+.|.. ...++.+..++++++.
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~----- 74 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE----- 74 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence 689997 9999999999988899999999995321 00111111110 1234667788999985
Q ss_pred CCccEEEEccCchhHHHHHHHHHHCCCcE-EEeCC
Q 027650 105 KARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVP 138 (220)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~v-VigTt 138 (220)
++|+|+++|+...+..+....++.|... ++|-|
T Consensus 75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 7999999998888899999999988555 45555
No 57
>PLN02700 homoserine dehydrogenase family protein
Probab=98.43 E-value=3.5e-06 Score=77.90 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=100.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC-----C----CCcchhhhhc---C-CCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----S----VGEDIGMVCD---M-EQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~----~g~d~g~l~g---~-~~~~gv~v~-- 91 (220)
+++|+|+|. |.+|+.+++.+.+.. ++.++|+.++. . .|-|+..+.. . .....+..+
T Consensus 3 ~i~i~liG~-G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 3 KIPVLLLGC-GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred EEEEEEEec-ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 479999996 999999999876542 36788998852 1 1334333221 0 001111001
Q ss_pred -----------------CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650 92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (220)
Q Consensus 92 -----------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~ 154 (220)
.+..+.+.. ...+|+||+|......++++.++++|+|||..--+......+++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~- 156 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA- 156 (377)
T ss_pred ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence 122233321 2469999999887778999999999999995543433334455666664
Q ss_pred cCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650 155 ASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR 210 (220)
Q Consensus 155 ~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~ 210 (220)
+|+.+.+..+..-|.-++..+-..+. ...+|.=+|- .-|||..-.|-+
T Consensus 157 ~~~~~~yEatVgaGlPiI~tl~~ll~-sGd~I~~I~G-------IlnGT~nyIl~~ 204 (377)
T PLN02700 157 HPRRIRHESTVGAGLPVIASLNRILS-SGDPVHRIVG-------SLSGTLGYVMSE 204 (377)
T ss_pred cCCeEEEEeeeeeccchHHHHHHHhh-ccCCEEEEEE-------EEeChHHHHHHH
Confidence 68999998888877766665543332 2346666665 456666554433
No 58
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=98.42 E-value=4e-06 Score=75.79 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
+|+||+|+|++|..|+++++++.++|+++|+.+..+. +.+. .+.++... ++|+|+ |
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--~~~~---------------~~~~~~~~------~~DvvF-l 56 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--RKDA---------------AARRELLN------AADVAI-L 56 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--CCcc---------------cCchhhhc------CCCEEE-E
Confidence 5789999999999999999999999999999987543 1111 11223332 789999 6
Q ss_pred cCchhH-HHHHHHHHHCCCcEE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650 114 TDASTV-YDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI 170 (220)
Q Consensus 114 T~p~~~-~~~~~~al~~G~~vV-------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~ 170 (220)
+.|+.. .+.+..+.+.|+.|| .|-|.+++++.++|+ . ..++-.|| |..++.
T Consensus 57 alp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~--~~~IanPgC~~Ta~~ 122 (313)
T PRK11863 57 CLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----A--AKRVANPGCYPTGAI 122 (313)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----c--CCeEEcCCcHHHHHH
Confidence 555555 677888889998776 333444555544443 2 35677788 555554
No 59
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.39 E-value=1.7e-06 Score=78.64 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=69.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCcccc-CCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVM-SDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI 111 (220)
+|+||+|+|++|..|.+++|.+..||++|+.-+..+...|+.+.++... ......+.. -|.+++.. .++|||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF 75 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF 75 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence 4899999999999999999999999999966655555578877765431 000112221 23444422 3689999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEE
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVi 135 (220)
-+++.....+.+...++.|+.||=
T Consensus 76 lalPhg~s~~~v~~l~~~g~~VID 99 (349)
T COG0002 76 LALPHGVSAELVPELLEAGCKVID 99 (349)
T ss_pred EecCchhHHHHHHHHHhCCCeEEE
Confidence 666666668999999999999763
No 60
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.38 E-value=4.7e-06 Score=83.81 Aligned_cols=164 Identities=14% Similarity=0.100 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCCccccCCHHHHHh
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLG 99 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~g~l~g~~~~~gv~v~~dl~~~l~ 99 (220)
.+++|+|+|+ |.+|+.+++.+.+.. +++|++++++. ..|-+...+...-. ......+++.+++
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e 533 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL 533 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence 4689999997 999999999986532 57889999863 12323333221000 0001112332221
Q ss_pred cccc-CCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCC---CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650 100 SISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (220)
Q Consensus 100 ~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~---~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~ 175 (220)
.+.. ....+|+||+|..+....+...++++|+|||...-.. ..+..++|.++|+++|+.+.+..+..-|+-++.-+
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~l 613 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHTV 613 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHHH
Confidence 1100 0123599999988777778889999999999654432 34788999999999999999998888777664332
Q ss_pred HHHhcCCCCCeEEEeccCCCCCCCCchhhHHHH
Q 027650 176 AISASFHYKNVEIVESRPNARMQLKSPTTSPTL 208 (220)
Q Consensus 176 a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~ 208 (220)
- .+.....+|.=+|- .-|||..-++
T Consensus 614 ~-~l~~~gd~i~~i~G-------IlnGT~nyi~ 638 (810)
T PRK09466 614 R-DLRNSGDSILAISG-------IFSGTLSWLF 638 (810)
T ss_pred H-HHHhccCcEEEEEE-------EEccHHHHHH
Confidence 2 22112456665554 3677776544
No 61
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.36 E-value=6.5e-06 Score=75.91 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=74.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV 109 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV 109 (220)
|+||+|+||||..|+++++.+.++++++ |+...++ ..|.....+.| ....+.+ +.+. +. ++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence 6899999999999999999888899998 8774333 33333322222 1223332 2333 33 7999
Q ss_pred EEEccCchhH-HHHHHHHHHCCCc-EEEeC--------------CCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 110 VIDFTDASTV-YDNVKQATAFGMR-SVVYV--------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 110 VIDfT~p~~~-~~~~~~al~~G~~-vVigT--------------tG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
++ |+.|..+ .+.+..+.++|++ +||-- |.++++++ .. ..+.|+.++..||=+.-.
T Consensus 69 vf-~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i---~~-~~~~g~~iIanPnC~tt~ 139 (369)
T PRK06598 69 II-TCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVI---DD-ALANGVKTFVGGNCTVSL 139 (369)
T ss_pred EE-ECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHH---Hh-hhhcCCCEEEcCChHHHH
Confidence 88 7766655 5777888899975 34333 33455543 33 334566678889944433
No 62
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=1.1e-05 Score=69.21 Aligned_cols=120 Identities=11% Similarity=0.066 Sum_probs=74.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
++||+|+|+ |+||+.+++.+.... +.+-+.++++.. .+....+. ..+++.++.|++++++ ++|+||.
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii 72 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL 72 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence 479999997 999999999887653 344233344321 12233333 2356677889988885 7999998
Q ss_pred ccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS 169 (220)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv 169 (220)
.++|..+.+.+..... .+..+|.-.-|++.++++ +.... +.+++ .=||+..-+
T Consensus 73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~---~~~~~-~~~v~r~~Pn~a~~v 128 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLE---ERLPK-GTPVAWIMPNTAAEI 128 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHH---HHcCC-CCeEEEECCcHHHHH
Confidence 8888888777765432 354444444489887544 33321 22343 337766544
No 63
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=98.30 E-value=3.7e-06 Score=68.49 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=59.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC---CC--------------C--cccc--CCH
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ---PL--------------E--IPVM--SDL 94 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~---~~--------------g--v~v~--~dl 94 (220)
|||+|+|. ||+||.+.|.+...+++||+++-|....-+...-++.-.. ++ | +.++ .++
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 69999996 9999999999999999999999885310111111100000 00 0 1111 233
Q ss_pred HHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP 138 (220)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt 138 (220)
+++-.. +.++|+|+|+|..-...+.+...+++|.. ||++.|
T Consensus 80 ~~i~W~---~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap 121 (151)
T PF00044_consen 80 EEIPWG---ELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAP 121 (151)
T ss_dssp GGSTHH---HHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS
T ss_pred cccccc---cccccEEEeccccceecccccccccccccceeeccc
Confidence 332110 12678888888777777777777777744 444444
No 64
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=98.30 E-value=1.8e-05 Score=72.38 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=78.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV 110 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVV 110 (220)
..+||+|+|++|+.|+++++.+.+ +|..+|+.+......|+.... .+ ..+. +.+++ +.+. ++|+|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~-v~~~~~~~~~------~~D~v 73 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYT-VEELTEDSFD------GVDIA 73 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeE-EEeCCHHHHc------CCCEE
Confidence 457999999999999999999988 899999988766555665533 11 1222 22222 3333 79999
Q ss_pred EEccCchhH-HHHHHHHHHCCCcEEEeC-------------CCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650 111 IDFTDASTV-YDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI 170 (220)
Q Consensus 111 IDfT~p~~~-~~~~~~al~~G~~vVigT-------------tG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~ 170 (220)
+ |+.|+.. .+.+..+.+.|+.||--+ |.++.++++..+ ..+..-.++-.|| +..++.
T Consensus 74 f-~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~--~~~~~~~iIanPgC~~t~~~ 145 (344)
T PLN02383 74 L-FSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIK--LGKGKGALIANPNCSTIICL 145 (344)
T ss_pred E-ECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhh--hcccCCcEEECCCcHHHHHH
Confidence 9 7766655 677788889998887322 334555433311 0011134777799 555553
No 65
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.30 E-value=1.4e-05 Score=70.55 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=78.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
++||+|+|+ |.||+.+++.+.. .++++. ++|++. .....+. ..++.+.+++++++. ++|+||.+.
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML 66 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence 579999996 9999999998876 578876 467632 2222232 235666788888875 799999666
Q ss_pred CchhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650 115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (220)
Q Consensus 115 ~p~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf 165 (220)
++....+.+. ..++.|.-+ +-++..++...++|.+..++.|+.++-+|-|
T Consensus 67 p~~~~~~~v~~~~~~~~~~~~~g~ii-id~st~~~~~~~~l~~~~~~~g~~~~d~pv~ 123 (296)
T PRK11559 67 PNSPHVKEVALGENGIIEGAKPGTVV-IDMSSIAPLASREIAAALKAKGIEMLDAPVS 123 (296)
T ss_pred CCHHHHHHHHcCcchHhhcCCCCcEE-EECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence 5444433332 223445444 4555667777888888888888888877744
No 66
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.30 E-value=3.7e-06 Score=75.57 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------hcCCCCCCccccCCHHHHHhccccCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l-------~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (220)
.+|||+|+|+ |.||..++..+... +.++. +++++.. .+.+... .|..-+..+..++++++++.
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~-G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~------ 73 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASK-GVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA------ 73 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc------
Confidence 4679999997 99999999988764 67755 4555210 1111110 01000011445678888774
Q ss_pred CccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHH--HHHHHHHhhh---cCceEEEcCCCcHH
Q 027650 106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIG 168 (220)
Q Consensus 106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~--~~~L~~aA~~---~~v~vviapNfS~G 168 (220)
++|+||-+.++..+ +.+...++.+..+|.-++|+++++ ...+.+...+ .++.++..||+.--
T Consensus 74 ~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 74 GADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred CCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 79999855555544 444444566777777777876543 4556665544 56777778887664
No 67
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.29 E-value=4.6e-06 Score=64.39 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=61.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCccccCCHH--HHHhccccCCCccEEEEc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT--MVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~l~g~~~~~gv~v~~dl~--~~l~~~~~~~~~DVVIDf 113 (220)
||+|+|++|++|+.+++.+..+|+++++++++++ ..|+++....+ ...-.++.+++ .... .++|+|+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~DvV~~~ 72 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE-----LAVDIVFLA 72 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh-----cCCCEEEEc
Confidence 6999999899999999999999999999997743 34555544321 11101111221 1111 378999977
Q ss_pred cCchhHHHH---HHHHHHCCCcEEEeCC
Q 027650 114 TDASTVYDN---VKQATAFGMRSVVYVP 138 (220)
Q Consensus 114 T~p~~~~~~---~~~al~~G~~vVigTt 138 (220)
++++.+.+. +..+++.|+.+|--++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 73 LPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence 777777774 3445678887774333
No 68
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.24 E-value=1e-05 Score=70.36 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=67.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
+|+||+|+|+ |+||+.+++.+.+.. ...-+.+++++. +....+. ..+++.+..+.++++. ++|+||.
T Consensus 1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil 68 (267)
T PRK11880 1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVL 68 (267)
T ss_pred CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEE
Confidence 4789999997 999999999887642 223455677642 2222222 1235667778888775 7999998
Q ss_pred ccCchhHHHHHHHHHHC-CCcEEEeCCCCCHHHHHH
Q 027650 113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSA 147 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~-G~~vVigTtG~~~e~~~~ 147 (220)
++.|..+.+.++.+... +..+|.-+.|.+.++++.
T Consensus 69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~~ 104 (267)
T PRK11880 69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLER 104 (267)
T ss_pred EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHHH
Confidence 88888777777665543 444554455787655443
No 69
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.23 E-value=7.7e-06 Score=69.56 Aligned_cols=95 Identities=20% Similarity=0.318 Sum_probs=66.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
...||+|+|+ |.+|+.+++.+. ...+++++|++|.+. ...+...+ ..++..++++++++.+ .++|++|.
T Consensus 83 ~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i~---g~~v~~~~~l~~li~~----~~iD~ViI 152 (213)
T PRK05472 83 RTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKIG---GIPVYHIDELEEVVKE----NDIEIGIL 152 (213)
T ss_pred CCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEeC---CeEEcCHHHHHHHHHH----CCCCEEEE
Confidence 4579999997 999999998643 457899999999632 11121110 1112234678888763 47999997
Q ss_pred ccCchhHHHHHHHHHHCCCcEE-EeCC
Q 027650 113 FTDASTVYDNVKQATAFGMRSV-VYVP 138 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV-igTt 138 (220)
++++..+.+....++++|++.| +.+|
T Consensus 153 a~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 153 TVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred eCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 7777777888899999996544 4455
No 70
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=98.22 E-value=1.8e-05 Score=72.13 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=60.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEEEEc
Q 027650 37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVIDf 113 (220)
||+|+||+|+.|+++++.+.+ +|..+|+.+......|+... +.+ ..+. ..+++ +.+. ++|+|+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~~------~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESFE------GIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHhc------CCCEEEEC
Confidence 699999999999999999988 78899987766555565543 111 1122 22222 2233 79999966
Q ss_pred cCchhHHHHHHHHHHCCCcEE
Q 027650 114 TDASTVYDNVKQATAFGMRSV 134 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV 134 (220)
+......+.+..+++.|+.||
T Consensus 69 ~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 666666788888999998655
No 71
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=98.21 E-value=2.5e-05 Score=70.53 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=73.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
.||+|+|++|.+|.+++|++..+|++||+.+..... + . ..+.++++. ++|+++ |+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~----~------~~~~~~~~~------~~D~vF-lal 57 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------K----D------AAERAKLLN------AADVAI-LCL 57 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------c----C------cCCHhHhhc------CCCEEE-ECC
Confidence 489999999999999999999999999999876431 0 0 013344443 799999 655
Q ss_pred chh-HHHHHHHHHHCCCcEE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHHH
Q 027650 116 AST-VYDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSIL 171 (220)
Q Consensus 116 p~~-~~~~~~~al~~G~~vV-------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~l 171 (220)
|+. ..+.+..+.+.|+.|| .|-|.++++..++|. + ..++-.|| |..++.|
T Consensus 58 p~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~----~--a~lIAnPgC~aTa~~L 122 (310)
T TIGR01851 58 PDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR----N--SKRIANPGCYPTGFIA 122 (310)
T ss_pred CHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc----c--CCEEECCCCHHHHHHH
Confidence 554 4677788888898766 333444554444443 2 35777788 6666643
No 72
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.20 E-value=1.7e-05 Score=68.88 Aligned_cols=114 Identities=10% Similarity=0.063 Sum_probs=70.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
|||+++|+ |+||+.+++.+.+.. ..+-+.+++++. ....++.. .. ++.++++.++++. ++|+||..
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVila 68 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFLA 68 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEEE
Confidence 48999996 999999999987652 223345566531 22223321 22 4667788888875 68999988
Q ss_pred cCchhHHHHHHHH-HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 114 T~p~~~~~~~~~a-l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
++|+...+.+... +..|..+|.-..|.+.++++.+. ......+...||
T Consensus 69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~---~~~~~~~r~~P~ 117 (258)
T PRK06476 69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEWI---GHDVKLVRAIPL 117 (258)
T ss_pred eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHh---CCCCCEEEECCC
Confidence 8887776666543 34566666644577776655543 322234444465
No 73
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=98.16 E-value=6.9e-06 Score=74.86 Aligned_cols=96 Identities=23% Similarity=0.131 Sum_probs=66.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCCC-----CCCcccc--CC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDMEQ-----PLEIPVM--SD 93 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~l~g~~~-----~~gv~v~--~d 93 (220)
++||+|+|+ ||||+.+.|.+.+.++++|+++.|+. -.|+--+.+...+. ...+.++ .+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 489999998 99999999999988999999999831 01221111100000 0122332 26
Q ss_pred HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (220)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig 136 (220)
+++.-. .++|+||++|......+.+...++.|...|+=
T Consensus 81 ~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 81 IADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 666654 38999998888888889999999999766653
No 74
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.15 E-value=1.8e-05 Score=58.26 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=60.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccEEEEc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (220)
||+++|+ |+||..+++.+.+.. ..++.-+++++ .+.+.++. ..+++.++. +..++++ .+|+||-+
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila 68 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---KEYGVQATADDNEEAAQ------EADVVILA 68 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence 7999996 999999999987753 26777565653 23334443 244555555 7888886 69999978
Q ss_pred cCchhHHHHHHHH--HHCCCcEEE
Q 027650 114 TDASTVYDNVKQA--TAFGMRSVV 135 (220)
Q Consensus 114 T~p~~~~~~~~~a--l~~G~~vVi 135 (220)
..|....+.+... ...++-+|.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 8888887776654 667777664
No 75
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.13 E-value=4.1e-05 Score=69.63 Aligned_cols=151 Identities=16% Similarity=0.081 Sum_probs=93.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|+||||+|+||.+|+.+++.+.+ ++.++.+.++.+ ...|+...++.+. . +.+-++..+.... .+.|+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~--~--~~v~~~~~~~~~~----~~~Divf- 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK--S--IGVPEDAADEFVF----SDVDIVF- 71 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc--c--ccCcccccccccc----ccCCEEE-
Confidence 57999999999999999999988 888887766664 4567764444431 1 2333322222221 3799888
Q ss_pred ccCc-hhHHHHHHHHHHCCCcEEEeCCCC-------------CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHH
Q 027650 113 FTDA-STVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (220)
Q Consensus 113 fT~p-~~~~~~~~~al~~G~~vVigTtG~-------------~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~ 178 (220)
|+.+ +...++...+.++|..||--+..| +++. |.+.-+ +| .++..||=|.-. ++. ..+-
T Consensus 72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~---l~~~~~-rg-~IianpNCst~~-l~~-aL~P 144 (334)
T COG0136 72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEH---LIDYQK-RG-FIIANPNCSTIQ-LVL-ALKP 144 (334)
T ss_pred EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHH---HHhhhh-CC-CEEECCChHHHH-HHH-HHHH
Confidence 7776 444788899999998887665543 4444 444433 33 578889977655 222 2222
Q ss_pred hcCCCCCeEEEeccCCCCCCCCchhhH
Q 027650 179 ASFHYKNVEIVESRPNARMQLKSPTTS 205 (220)
Q Consensus 179 ~~~~~~diEIiE~HH~~K~DaPSGTA~ 205 (220)
+-+. +. +|.-|..-..|-||.=.
T Consensus 145 L~~~-~~---i~~v~VsTyQAvSGAG~ 167 (334)
T COG0136 145 LHDA-FG---IKRVVVSTYQAVSGAGA 167 (334)
T ss_pred HHhh-cC---ceEEEEEEeehhhhcCc
Confidence 3211 11 34444445556676655
No 76
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.13 E-value=1.5e-05 Score=69.39 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=123.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
..||.+-|.+|+-|..|.+...+. +..+||.+.+...|. ..+|.|+|.+..|+.++ .++|.-+.|-
T Consensus 38 ~TkVi~QGfTGKqgTFHs~q~~eY-gTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyV 103 (329)
T KOG1255|consen 38 DTKVICQGFTGKQGTFHSQQALEY-GTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYV 103 (329)
T ss_pred CceEEEecccCCccceeHHHHHHh-CCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEe
Confidence 359999999999999999987764 889999998866443 26788999999999875 7899877799
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEe--c
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE--S 191 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE--~ 191 (220)
+|.....-+..++++-+++++.-| |....+.-++...-...+-.-++-|| -.|+.--. .-.|-|+- .
T Consensus 104 Ppp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPN-CPGII~p~---------qckIGImPg~I 173 (329)
T KOG1255|consen 104 PPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPN-CPGIINPG---------QCKIGIMPGHI 173 (329)
T ss_pred CChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCC-CCCccCcc---------ceeeccccccc
Confidence 999999999999999999988766 99888888888887776677788888 45652111 11222222 2
Q ss_pred cCCCCC--CCCchhhHHHHHHhhhHHhhhcC
Q 027650 192 RPNARM--QLKSPTTSPTLVRSTTEKIFQQT 220 (220)
Q Consensus 192 HH~~K~--DaPSGTA~~~~~~~~~~~~~~~~ 220 (220)
|.+.|. =+-|||---.++.+||+-.+.|+
T Consensus 174 hk~G~IGIVSRSGTLTYEaVhQTT~vglGQs 204 (329)
T KOG1255|consen 174 HKRGKIGIVSRSGTLTYEAVHQTTQVGLGQS 204 (329)
T ss_pred ccCCeeEEEecCCceeehhhhhhccccccce
Confidence 333332 25689988788888888777764
No 77
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.10 E-value=6.2e-05 Score=67.04 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=73.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||+++|. |+||+.+++.+.+ .+++|+ ++|++. .....+. ..|+..+.+++++.... ..+|+||.+.+
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~~---~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSKL---EAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHhC---CCCCEEEEEec
Confidence 48999996 9999999999876 478877 578642 2222232 34667788999887520 13799887766
Q ss_pred ch-hHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650 116 AS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (220)
Q Consensus 116 p~-~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi 161 (220)
++ .+.+.+... ++.| .+||-++..++++..++.+..++.|+..+=
T Consensus 69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 65 333433333 2334 466666666666667777777777776553
No 78
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.10 E-value=5.6e-05 Score=66.53 Aligned_cols=118 Identities=11% Similarity=0.116 Sum_probs=74.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|||+++|+ |+||..+++.+.+.. ..++. ++++.. .+.+..+. ..+|+.++.+..++.. ++|+||-
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil 71 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---QKYGVKGTHNKKELLT------DANILFL 71 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence 59999996 999999999988653 24444 466532 11222332 1346667788888775 7899997
Q ss_pred ccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650 113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGS 169 (220)
Q Consensus 113 fT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~Gv 169 (220)
+..|....+.+.... +.+.-+|.-..|.+.+++.++. . .+.|++.+ ||+...+
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~---~-~~~~v~r~mPn~~~~~ 128 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL---Q-KDVPIIRAMPNTSAAI 128 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc---C-CCCeEEEECCCHHHHH
Confidence 778877766665443 3344444334788887655533 2 34677755 7765333
No 79
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=98.08 E-value=1.1e-05 Score=73.55 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=64.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh---hc----CCCCCCcccc-
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV---CD----MEQPLEIPVM- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g-~l---~g----~~~~~gv~v~- 91 (220)
++||||+|+ ||||+.++|.+.+.|+++|+++.|+.. .|+--+ ++ .| .+ ...+.++
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~-g~~i~v~~ 82 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFG 82 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEEC-CEEEEEEE
Confidence 589999997 999999999998889999999998421 122111 11 00 00 0112222
Q ss_pred -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEE
Q 027650 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi 135 (220)
.|++++-- .+.++|+||++|......+.+...+++|...|+
T Consensus 83 ~~~p~~~~w---~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi 124 (338)
T PLN02358 83 IRNPEDIPW---GEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124 (338)
T ss_pred cCCcccCcc---cccCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence 23444321 013799999889888889999999999975554
No 80
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.07 E-value=5.7e-05 Score=71.23 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=85.4
Q ss_pred ceEEEEcCC---CHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650 36 IKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
-+|+|+|++ |++|..+.+.+.+. ++ ++.. +.+.. .+ -.|+++|.+++++-. .+|++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~-gf~g~v~~-Vnp~~-----~~------i~G~~~~~sl~~lp~------~~Dla 68 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG-GYKGKIYP-VNPKA-----GE------ILGVKAYPSVLEIPD------PVDLA 68 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC-CCCCcEEE-ECCCC-----Cc------cCCccccCCHHHCCC------CCCEE
Confidence 379999997 78999999999864 44 4543 44431 12 347899999999853 79998
Q ss_pred EEccCchhHHHHHHHHHHCCCcEE-EeCCCCCH------HHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 111 IDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vV-igTtG~~~------e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
|.+++++.+.+.++.|.+.|++.+ +-+.||.+ +..++|.++|+++|+.++= || ++|+
T Consensus 69 vi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG-Pn-c~G~ 132 (447)
T TIGR02717 69 VIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG-PN-CLGI 132 (447)
T ss_pred EEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe-cC-eeeE
Confidence 989999999999999999998765 45667754 2347899999999888764 66 4554
No 81
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.06 E-value=5.5e-05 Score=66.77 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=74.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
|+||+|+|+ |.||..+++.+.+... .+++....+.. .....+.. .. ++.++.+.++++. ++|+|
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~--~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV 68 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKN--EHFNQLYD---KYPTVELADNEAEIFT------KCDHS 68 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcH--HHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence 679999997 9999999999876531 46665433221 11222211 12 3445678887765 79999
Q ss_pred EEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGS 169 (220)
Q Consensus 111 IDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~Gv 169 (220)
|.+.+|..+.+.+..+ +..++.+|+-.-|.+.++++++ ... .+++.+ ||...-+
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~---~~~--~~vvR~MPN~~~~~ 126 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TPG--LQVSRLIPSLTSAV 126 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCC--CCEEEEeCccHHHH
Confidence 9778888777766644 4467777775668988765553 322 355533 8866554
No 82
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.03 E-value=0.00012 Score=65.23 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=75.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||+++|. |.||+.+++.+.+. +.+|+ ++|++. .....+. ..|+.++++++++.+.. .++|+||-+.+
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~-g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRG-GHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP 68 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence 48999996 99999999998864 78875 477642 2222332 34677788999887520 13798885555
Q ss_pred ch-hHHHHH---HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 116 AS-TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 116 p~-~~~~~~---~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
+. .+.+.+ ...++.|. +||-++..+++...++.+.+++.|+..+=+|...
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG 122 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSG 122 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCc
Confidence 44 333333 33344454 4444444445566677788888888887666643
No 83
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.01 E-value=2e-05 Score=71.55 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=63.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccchhhh--hc----CCCCCCcccc--C
Q 027650 37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GEDIGMV--CD----MEQPLEIPVM--S 92 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~-------------g~d~g~l--~g----~~~~~gv~v~--~ 92 (220)
||||+|+ ||+|+.+.|++.+. ++++++++.|.... |+--+++ .| .+ ...+.++ .
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence 6999998 99999999998875 46999999873210 1100000 00 00 0123333 3
Q ss_pred CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCC-CcEEEeCC
Q 027650 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP 138 (220)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigTt 138 (220)
+++++-.. +.++|+|+++|.+....+.+..++++| +.|++..|
T Consensus 79 ~p~~~~w~---~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 79 TPEALPWR---ALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred Chhhcccc---ccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 56655321 138999999999999999999999999 55555555
No 84
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.01 E-value=3.7e-05 Score=68.25 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=68.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC----------CCCCCccccCCHHHHHhccccC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----------EQPLEIPVMSDLTMVLGSISQS 104 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~----------~~~~gv~v~~dl~~~l~~~~~~ 104 (220)
||||+|+|+ |.||..++..+... +.++ .++++.. ..+..+... ....++...+++++++.
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~-g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARN-GHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA----- 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence 679999997 99999999988764 6775 4566521 111111100 00114555678887775
Q ss_pred CCccEEEEccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhh-----cCceEEEcCCCc
Q 027650 105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS 166 (220)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~-----~~v~vviapNfS 166 (220)
++|+||-++.+....+.+.... ..+..+|.-+.|++++...++.+..++ ....++..|++.
T Consensus 71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~ 139 (325)
T PRK00094 71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA 139 (325)
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence 7899996666654444443333 344445543336665443333333332 134566678754
No 85
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.99 E-value=4.6e-05 Score=69.85 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=61.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI 111 (220)
+||+|+||||..|+++++++.++|+++ |..+......|+.+. +.+ ..+.+. .+.++. . +.|+|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~~-~------~~Divf 73 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINSF-E------GVDIAF 73 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHHh-c------CCCEEE
Confidence 799999999999999999999899999 666655555666552 221 133332 133333 3 799998
Q ss_pred EccCchhH-HHHHHHHHHCCCcEEE
Q 027650 112 DFTDASTV-YDNVKQATAFGMRSVV 135 (220)
Q Consensus 112 DfT~p~~~-~~~~~~al~~G~~vVi 135 (220)
|+.|... .+.+..+.++|+.||-
T Consensus 74 -~a~~~~~s~~~~~~~~~~G~~VID 97 (347)
T PRK06728 74 -FSAGGEVSRQFVNQAVSSGAIVID 97 (347)
T ss_pred -ECCChHHHHHHHHHHHHCCCEEEE
Confidence 6655554 6777888899987773
No 86
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.98 E-value=0.00013 Score=64.41 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=73.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (220)
||+|+|. |.||+.+++.+... ++++. ++|+.. .....+. ..|+...+++++++. ++|+||.+.+.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKA-GYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence 6999996 99999999988764 78876 567542 2233332 235556678888875 79999955444
Q ss_pred hhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 117 STVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 117 ~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
....+.+. ..+..|. +|+-++..++...++|.+..++.|+.++-+|=
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecCC
Confidence 33333221 1123343 44455566677778888888888888887663
No 87
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.92 E-value=8.2e-05 Score=68.97 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=62.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCc-------------------chhhhhcCCCCCCcccc---
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGE-------------------DIGMVCDMEQPLEIPVM--- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~-------------------d~g~l~g~~~~~gv~v~--- 91 (220)
|.||+|.|+||.+|+.+++.+.+.| .++|++++....... ...++...-...++.++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 5699999999999999999998876 699999984211000 00011000000112222
Q ss_pred CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEE
Q 027650 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi 135 (220)
+.+.+++.. .++|+|+....-....+....|+++|++|.+
T Consensus 81 ~~~~~l~~~----~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL 120 (385)
T PRK05447 81 EGLCELAAL----PEADVVVAAIVGAAGLLPTLAAIRAGKRIAL 120 (385)
T ss_pred hHHHHHhcC----CCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence 234455542 4689999666555567778999999999998
No 88
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.92 E-value=9.9e-05 Score=64.11 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=70.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
|||+++|+ |.||..+++.+.+. +. +++...++.. .....+. ..|+.+.++.+++.. ++|+||
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi 66 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII 66 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence 68999996 99999999998764 33 6654336532 2222222 346777888888875 789999
Q ss_pred EccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCc
Q 027650 112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLS 166 (220)
Q Consensus 112 DfT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS 166 (220)
.+..|....+.+.... ..+.-+|.-+.|.+.++.+ +.... .+++ ..||..
T Consensus 67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~ 120 (266)
T PLN02688 67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTP 120 (266)
T ss_pred EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcH
Confidence 8887777666665443 3454445434577766544 33322 1555 467753
No 89
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=97.89 E-value=0.00016 Score=65.74 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=87.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhhcCCC-------
Q 027650 36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDMEQ------- 84 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~---~~-------------------~~~eLvg~vd~--~~~g~d~g~l~g~~~------- 84 (220)
+||+|+|. |+-.+.++.-+. .. .|+|+|+++|- .+.|+|+.+..-...
T Consensus 1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~ 79 (351)
T TIGR03450 1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA 79 (351)
T ss_pred CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence 69999997 999999987553 21 16799999995 568988876543210
Q ss_pred ---CCCcccc-----C------------------CHHHHHhccccCCCccEEEEccC---chhHHHHHHHHHHCCCcEEE
Q 027650 85 ---PLEIPVM-----S------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 85 ---~~gv~v~-----~------------------dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vVi 135 (220)
+.||.|. + |.-+.|.+ .++||+|.+-+ -.+..-++.+|++.|++.|-
T Consensus 80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~----~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN 155 (351)
T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKD----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVN 155 (351)
T ss_pred ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHh----cCCCEEEECCccchHHHHHHHHHHHHHcCCceEe
Confidence 1133221 1 23333443 68999997654 33445677899999999999
Q ss_pred eCCCCCHHHHHHHHHHhhhcCceEEEcCCCc-HHHHHHHH
Q 027650 136 YVPHIQLETVSALSAFCDKASMGCLIAPTLS-IGSILLQQ 174 (220)
Q Consensus 136 gTtG~~~e~~~~L~~aA~~~~v~vviapNfS-~Gv~ll~~ 174 (220)
++|-+... ..++.+.++++|+|++=.=--| +|..++..
T Consensus 156 ~~P~~ia~-~p~~a~~f~e~glPi~GDD~Ksq~GaTi~h~ 194 (351)
T TIGR03450 156 ALPVFIAS-DPEWAKKFTDAGVPIVGDDIKSQVGATITHR 194 (351)
T ss_pred ccCccccC-CHHHHHHHHHCCCCEecccccccCCCchHHH
Confidence 99965432 2457777788899977221113 67666544
No 90
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.89 E-value=0.00027 Score=63.03 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||+++|. |+||..+++.+.+. ++++. +++++. +...+. ..|+....+..++.. .+|+||-+.+
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~-G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARA-GHQLH-VTTIGP---VADELL----SLGAVSVETARQVTE------ASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHC-CCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence 48999996 99999999998764 67776 566532 122232 245666778888775 7999885443
Q ss_pred ch-hHHHHHH------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650 116 AS-TVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (220)
Q Consensus 116 p~-~~~~~~~------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap 163 (220)
.+ .+.+.+. ..+..| .+|+-++..++++..++.+.+++.|+.++=+|
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP 118 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP 118 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 33 2233321 112334 35666777888888999999888888887766
No 91
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00011 Score=65.10 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=78.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|+||+++|+ |+||+.+++-+.+..- -+-+-++++.. .....+. +.+|+.++++.+++.. ..|+|+-
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~~------~advv~L 68 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAVE------EADVVFL 68 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHHh------hCCEEEE
Confidence 579999997 9999999999987652 23444555532 1111233 2566666667777765 7999998
Q ss_pred ccCchhHHHHHHHHH--HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcH
Q 027650 113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSI 167 (220)
Q Consensus 113 fT~p~~~~~~~~~al--~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~ 167 (220)
...|....+.+..+. ..++.+|+=..|.+-++++. +.- +.+++.. ||..-
T Consensus 69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~---~l~--~~~vvR~MPNt~a 121 (266)
T COG0345 69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLER---LLG--GLRVVRVMPNTPA 121 (266)
T ss_pred EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHH---HcC--CCceEEeCCChHH
Confidence 888988888777764 47888887777998865444 433 3566633 77543
No 92
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.88 E-value=4.7e-05 Score=61.67 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=71.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D 108 (220)
||+|+|+ |.+|..++..+... +.++. ++.++. .+.....+.+..-+..+.+++|++++++ ++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~-g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad 71 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADN-GHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD 71 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHC-TEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred CEEEECc-CHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence 7999997 99999999988765 44443 454421 0000001111111235667899999996 799
Q ss_pred EEEEccCchhHHHHH---HHHHHCCCcEEEeCCCCCHHH----HHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 109 VVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 109 VVIDfT~p~~~~~~~---~~al~~G~~vVigTtG~~~e~----~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
++|-.++...+.+.+ ..+++.+..+|+-+-|+.... .+.+++......+.++.-|||+--+
T Consensus 72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence 988555655554444 444568888888776883211 1334454444446777779988766
No 93
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.87 E-value=0.00027 Score=63.00 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=68.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||+++|+ |+||..+++.+.+ .+.++++ +|++. .....+. ..++..+.+++++...+ ..+|+||-+.+
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~~---~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQRL---SAPRVVWVMVP 68 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhhc---CCCCEEEEEcC
Confidence 48999996 9999999999876 4788865 77642 2223333 22444456776665321 26899886666
Q ss_pred chhHHHHH---HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650 116 ASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (220)
Q Consensus 116 p~~~~~~~---~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap 163 (220)
+..+.+.+ ...++.|.-+|-.+++... +..++.+..++.|+..+=+|
T Consensus 69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYK-DSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCCcc-cHHHHHHHHHhcCCeEEecC
Confidence 55444443 3344566555554455433 33444445555677666444
No 94
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.86 E-value=5.2e-05 Score=69.21 Aligned_cols=99 Identities=20% Similarity=0.182 Sum_probs=66.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCC-----CCCCcccc--CC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDME-----QPLEIPVM--SD 93 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~l~g~~-----~~~gv~v~--~d 93 (220)
++||||+|. ||+||.+.|++.+.+++++|++-|+. -.|+--+++.--+ ....++++ .|
T Consensus 2 ~~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d 80 (337)
T PTZ00023 2 VVKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD 80 (337)
T ss_pred ceEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence 479999996 99999999998877899999997621 0122111110000 01123333 45
Q ss_pred HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
++++-.. +.++|+|+++|......+.+..++++|...|+=+
T Consensus 81 p~~lpW~---~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS 121 (337)
T PTZ00023 81 PAAIPWG---KNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS 121 (337)
T ss_pred hhhCCcc---ccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence 6665431 2489999988888888899999999998777644
No 95
>PRK07680 late competence protein ComER; Validated
Probab=97.86 E-value=0.00019 Score=62.96 Aligned_cols=100 Identities=10% Similarity=0.124 Sum_probs=63.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|||+|+|+ |.||+.+++.+.+...+ +-+.+++++. .....+.. .. ++.++.+.++++. ++|+||.
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~~------~aDiVil 68 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVIS------QSDLIFI 68 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHHH------hCCEEEE
Confidence 48999997 99999999998765322 3455677642 22222221 22 5667788888775 7999997
Q ss_pred ccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHH
Q 027650 113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSA 147 (220)
Q Consensus 113 fT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~ 147 (220)
++.|....+.+... +..+..+|.-+.|.+.++++.
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET 106 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 77777766666543 334544443344676554443
No 96
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.85 E-value=0.00027 Score=62.91 Aligned_cols=116 Identities=11% Similarity=0.116 Sum_probs=76.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|.||+++|. |+||..+++.+... +.++. ++|++. ....++. ..++....++.++.. ++|+||.+.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~~-G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLKQ-GHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence 458999996 99999999998764 67764 567642 2233332 235566778888775 789988665
Q ss_pred CchhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 115 ~p~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
+++...+.+. ..+..|. +|+-++..++++.+++.+..++.|+..+=+|-+.
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g 123 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence 5554333331 1223443 4455666677888888888888888877666544
No 97
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.82 E-value=0.00039 Score=62.34 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=61.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCccccCCHHHHHhccccCCCc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (220)
|||+|+|+ |.||..++..+.+. +.++. +++++.. +.....+.+...+.++.+++++++.+. ..+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~-g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSK-KISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHC-CCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence 58999998 99999999988764 56664 5665310 000100112111234557788888764 278
Q ss_pred cEEEEccCchhHHHHHHHHHH----CCCcEEEeCCCCCH
Q 027650 108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQL 142 (220)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al~----~G~~vVigTtG~~~ 142 (220)
|++|.++.+..+.+.++.... .+..+|+-+-|+..
T Consensus 73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999967776666665555443 35567776668744
No 98
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.81 E-value=9.9e-05 Score=63.75 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=77.4
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-ccc-----cCCHHHHHhccc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IPV-----MSDLTMVLGSIS 102 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v~v-----~~dl~~~l~~~~ 102 (220)
+.+||+|.|. |.+|+.+++.+.+ .+++++++.|+ +..|-|..++.......+ +.- +-+.++++.
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~-~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~--- 104 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHE-AGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE--- 104 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence 4589999996 9999999998876 49999999995 345667666553211111 111 123455555
Q ss_pred cCCCccEEEEccCchhHH-HHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650 103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (220)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~ 167 (220)
.++||+|.++.++..- +++. +-...+|+|-- .++++..+.| ++ -.+++.|.|..
T Consensus 105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~--rGi~~~PD~~a 161 (227)
T cd01076 105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HE--RGVLVVPDILA 161 (227)
T ss_pred --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HH--CCCEEEChHHh
Confidence 3899999999777663 4444 33589999876 4665544444 34 36666677654
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.80 E-value=2.5e-05 Score=61.88 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=52.4
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
...+||+|+|+ ||+|..+.+++.+ .++++++++.+.... +.+.... +-..+.++++++. ++|+++
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~-ag~~v~~v~srs~~sa~~a~~~~------~~~~~~~~~~~~~------~aDlv~ 73 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALAR-AGHEVVGVYSRSPASAERAAAFI------GAGAILDLEEILR------DADLVF 73 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHH-TTSEEEEESSCHH-HHHHHHC--------TT-----TTGGGC------C-SEEE
T ss_pred CCccEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCccccccccccc------ccccccccccccc------cCCEEE
Confidence 56799999998 9999999999876 489999988753211 1122221 2122446777765 799988
Q ss_pred EccCchhHHHHH-HHHHHC----CCcEEEeCCCCCH
Q 027650 112 DFTDASTVYDNV-KQATAF----GMRSVVYVPHIQL 142 (220)
Q Consensus 112 DfT~p~~~~~~~-~~al~~----G~~vVigTtG~~~ 142 (220)
.|.|+...+.+ ...... .=.+|+=|.|-..
T Consensus 74 -iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 74 -IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp -E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred -EEechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 67777775544 444433 1347778887543
No 100
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.79 E-value=7.2e-05 Score=68.13 Aligned_cols=98 Identities=26% Similarity=0.219 Sum_probs=65.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhc------CCCCCCcccc--CC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCD------MEQPLEIPVM--SD 93 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~g------~~~~~gv~v~--~d 93 (220)
++||+|+|. ||+||.+.|.+.+.+++|+|++=|.. -.|+--+++.- .+ ...+.++ .+
T Consensus 2 ~~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~-g~~I~v~~~~d 79 (331)
T PRK15425 2 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVN-GKKIRVTAERD 79 (331)
T ss_pred ceEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEEC-CeEEEEEEcCC
Confidence 379999996 99999999998878899999998721 01221111100 00 0123333 25
Q ss_pred HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
++++--. +.++|+||++|-.....+.+...+++|...|+=+
T Consensus 80 p~~~~w~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (331)
T PRK15425 80 PANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120 (331)
T ss_pred hhhCccc---ccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence 6665431 1379999988888888899999999997777544
No 101
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.78 E-value=0.00015 Score=64.08 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=72.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
+||+++|+ |+||..+++.+.+.. ..++. +++++. ..+..+.. .+|+.++++.++++. ++|+||-
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~~---~~g~~~~~~~~e~~~------~aDiIiL 69 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNASD---KYGITITTNNNEVAN------SADILIL 69 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHHH---hcCcEEeCCcHHHHh------hCCEEEE
Confidence 58999997 999999999987642 22444 456532 22333321 246666778888775 7899997
Q ss_pred ccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650 113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS 169 (220)
Q Consensus 113 fT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv 169 (220)
+..|....+.+... ++.+.-+|.=-.|.+-++++++- . ...+++ .-||...-+
T Consensus 70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l---~-~~~~vvR~MPN~~~~v 126 (272)
T PRK12491 70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF---D-RKLKVIRVMPNTPVLV 126 (272)
T ss_pred EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc---C-CCCcEEEECCChHHHH
Confidence 88887777766544 33344444444589887655433 2 123444 338866544
No 102
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.74 E-value=0.00025 Score=64.41 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=84.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--C-----CC-cchhhhhcCCCCCCccccCCHHHHHhccccCCC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--S-----VG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA 106 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~-----~g-~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~ 106 (220)
|+||+|+|+ |..|..++..+.+.- .++. .+.++ . .. ++..-+.|..-+.++..++|++++++ +
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng-~~V~-lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~ 71 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNG-HEVR-LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------G 71 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcC-CeeE-EEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------c
Confidence 579999997 999999999887653 2222 23221 0 00 11111223323456777999999996 7
Q ss_pred ccEEEEccCchhH-HHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhh----cCceEEEcCCCcHHHH
Q 027650 107 RAVVIDFTDASTV-YDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI 170 (220)
Q Consensus 107 ~DVVIDfT~p~~~-~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~----~~v~vviapNfS~Gv~ 170 (220)
+|+|+ +..|... .+.++. .++.+..+|+.+-|+.++....+.+..++ .-+.++.-|||+--+.
T Consensus 72 ad~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa 142 (329)
T COG0240 72 ADIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA 142 (329)
T ss_pred CCEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence 99988 5655544 444443 55788999998889988777777777765 1255566699998884
No 103
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=97.73 E-value=9.6e-05 Score=69.48 Aligned_cols=99 Identities=23% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c-----CCCCCCcccc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D-----MEQPLEIPVM 91 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~--g-----~~~~~gv~v~ 91 (220)
+++||+|+|. ||+||.+.|.+.+. +++|+|++=|.. -.|+--+++. . .+ ...+.++
T Consensus 74 ~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~-Gk~I~V~ 151 (442)
T PLN02237 74 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVD-GKPIKVV 151 (442)
T ss_pred ceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEEC-CEEEEEE
Confidence 4599999996 99999999987755 689999987621 0121111110 0 00 0112332
Q ss_pred C--CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 92 S--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 92 ~--dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
. |+.++-. .+.++|+||++|-.....+.+...++.|...|+=+
T Consensus 152 ~~~dp~~l~W---~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS 196 (442)
T PLN02237 152 SNRDPLKLPW---AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 196 (442)
T ss_pred EcCCchhCCh---hhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence 2 3334322 01379999988888888899999999997777644
No 104
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.73 E-value=0.00036 Score=60.97 Aligned_cols=94 Identities=7% Similarity=0.046 Sum_probs=61.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|||+++|+ |.||..+++.+.+.... ++.+ ++++. . ..++....+.+++.. ++|+||-
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~--~----------~~~~~~~~~~~~~~~------~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYY-HTPSK--K----------NTPFVYLQSNEELAK------TCDIIVL 63 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEE-ECCCh--h----------cCCeEEeCChHHHHH------hCCEEEE
Confidence 69999997 99999999999865322 3433 44321 0 112334556667664 7899998
Q ss_pred ccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHH
Q 027650 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALS 149 (220)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~ 149 (220)
++.|....+.+..... .+..+|+=..|.+.++.+++.
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~ 102 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV 102 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence 8888887776665442 244566656688877666553
No 105
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.73 E-value=7.8e-05 Score=68.04 Aligned_cols=98 Identities=22% Similarity=0.224 Sum_probs=64.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCcccc-
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~g~l------~g~~~~~gv~v~- 91 (220)
|+||||+|+ ||+||.+.|.+.+. ++++|+++=|.. ..|+--+++ +-.+ ...+.++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH 78 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence 689999998 99999999998764 589999876520 011110110 0010 1123333
Q ss_pred -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
.+++++-.. +.++|+|+++|......+.+..++++|...|+=+
T Consensus 79 ~~~p~~~~w~---~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS 122 (336)
T PRK13535 79 ERDIASLPWR---ELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS 122 (336)
T ss_pred cCCcccCccc---ccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence 255555331 1389999988888888999999999997776544
No 106
>PLN02256 arogenate dehydrogenase
Probab=97.72 E-value=0.00057 Score=61.46 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=72.3
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
+..++||+|+|+ |.||+.+++.+.+. +.++.+ +++... .+.. ...|+..+++.++++. .++|+||
T Consensus 33 ~~~~~kI~IIG~-G~mG~slA~~L~~~-G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVi 97 (304)
T PLN02256 33 KSRKLKIGIVGF-GNFGQFLAKTFVKQ-GHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVL 97 (304)
T ss_pred cCCCCEEEEEee-CHHHHHHHHHHHhC-CCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEE
Confidence 346689999996 99999999998764 678875 554321 1111 1345566788888764 2689999
Q ss_pred EccCchhHHHHHHHH-H---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650 112 DFTDASTVYDNVKQA-T---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (220)
Q Consensus 112 DfT~p~~~~~~~~~a-l---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~G 168 (220)
.+++|....+.+... . +.+ .+|+-.......-.+.+++.... +.+++ .-|||+.-
T Consensus 98 lavp~~~~~~vl~~l~~~~l~~~-~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e 157 (304)
T PLN02256 98 LCTSILSTEAVLRSLPLQRLKRS-TLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPE 157 (304)
T ss_pred EecCHHHHHHHHHhhhhhccCCC-CEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCC
Confidence 888887777766654 2 223 35544433323334445544321 34444 23666543
No 107
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00052 Score=63.33 Aligned_cols=129 Identities=17% Similarity=0.135 Sum_probs=77.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC--CCcch-----------hhhhcCCCCCCccccCCH
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS--VGEDI-----------GMVCDMEQPLEIPVMSDL 94 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~~--~g~d~-----------g~l~g~~~~~gv~v~~dl 94 (220)
.++||+|+|+ |.+|.+++..+...- +.++. .+.++. .+++. .-+.|..-+.++.+++|+
T Consensus 10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~-lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl 87 (365)
T PTZ00345 10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVR-MWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL 87 (365)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE-EEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence 4579999997 999999999988652 13332 233321 11111 112232223356668899
Q ss_pred HHHHhccccCCCccEEEEccCchhHHHHHHHHHH-----CCCcEEEeCCCCCHHHH--HHHHHHhhh---cCceEEEcCC
Q 027650 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCDK---ASMGCLIAPT 164 (220)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-----~G~~vVigTtG~~~e~~--~~L~~aA~~---~~v~vviapN 164 (220)
+++++ ++|+||-..+|....+.+..... .+..+|+-+-|++.++. ..+.+..++ ..+.++.-||
T Consensus 88 ~eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs 161 (365)
T PTZ00345 88 KEAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGAN 161 (365)
T ss_pred HHHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCC
Confidence 98886 79988866666666666655433 34456666778865442 233333332 3455567799
Q ss_pred CcHHHH
Q 027650 165 LSIGSI 170 (220)
Q Consensus 165 fS~Gv~ 170 (220)
|+--+.
T Consensus 162 ~A~Eva 167 (365)
T PTZ00345 162 VANDVA 167 (365)
T ss_pred HHHHHH
Confidence 998884
No 108
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.71 E-value=0.0001 Score=67.36 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=66.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCcccc--CC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVM--SD 93 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~--~d 93 (220)
++||+|+|. ||+||.+.|++.+.+++|+|++-|.. -.|+--+++. + .+ ...+.++ .|
T Consensus 2 ~~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~-g~~I~v~~~~d 79 (343)
T PRK07729 2 KTKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKKIRLLNNRD 79 (343)
T ss_pred ceEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEEcCC
Confidence 479999997 99999999998877899999997621 0122111110 0 00 1123333 36
Q ss_pred HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
++++-.. +.++|+|+++|......+.+...++.|...|+=+
T Consensus 80 p~~~~W~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (343)
T PRK07729 80 PKELPWT---DLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT 120 (343)
T ss_pred hhhCccc---ccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence 6665431 1379999988888888999999999997777644
No 109
>PLN02712 arogenate dehydrogenase
Probab=97.69 E-value=0.00053 Score=67.85 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=75.4
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
+.++||+|+|+ |+||+.+++.+.+. +++|++ +|+... . +.+ ...|+..+.+++++.. ..+|+||.
T Consensus 50 ~~~~kIgIIG~-G~mG~slA~~L~~~-G~~V~~-~dr~~~-~---~~A---~~~Gv~~~~d~~e~~~-----~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIGF-GNYGQFLAKTLISQ-GHTVLA-HSRSDH-S---LAA---RSLGVSFFLDPHDLCE-----RHPDVILL 114 (667)
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-EeCCHH-H---HHH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence 55689999996 99999999998865 688866 554311 1 111 1346667788888764 26899997
Q ss_pred ccCchhHHHHHHHHH----HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650 113 FTDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS 169 (220)
Q Consensus 113 fT~p~~~~~~~~~al----~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv 169 (220)
++++....+.+.... +.| .+|+-+......-.+.+.+...+ +.+++ .-|+|+...
T Consensus 115 avP~~~~~~vl~~l~~~~l~~g-~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~ 174 (667)
T PLN02712 115 CTSIISTENVLKSLPLQRLKRN-TLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQS 174 (667)
T ss_pred cCCHHHHHHHHHhhhhhcCCCC-eEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCcc
Confidence 888777666665442 223 35655544444334445554432 34444 448886663
No 110
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.69 E-value=8.9e-05 Score=67.80 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=75.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC-------CcEEEEEEecCC--CCcch-----------hhhhcCCCCCCccccCCHHH
Q 027650 37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHS--VGEDI-----------GMVCDMEQPLEIPVMSDLTM 96 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~--~g~d~-----------g~l~g~~~~~gv~v~~dl~~ 96 (220)
||+|+|+ |++|..++..+...- +.++.- +.++. .+... ..+.|..-+.++.+++|+++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE 78 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence 6999997 999999999887632 133332 32210 01111 11222211234567889999
Q ss_pred HHhccccCCCccEEEEccCchhHHHHHHH---HHHCCCcEEEeCCCCCHH--HHHHHHHHhhh---cCceEEEcCCCcHH
Q 027650 97 VLGSISQSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLE--TVSALSAFCDK---ASMGCLIAPTLSIG 168 (220)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~---al~~G~~vVigTtG~~~e--~~~~L~~aA~~---~~v~vviapNfS~G 168 (220)
++. ++|++|-..++....+.+.. .++.+.++|+-+-|++.+ ....+.+..++ ..+.++.-|||+..
T Consensus 79 al~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~E 152 (342)
T TIGR03376 79 AAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANE 152 (342)
T ss_pred HHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHH
Confidence 986 79988855555554444443 455677788877798765 44444443332 34555677999887
Q ss_pred HH
Q 027650 169 SI 170 (220)
Q Consensus 169 v~ 170 (220)
+.
T Consensus 153 va 154 (342)
T TIGR03376 153 VA 154 (342)
T ss_pred HH
Confidence 73
No 111
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.66 E-value=0.00051 Score=61.38 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
..|||+|+|+ |.||+.+++.+... +.++. +++++. ..++++++. ++|+||-+
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~-G~~V~-~~~r~~-------------------~~~~~~~~~------~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASAN-GHRVR-VWSRRS-------------------GLSLAAVLA------DADVIVSA 54 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHC-CCEEE-EEeCCC-------------------CCCHHHHHh------cCCEEEEE
Confidence 3479999996 99999999998764 67775 566531 135666665 79998844
Q ss_pred cCchhHHHHHHHHH----HCCCcEEEeCCCCCHHHHHHHHHHhhh--cCceEE--EcCCCcHH
Q 027650 114 TDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAPTLSIG 168 (220)
Q Consensus 114 T~p~~~~~~~~~al----~~G~~vVigTtG~~~e~~~~L~~aA~~--~~v~vv--iapNfS~G 168 (220)
.+...+.+.+.... ..++-+|..++|++++....+.+..+. .+.|++ ..|+++.-
T Consensus 55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~e 117 (308)
T PRK14619 55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKE 117 (308)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHH
Confidence 44433334443332 335556666667765544433332221 123554 66776643
No 112
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.66 E-value=0.00017 Score=60.80 Aligned_cols=91 Identities=24% Similarity=0.400 Sum_probs=67.1
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHH-HhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCC
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA 106 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~--~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~ 106 (220)
..+|.+|+|+|+ |++|++++..- ....++++++++|.+ ..|..+ .+++++ ++++..+.+ .+
T Consensus 81 ~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~---------~~v~V~~~d~le~~v~~----~d 146 (211)
T COG2344 81 QDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI---------GDVPVYDLDDLEKFVKK----ND 146 (211)
T ss_pred CCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc---------CCeeeechHHHHHHHHh----cC
Confidence 356889999998 99999998754 447789999999953 333332 246664 578888774 57
Q ss_pred ccEEEEccCchhH-HHHHHHHHHCCCcEEEeC
Q 027650 107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 107 ~DVVIDfT~p~~~-~~~~~~al~~G~~vVigT 137 (220)
.|+.| .|.|..+ -+.+....++|+.-|.--
T Consensus 147 v~iai-LtVPa~~AQ~vad~Lv~aGVkGIlNF 177 (211)
T COG2344 147 VEIAI-LTVPAEHAQEVADRLVKAGVKGILNF 177 (211)
T ss_pred ccEEE-EEccHHHHHHHHHHHHHcCCceEEec
Confidence 88888 5655555 577789999998877653
No 113
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.66 E-value=9.6e-05 Score=67.46 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=64.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~-- 91 (220)
|+||+|+|. ||+||.+.|.+.+. +++|+|++-|.. -.|+--+++. + .+ ...+.++
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVN-GKTIKCVSD 78 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEEC-CEEEEEEEc
Confidence 789999996 99999999998766 689999998731 0122111110 0 00 1123333
Q ss_pred CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
.|++++--. +.++|+|+++|......+.+...++.|...|+=+
T Consensus 79 ~dp~~~~W~---~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 79 RNPLNLPWK---EWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CCcccCChh---hcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 234554321 1379999988888888889999999997776543
No 114
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.64 E-value=0.00013 Score=67.86 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcch-------hhhhcCCCCCCcccc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDI-------GMVCDMEQPLEIPVM 91 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~-------g~l~g~~~~~gv~v~ 91 (220)
+++||+|+|+ ||+||.+.|.+.+. |.++|+++=|.. ..|+-- +..+-.+ ...+.++
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~ 136 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVV 136 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEE
Confidence 3489999998 99999999998866 789999876521 001100 1101010 1123343
Q ss_pred --CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 92 --~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
.|++++-.. +.++|+||++|-.....+.+...+++|...|+=+
T Consensus 137 ~~~dp~~~~w~---~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 137 SDRNPLNLPWG---ELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred EcCCccccccc---ccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 245555331 1379999999988888899999999997777544
No 115
>PLN02712 arogenate dehydrogenase
Probab=97.63 E-value=0.001 Score=65.94 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=75.4
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
..++||+|+|+ |+||+.+++.+.+ .+.+|+ ++|++.. ..... ..|+..+.++++++. ..+|+||-
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~-~G~~V~-~~dr~~~---~~~a~----~~Gv~~~~~~~el~~-----~~aDvVIL 431 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVK-QGHTVL-AYSRSDY---SDEAQ----KLGVSYFSDADDLCE-----EHPEVILL 431 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHH-CcCEEE-EEECChH---HHHHH----HcCCeEeCCHHHHHh-----cCCCEEEE
Confidence 45689999996 9999999999876 467877 5565421 11111 345556788888775 25899997
Q ss_pred ccCchhHHHHHHHHHH--C-CCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650 113 FTDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS 169 (220)
Q Consensus 113 fT~p~~~~~~~~~al~--~-G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv 169 (220)
++++....+.+..... . .-.+|+-.+.-...-.+.+++... .+..++ ..|+|....
T Consensus 432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~ 491 (667)
T PLN02712 432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPES 491 (667)
T ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccc
Confidence 7777766666654432 1 124565554333333445555433 345566 668877553
No 116
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=97.60 E-value=0.0003 Score=64.66 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=29.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~ 69 (220)
++||||+|. ||+||.+.|++.+. +++|+|++-|+
T Consensus 3 ~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 3 PIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred ceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 479999997 99999999998764 68999999883
No 117
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.58 E-value=0.00094 Score=59.05 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchhH
Q 027650 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV 119 (220)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~ 119 (220)
++|. |.||..+++.+.+. +.++. ++|++. .....+. ..|+...+++.+++. ++|+||-+.++...
T Consensus 1 ~IGl-G~mG~~mA~~L~~~-G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKA-GHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH 65 (288)
T ss_pred CCcc-cHhHHHHHHHHHhC-CCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence 4685 99999999998764 67765 567642 2233332 245667788888886 79999865554343
Q ss_pred -HHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650 120 -YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (220)
Q Consensus 120 -~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap 163 (220)
.+.+ ...+..|. +||-+++.+++..+++.+.+++.|+..+=+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~-~vid~st~~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGS-LLIDCSTIDPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred HHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence 3333 12233443 5556778889999999999988888877665
No 118
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.53 E-value=0.00074 Score=57.08 Aligned_cols=121 Identities=18% Similarity=0.285 Sum_probs=73.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCCHHHHHhccccCCCccEEEEc
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
|+|+|++|++|+.+++.+.. +++++.+++.+.. ......+- ..|+.+ ++|.+.+...+ .++|+|+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence 78999999999999999988 8999999886421 11122221 123222 33444432211 389999866
Q ss_pred cC---ch---hHHHHHHHHHHCCCcEEEeCC-C--C------C-H----HHHHHHHHHhhhcCceEE-EcCCCcH
Q 027650 114 TD---AS---TVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCL-IAPTLSI 167 (220)
Q Consensus 114 T~---p~---~~~~~~~~al~~G~~vVigTt-G--~------~-~----e~~~~L~~aA~~~~v~vv-iapNfS~ 167 (220)
+. +. .....+.+|.++|+..++=.. + . . . ++...++++.++.+++.. +.|+|=.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~~g~f~ 146 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIRPGFFM 146 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEEE-EEH
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceeccccchh
Confidence 65 22 334667889999998887332 1 1 1 0 233567888888778765 4455433
No 119
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.51 E-value=0.00032 Score=65.70 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=63.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhcCCC------CCCcccc--C
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCDMEQ------PLEIPVM--S 92 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~l~g~~~------~~gv~v~--~ 92 (220)
|+||+|+|. ||+||.+.|.+...++++++++-|+.. .|+--+++.-..+ ...+.++ .
T Consensus 85 ~~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 579999996 999999999987778999999887411 1211111100000 0112232 2
Q ss_pred CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCC-cEEEeCC
Q 027650 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP 138 (220)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTt 138 (220)
+++++-.. +.++|+|+++|-.....+.+...++.|. .|||-.|
T Consensus 164 dp~~~~w~---~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 164 DPAEIPWG---DFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred CcccCccc---ccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 45554321 1269999988877777888888899985 5565544
No 120
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.51 E-value=0.00046 Score=61.58 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=83.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc--EEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA--VVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D--VVI 111 (220)
..+|.|+|. +-|+....++... |++||+|+...-. ++..+++ ..+|||.|...|++-+ ++| +|+
T Consensus 4 pksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVv 70 (361)
T COG4693 4 PKSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVV 70 (361)
T ss_pred CceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEE
Confidence 348999995 9999998888776 8999999987521 2334555 3789999999999876 555 343
Q ss_pred Ec-cCc-hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650 112 DF-TDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (220)
Q Consensus 112 Df-T~p-~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi 161 (220)
.- |.. ..-.+.++..+++|++|+.+-|=. ++++.+|.++|++.|....+
T Consensus 71 Vrsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~y~v 121 (361)
T COG4693 71 VRSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV 121 (361)
T ss_pred EeeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcEEEE
Confidence 33 322 233577899999999999987744 56788888888887777665
No 121
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.49 E-value=0.0012 Score=55.76 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
|||+|+||+|+.|+++++.+.. .+.|+++++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~-RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALK-RGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHh-CCCeeEEEEeC
Confidence 6999999999999999998875 69999999975
No 122
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.44 E-value=0.0015 Score=62.44 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=69.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-----------hcCC-CCCC-ccccCCHHHHHhcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-----------CDME-QPLE-IPVMSDLTMVLGSI 101 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~l-----------~g~~-~~~g-v~v~~dl~~~l~~~ 101 (220)
+||+|+|+ |.||..++..+... +++|. ++|++... +.+.+. .+.. ...+ +.+.+|+++++.
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~-G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-- 79 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLA-GIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-- 79 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence 58999997 99999999988764 78775 57753211 011100 0000 0112 566788988875
Q ss_pred ccCCCccEEEEccCchhH-H----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 102 SQSKARAVVIDFTDASTV-Y----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
++|+||...+++.. . ..+...+..+.-+.+.|.|++..+ |.+.+.+.+.-++..||
T Consensus 80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~ 140 (495)
T PRK07531 80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPY 140 (495)
T ss_pred ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecC
Confidence 79999976655532 2 223333444554555566888654 45555555566666664
No 123
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.43 E-value=0.0011 Score=57.01 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=74.4
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCC-CCCCcccc-----CCHHHHHhccc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSIS 102 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~-~~~gv~v~-----~dl~~~l~~~~ 102 (220)
..+||+|.|. |++|+.+++.+.+. +..+|++.|. +. |-|..++.... ...++..+ .+.++++.
T Consensus 22 ~g~~vaIqGf-GnVG~~~a~~L~~~-G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--- 95 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEE-GGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG--- 95 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee---
Confidence 3479999996 99999999998864 8999999995 23 55554443210 11122222 13355554
Q ss_pred cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650 103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (220)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~ 167 (220)
.++||+|.++..+.. +...+.+.+..+|+|.- .++++..+.| +++ .+++.|.+..
T Consensus 96 --~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~--Gi~v~Pd~~~ 152 (217)
T cd05211 96 --LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HER--GIVVAPDIVA 152 (217)
T ss_pred --ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence 489999988876644 22334467799999876 3566433333 343 4777777554
No 124
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.41 E-value=0.0016 Score=57.85 Aligned_cols=111 Identities=13% Similarity=0.153 Sum_probs=64.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCCcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA 108 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D 108 (220)
|||.|+|++|.+|+.+++.+.+. +.++.++..+.. ....+. ..++.+ .+++.+++. ++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al~------g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSFK------GVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHHC------CCC
Confidence 58999999999999999998864 789888875421 111111 112222 123455554 799
Q ss_pred EEEEccCch-------------hHHHHHHHHHHCCCc-EE-EeCCC-----CCH--HHHHHHHHHhhhcCceEE
Q 027650 109 VVIDFTDAS-------------TVYDNVKQATAFGMR-SV-VYVPH-----IQL--ETVSALSAFCDKASMGCL 160 (220)
Q Consensus 109 VVIDfT~p~-------------~~~~~~~~al~~G~~-vV-igTtG-----~~~--e~~~~L~~aA~~~~v~vv 160 (220)
+||.+.... .....+.+|.++|+. +| +++.| .++ +...+.+++.++.++++.
T Consensus 67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~t 140 (317)
T CHL00194 67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYT 140 (317)
T ss_pred EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeE
Confidence 999864321 113345677788864 43 23322 111 223445666677777765
No 125
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.38 E-value=0.00083 Score=56.17 Aligned_cols=123 Identities=13% Similarity=0.161 Sum_probs=67.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhcCC-CCCCccccCCHHHHHhcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDME-QPLEIPVMSDLTMVLGSI 101 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~g~l~g~~-~~~gv~v~~dl~~~l~~~ 101 (220)
|||+|+|. |++|-.++-.+++ .|++++| +|.+. .| ..+.+++... .......++|.++++.
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~-~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAE-KGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHH-TTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEECC-CcchHHHHHHHHh-CCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 79999996 9999999887765 5899987 45310 01 1112222100 0123456778888775
Q ss_pred ccCCCccEEEEccC-c------------hhHHHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHHhhh--cCceEEEcC
Q 027650 102 SQSKARAVVIDFTD-A------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDK--ASMGCLIAP 163 (220)
Q Consensus 102 ~~~~~~DVVIDfT~-p------------~~~~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~aA~~--~~v~vviap 163 (220)
++|++|.+-+ | ..+.+.+...++.|.-+|+.+| |.+++....+.+.... .+..+.++|
T Consensus 76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 6898885532 2 2234455666777888898887 7777655554443322 346788888
Q ss_pred CCcH
Q 027650 164 TLSI 167 (220)
Q Consensus 164 NfS~ 167 (220)
-|-.
T Consensus 152 Erl~ 155 (185)
T PF03721_consen 152 ERLR 155 (185)
T ss_dssp ----
T ss_pred CccC
Confidence 8654
No 126
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.00099 Score=58.45 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=56.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CC----cchhhhhc-CCCCCC----ccc-------c
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VG----EDIGMVCD-MEQPLE----IPV-------M 91 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g----~d~g~l~g-~~~~~g----v~v-------~ 91 (220)
|+++++|- ||||..+++.+.. .+.++|+ +|.+. .| ..+.++.. ++.+.- +|. .
T Consensus 1 M~iGmiGL-GrMG~n~v~rl~~-~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi 77 (300)
T COG1023 1 MQIGMIGL-GRMGANLVRRLLD-GGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI 77 (300)
T ss_pred Ccceeecc-chhhHHHHHHHHh-CCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence 58999995 9999999999876 4888886 55311 01 00111111 011100 111 1
Q ss_pred CCHHHHHhccccCCCccEEEEccC--chhHHHHHHHHHHCCCcEE-EeCCC
Q 027650 92 SDLTMVLGSISQSKARAVVIDFTD--ASTVYDNVKQATAFGMRSV-VYVPH 139 (220)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~--p~~~~~~~~~al~~G~~vV-igTtG 139 (220)
+++...| ..-|+|||--+ -.......+.+.++|++.+ +||.|
T Consensus 78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 2233333 25689999643 4455666777899999998 78874
No 127
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=97.37 E-value=0.00076 Score=59.38 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=58.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||.|.|+||- |+.+++.+.+. +.++++-+..+.....+....+..-..|..-..++.+.+.+ .++|+|||.|+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~-g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~----~~i~~VIDAtH 74 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQ-GIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKR----HSIDILVDATH 74 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhC-CCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHh----cCCCEEEEcCC
Confidence 58999999998 99999988764 68888876643311111111000000011112345555653 57999999999
Q ss_pred chhH--HH-HHHHHHHCCCcEE
Q 027650 116 ASTV--YD-NVKQATAFGMRSV 134 (220)
Q Consensus 116 p~~~--~~-~~~~al~~G~~vV 134 (220)
|-+. -+ ....|.+.|+|.+
T Consensus 75 PfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 75 PFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCcEE
Confidence 9765 24 4478888999987
No 128
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.37 E-value=0.0016 Score=61.53 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=78.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC--Cccc--------cCCHHHHHh
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL--EIPV--------MSDLTMVLG 99 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~--gv~v--------~~dl~~~l~ 99 (220)
..||+|.|. |++|+.+++.+.+ .+.+||++.|+ +..|-|..++....... .+.- +.+.++++.
T Consensus 232 g~rVaIqGf-GnVG~~~A~~L~~-~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~ 309 (445)
T PRK09414 232 GKRVVVSGS-GNVAIYAIEKAQQ-LGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS 309 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc
Confidence 479999997 9999999998876 58999999994 34577776554321110 1111 124455554
Q ss_pred ccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650 100 SISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTL 165 (220)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNf 165 (220)
.++||+|-++..+.. .+++....+.+..+|+|-- + ++++-.+.| +++ .+++.|.|
T Consensus 310 -----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~r--GI~~vPD~ 367 (445)
T PRK09414 310 -----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEA--GVLFAPGK 367 (445)
T ss_pred -----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHC--CcEEECch
Confidence 489999998876655 5777777778999999876 3 455543333 333 45555654
No 129
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.35 E-value=0.0042 Score=55.36 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=62.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
..||+|+|+ |.||..+++.+....- .++ -++|+.. .....+. ..|+ .+..++++++. ++|+||
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V-~~~dr~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVi 71 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEI-VGADRSA--ETRARAR----ELGLGDRVTTSAAEAVK------GADLVI 71 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEE-EEEECCH--HHHHHHH----hCCCCceecCCHHHHhc------CCCEEE
Confidence 368999996 9999999998876532 244 4667632 1111111 1222 23567777764 799999
Q ss_pred EccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 112 DFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 112 DfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
.++++....+.+... ++.|. +|+-..+...+..+.+.+... .++.++
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~~~-~~~~~v 121 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPHLP-EGVHFI 121 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHhCC-CCCeEE
Confidence 777766554444333 34444 444444455554444544332 234444
No 130
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.34 E-value=0.0029 Score=59.63 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=67.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||+|+|++|.||+.+++.+.+. +.++.+ ++++. ....++.. ..|+....++++++. ++|+||.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G~~V~v-~~r~~--~~~~~~a~---~~gv~~~~~~~e~~~------~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-GFEVIV-TGRDP--KKGKEVAK---ELGVEYANDNIDAAK------DADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-CCEEEE-EECCh--HHHHHHHH---HcCCeeccCHHHHhc------cCCEEEEecC
Confidence 58999986799999999998764 667654 45432 11112221 345566678887775 7899997777
Q ss_pred chhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650 116 ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (220)
Q Consensus 116 p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi 161 (220)
++...+.+..... .|. +|+-.+.......+.+.+.... +..++-
T Consensus 68 ~~~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~~~~~-~~~~V~ 114 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEEYAPE-GVEILP 114 (437)
T ss_pred HHHHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHHhcCC-CCEEEE
Confidence 7666655554443 333 4544444444555566655432 344443
No 131
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.34 E-value=0.00071 Score=53.62 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=64.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc----cccCCHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVV 110 (220)
..||+|+|+ |.||+.+++.+.+.. ..-+.+++++. ....++.. ..+. ..+.+.++++. ++|+|
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~Dvv 85 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELLA------EADLI 85 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhccc------cCCEE
Confidence 468999997 999999999998754 44555666532 11222221 1111 12456666654 79999
Q ss_pred EEccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 111 IDfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
|..+++..+ .......++.|.-++--.+. .... .+.+.+++.|+.++
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~-~~~~--~l~~~~~~~g~~~v 136 (155)
T cd01065 86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN-PLET--PLLKEARALGAKTI 136 (155)
T ss_pred EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC-CCCC--HHHHHHHHCCCcee
Confidence 977776553 11223445666655522221 1111 67777888777544
No 132
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.33 E-value=0.0025 Score=59.23 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=67.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------C----C--CCC-ccccCCHHHHHh
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E----Q--PLE-IPVMSDLTMVLG 99 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~--------~----~--~~g-v~v~~dl~~~l~ 99 (220)
|||+|+|. |+||..++..+.+ .+.++++ +|++. ..+..+. |. . . ..| +..++++++++.
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~-~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLAD-LGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHh-cCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 48999996 9999999998875 5788765 56421 1111111 00 0 0 012 456678888775
Q ss_pred ccccCCCccEEEEccC-ch---------hHHHH---HHHHHHCCCcEEEeCC---CCCHHHHHHHHHHh---h-hcCceE
Q 027650 100 SISQSKARAVVIDFTD-AS---------TVYDN---VKQATAFGMRSVVYVP---HIQLETVSALSAFC---D-KASMGC 159 (220)
Q Consensus 100 ~~~~~~~~DVVIDfT~-p~---------~~~~~---~~~al~~G~~vVigTt---G~~~e~~~~L~~aA---~-~~~v~v 159 (220)
++|+||.+.+ |. .+.+. +...++.|.-+|..+| |.+.+-...+.+.. + ....++
T Consensus 76 ------~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 76 ------DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred ------hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7998885543 21 12222 2333455665665444 33433322332210 0 112578
Q ss_pred EEcCCCcHHH
Q 027650 160 LIAPTLSIGS 169 (220)
Q Consensus 160 viapNfS~Gv 169 (220)
..+|.|..--
T Consensus 150 ~~~Pe~~~~G 159 (411)
T TIGR03026 150 AYNPEFLREG 159 (411)
T ss_pred EECCCcCCCC
Confidence 8888876543
No 133
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.30 E-value=0.0022 Score=58.30 Aligned_cols=127 Identities=11% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE-ecCC------CCcchhhhh-cCCCCCCccccCCHHHHHhccccCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-DSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v-d~~~------~g~d~g~l~-g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (220)
.|+||+|+|+ |.||..++..+.+.-. ++... ++.. .+.....+. +..-+.++.+++|+++++.
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~------ 76 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRGP--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN------ 76 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh------
Confidence 4689999997 9999999998876532 22222 2110 011100011 1100123456788888775
Q ss_pred CccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHH----HHHHHHhhhcCceEEEcCCCcHHH
Q 027650 106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 106 ~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~----~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
++|+||-++++..+.+.++.. +..+.++|+-+-|+..+.. +.|++........++.-|||.--+
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREV 147 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence 789988666665555544443 3445556655558864322 223332212224456669887744
No 134
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.29 E-value=0.002 Score=52.01 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=51.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCCH---HHHHhccccCCCccEE
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDL---TMVLGSISQSKARAVV 110 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~dl---~~~l~~~~~~~~~DVV 110 (220)
|+|.|++|.+|+.+++.+.+. +.++.+++.+.. ...+. .++.+ ..|. .+++. ++|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~~------~~~~~~~~d~~d~~~~~~al~------~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAEDS------PGVEIIQGDLFDPDSVKAALK------GADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHHC------TTEEEEESCTTCHHHHHHHHT------TSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hcccc------cccccceeeehhhhhhhhhhh------hcchh
Confidence 789999999999999999886 499999886531 11111 11111 2344 44453 89999
Q ss_pred EEccCc-----hhHHHHHHHHHHCCCcEE
Q 027650 111 IDFTDA-----STVYDNVKQATAFGMRSV 134 (220)
Q Consensus 111 IDfT~p-----~~~~~~~~~al~~G~~vV 134 (220)
|++..+ +.....+..+.++|++-+
T Consensus 65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp EECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhhhcccccccccccccccccccccc
Confidence 976542 222344455667786544
No 135
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.28 E-value=0.004 Score=59.38 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=71.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecC-------------CCCcchhhhhcCCCCCCccccCCHHHHHhc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~-------------~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~ 100 (220)
||||+|+|+ |++|-.++-.+.+. .+++++++ |.+ .......++...........++|+++++.
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~- 77 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA- 77 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence 689999996 99999999888765 36888875 521 01112223321000012456777877765
Q ss_pred cccCCCccEEEEcc-Cch--------------hH---HHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHHhhhcCceE
Q 027650 101 ISQSKARAVVIDFT-DAS--------------TV---YDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC 159 (220)
Q Consensus 101 ~~~~~~~DVVIDfT-~p~--------------~~---~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~aA~~~~v~v 159 (220)
++|++|.+- +|. .+ .+.+...++.|.-||+.+| |.+++-...|.+........+
T Consensus 78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v 152 (473)
T PLN02353 78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI 152 (473)
T ss_pred -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence 799887652 222 11 1223333456777888877 666655555554322123457
Q ss_pred EEcCCCc
Q 027650 160 LIAPTLS 166 (220)
Q Consensus 160 viapNfS 166 (220)
.++|-|-
T Consensus 153 ~~~PErl 159 (473)
T PLN02353 153 LSNPEFL 159 (473)
T ss_pred EECCCcc
Confidence 7777764
No 136
>PLN02522 ATP citrate (pro-S)-lyase
Probab=97.27 E-value=0.0014 Score=64.23 Aligned_cols=125 Identities=15% Similarity=0.201 Sum_probs=80.5
Q ss_pred CceEEEEcCCCHHHHHHHHHH-----HhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650 35 NIKVIINGAVKEIGRAAVIAV-----TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i-----~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (220)
..|-.++|- +. +.+-+.+ ...+.-.+++.+-+.. +.-..-+.|. ...++|||++.+|+.++ ..++|+
T Consensus 10 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~-~~~~iPVf~tv~eA~~~---~~~~~~ 81 (608)
T PLN02522 10 TTQALFYNY-KQ--LPVQRMLDFDFLCGRETPSVAGIINPGS-EGFQKLFFGQ-EEIAIPVHGSIEAACKA---HPTADV 81 (608)
T ss_pred CceeEEEcC-cH--HHHHhhhccceeccCCCCeeEEEEcCCC-CcceeEecCC-EeeCccccchHHHHHHh---CCCCcE
Confidence 346778874 21 2222222 2233345666665532 2111112343 25689999999999974 126899
Q ss_pred EEEccCchhHHHHH-HHHHHCCCcEEEe-CCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 110 VIDFTDASTVYDNV-KQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 110 VIDfT~p~~~~~~~-~~al~~G~~vVig-TtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
.|.|.+|..+++.+ +.|.+.|++.++- |.|+.+.+..+|.++++++|+. ++-|| ++|+
T Consensus 82 ~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIGPN-c~Gi 141 (608)
T PLN02522 82 FINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIGPA-TVGG 141 (608)
T ss_pred EEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EECCC-CCee
Confidence 99999988887655 5555569876554 5599888889999999998887 45577 5555
No 137
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.26 E-value=0.00039 Score=62.80 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=63.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
-+|+|+|+ |.+|+.+++.+....+++-+.++++.. ..+.++.. +...++ +..++++++++. ++|+||-
T Consensus 128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~ 198 (325)
T PRK08618 128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT 198 (325)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 48999997 999999999887778899999998742 12222221 001223 345789999885 7999995
Q ss_pred ccCchhHHHHHHHHHHCCCcEE-EeC
Q 027650 113 FTDASTVYDNVKQATAFGMRSV-VYV 137 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV-igT 137 (220)
+| |..+.-.- .+++.|.||. ||+
T Consensus 199 aT-~s~~p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VT-NAKTPVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred cc-CCCCcchH-HhcCCCcEEEecCC
Confidence 55 44444444 7889999985 554
No 138
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.24 E-value=0.0054 Score=58.78 Aligned_cols=119 Identities=10% Similarity=0.071 Sum_probs=71.5
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---ccccCCHHHHHhccccCCCccE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAV 109 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DV 109 (220)
..+.+|+++|. |.||+.+++.+..+ +++|+ ++|++. ....++.......| +..+.+++++...+ ..+|+
T Consensus 4 ~~~~~IG~IGL-G~MG~~mA~nL~~~-G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dv 75 (493)
T PLN02350 4 AALSRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRS 75 (493)
T ss_pred CCCCCEEEEee-HHHHHHHHHHHHhC-CCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCE
Confidence 45678999995 99999999999864 88776 677642 12223321000112 23577899887621 25998
Q ss_pred EEEcc-CchhHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 110 VIDFT-DASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 110 VIDfT-~p~~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
||-+= .++.+.+. +...++.|.-+|-++| .++++..++.+.+++.|+..+
T Consensus 76 Ii~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 76 VIILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred EEEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHcCCeEE
Confidence 88432 23333333 3444566754554444 445556677777777777755
No 139
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.23 E-value=0.0056 Score=58.33 Aligned_cols=117 Identities=13% Similarity=0.142 Sum_probs=71.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|.+|+|+|. |.||..+++.+... +++|. ++|++. ....++.......| +..+.+++++...+ .++|+||-
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIASR-GFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence 568999996 99999999999864 77755 577642 11222221100113 34578999988621 25897776
Q ss_pred ccC-chhHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 113 FTD-ASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 113 fT~-p~~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
+-+ ++.+.+. +...++.|.-+|-++++...+..++..+ .++.|+..+
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~-l~~~Gi~fl 123 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR-CEEKGILYL 123 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH-HHHcCCeEE
Confidence 634 3344333 3445677877887777776555555444 445566544
No 140
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.22 E-value=0.0027 Score=57.46 Aligned_cols=113 Identities=11% Similarity=0.110 Sum_probs=67.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
.||+|+|+ |+||+.+++.+... +++++...++.. .....+. ..|+.+. +.++++. ++|+|+-..+
T Consensus 4 kkIgiIG~-G~mG~AiA~~L~~s-G~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIGY-GSQGHAQALNLRDS-GLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP 68 (314)
T ss_pred CEEEEEeE-cHHHHHHHHHHHHC-CCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence 58999997 99999999999864 677655554421 2222221 2355544 5777765 7999997777
Q ss_pred chhHHHHH----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650 116 ASTVYDNV----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (220)
Q Consensus 116 p~~~~~~~----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~G 168 (220)
|+.....+ ...++.|. +|+=..|++-+..+ ..-. .+++|+ +.||...-
T Consensus 69 p~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~---~~~~-~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQ---IVPP-KDVDVVMVAPKGPGT 121 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhhcc---ccCC-CCCcEEEECCCCCcH
Confidence 77343322 22334453 55556688865533 2221 235565 66885543
No 141
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=97.22 E-value=0.0013 Score=59.96 Aligned_cols=97 Identities=25% Similarity=0.204 Sum_probs=61.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCCC------CC-Ccccc--C
Q 027650 37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDMEQ------PL-EIPVM--S 92 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~g~~~------~~-gv~v~--~ 92 (220)
||+|+|. ||+||.+.|++.+. +++++|++-|.. -.|+--+++.-.+. .. .+.++ .
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 7999996 99999999998876 589999998730 01221111100000 01 12222 2
Q ss_pred CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (220)
+++++-- ++.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 4444432 11279999988888888888999999997766543
No 142
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.20 E-value=0.00084 Score=60.43 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=61.5
Q ss_pred EecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc------CchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650 67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI 140 (220)
Q Consensus 67 vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~G~~vVigTtG~ 140 (220)
+|++..|++++++.+. ..|+|++++++++ . .++|++|.-. .|+.+.+.+..|+++|++||.|---+
T Consensus 1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~ 72 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF 72 (301)
T ss_dssp E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence 5777889999999985 3899999999999 3 4899888532 37788899999999999999975532
Q ss_pred CHHHHHHHHHHhhhcCceEE
Q 027650 141 QLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 141 ~~e~~~~L~~aA~~~~v~vv 160 (220)
..+..+|.++|+++|+.++
T Consensus 73 -L~ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 73 -LSDDPELAAAAKKNGVRII 91 (301)
T ss_dssp -HCCHHHHHCCHHCCT--EE
T ss_pred -hccCHHHHHHHHHcCCeEe
Confidence 3344789999999999888
No 143
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.17 E-value=0.0044 Score=54.56 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=57.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-c-ccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~-v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
|||+|+|+ |.||..+++.+.+. +.++. ++|++. .....+.. .|+ . ..++.+ .+. ++|+||.+
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~-g~~V~-~~d~~~--~~~~~a~~----~g~~~~~~~~~~-~~~------~aDlVila 64 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSL-GHTVY-GVSRRE--STCERAIE----RGLVDEASTDLS-LLK------DCDLVILA 64 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHC-CCEEE-EEECCH--HHHHHHHH----CCCcccccCCHh-Hhc------CCCEEEEc
Confidence 48999996 99999999998765 67765 456531 11222221 121 1 233443 443 79999977
Q ss_pred cCchhHHHHHHHHHHC--CCcEEEeCCCCCHHHHHHHHH
Q 027650 114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSA 150 (220)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTtG~~~e~~~~L~~ 150 (220)
+++....+.+...... .-.+|+-+.+...+..+.+.+
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~ 103 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK 103 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH
Confidence 7777766655544432 223554444555555444443
No 144
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.17 E-value=0.0062 Score=54.90 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=85.9
Q ss_pred ccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCH
Q 027650 15 ISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL 94 (220)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl 94 (220)
.++++...+.+..+..-+.++.||+-+|- |.||+.++..+... ++.|. ++|+.. ....++. ..|..+.+++
T Consensus 15 ~~~~~~~~~~~~~s~~~~~s~~~iGFIGL-G~MG~~M~~nLik~-G~kVt-V~dr~~--~k~~~f~----~~Ga~v~~sP 85 (327)
T KOG0409|consen 15 FSRRLVKASETAMSSRITPSKTRIGFIGL-GNMGSAMVSNLIKA-GYKVT-VYDRTK--DKCKEFQ----EAGARVANSP 85 (327)
T ss_pred hcccccccccccccccCCcccceeeEEee-ccchHHHHHHHHHc-CCEEE-EEeCcH--HHHHHHH----HhchhhhCCH
Confidence 34555554444434333446789999995 99999999999875 77776 577642 1112222 3477889999
Q ss_pred HHHHhccccCCCccEEEEc-cCchhHHHHHH------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650 95 TMVLGSISQSKARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (220)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDf-T~p~~~~~~~~------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap 163 (220)
.|+.+ ..||||-. +.|..+.+.+. ..++.|....|--+..+++...+|.+.++..+-..+=+|
T Consensus 86 aeVae------~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAP 155 (327)
T KOG0409|consen 86 AEVAE------DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAP 155 (327)
T ss_pred HHHHh------hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEecc
Confidence 99986 79988843 34444444332 223355555445556788888889888877666655433
No 145
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.15 E-value=0.0015 Score=58.35 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI 111 (220)
...||+|+|+ |+||+.+++.+... ++++. ++++.. .+..... ..+.. -++++++.+. ++|+||
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVI 214 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEE
Confidence 3458999997 99999999999865 67765 556532 1222111 11222 1456677775 799999
Q ss_pred EccCchhHH-HHHHHHHHCCCcEE-Ee-CCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 112 DFTDASTVY-DNVKQATAFGMRSV-VY-VPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 112 DfT~p~~~~-~~~~~al~~G~~vV-ig-TtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
. +.|.... +.....++.+.-+| ++ .||-++ + ++|++.|+..+++||
T Consensus 215 n-t~P~~ii~~~~l~~~k~~aliIDlas~Pg~td-----f-~~Ak~~G~~a~~~~g 263 (287)
T TIGR02853 215 N-TIPALVLTADVLSKLPKHAVIIDLASKPGGTD-----F-EYAKKRGIKALLAPG 263 (287)
T ss_pred E-CCChHHhCHHHHhcCCCCeEEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCC
Confidence 6 4454432 22333344443333 22 245554 4 678899999998886
No 146
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.09 E-value=0.0083 Score=53.75 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=76.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
+||+.+|. |.||.-+++.+... ++++. ++|++. ..+.+++ ...|.....++.++.. .+|+||-+=+
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~a-G~~v~-v~~r~~--~ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKA-GHEVT-VYNRTP--EKAAELL---AAAGATVAASPAEAAA------EADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHC-CCEEE-EEeCCh--hhhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence 48999995 99999999999874 77776 566642 1112222 1347777888877775 7999985433
Q ss_pred chhHHHHHHH----HHH---CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 116 ASTVYDNVKQ----ATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 116 p~~~~~~~~~----al~---~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
.....+.+.+ .++ .|.-+|- -+..+++...++.+.+++.|...+=+|=
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAPV 121 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAPV 121 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence 3333333332 232 4555554 4557788899999999999988886553
No 147
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.05 E-value=0.012 Score=51.69 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=51.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
|||+|+|+ |.||..+++.+.+.. ..++.+ +|++. ....... ..|+. ...+++++. ++|+||.+
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~-~d~~~--~~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vila 65 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYG-YDHNE--LHLKKAL----ELGLVDEIVSFEELK-------KCDVIFLA 65 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEE-EcCCH--HHHHHHH----HCCCCcccCCHHHHh-------cCCEEEEe
Confidence 48999996 999999999987652 135544 56532 1112111 22322 244666643 58999978
Q ss_pred cCchhHHHHHHHHHH--CCCcEEEe
Q 027650 114 TDASTVYDNVKQATA--FGMRSVVY 136 (220)
Q Consensus 114 T~p~~~~~~~~~al~--~G~~vVig 136 (220)
++|....+.+..... .+. +|+-
T Consensus 66 vp~~~~~~~~~~l~~l~~~~-iv~d 89 (275)
T PRK08507 66 IPVDAIIEILPKLLDIKENT-TIID 89 (275)
T ss_pred CcHHHHHHHHHHHhccCCCC-EEEE
Confidence 888777776655433 343 5554
No 148
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0026 Score=57.67 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc------CchhHHH
Q 027650 48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD 121 (220)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~ 121 (220)
|+...-++...+.+++++++|+...|.+.....+. ...++|+.++.+++++. ..|++|.-. .++.+.+
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~ 88 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE 88 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence 55555555555569999999987767444433332 36799999999999973 458777653 3567778
Q ss_pred HHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 122 ~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
.+..|+++|++||.|---+ -++...+.++|++.|+.+.
T Consensus 89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~rl~ 126 (339)
T COG3367 89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGVRLD 126 (339)
T ss_pred HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCCeeE
Confidence 9999999999999876555 5667889999999888555
No 149
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.02 E-value=0.0094 Score=52.51 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCCCC------------CccccCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQPL------------EIPVMSD 93 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l---~g~~~~~------------gv~v~~d 93 (220)
...||+|.|. |++|+..++.+.+ .+..+|++.|+ +..|-|..++ ....... +.. +-+
T Consensus 37 ~g~~vaIqGf-GnVG~~~a~~L~e-~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~ 113 (254)
T cd05313 37 KGKRVAISGS-GNVAQYAAEKLLE-LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFE 113 (254)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeC
Confidence 3469999996 9999999998876 58999999994 3456665544 1110000 111 225
Q ss_pred HHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
.++++. .++||+|=+..-... .+++....+.+..+|+|-- + ++++-.+.| +++ .+++.|.|.
T Consensus 114 ~~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L----~~r--GI~vvPD~l 178 (254)
T cd05313 114 GKKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF----RQA--GVLFAPGKA 178 (254)
T ss_pred Ccchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH----HHC--CcEEECchh
Confidence 566665 489999977655444 6777777788999999876 3 455332222 343 455556543
No 150
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.98 E-value=0.0025 Score=56.36 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=49.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT- 114 (220)
|||.|+|++|.+|+.+.+.+.+ .+.++++. ++.. .++.-.+.+.+.+.. .+||+||.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--------------~dl~d~~~~~~~~~~----~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--------------LDLTDPEAVAKLLEA----FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--------------S-TTSHHHHHHHHHH----H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--------------cCCCCHHHHHHHHHH----hCCCeEeccce
Confidence 7999999999999999998876 67888876 3321 111112234455543 3799999874
Q ss_pred ---------Cchh--------HHHHHHHHHHCCCcEE
Q 027650 115 ---------DAST--------VYDNVKQATAFGMRSV 134 (220)
Q Consensus 115 ---------~p~~--------~~~~~~~al~~G~~vV 134 (220)
.|+. ....++.|.+.|.++|
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li 97 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI 97 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence 2222 2234577788999987
No 151
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.97 E-value=0.0059 Score=54.69 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=29.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|+||.|.|++|.+|+.+++.+.+..+.+++++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 679999999999999999999876678988864
No 152
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.94 E-value=0.016 Score=53.65 Aligned_cols=71 Identities=20% Similarity=0.101 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
...||+|+|.+|.||+.+++.+.+..+.++.| +|+... ...++++++. ++|+||-+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v~------~aDlVila 58 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLLQ------RADVLIFS 58 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHhc------CCCEEEEe
Confidence 45799999977999999999998655788775 565210 0224445543 57777766
Q ss_pred cCchhHHHHHHHHHH
Q 027650 114 TDASTVYDNVKQATA 128 (220)
Q Consensus 114 T~p~~~~~~~~~al~ 128 (220)
+++....+.+.....
T Consensus 59 vPv~~~~~~l~~l~~ 73 (370)
T PRK08818 59 APIRHTAALIEEYVA 73 (370)
T ss_pred CCHHHHHHHHHHHhh
Confidence 666666666655443
No 153
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.93 E-value=0.0032 Score=55.97 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=26.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.||+|+|+ |.||..++..+.. .+++++. +|+
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~ 35 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDV 35 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EEC
Confidence 468999997 9999999998876 4778765 564
No 154
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.93 E-value=0.011 Score=56.29 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=67.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
+|+++|. |.||+.+++.+... +++|+ ++|++. ....++... ....++..+.+++++...+ .++|+||-+-+
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~-G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADH-GFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhc-CCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence 4899996 99999999999875 77765 567532 222333211 0001245577888776421 36898885555
Q ss_pred c-hhHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 116 A-STVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 116 p-~~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
+ ..+.+. +...++.|.-+|-++|....+..++.++ .++.|+..+
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~fv 120 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGILFV 120 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCEEE
Confidence 5 233333 3344556766666666655555455444 455567654
No 155
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.92 E-value=0.013 Score=55.61 Aligned_cols=119 Identities=10% Similarity=0.096 Sum_probs=68.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhc-----------C-------------CC-CCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCD-----------M-------------EQ-PLE 87 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g-----------~-------------~~-~~g 87 (220)
.+.||+|.|+||-+|+..++.+.++|+ ++++++..... ...+.. + .. ..+
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~N----i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~ 131 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSN----VTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDK 131 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCC----HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCC
Confidence 357999999999999999999988766 99999876321 111110 0 00 001
Q ss_pred cccc---CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 88 IPVM---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 88 v~v~---~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
..++ +.+.++... .++|+||..-.--+-..-...|+++|+.|....-..=-.--+.|.++++++|+.++
T Consensus 132 ~~vl~G~egl~~la~~----~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il 203 (454)
T PLN02696 132 PEIIPGEEGIVEVARH----PEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL 203 (454)
T ss_pred cEEEECHHHHHHHHcC----CCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe
Confidence 2222 345555543 46898885433333344557889999998864321000011234555555554444
No 156
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.91 E-value=0.013 Score=53.32 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |-||+.++..+.. .+++++ ++|+
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~-aG~~V~-l~D~ 38 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALA-HGLDVV-AWDP 38 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeC
Confidence 358999997 9999999998876 488887 4665
No 157
>PLN02858 fructose-bisphosphate aldolase
Probab=96.91 E-value=0.013 Score=62.45 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.+.||+++|. |+||..+++.+.. .++++. ++|+.. .....+. ..|+...+++.++.. ++|+||-+
T Consensus 323 ~~~~IGfIGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~ 387 (1378)
T PLN02858 323 PVKRIGFIGL-GAMGFGMASHLLK-SNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM 387 (1378)
T ss_pred CCCeEEEECc-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence 3579999996 9999999999876 478775 567532 2223333 234555778888875 79998854
Q ss_pred cC-chhHHHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh--cCceEEEcC
Q 027650 114 TD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAP 163 (220)
Q Consensus 114 T~-p~~~~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~--~~v~vviap 163 (220)
-+ |..+.+.+ ...++.|. +||-.+..+++..+++.+.+++ .|+.++=+|
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 33 44444443 12234454 4455666678888888888777 788877666
No 158
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.88 E-value=0.0064 Score=52.35 Aligned_cols=98 Identities=24% Similarity=0.289 Sum_probs=65.0
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhc-CCcEEE--EEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCcc
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVA--GAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARA 108 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLv--g~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~D 108 (220)
+++.||+|+| +|++|.-+.--++.+ ..+|.- -.+|+...|- ...+ ++|++.+ +-++-+|... ...+.|
T Consensus 2 ~sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdgl--araa----rlgv~tt~egv~~ll~~p-~~~di~ 73 (310)
T COG4569 2 SSKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGL--ARAA----RLGVATTHEGVIGLLNMP-EFADID 73 (310)
T ss_pred CCcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHH--HHHH----hcCCcchhhHHHHHHhCC-CCCCcc
Confidence 5678999999 599998876555544 444443 3456644332 1111 4555543 2344444321 113566
Q ss_pred EEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~G~~vVigTt 138 (220)
.|+|.|..-.+.+++..+.+.|++.+-=||
T Consensus 74 lvfdatsa~~h~~~a~~~ae~gi~~idltp 103 (310)
T COG4569 74 LVFDATSAGAHVKNAAALAEAGIRLIDLTP 103 (310)
T ss_pred eEEeccccchhhcchHhHHhcCCceeecch
Confidence 999999999999999999999999997676
No 159
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.0076 Score=52.97 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.||+|+|+ |.||..++..+... +.+++. +|+
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~ 34 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDI 34 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeC
Confidence 458999997 99999999988765 777775 564
No 160
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.84 E-value=0.015 Score=45.87 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=62.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
||.|+|+ |++|..+++.+.. .++.=+.++|++.. -.++... ....+..|-+-.+.+.+.+.+ -.+++-|..-
T Consensus 1 ~VliiG~-GglGs~ia~~L~~-~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~~p~v~i~~~ 74 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLAR-SGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNE----LNPGVNVTAV 74 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHH----HCCCcEEEEE
Confidence 6899998 9999999999876 47765667886421 1122111 100001122222222333332 2445444221
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
......+.. ...-.+..+|+.++.- .+....|.++|++.++|++.+.+
T Consensus 75 ~~~~~~~~~-~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 75 PEGISEDNL-DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred eeecChhhH-HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcC
Confidence 111111111 2222466777766544 45567788888888888876544
No 161
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.84 E-value=0.0042 Score=55.56 Aligned_cols=115 Identities=15% Similarity=0.190 Sum_probs=69.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI 111 (220)
...||+|+|+ |++|+.+++.+... +.++.. +++.. ....... ..|... ++++.+.+. ++|+||
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~-Ga~V~v-~~r~~--~~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKAL-GANVTV-GARKS--AHLARIT----EMGLSPFHLSELAEEVG------KIDIIF 215 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHC-CCEEEE-EECCH--HHHHHHH----HcCCeeecHHHHHHHhC------CCCEEE
Confidence 3469999997 99999999998765 676654 55531 1111111 223222 346667664 799999
Q ss_pred EccCchhHHHHHHHHHHCCCcEE-EeC-CCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 112 DFTDASTVYDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vV-igT-tG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
..+++....+.....++.|.-+| ++. +|-++ + +.+++.|++.++.+|.--++
T Consensus 216 ~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 216 NTIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred ECCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence 76554433333333455554444 333 34433 2 36788999999988866544
No 162
>PLN02858 fructose-bisphosphate aldolase
Probab=96.84 E-value=0.018 Score=61.50 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=75.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
-.||+++|. |.||..+++.+.. .+++|. ++|+.. .....+. ..|+.+.+++.++.. ++|+||-+-
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~l 68 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVVL 68 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEEc
Confidence 358999996 9999999999886 478875 677642 2233333 346677889999885 789888543
Q ss_pred C-chhHHHHH---HHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcC--ceEEEcCC
Q 027650 115 D-ASTVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAPT 164 (220)
Q Consensus 115 ~-p~~~~~~~---~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~--v~vviapN 164 (220)
+ ++.+.+.+ .-.+ +.| .+|+-.+..+++...++.+.+++.| +..+=+|=
T Consensus 69 ~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPV 126 (1378)
T PLN02858 69 SHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYV 126 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccC
Confidence 3 33333333 1222 234 3666666777888889988888877 66554443
No 163
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.83 E-value=0.019 Score=49.78 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=63.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCC---HHHHHhccccCCC-ccEEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD---LTMVLGSISQSKA-RAVVI 111 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~d---l~~~l~~~~~~~~-~DVVI 111 (220)
||.|.|+||.+|+.+++.+.+ .+.++.+++.+..... ..+. ..+.. +.| +.+++.....-.. +|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~----~~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSA----GPNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcccc----CCCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 589999999999999999876 4788887765421100 0111 01111 233 4444420000014 78877
Q ss_pred EccCc-----hhHHHHHHHHHHCCCcEEEeCC--CC--CHHHHHHHHHHhhhc-CceEE-EcCC
Q 027650 112 DFTDA-----STVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL-IAPT 164 (220)
Q Consensus 112 DfT~p-----~~~~~~~~~al~~G~~vVigTt--G~--~~e~~~~L~~aA~~~-~v~vv-iapN 164 (220)
.++.+ ......+..|.++|+.-|+-++ +. .......++++.++. +++.. +-|+
T Consensus 73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 55432 2234556778889975443332 21 111223445555553 67654 4455
No 164
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.82 E-value=0.0024 Score=55.78 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=78.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC--ccccC----------CH-HH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE--IPVMS----------DL-TM 96 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g--v~v~~----------dl-~~ 96 (220)
-.||+|-|. |++|+..++.+.+. +..++++.|+ +..|-|..++..+.+..+ +..+. +- ++
T Consensus 32 g~~v~IqGf-G~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 32 GKRVAIQGF-GNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp TCEEEEEES-SHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 369999997 99999999999875 9999999884 334667666654211111 11111 22 26
Q ss_pred HHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
++. .++||+|=+..+... .+++...++.|.++|+|-- .++++..+ .-+++ .+++.|.|.
T Consensus 110 il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~r--GI~viPD~~ 171 (244)
T PF00208_consen 110 ILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRER--GILVIPDFL 171 (244)
T ss_dssp GGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHT--T-EEE-HHH
T ss_pred ccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHC--CCEEEcchh
Confidence 776 489999988877666 4677767899999999876 35665443 33343 466666653
No 165
>PRK06046 alanine dehydrogenase; Validated
Probab=96.81 E-value=0.0021 Score=58.12 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=61.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCC--ccccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
..+|+|+|+ |.+|+.+++.+...++++.+.+++++. ....++.. ..+..+ +.+++|+++++ .+|+|+
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l-------~aDiVv 198 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC-------DCDILV 198 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh-------hCCEEE
Confidence 358999996 999999999998889999999999753 11122221 011223 45578999887 389999
Q ss_pred EccCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650 112 DFTDASTVYDNV-KQATAFGMRSV-VYV 137 (220)
Q Consensus 112 DfT~p~~~~~~~-~~al~~G~~vV-igT 137 (220)
.+|+... +.+ ...++.|.+|. ||.
T Consensus 199 ~aTps~~--P~~~~~~l~~g~hV~~iGs 224 (326)
T PRK06046 199 TTTPSRK--PVVKAEWIKEGTHINAIGA 224 (326)
T ss_pred EecCCCC--cEecHHHcCCCCEEEecCC
Confidence 7665322 222 33468899986 663
No 166
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.79 E-value=0.0089 Score=54.57 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=59.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh-----------hhhcCCCCCCcccc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG-----------MVCDMEQPLEIPVM 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g-----------~l~g~~~~~gv~v~ 91 (220)
..||+|+|+ |.+|..+++.+.. .++.-+.++|++.. + .|++ .+..+.....+..+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~-aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 358999998 9999999999876 47766778886421 0 1111 01111001111111
Q ss_pred ------CCHHHHHhccccCCCccEEEEccCchhHH-HHHHHHHHCCCcEEEeCC
Q 027650 92 ------SDLTMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVigTt 138 (220)
.++++++. ++|+|||.+...... -.-..|.++|+|+|.|..
T Consensus 102 ~~~~~~~~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~ 149 (338)
T PRK12475 102 VTDVTVEELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGC 149 (338)
T ss_pred eccCCHHHHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 23455554 799999998655443 344788899999997643
No 167
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.79 E-value=0.03 Score=48.24 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=100.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
||||+|+.- |.-|.+.+..+..+ =..+++++.+.+. .. ....+.+++.|..+ .++|++|-+
T Consensus 1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~-----------~~fie~P~~~Lp~~---~e~Di~va~ 62 (224)
T COG1810 1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---EL-----------PDFIEEPEDLLPKL---PEADIVVAY 62 (224)
T ss_pred CcEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---cc-----------cchhhCHHHhcCCC---CCCCEEEEe
Confidence 799999985 99999999998854 2356777776421 01 11234566777632 478998877
Q ss_pred c-CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-------CCCcHHHHHHHHHHHHhcCCCCC
Q 027650 114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-------PTLSIGSILLQQAAISASFHYKN 185 (220)
Q Consensus 114 T-~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-------pNfS~Gv~ll~~~a~~~~~~~~d 185 (220)
+ +|+..++..+.+...|...||=-.+-.....++|++.+.+.|+-+... ||= .-.+.+|+....+.-..
T Consensus 63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~---~p~i~~F~e~FG~P~ve 139 (224)
T COG1810 63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNE---NPHIDEFAERFGKPEVE 139 (224)
T ss_pred ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCC---ChHHHHHHHHcCCceEE
Confidence 5 799999999988888877665322333466678899998877766532 342 22367777666443222
Q ss_pred eE-----EEeccCCCCCCCCchhhHHHHHHh
Q 027650 186 VE-----IVESRPNARMQLKSPTTSPTLVRS 211 (220)
Q Consensus 186 iE-----IiE~HH~~K~DaPSGTA~~~~~~~ 211 (220)
+| |... .=++.||=|.+.-++.|-
T Consensus 140 vev~~~~i~~V--~V~RsaPCGsT~~vAk~l 168 (224)
T COG1810 140 VEVENGKIKDV--DVLRSAPCGSTWYVAKRL 168 (224)
T ss_pred EEecCCeEEEE--EEEecCCCchHHHHHHHh
Confidence 22 1222 335689999988776654
No 168
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.78 E-value=0.0078 Score=54.66 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-++|+|+|+ |+||+.+++.+...-++++.+ +|+... ... ...+....++++++. .+|+|+-.
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~~--------~~~~~~~~~l~ell~------~aDvIvl~ 207 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVVA-YDPFPN-AKA--------ATYVDYKDTIEEAVE------GADIVTLH 207 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCcc-HhH--------HhhccccCCHHHHHH------hCCEEEEe
Confidence 3468999997 999999999985444788775 565321 111 112334568999986 79998855
Q ss_pred cCchhHHHHH-----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650 114 TDASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (220)
Q Consensus 114 T~p~~~~~~~-----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v 157 (220)
.+.......+ ...++.|.-+|--+.|.-.++ +.|.++.+++.+
T Consensus 208 lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~i 255 (332)
T PRK08605 208 MPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGLI 255 (332)
T ss_pred CCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCe
Confidence 4322222222 334566664454344654433 445555555444
No 169
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.76 E-value=0.009 Score=51.97 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=57.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhhcCCCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g---------~l~g~~~~~gv~v~-- 91 (220)
..||+|+|+ |.+|..+++.+... ++.=..++|.+.. + .++| .+..+.....+..+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAA-GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHc-CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 358999998 99999999998764 7766677885321 1 0111 01001001111111
Q ss_pred ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
+++++++. ++|+|||++..... ...-..|.++++|+|.|..
T Consensus 102 ~i~~~~~~~~~~------~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 102 KLDDAELAALIA------EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred cCCHHHHHHHhh------cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 12344453 78999998754433 4556888999999997643
No 170
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.75 E-value=0.019 Score=53.05 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=69.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCccccCCHHH--HHhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVV 110 (220)
+||||+|+||-+|+.+++.+.+++++. +..+..+...|+.. .+.+ ....+ .++++ .+ .+.|++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v-~~~~~~~~~------~~vDiv 68 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTL-QDAFDIDAL------KALDII 68 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceE-EcCcccccc------cCCCEE
Confidence 489999999999999999998777765 44444433333322 1111 11222 23322 23 279998
Q ss_pred EEccCchhH-HHHHHHHHHCCCc-EEEeCC-CC-------------CHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 111 IDFTDASTV-YDNVKQATAFGMR-SVVYVP-HI-------------QLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 111 IDfT~p~~~-~~~~~~al~~G~~-vVigTt-G~-------------~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
+ |+.+... .+....+.++|.+ +||-.+ .| +++. |... .+.|+.-+..||=|.-.
T Consensus 69 f-fa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~---i~~~-~~~gi~~ianPNCst~~ 138 (366)
T TIGR01745 69 I-TCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDV---ITDG-LNNGIRTFVGGNCTVSL 138 (366)
T ss_pred E-EcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHH---HHhH-HhCCcCeEECcCHHHHH
Confidence 8 7655544 6778889999975 444443 22 4543 3332 34555447789966544
No 171
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.022 Score=50.52 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=82.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC--CCCcch------hhhhc-CCCCCCccccCCHHHH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH--SVGEDI------GMVCD-MEQPLEIPVMSDLTMV 97 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~--~~g~d~------g~l~g-~~~~~gv~v~~dl~~~ 97 (220)
+++|++.|| |.+|+.+...+.... .+.+|+++|.. ...+|. .+|.. +-...+ . .-+++++
T Consensus 3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~-~-alsLdaL 79 (364)
T KOG0455|consen 3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG-S-ALSLDAL 79 (364)
T ss_pred cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC-C-cccHHHH
Confidence 578999997 999999988776432 36899999842 122222 11111 000111 1 1247777
Q ss_pred HhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (220)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l 171 (220)
++.+...+.+=+++|.|......+....+++.|+.++ || .|+. ..+..++++.....|-++--.-++|+-|
T Consensus 80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~Ia--tpNKKafss-~l~~y~~l~~~~~s~~fi~HEatVGAGL 153 (364)
T KOG0455|consen 80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIA--TPNKKAFSS-TLEHYDKLALHSKSPRFIRHEATVGAGL 153 (364)
T ss_pred HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEe--cCCcccccc-cHHHHHHHHhcCCCCceEEeeccccCCc
Confidence 7665555667799999999999999999999999988 45 4543 2234444444444565655555666644
No 172
>PLN03139 formate dehydrogenase; Provisional
Probab=96.73 E-value=0.02 Score=53.27 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-.+|+|+|. |+||+.+++.+.. -++++.+ +|+.. .+.. .. ...|+..++++++++. .+|+|+..
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~a-fG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~ 262 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKP-FNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVIN 262 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHH-CCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEe
Confidence 3468999996 9999999999876 5899875 67532 1111 11 1335555679999996 79988854
Q ss_pred cC-chhHHH----HHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce
Q 027650 114 TD-ASTVYD----NVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG 158 (220)
Q Consensus 114 T~-p~~~~~----~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~ 158 (220)
.+ ++.+.. .....++.|. ++|-+. |---+ .+.|.++.+++.+.
T Consensus 263 lPlt~~T~~li~~~~l~~mk~ga-~lIN~aRG~iVD-e~AL~~AL~sG~l~ 311 (386)
T PLN03139 263 TPLTEKTRGMFNKERIAKMKKGV-LIVNNARGAIMD-TQAVADACSSGHIG 311 (386)
T ss_pred CCCCHHHHHHhCHHHHhhCCCCe-EEEECCCCchhh-HHHHHHHHHcCCce
Confidence 43 122222 2233344454 444444 42222 24566665555553
No 173
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0059 Score=53.74 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=62.5
Q ss_pred CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHH---HHhccccCCC
Q 027650 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKA 106 (220)
Q Consensus 30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~---~l~~~~~~~~ 106 (220)
.-+...+||++.||.|+.|+.+++++..+|-+|+.-+..+...|+.+..+.. ..+. |.|+.. ...+ ....
T Consensus 14 ~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk----~eiq-y~~lst~D~~kle--e~~a 86 (340)
T KOG4354|consen 14 VKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTK----LEIQ-YADLSTVDAVKLE--EPHA 86 (340)
T ss_pred cccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcch----hhee-ecccchhhHHHhh--cCCc
Confidence 3345668999999999999999999999999999988877777776654332 1221 333222 1111 0123
Q ss_pred ccEEEEccCchhHHHHHHHHH--HCCCcEEEe
Q 027650 107 RAVVIDFTDASTVYDNVKQAT--AFGMRSVVY 136 (220)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al--~~G~~vVig 136 (220)
.|.++ |..|..+.+-...++ .+|+..+|-
T Consensus 87 vd~wv-maLPn~vckpfv~~~~s~~gks~iid 117 (340)
T KOG4354|consen 87 VDHWV-MALPNQVCKPFVSLTESSDGKSRIID 117 (340)
T ss_pred eeeee-eecchhhHHHHHHHHhhcCCceeeee
Confidence 45555 788888764443333 345555543
No 174
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.71 E-value=0.0028 Score=57.45 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=61.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.+++|+|+ |.||+.+++.+.....++-+.++++.. ..+..+...-..++ +.++++.++++. ++|+||-+
T Consensus 129 ~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVita 199 (325)
T TIGR02371 129 SVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAVE------GCDILVTT 199 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEEe
Confidence 58999996 999999999998878889999998742 11222211000234 456789999985 79999965
Q ss_pred cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (220)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-igT 137 (220)
|+ ... +.+ ...++.|.++. ||+
T Consensus 200 T~-s~~-P~~~~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 200 TP-SRK-PVVKADWVSEGTHINAIGA 223 (325)
T ss_pred cC-CCC-cEecHHHcCCCCEEEecCC
Confidence 53 222 222 34568999986 664
No 175
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.67 E-value=0.029 Score=49.37 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=81.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE-ecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-DSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v-d~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
++++|.|.|+| .=++.+++.+...+...++... ++ |.+..+..+-.-..|---.+-+.+.+.+ .++|.+||
T Consensus 1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~---g~~l~~~~~~~~~~G~l~~e~l~~~l~e----~~i~llID 72 (257)
T COG2099 1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGY---GAKLAEQIGPVRVGGFLGAEGLAAFLRE----EGIDLLID 72 (257)
T ss_pred CCceEEEEecc-HHHHHHHHHhhccCccEEEEEcccc---cccchhccCCeeecCcCCHHHHHHHHHH----cCCCEEEE
Confidence 46899999986 5689999999888754444332 22 2222211110000010002334455553 68999999
Q ss_pred ccCchhHH--HH-HHHHHHCCCcEE-EeCCCCCH--------HHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650 113 FTDASTVY--DN-VKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177 (220)
Q Consensus 113 fT~p~~~~--~~-~~~al~~G~~vV-igTtG~~~--------e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~ 177 (220)
.|+|-+.. +| ++.|-+.|++.+ .+-|++.. ++.+++.+++++.+-.|+. .+|.+-+..|.+
T Consensus 73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f~~ 145 (257)
T COG2099 73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHFVA 145 (257)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHHhc
Confidence 99997763 44 578888999987 44555432 5566777777777777777 667766665653
No 176
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=96.67 E-value=0.0097 Score=56.56 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~ 69 (220)
....||+|+|. ||+||.+.|.+.+. ++++|+++.++
T Consensus 125 ~~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~ 164 (477)
T PRK08289 125 IEPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVR 164 (477)
T ss_pred CCCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecC
Confidence 45679999996 99999999998766 68999999753
No 177
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.0073 Score=53.97 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=54.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT- 114 (220)
|||.|.|++|.+|+.+.+.+. ++.++++...++ .++.-.+.+.+++.+ .+||+||.+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence 569999999999999999876 788888754332 122334456677764 5899999753
Q ss_pred --C-------ch--------hHHHHHHHHHHCCCcEE
Q 027650 115 --D-------AS--------TVYDNVKQATAFGMRSV 134 (220)
Q Consensus 115 --~-------p~--------~~~~~~~~al~~G~~vV 134 (220)
. |+ .....++.|.+.|..+|
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV 96 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV 96 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence 1 22 22345678888998887
No 178
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.64 E-value=0.023 Score=45.68 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=74.6
Q ss_pred ceEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
.+|+|+|++-+ -+-.+.+.+.+ .|.++..+ .|...| ++++ |-++|.++.++-. ..|+|..
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~-~GY~ViPV-NP~~~~---~eiL------G~k~y~sL~dIpe------~IDiVdv 79 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQ-KGYRVIPV-NPKLAG---EEIL------GEKVYPSLADIPE------PIDIVDV 79 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHH-CCCEEEee-Ccccch---HHhc------CchhhhcHHhCCC------CCcEEEE
Confidence 47999999865 44556666655 58999875 343323 3444 5578999998864 8999888
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCce
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 158 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~ 158 (220)
|-.|+.+.+.++.+++.|..+|=.-.|...++. .+.+++.|..
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea---~~~~~~aG~~ 122 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEA---AEKARDAGLD 122 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHH---HHHHHHhCcH
Confidence 999999999999999999999977778655443 3344444443
No 179
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.63 E-value=0.018 Score=48.54 Aligned_cols=87 Identities=10% Similarity=0.173 Sum_probs=53.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.++|+|.|. |+||+.+++.+.+ .+.+++ ++|++. ....++.. .++.... +.++++. .++|+++-++
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~-~G~~Vv-v~D~~~--~~~~~~~~---~~g~~~v-~~~~l~~-----~~~Dv~vp~A 93 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLE-EGAKLI-VADINE--EAVARAAE---LFGATVV-APEEIYS-----VDADVFAPCA 93 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHHH---HcCCEEE-cchhhcc-----ccCCEEEecc
Confidence 368999997 9999999999876 488999 677532 12222221 2233333 3355554 3799988554
Q ss_pred CchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 115 DASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 115 ~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
.-... .+++. +-+..+|++--
T Consensus 94 ~~~~I~~~~~~---~l~~~~v~~~A 115 (200)
T cd01075 94 LGGVINDDTIP---QLKAKAIAGAA 115 (200)
T ss_pred cccccCHHHHH---HcCCCEEEECC
Confidence 43322 33333 44677888765
No 180
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0096 Score=54.77 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=63.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.++|||+|. |.||+.+++.+..+ |..|.. +|+.. =.++. ..+|...|+++.++..+ .+|+|+-+|
T Consensus 52 tl~IaIIGf-GnmGqflAetli~a-Gh~li~-hsRsd-yssaa------~~yg~~~ft~lhdlcer-----hpDvvLlct 116 (480)
T KOG2380|consen 52 TLVIAIIGF-GNMGQFLAETLIDA-GHGLIC-HSRSD-YSSAA------EKYGSAKFTLLHDLCER-----HPDVVLLCT 116 (480)
T ss_pred ceEEEEEec-CcHHHHHHHHHHhc-CceeEe-cCcch-hHHHH------HHhcccccccHHHHHhc-----CCCEEEEEe
Confidence 479999996 99999999998864 666654 34321 11222 25666778999887764 899999776
Q ss_pred CchhHHHHHH---HH-HHCCCcEEEeCCCCCHHHHHHHHHH
Q 027650 115 DASTVYDNVK---QA-TAFGMRSVVYVPHIQLETVSALSAF 151 (220)
Q Consensus 115 ~p~~~~~~~~---~a-l~~G~~vVigTtG~~~e~~~~L~~a 151 (220)
........++ .. ++.|. +|+|-+.-.+-+.+.++++
T Consensus 117 silsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekY 156 (480)
T KOG2380|consen 117 SILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKY 156 (480)
T ss_pred hhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHh
Confidence 5544444333 23 45554 3446665444444555444
No 181
>PRK07574 formate dehydrogenase; Provisional
Probab=96.63 E-value=0.023 Score=52.92 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-++|+|+|. |+||+.+++.+... ++++.+ +|+.....+. . ...++..+.++++++. .+|+|+..
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~f-G~~V~~-~dr~~~~~~~---~---~~~g~~~~~~l~ell~------~aDvV~l~ 255 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPF-DVKLHY-TDRHRLPEEV---E---QELGLTYHVSFDSLVS------VCDVVTIH 255 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC-CCEEEE-ECCCCCchhh---H---hhcCceecCCHHHHhh------cCCEEEEc
Confidence 3468999996 99999999988764 888875 5653211111 1 1234555679999986 79998854
Q ss_pred cCc-hhHH----HHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce
Q 027650 114 TDA-STVY----DNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG 158 (220)
Q Consensus 114 T~p-~~~~----~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~ 158 (220)
.+- ..+. +.....++.|. ++|-+. |---+ .+.|.++.+.+.+.
T Consensus 256 lPlt~~T~~li~~~~l~~mk~ga-~lIN~aRG~iVD-e~AL~~AL~sG~i~ 304 (385)
T PRK07574 256 CPLHPETEHLFDADVLSRMKRGS-YLVNTARGKIVD-RDAVVRALESGHLA 304 (385)
T ss_pred CCCCHHHHHHhCHHHHhcCCCCc-EEEECCCCchhh-HHHHHHHHHhCCcc
Confidence 431 1111 22334455665 444443 43222 24555555555553
No 182
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.62 E-value=0.02 Score=50.45 Aligned_cols=99 Identities=12% Similarity=0.206 Sum_probs=55.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cC--CC---------CCCccccCCHH
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DM--EQ---------PLEIPVMSDLT 95 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---------g~--~~---------~~gv~v~~dl~ 95 (220)
-||+|+|+ |.||..++..+... +.++. ++|++. ..+..+. +. +. ..++..+++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~-G~~V~-~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVS-GFQTT-LVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhC-CCcEE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 47999997 99999999988764 77766 456531 1111100 00 00 01234567887
Q ss_pred HHHhccccCCCccEEEEccCchhH-----HHHHHHHHHCCCcEEEeCCCCCHHHH
Q 027650 96 MVLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETV 145 (220)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~G~~vVigTtG~~~e~~ 145 (220)
+++. ++|+||.+.+.+.. +..+...+..+.-+++-|+.++..+.
T Consensus 77 ~~~~------~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l 125 (288)
T PRK09260 77 AAVA------DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125 (288)
T ss_pred Hhhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 7775 78998865443321 12223333444444455666766543
No 183
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.024 Score=52.90 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCCCCCC-ccccCCHHHHHhcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSI 101 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~g~~~~~g-v~v~~dl~~~l~~~ 101 (220)
|||.|+| +|++|-.....+.+. +.+++++ |.+ ....-+.+++......| ...++|+++++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~-GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~-- 75 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAEL-GHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK-- 75 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHc-CCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence 7999999 599999888777664 7888874 521 01112333332111112 566888988886
Q ss_pred ccCCCccEEEEcc--Cch--h---------HHHHHHHHHHCCCcEEEeCC----CCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 102 SQSKARAVVIDFT--DAS--T---------VYDNVKQATAFGMRSVVYVP----HIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 102 ~~~~~~DVVIDfT--~p~--~---------~~~~~~~al~~G~~vVigTt----G~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
+.|+++.++ ++. . +.+.+..+++ +.++|+.+. |.+++-.+.+.+........++++|-
T Consensus 76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~-~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPE 150 (414)
T COG1004 76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILD-GKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPE 150 (414)
T ss_pred ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcC-CCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChH
Confidence 789888764 322 1 1122222222 336666654 78777666666665444566788777
Q ss_pred C
Q 027650 165 L 165 (220)
Q Consensus 165 f 165 (220)
|
T Consensus 151 F 151 (414)
T COG1004 151 F 151 (414)
T ss_pred H
Confidence 6
No 184
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.62 E-value=0.019 Score=52.39 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCCC-----CCccccCCHHHHHhccccCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~g~l~g~~~~-----~gv~v~~dl~~~l~~~~~~~ 105 (220)
.+++|.|.||+|.+|+.+++.+++ .|.++.|.++....-+. +.++-+.+++ -++.-+++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~-rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLS-RGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHh-CCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 567999999999999999999987 59999999975322111 2222222111 12333567888886
Q ss_pred CccEEEEccCc-----------------hhHHHHHHHHHHCC--CcEEE
Q 027650 106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVV 135 (220)
Q Consensus 106 ~~DVVIDfT~p-----------------~~~~~~~~~al~~G--~~vVi 135 (220)
++|.|+..+.| ..+...++.|.+.. +++|.
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 89999976543 12334667888888 66765
No 185
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.61 E-value=0.02 Score=52.28 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=58.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
..+|+|+|+ |+||+.+++.+.. .+++++....+.. +. .+.+ ...|+.+. +++++.. .+|+|+...
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~-sG~~Vvv~~r~~~--~s-~~~A---~~~G~~~~-s~~eaa~------~ADVVvLaV 81 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRD-SGVDVVVGLREGS--KS-WKKA---EADGFEVL-TVAEAAK------WADVIMILL 81 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHH-CCCEEEEEECCch--hh-HHHH---HHCCCeeC-CHHHHHh------cCCEEEEcC
Confidence 358999997 9999999999876 4788876544321 11 1111 12344444 7888875 799999666
Q ss_pred CchhHHHHH-HHH---HHCCCcEEEeCCCCCHHH
Q 027650 115 DASTVYDNV-KQA---TAFGMRSVVYVPHIQLET 144 (220)
Q Consensus 115 ~p~~~~~~~-~~a---l~~G~~vVigTtG~~~e~ 144 (220)
++....+.+ ... ++.|.-+ +=..|++-..
T Consensus 82 Pd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~ 114 (330)
T PRK05479 82 PDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF 114 (330)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh
Confidence 666554444 222 3345444 4466877643
No 186
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.60 E-value=0.025 Score=48.03 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=65.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-----CCCCCCc--cc-cCCHHHHHhccccCCCc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-----MEQPLEI--PV-MSDLTMVLGSISQSKAR 107 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-----~~~~~gv--~v-~~dl~~~l~~~~~~~~~ 107 (220)
|||+|+|++|+||+.+++.+.+. +.++.. +++.. +.+..+.. .. ..++ .+ ..+..+++. .+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G~~V~v-~~r~~--~~~~~l~~~~~~~~~-~~g~~~~~~~~~~~ea~~------~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-GNKIII-GSRDL--EKAEEAAAKALEELG-HGGSDIKVTGADNAEAAK------RA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-CCEEEE-EEcCH--HHHHHHHHHHHhhcc-ccCCCceEEEeChHHHHh------cC
Confidence 58999985699999999998764 677764 45431 11111110 00 1121 12 235556664 78
Q ss_pred cEEEEccCchhHHHHHHHHHH--CCCcEEEeCC-CCCHH--------------HHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650 108 AVVIDFTDASTVYDNVKQATA--FGMRSVVYVP-HIQLE--------------TVSALSAFCDKASMGCLIA-PTLSIGS 169 (220)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al~--~G~~vVigTt-G~~~e--------------~~~~L~~aA~~~~v~vvia-pNfS~Gv 169 (220)
|+||-+.++....+.+..... .+ .+|+-++ |++.+ -.+.|.++.- .+.+++-+ ||+...+
T Consensus 70 DvVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p-~~~~VVka~~~~~a~~ 147 (219)
T TIGR01915 70 DVVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLP-ETSRVVAAFHNLSAVL 147 (219)
T ss_pred CEEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCC-CCCeEeeccccCCHHH
Confidence 999966666666555544322 34 4555443 65431 0133444431 12577877 6666555
No 187
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.58 E-value=0.024 Score=50.39 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=25.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
-||+|+|+ |.||+.++..+... +++++ ++|.
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~-G~~V~-l~d~ 36 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARA-GVDVL-VFET 36 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhC-CCEEE-EEEC
Confidence 48999997 99999999887764 88866 4564
No 188
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.56 E-value=0.012 Score=52.87 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI 111 (220)
...||+|+|+ |.||+.+++.+.. .+..-+.+++++. ..+.+++. .+|.. .++++.+.+. ++|+||
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi 243 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELAK---ELGGNAVPLDELLELLN------EADVVI 243 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEE
Confidence 3579999997 9999999998876 4555566677642 12222321 22222 2345666664 689999
Q ss_pred EccCchhHHHHHHHHH
Q 027650 112 DFTDASTVYDNVKQAT 127 (220)
Q Consensus 112 DfT~p~~~~~~~~~al 127 (220)
.+|......+....++
T Consensus 244 ~at~~~~~~~~~~~~~ 259 (311)
T cd05213 244 SATGAPHYAKIVERAM 259 (311)
T ss_pred ECCCCCchHHHHHHHH
Confidence 8776544434344433
No 189
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.55 E-value=0.026 Score=51.75 Aligned_cols=92 Identities=22% Similarity=0.154 Sum_probs=58.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
+|+|+|+ |.+|...++.+... +.+++++-.++..-+++.++ |. .. +... .+.-+.+. ..+|++||+.
T Consensus 169 ~V~I~G~-GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l-GA--d~-~i~~~~~~~~~~~~-----~~~d~ii~tv 237 (339)
T COG1064 169 WVAVVGA-GGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL-GA--DH-VINSSDSDALEAVK-----EIADAIIDTV 237 (339)
T ss_pred EEEEECC-cHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh-CC--cE-EEEcCCchhhHHhH-----hhCcEEEECC
Confidence 8999998 89999999877765 59999865543211222222 11 11 1111 12223332 1399999998
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCCC
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVPH 139 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTtG 139 (220)
.+......++.+...|.-+++|-++
T Consensus 238 ~~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 238 GPATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ChhhHHHHHHHHhcCCEEEEECCCC
Confidence 8555566677777788888888875
No 190
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.52 E-value=0.011 Score=52.24 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=24.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.||+|+|+ |.||..++..+... +.++. ++|+
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~-G~~V~-l~d~ 34 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFH-GFDVT-IYDI 34 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhc-CCeEE-EEeC
Confidence 358999997 99999999888764 67755 4554
No 191
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.50 E-value=0.021 Score=50.95 Aligned_cols=32 Identities=44% Similarity=0.454 Sum_probs=26.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
+||+|+|+ |.||..++..+... +.+++ ++|+.
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~-G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARA-GHEVR-LWDAD 34 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHC-CCeeE-EEeCC
Confidence 58999996 99999999988875 77766 46653
No 192
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.50 E-value=0.0093 Score=49.49 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=51.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hhcCCC---------CCCccccCCHHHHH
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VCDMEQ---------PLEIPVMSDLTMVL 98 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~d~g~----l~g~~~---------~~gv~v~~dl~~~l 98 (220)
||+|+|+ |.||+.++..+... +++++ ++|++... +.+.. +...+. ...+.+++|++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARA-GYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHT-TSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred CEEEEcC-CHHHHHHHHHHHhC-CCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence 7999997 99999999988776 88887 45642100 01111 100000 01244567887764
Q ss_pred hccccCCCccEEEEccCchh-----HHHHHHHHHHCCCcEEEeCCCCCHHH
Q 027650 99 GSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLET 144 (220)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigTtG~~~e~ 144 (220)
++|+||++.+-+. .+..+...+.....+.+-|.+++..+
T Consensus 78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 6899998765332 23333333445555555566777654
No 193
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.48 E-value=0.039 Score=50.96 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.+.||+|+|+.|.||+.+++.+... +.++.+ +|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G~~V~~-~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-GYQVRI-LEQ 130 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-CCeEEE-eCC
Confidence 5679999996699999999999874 666554 444
No 194
>PLN00016 RNA-binding protein; Provisional
Probab=96.47 E-value=0.016 Score=52.84 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=57.3
Q ss_pred CCCceEEEE----cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCccc-cCCHHH---HHh
Q 027650 33 QSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIPV-MSDLTM---VLG 99 (220)
Q Consensus 33 ~~~ikV~V~----Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----g~l~g~~~~~gv~v-~~dl~~---~l~ 99 (220)
.+++||.|+ |++|.+|+.+++.+.+. +.++.++.......... ..+..+. ..++.+ ..|+.+ ++.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~ 127 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVA 127 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhc
Confidence 345789999 99999999999998874 78998877542211000 0000000 112332 335443 443
Q ss_pred ccccCCCccEEEEccCc--hhHHHHHHHHHHCCCc-EE
Q 027650 100 SISQSKARAVVIDFTDA--STVYDNVKQATAFGMR-SV 134 (220)
Q Consensus 100 ~~~~~~~~DVVIDfT~p--~~~~~~~~~al~~G~~-vV 134 (220)
..++|+||++... ......+.+|.+.|+. +|
T Consensus 128 ----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 128 ----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred ----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 1479999987643 3345566777778874 54
No 195
>PRK08328 hypothetical protein; Provisional
Probab=96.47 E-value=0.023 Score=49.02 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=55.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchhh----------hhcCCCCCCccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIGM----------VCDMEQPLEIPV-- 90 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~g~----------l~g~~~~~gv~v-- 90 (220)
..||+|+|+ |..|..+++.+... ++.=..++|.+.. -.|+|. +... ..++.+
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~--np~v~v~~ 102 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAA-GVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF--NSDIKIET 102 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHc-CCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh--CCCCEEEE
Confidence 358999998 99999999998764 7665667774210 011111 0000 011221
Q ss_pred c------CCHHHHHhccccCCCccEEEEccCc-hhHHHHHHHHHHCCCcEEEeCC
Q 027650 91 M------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 91 ~------~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTt 138 (220)
+ .++++++. ++|+|||++.. +.-...-..|.++|+|+|.|-+
T Consensus 103 ~~~~~~~~~~~~~l~------~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 103 FVGRLSEENIDEVLK------GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred EeccCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 1 23344553 68888887643 3333444668888888887654
No 196
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.47 E-value=0.043 Score=47.04 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=27.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |.+|..+++.+... ++.-..++|.
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~-Gvg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAA-GVGKLGLVDD 53 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 459999998 99999999998764 7777778885
No 197
>PLN02427 UDP-apiose/xylose synthase
Probab=96.43 E-value=0.016 Score=52.85 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
+..+|||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 345679999999999999999999886568888764
No 198
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.42 E-value=0.039 Score=48.32 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=53.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC---CCCCC--ccccCCHHHHHhccccCCCcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM---EQPLE--IPVMSDLTMVLGSISQSKARA 108 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~---~~~~g--v~v~~dl~~~l~~~~~~~~~D 108 (220)
|||+|+|+ |.||..++..+.+. +.++..+..+. .....+. |. ..... +...++.+++ . ++|
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~-g~~V~~~~r~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~------~~d 68 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQA-GHDVTLVARRG---AHLDALNENGLRLEDGEITVPVLAADDPAEL-G------PQD 68 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCh---HHHHHHHHcCCcccCCceeecccCCCChhHc-C------CCC
Confidence 58999997 99999999988764 66765543311 1111111 11 00000 1224455544 3 799
Q ss_pred EEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCH
Q 027650 109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL 142 (220)
Q Consensus 109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~ 142 (220)
+||.++.+..+.+.+... +..+..+|+-..|+..
T Consensus 69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 999777665554444433 3345567766668763
No 199
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.40 E-value=0.019 Score=50.33 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=27.9
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
|.|.|++|-+|+.+++.+.+. +.++++++|+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~-g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC-CCceEEEecCC
Confidence 789999999999999999875 78888888864
No 200
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.40 E-value=0.021 Score=49.35 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=40.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
||.|.|++|.+|+.+++.+.+. +.++.++..+. + ++.-.+++.+++.. .++|+||++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~~------~---------d~~~~~~~~~~~~~----~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTSSQ------L---------DLTDPEALERLLRA----IRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCcc------c---------CCCCHHHHHHHHHh----CCCCEEEECCc
Confidence 6899999999999999998874 78887654321 1 11112345566653 36799998763
No 201
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.39 E-value=0.011 Score=53.71 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=67.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv---g~vd~-~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
.++|+| ||||..|+.+.+.+.+. ++.+- -+-.. ...|+.+. +-| ..+.+- ++++..- .++|++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer-~fpv~~l~l~~s~~~s~gk~i~-f~g----~~~~V~-~l~~~~f-----~~vDia 69 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQS-DLEIEQISIVEIEPFGEEQGIR-FNN----KAVEQI-APEEVEW-----ADFNYV 69 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhc-CCchhheeecccccccCCCEEE-ECC----EEEEEE-ECCccCc-----ccCCEE
Confidence 479999 99999999999987653 44322 22222 22343321 111 122222 2222211 279998
Q ss_pred EEccCchhHHHHHHHHHHCCCcEEEeCCCC-------------CHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~-------------~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
+ |+..+...+....+.++|..||--+..| +++..+.+. + ..++-.||=|.-.
T Consensus 70 ~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~--~~IIanPNCsTi~ 134 (322)
T PRK06901 70 F-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----Q--RNIVSLPDPQVSQ 134 (322)
T ss_pred E-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----C--CCEEECCcHHHHH
Confidence 8 7666666788889999998888655433 455433332 2 2477789955544
No 202
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.39 E-value=0.023 Score=50.15 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=25.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||+|+|+ |.||..++..+... +++++ ++|+
T Consensus 5 ~kI~vIGa-G~mG~~iA~~la~~-G~~V~-l~d~ 35 (292)
T PRK07530 5 KKVGVIGA-GQMGNGIAHVCALA-GYDVL-LNDV 35 (292)
T ss_pred CEEEEECC-cHHHHHHHHHHHHC-CCeEE-EEeC
Confidence 58999997 99999999988764 77776 4665
No 203
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.37 E-value=0.049 Score=50.96 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
++||+|+|. |.||..++..+.+. +.++.+ +|+
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~-G~~V~~-~D~ 34 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASR-QKQVIG-VDI 34 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhC-CCEEEE-EeC
Confidence 579999996 99999999988764 788775 564
No 204
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.094 Score=49.94 Aligned_cols=136 Identities=22% Similarity=0.194 Sum_probs=74.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDf 113 (220)
.||+|+|. |+.|...++.+.. .+.++++ +|... .....+. ..|+.+.. ...+.+. ++|+||..
T Consensus 13 ~~v~V~G~-G~sG~aa~~~L~~-~G~~v~~-~D~~~--~~~~~l~----~~g~~~~~~~~~~~~l~------~~D~VV~S 77 (488)
T PRK03369 13 APVLVAGA-GVTGRAVLAALTR-FGARPTV-CDDDP--DALRPHA----ERGVATVSTSDAVQQIA------DYALVVTS 77 (488)
T ss_pred CeEEEEcC-CHHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH----hCCCEEEcCcchHhHhh------cCCEEEEC
Confidence 48999996 9999999987664 5788776 77431 1122221 23544432 2333343 68988854
Q ss_pred c-CchhHHHHHHHHHHCCCcEE---------------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 114 T-DASTVYDNVKQATAFGMRSV---------------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 114 T-~p~~~~~~~~~al~~G~~vV---------------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
. .|.. .+.+..|.+.|++++ ||-||-+ + -...-|..+-+..|.+.....| +|.
T Consensus 78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~ 154 (488)
T PRK03369 78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS 154 (488)
T ss_pred CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence 3 2332 234555555544333 4444432 1 1223345555556667676677 566
Q ss_pred HHHHHHHHHhcCCCCCeEEEeccCC
Q 027650 170 ILLQQAAISASFHYKNVEIVESRPN 194 (220)
Q Consensus 170 ~ll~~~a~~~~~~~~diEIiE~HH~ 194 (220)
.++..+ . ...|+-|+|.-..
T Consensus 155 p~~~~~----~-~~~~~~VlE~ss~ 174 (488)
T PRK03369 155 PVLDVL----D-EPAELLAVELSSF 174 (488)
T ss_pred HHHHhc----c-CCCCEEEEECChH
Confidence 554322 2 2356777776543
No 205
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=96.35 E-value=0.041 Score=51.22 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=31.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~ 69 (220)
|.||+|.|+||-+|+...+.+.++|+ ++++++...
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~ 36 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG 36 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC
Confidence 46999999999999999999988766 999999873
No 206
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=96.34 E-value=0.0052 Score=56.11 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=96.4
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEccCc
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFTDA 116 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (220)
|+|.| ||-.-+..+-.+.+.+ +++-+++.+... .+.+.+ ....++. ++.+++.+.. .+.|.|...-+|
T Consensus 5 v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~~--ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~lpp 73 (367)
T KOG2742|consen 5 VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTKT--EAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCISLPP 73 (367)
T ss_pred eeEec-cChhHhhhhhhhhhcc-chHhhhhchhhh--HHHHhh---hccchhhccccchhhhcc----CCcceeEeccCC
Confidence 99999 5988888877777665 999998877321 111111 1234454 4588998864 567765546678
Q ss_pred hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc-HHH-HHHHHHHHHhcCCCCCeEEEecc-C
Q 027650 117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS-IGS-ILLQQAAISASFHYKNVEIVESR-P 193 (220)
Q Consensus 117 ~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS-~Gv-~ll~~~a~~~~~~~~diEIiE~H-H 193 (220)
..+.+.+..++..|+|||+++|..+.++...+.++++......++..|+- ++. .-++++.+.. +..++-..|.| +
T Consensus 74 ~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~~L~~lv~~~lrflp~f~~~k~~ie~i--~~g~vv~~~~~v~ 151 (367)
T KOG2742|consen 74 PLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSPKLMSLVGHVLRFLPAFVTAKELIEEI--YVGEVVRCDVRVD 151 (367)
T ss_pred ccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhchhHHHHhhhhhhhhHHHHHHHHHHHhc--cCCCeeeeeeeee
Confidence 88899999999999999999999777888888888766333322222210 111 0022222222 12244455555 6
Q ss_pred CCCCCCCchhhH
Q 027650 194 NARMQLKSPTTS 205 (220)
Q Consensus 194 ~~K~DaPSGTA~ 205 (220)
+.+.=.|||+-+
T Consensus 152 ~~~l~~k~~~W~ 163 (367)
T KOG2742|consen 152 RGRLFRKSYNWK 163 (367)
T ss_pred cceecccCCccc
Confidence 666666666543
No 207
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.33 E-value=0.077 Score=52.79 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=61.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID 112 (220)
.||+|+|+ |.||..+++.+.+.. ..++. ++|++. ....... ..|+. ...++++++. ++|+||.
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil 69 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRA--KSLELAV----SLGVIDRGEEDLAEAVS------GADVIVL 69 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECCh--hHHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence 58999996 999999999987642 23544 467642 1122211 12332 3456777775 7999997
Q ss_pred ccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHh
Q 027650 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC 152 (220)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA 152 (220)
+++|....+.+..... ..-.+|+-..+....-.+.+++..
T Consensus 70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 7777665555554432 122355544555544455566553
No 208
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.32 E-value=0.0052 Score=56.35 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=29.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
+||+|+|. ||+||.+.|++.+.+++|+|++-|
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecC
Confidence 79999997 999999999988788999999977
No 209
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.31 E-value=0.036 Score=43.38 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=62.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.||+|+|+ |.+|..+++.+... ++.=.-++|.+.. ..++... +......|-+-..-+.+.+.+ ..|++=|..
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~-Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~np~~~v~~ 76 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARS-GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQE----INPDVEVEA 76 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHH-TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHH----HSTTSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHh-CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHH----hcCceeeee
Confidence 58999997 99999999998764 7766668886421 1122210 000001122222223333332 244443422
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap 163 (220)
-......++....+ .+..+|+.++.- .+....|.+++++.++|++.+.
T Consensus 77 ~~~~~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 77 IPEKIDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp EESHCSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred eecccccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 21122234444444 466777765433 4445667888888888877653
No 210
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.30 E-value=0.042 Score=46.38 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=61.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~--l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
..||.|+|+ |.+|..+++.+... ++.=+-++|++.. -.++.. +... +..|-+-.+.+.+.+.+ -++++-|
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~-Gv~~i~lvD~d~ve~sNL~Rq~l~~~-~diG~~Ka~~~~~~l~~----~np~v~i 93 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGA-GVGTIVIVDDDHVDLSNLQRQILFTE-EDVGRPKVEVAAQRLRE----LNSDIQV 93 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHc-CCCeEEEecCCEEcccchhhhhccCh-hhCCChHHHHHHHHHHH----hCCCCEE
Confidence 458999997 99999999998765 6654556776421 111111 0000 01111111112222221 2455444
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf 165 (220)
+.-......+++...+ .+..+|+.++.- .+....|.++|++.++|++.+...
T Consensus 94 ~~~~~~i~~~~~~~~~-~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~ 145 (202)
T TIGR02356 94 TALKERVTAENLELLI-NNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVV 145 (202)
T ss_pred EEehhcCCHHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEec
Confidence 3211111123333333 356677766532 344556777778888887765543
No 211
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.29 E-value=0.081 Score=48.42 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=57.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEEEcc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
||+|+|. |.||..+++.+... +.++. +++++..........+ .++. ..+++++++. ++|+||-++
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~-G~~v~-i~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~------~aDlVilav 68 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAA-GPDVF-IIGYDPSAAQLARALG----FGVIDELAADLQRAAA------EADLIVLAV 68 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhc-CCCeE-EEEeCCCHHHHHHHhc----CCCCcccccCHHHHhc------CCCEEEEeC
Confidence 7999996 99999999998764 44443 3443211111111111 2221 2456777764 799999777
Q ss_pred CchhHHHHHHHHHHC--C-CcEEEeCCCCCHHHHHHHHHH
Q 027650 115 DASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAF 151 (220)
Q Consensus 115 ~p~~~~~~~~~al~~--G-~~vVigTtG~~~e~~~~L~~a 151 (220)
+|....+.+...... . -.+|+-..+...+..+.+.+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 777666666555431 1 134433344555545555554
No 212
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.015 Score=51.34 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=25.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
-||+|+|+ |.||..++..+... +++++ ++|+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~-G~~V~-l~d~ 34 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFART-GYDVT-IVDV 34 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhc-CCeEE-EEeC
Confidence 48999997 99999999988764 77766 4664
No 213
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.26 E-value=0.02 Score=50.68 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=26.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.||+|+|+ |.||..++..+... +++++ ++|+
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~-G~~V~-~~d~ 35 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAA-GMDVW-LLDS 35 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhc-CCeEE-EEeC
Confidence 458999997 99999999998765 77776 4565
No 214
>PLN02477 glutamate dehydrogenase
Probab=96.26 E-value=0.046 Score=51.31 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=73.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC-------CccccCCHHHHHhccc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-------EIPVMSDLTMVLGSIS 102 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~-------gv~v~~dl~~~l~~~~ 102 (220)
..||+|.|. |++|+.+++.+.+ .+..||++.|. +..|-|+.++....... +.. .-+.++++.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~--- 279 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIHE-KGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILV--- 279 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCcccee---
Confidence 369999996 9999999998866 58999999995 34577776654211000 111 124455665
Q ss_pred cCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
.++||+|=+...... .+++. +-+..+|+|-. .++++-.+.| +++ .+++.|.|.
T Consensus 280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~ 335 (410)
T PLN02477 280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIY 335 (410)
T ss_pred --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHH
Confidence 489999977654444 44554 35889999876 3566543333 343 455556543
No 215
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.21 E-value=0.016 Score=49.08 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv 64 (220)
|||+|+|++|+||+.+++.+.+. |+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCEEE
Confidence 58999999999999999988764 77653
No 216
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.19 E-value=0.062 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.+
T Consensus 19 ~s~VlviG~-gglGsevak~L~~-~GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVL-AGIDSITIVDHR 52 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 358999998 8899999999875 588777788864
No 217
>PLN02778 3,5-epimerase/4-reductase
Probab=96.18 E-value=0.054 Score=47.98 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEE
Q 027650 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG 65 (220)
Q Consensus 30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg 65 (220)
.|....|||.|.|++|-+|+.+++.+.+. +.+++.
T Consensus 4 ~~~~~~~kiLVtG~tGfiG~~l~~~L~~~-g~~V~~ 38 (298)
T PLN02778 4 TAGSATLKFLIYGKTGWIGGLLGKLCQEQ-GIDFHY 38 (298)
T ss_pred CCCCCCCeEEEECCCCHHHHHHHHHHHhC-CCEEEE
Confidence 34455579999999999999999998764 667653
No 218
>PRK06091 membrane protein FdrA; Validated
Probab=96.17 E-value=0.028 Score=54.55 Aligned_cols=75 Identities=8% Similarity=0.101 Sum_probs=62.7
Q ss_pred CccccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (220)
Q Consensus 87 gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf 165 (220)
.++.+.++.++.+.+ .++|+++.+.++..+.+.++.|++.|+++||=+.|+..+..++|.++|+++|+.+ +=||-
T Consensus 101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glrv-mGPNC 175 (555)
T PRK06091 101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLV-MGPDC 175 (555)
T ss_pred CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEE-ECCCC
Confidence 456778888887642 4679888788888889999999999999999888999888899999999988765 55886
No 219
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.031 Score=54.28 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
+.....|+.|+|| |.-|..+++.+...+.+..||++|.+
T Consensus 112 ~~~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd 150 (588)
T COG1086 112 QKDNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDD 150 (588)
T ss_pred cccCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCC
Confidence 4455689999998 99999999999999999999999964
No 220
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.15 E-value=0.046 Score=49.00 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=54.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--CC---------CCccccCCHHHHHhccc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--QP---------LEIPVMSDLTMVLGSIS 102 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~--~~---------~gv~v~~dl~~~l~~~~ 102 (220)
+|+||+|+|+ |.||..++..+.+. +.++.. +++...-+.+.+ .|.. .. ..+...++.+ .+
T Consensus 1 ~~mkI~IiG~-G~mG~~~A~~L~~~-G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 71 (341)
T PRK08229 1 MMARICVLGA-GSIGCYLGGRLAAA-GADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPA-AL---- 71 (341)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhc-CCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccChh-hc----
Confidence 4789999997 99999999988765 677765 444210010100 0100 00 0122344553 33
Q ss_pred cCCCccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCH
Q 027650 103 QSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL 142 (220)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~ 142 (220)
.++|+||.++.+....+.+... +..+..+|.-+.|+..
T Consensus 72 --~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 72 --ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred --cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 2799999776655444444333 3344545555568764
No 221
>PLN00106 malate dehydrogenase
Probab=96.14 E-value=0.032 Score=50.72 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 21 AKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 21 ~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
++|.-.|-+.--....||+|+|++|++|..++-.+...+-..=.-++|.
T Consensus 4 ~~~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 4 ASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred hhhhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 3444456544444446999999889999999998876554433346675
No 222
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.12 E-value=0.031 Score=52.67 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
...+|+|+|+ |.+|+.+++.+... +++++ ++|.+.. + ..+.. ..|..+ .++++++. .+|+||++
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~-Ga~Vi-V~d~dp~-r-a~~A~----~~G~~v-~~l~eal~------~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGL-GARVI-VTEVDPI-C-ALQAA----MDGFRV-MTMEEAAE------LGDIFVTA 274 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC-CCEEE-EEcCCch-h-hHHHH----hcCCEe-cCHHHHHh------CCCEEEEC
Confidence 3458999997 99999999988765 77754 4664321 1 11111 123333 36788775 79999998
Q ss_pred cCchhHH-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHh
Q 027650 114 TDASTVY-DNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152 (220)
Q Consensus 114 T~p~~~~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA 152 (220)
|...... ......++.|.-++...-.-.+-+.+.|++.+
T Consensus 275 TG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 275 TGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA 314 (425)
T ss_pred CCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence 8544443 34445556665554322211233445566553
No 223
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.12 E-value=0.039 Score=48.68 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=51.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|||.|.|++|-+|+.+++.+.+. + ++++ +++... .+. .++.-.+.+.++++. .++|+||.+..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~~-----~Dl~d~~~~~~~~~~----~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DYC-----GDFSNPEGVAETVRK----IRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----ccc-----CCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence 58999999999999999988765 4 5554 443210 000 011112334455542 36999998742
Q ss_pred ----------chh--------HHHHHHHHHHCCCcEEEeCC
Q 027650 116 ----------AST--------VYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 116 ----------p~~--------~~~~~~~al~~G~~vVigTt 138 (220)
|+. ....++.|.+.|+++|.-.|
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 111 22355677788888875443
No 224
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.11 E-value=0.076 Score=50.46 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=76.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCC-----------C-CCCccccCCH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDME-----------Q-PLEIPVMSDL 94 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l---~g~~-----------~-~~gv~v~~dl 94 (220)
..||+|-|. |++|+..++.+.+ .+.++|++.|+ +..|-|..++ .... + ..+.... +.
T Consensus 237 Gk~VaVqG~-GnVg~~aa~~L~e-~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~ 313 (454)
T PTZ00079 237 GKTVVVSGS-GNVAQYAVEKLLQ-LGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PG 313 (454)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CC
Confidence 469999996 9999999999876 59999999996 3456665544 1100 0 0022211 23
Q ss_pred HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
++++. .++||++=+...... .+++....+.+..+|+|-- + .+++-.+.| +++ .+++.|.+.
T Consensus 314 ~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L----~~~--GI~~~PD~~ 377 (454)
T PTZ00079 314 KKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF----KKN--GVIFCPGKA 377 (454)
T ss_pred cCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH----HHC--CcEEEChhh
Confidence 44444 379999877665544 6788888899999999876 2 455433223 333 456656543
No 225
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.11 E-value=0.042 Score=52.07 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=67.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCC-----------CC-CccccCCH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQ-----------PL-EIPVMSDL 94 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l---~g~~~-----------~~-gv~v~~dl 94 (220)
..||+|-|. |++|+..++.+.+ .+.+||++.|+ +..|-|..++ ..... .+ +.... +.
T Consensus 228 g~~vaIQGf-GnVG~~aA~~L~e-~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~ 304 (445)
T PRK14030 228 GKTVAISGF-GNVAWGAATKATE-LGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AG 304 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CC
Confidence 369999996 9999999999876 59999999884 3446665542 11100 11 22222 34
Q ss_pred HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
++++. .++||+|=+...... .+++....+++..+|+|--
T Consensus 305 ~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgA 344 (445)
T PRK14030 305 KKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVS 344 (445)
T ss_pred cccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCC
Confidence 55665 489999977765444 6888888899999999876
No 226
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.10 E-value=0.043 Score=50.12 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
+..+||.|.|++|.+|+.+++.+.+. +.++.++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAE-GHYIIASDW 53 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEe
Confidence 45689999999999999999999874 789888653
No 227
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.08 E-value=0.047 Score=49.54 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=42.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecC-----CCCcchhhhhcC--CCCCCccccCCHHHHHhcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSH-----SVGEDIGMVCDM--EQPLEIPVMSDLTMVLGSI 101 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~-----~~g~d~g~l~g~--~~~~gv~v~~dl~~~l~~~ 101 (220)
.+||+|+|++|++|+.++..+...+ +.+|+. +|.. ..|... ++... .....+.+..++.+.++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~~~-Dl~d~~~~~~~~~~~~~~~~~~l~-- 77 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGVVM-ELQDCAFPLLKSVVATTDPEEAFK-- 77 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCccccccceee-ehhhccccccCCceecCCHHHHhC--
Confidence 5799999999999999999887643 237765 4541 122111 11110 00113344567666665
Q ss_pred ccCCCccEEEEc
Q 027650 102 SQSKARAVVIDF 113 (220)
Q Consensus 102 ~~~~~~DVVIDf 113 (220)
++|+||..
T Consensus 78 ----~aDiVI~t 85 (325)
T cd01336 78 ----DVDVAILV 85 (325)
T ss_pred ----CCCEEEEe
Confidence 89998854
No 228
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.08 E-value=0.061 Score=44.38 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
||+|+|+ |.||..+++.+.. .++.=+.++|.+
T Consensus 1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDFD 32 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 6999998 9999999998876 477655677853
No 229
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.06 E-value=0.012 Score=48.52 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
...+|+|+|+ |++|+.+++.+... ++++.+ +|+.. .+..... ..++ -+.++++++. .+|+|+..
T Consensus 35 ~g~tvgIiG~-G~IG~~vA~~l~~f-G~~V~~-~d~~~--~~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~ 98 (178)
T PF02826_consen 35 RGKTVGIIGY-GRIGRAVARRLKAF-GMRVIG-YDRSP--KPEEGAD----EFGV-EYVSLDELLA------QADIVSLH 98 (178)
T ss_dssp TTSEEEEEST-SHHHHHHHHHHHHT-T-EEEE-EESSC--HHHHHHH----HTTE-EESSHHHHHH------H-SEEEE-
T ss_pred CCCEEEEEEE-cCCcCeEeeeeecC-CceeEE-ecccC--Chhhhcc----cccc-eeeehhhhcc------hhhhhhhh
Confidence 3469999996 99999999998865 888886 45532 1111011 1233 3679999997 69998854
Q ss_pred c
Q 027650 114 T 114 (220)
Q Consensus 114 T 114 (220)
.
T Consensus 99 ~ 99 (178)
T PF02826_consen 99 L 99 (178)
T ss_dssp S
T ss_pred h
Confidence 3
No 230
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.03 E-value=0.012 Score=46.38 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E-QPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
...||.|+|+ |+||+.++..+... +++=+-++.++. ..+.++... + ....+.-++++.+.+. ++|+||
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI 80 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVI 80 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEE
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEE
Confidence 3458999997 99999999999876 777556676642 223333211 0 0112233667777775 799999
Q ss_pred EccC
Q 027650 112 DFTD 115 (220)
Q Consensus 112 DfT~ 115 (220)
..|+
T Consensus 81 ~aT~ 84 (135)
T PF01488_consen 81 NATP 84 (135)
T ss_dssp E-SS
T ss_pred EecC
Confidence 6664
No 231
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.00 E-value=0.014 Score=52.81 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=59.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCc--cccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
..+++|+|+ |.+|+.+++.+....+++-+.++++.. ..+..+.. +....++ ..++++++++. ++|+||
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVv 199 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIV 199 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEE
Confidence 358999997 999999999998667888888888742 12222221 0012233 34788999885 799999
Q ss_pred EccCchhHHHHH-HHHHHCCCcEE-Ee
Q 027650 112 DFTDASTVYDNV-KQATAFGMRSV-VY 136 (220)
Q Consensus 112 DfT~p~~~~~~~-~~al~~G~~vV-ig 136 (220)
-+|+... +.+ ...++.|.++. +|
T Consensus 200 taT~s~~--p~i~~~~l~~g~~i~~vg 224 (326)
T TIGR02992 200 TTTPSET--PILHAEWLEPGQHVTAMG 224 (326)
T ss_pred EecCCCC--cEecHHHcCCCcEEEeeC
Confidence 6664322 222 34578888876 44
No 232
>PRK05865 hypothetical protein; Provisional
Probab=96.00 E-value=0.063 Score=54.76 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=61.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|||.|.|++|.+|+.+++.+.+. +.+++++..+.. .. ... +.. -..++.-.+++.+++. ++|+||.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~-~~-~~~--~v~~v~gDL~D~~~l~~al~------~vD~VVHlA 69 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRP-DS-WPS--SADFIAADIRDATAVESAMT------GADVVAHCA 69 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCch-hh-ccc--CceEEEeeCCCHHHHHHHHh------CCCEEEECC
Confidence 58999999999999999988764 788887654311 00 000 000 0001111223444554 699999876
Q ss_pred Cch---------hHHHHHHHHHHCCCc-EE-EeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 115 DAS---------TVYDNVKQATAFGMR-SV-VYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 115 ~p~---------~~~~~~~~al~~G~~-vV-igTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
... .....+..+.+.|+. +| +++.. + ...++++++.+++++
T Consensus 70 a~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--K---~aaE~ll~~~gl~~v 121 (854)
T PRK05865 70 WVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH--Q---PRVEQMLADCGLEWV 121 (854)
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--H---HHHHHHHHHcCCCEE
Confidence 321 223445666777764 44 33322 2 334455555677665
No 233
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=95.94 E-value=0.044 Score=43.56 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.1
Q ss_pred EEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec
Q 027650 38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS 69 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~ 69 (220)
|+|.|+||-+|+...+.+.++| .++|+++...
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 6899999999999999999888 5999999874
No 234
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.063 Score=50.93 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=63.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhh----------c----CCCCCCccccCCHH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVC----------D----MEQPLEIPVMSDLT 95 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~----------g----~~~~~gv~v~~dl~ 95 (220)
..||+|.|. |++|...++.+.+ .+.+|+++.|. +..|-|..++. + .....++... +.+
T Consensus 228 g~rVaVQGf-GNVG~~aA~~L~e-~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d 304 (444)
T PRK14031 228 GKVCLVSGS-GNVAQYTAEKVLE-LGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGA 304 (444)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCc
Confidence 369999996 9999999998876 69999999994 23455553332 0 0000122222 345
Q ss_pred HHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
+.+. .++|++|=+...... .+++......|+.+|++--
T Consensus 305 ~~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgA 343 (444)
T PRK14031 305 RPWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGA 343 (444)
T ss_pred cccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCC
Confidence 5554 378988866654443 6788887788888888655
No 235
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=95.88 E-value=0.044 Score=51.55 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
|||.|.|++|-+|+.+++.+.+. +.+++++
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~l 150 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGR-GDEVIVI 150 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHC-CCEEEEE
Confidence 79999999999999999998875 7888874
No 236
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.88 E-value=0.013 Score=52.99 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=57.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIP--VMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI 111 (220)
..+|+|+|+ |.+|+.++..+....+++-+.+++++. ..+..+.. ....+++. .++|+++++. ++|+||
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi 202 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIV 202 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEE
Confidence 358999997 999999999888666788888888642 11222221 00122443 4789999886 799998
Q ss_pred EccCchhHHHHHH-HHHHCCCcEE
Q 027650 112 DFTDASTVYDNVK-QATAFGMRSV 134 (220)
Q Consensus 112 DfT~p~~~~~~~~-~al~~G~~vV 134 (220)
-.|+.. . +.+. ..++.|.++.
T Consensus 203 ~aT~s~-~-p~i~~~~l~~g~~v~ 224 (330)
T PRK08291 203 TTTPSE-E-PILKAEWLHPGLHVT 224 (330)
T ss_pred EeeCCC-C-cEecHHHcCCCceEE
Confidence 555432 1 2232 2367787765
No 237
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.87 E-value=0.05 Score=49.48 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=60.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-.+|+|+|. |+||+.+++.+... ++++. ++|+..... ... ..++. +.++++++. .+|+|+..
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~-~~~------~~~~~-~~~l~ell~------~aDiV~l~ 211 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGF-GMRIL-YYSRTRKPE-AEK------ELGAE-YRPLEELLR------ESDFVSLH 211 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHC-CCEEE-EECCCCChh-hHH------HcCCE-ecCHHHHHh------hCCEEEEe
Confidence 3469999996 99999999998764 78876 567632111 111 12333 468999986 79998855
Q ss_pred cCchh-HH----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650 114 TDAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (220)
Q Consensus 114 T~p~~-~~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v 157 (220)
.+... +. +.....++.|.-+|--..|---++ +.|.++.+++.+
T Consensus 212 lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~-~aL~~aL~~g~i 259 (333)
T PRK13243 212 VPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT-KALVKALKEGWI 259 (333)
T ss_pred CCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH-HHHHHHHHcCCe
Confidence 43211 11 222334455544443333432222 445555555433
No 238
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.86 E-value=0.063 Score=49.60 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.++||.|+|++|.+|+.+++.+.+. +.+++++..+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVARE 93 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEec
Confidence 4579999999999999999998764 7898887643
No 239
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.85 E-value=0.057 Score=49.10 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
..++|+|+|+ |+||+.+++.+.. -++++++ +|+... .. .+ .+....++++++. ++|+|+..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~-~G~~V~~-~d~~~~-~~----~~-----~~~~~~~l~ell~------~aDiVil~ 205 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAG-FGATITA-YDAYPN-KD----LD-----FLTYKDSVKEAIK------DADIISLH 205 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHh-CCCEEEE-EeCChh-Hh----hh-----hhhccCCHHHHHh------cCCEEEEe
Confidence 3358999997 9999999998875 4888875 565321 00 00 1223468999986 79998854
Q ss_pred cCchh-H----HHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCc
Q 027650 114 TDAST-V----YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM 157 (220)
Q Consensus 114 T~p~~-~----~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v 157 (220)
.+... + .+.....++.|.-+| -+. |.--++ +.|.++-++..+
T Consensus 206 lP~t~~t~~li~~~~l~~mk~gavlI-N~aRG~~vd~-~aL~~aL~~g~i 253 (330)
T PRK12480 206 VPANKESYHLFDKAMFDHVKKGAILV-NAARGAVINT-PDLIAAVNDGTL 253 (330)
T ss_pred CCCcHHHHHHHhHHHHhcCCCCcEEE-EcCCccccCH-HHHHHHHHcCCe
Confidence 43221 1 122233345565444 444 543333 345555555434
No 240
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.84 E-value=0.097 Score=51.16 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
-.|.|.|++|++|+.+++.+.+. +.+++++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeC
Confidence 46999999999999999998764 888887654
No 241
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.83 E-value=0.073 Score=49.93 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=52.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
..-+|+|+|+ |.+|+.+++.+... +++++. +|.+.. + ..+.. ..|..+ .++++++. ..|++|++
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~-Ga~ViV-~d~dp~-r-~~~A~----~~G~~v-~~leeal~------~aDVVIta 257 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGM-GARVIV-TEVDPI-R-ALEAA----MDGFRV-MTMEEAAK------IGDIFITA 257 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhC-cCEEEE-EeCChh-h-HHHHH----hcCCEe-CCHHHHHh------cCCEEEEC
Confidence 3459999997 99999999988754 888654 654321 1 11111 123332 35677764 78999988
Q ss_pred cCchhHHH-HHHHHHHCCCcEEE
Q 027650 114 TDASTVYD-NVKQATAFGMRSVV 135 (220)
Q Consensus 114 T~p~~~~~-~~~~al~~G~~vVi 135 (220)
|....... .....++.|.-++.
T Consensus 258 TG~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 258 TGNKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred CCCHHHHHHHHHhcCCCCcEEEE
Confidence 86555443 34455666654443
No 242
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.82 E-value=0.051 Score=47.93 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ccccCCHHHHHhccccCCCccEEEEc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
..||.|+|+ |++|+.++..+... ++.=+-+++++. +.+.++...-.... +.+..+..+.+. ++|+||..
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~--~~a~~l~~~~~~~~~~~~~~~~~~~~~------~~DivIna 192 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTV--ERAEELAKLFGALGKAELDLELQEELA------DFDLIINA 192 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHHHHHHhhhccceeecccchhccc------cCCEEEEC
Confidence 358999997 99999999999864 533344556532 22222221000111 222113334443 79999977
Q ss_pred cCchhHH-----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650 114 TDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (220)
Q Consensus 114 T~p~~~~-----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~ 179 (220)
|+..... +.....+..+ .+|+- --+++.. ..|.+.|++.|.+++- .+++ |+.+++.+.
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~D-ivY~P~~-T~ll~~A~~~G~~~~~----G~~M-l~~Qa~~~f 255 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPG-TIVYD-MIYGPLP-TPFLAWAKAQGARTID----GLGM-LVHQAAEAF 255 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCC-CEEEE-eecCCCC-CHHHHHHHHCcCeecC----CHHH-HHHHHHHHH
Confidence 6532211 1112334444 33321 1223322 3477888888876653 5555 555665444
No 243
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.81 E-value=0.13 Score=47.01 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=59.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchh-----------hhhcCCCCCCcccc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIG-----------MVCDMEQPLEIPVM 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~g-----------~l~g~~~~~gv~v~ 91 (220)
..||.|+|+ |.+|..++..+... ++.=+.++|.+.. -.|++ .+..+.....+..+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRA-GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHc-CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 458999998 99999999998764 7766678885320 01111 01111111111111
Q ss_pred ------CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
.++++++. ++|+|||++..... ...-..|.+.|+|+|.|..
T Consensus 102 ~~~~~~~~~~~~~~------~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 102 VQDVTAEELEELVT------GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred eccCCHHHHHHHHc------CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 12344553 79999998854444 4556889999999997654
No 244
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.80 E-value=0.13 Score=44.71 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |..|..+++.+.. .++.=..++|.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~ 64 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF 64 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 459999998 9999999999876 47665667774
No 245
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.79 E-value=0.096 Score=44.11 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=28.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
.||.|+|+ |.+|.++++.+.. .|+.=+.++|++
T Consensus 22 s~VlIiG~-gglG~evak~La~-~GVg~i~lvD~d 54 (197)
T cd01492 22 ARILLIGL-KGLGAEIAKNLVL-SGIGSLTILDDR 54 (197)
T ss_pred CcEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 58999998 8899999999876 588877788864
No 246
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.78 E-value=0.18 Score=46.88 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=23.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
|||+|+|. |+||..++..+. . ++++++ +|.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~-G~~Vig-vD~ 30 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-Q-NHEVVA-LDI 30 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-h-CCcEEE-EEC
Confidence 48999996 999999996655 3 788775 664
No 247
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.74 E-value=0.057 Score=53.21 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=29.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
++||.|.|++|-+|+.+++.+.++.+.+++++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 4689999999999999999998766799998643
No 248
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.72 E-value=0.082 Score=45.40 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
||+++|.|. |+||..+++.+... +.|++-+..+.. +...... +.++..+ -.+.+++.+ ..|||| .
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~a-g~eV~igs~r~~--~~~~a~a---~~l~~~i~~~~~~dA~~------~aDVVv-L 66 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKA-GHEVIIGSSRGP--KALAAAA---AALGPLITGGSNEDAAA------LADVVV-L 66 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhC-CCeEEEecCCCh--hHHHHHH---HhhccccccCChHHHHh------cCCEEE-E
Confidence 688999995 99999999988764 788876544321 1111111 0112112 234455543 699999 6
Q ss_pred cCchhH-HHHHHHHHH-C-CCcEE
Q 027650 114 TDASTV-YDNVKQATA-F-GMRSV 134 (220)
Q Consensus 114 T~p~~~-~~~~~~al~-~-G~~vV 134 (220)
+.|-.. .+.+....+ . |+-||
T Consensus 67 AVP~~a~~~v~~~l~~~~~~KIvI 90 (211)
T COG2085 67 AVPFEAIPDVLAELRDALGGKIVI 90 (211)
T ss_pred eccHHHHHhHHHHHHHHhCCeEEE
Confidence 666544 444443332 3 45444
No 249
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.72 E-value=0.093 Score=49.35 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+|||+|+|. |+||.-++..+.. ++++++ +|.
T Consensus 6 ~mkI~vIGl-GyvGlpmA~~la~--~~~V~g-~D~ 36 (425)
T PRK15182 6 EVKIAIIGL-GYVGLPLAVEFGK--SRQVVG-FDV 36 (425)
T ss_pred CCeEEEECc-CcchHHHHHHHhc--CCEEEE-EeC
Confidence 479999995 9999999998765 588876 664
No 250
>PLN02206 UDP-glucuronate decarboxylase
Probab=95.71 E-value=0.064 Score=50.54 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=27.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
.+||.|.|++|-+|+.+++.+.+. +.+++++
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~l 149 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVV 149 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHC-cCEEEEE
Confidence 479999999999999999999875 7888865
No 251
>PRK08223 hypothetical protein; Validated
Probab=95.69 E-value=0.076 Score=47.63 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=27.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
-||+|+|+ |.+|..++..+... ++.=..++|.
T Consensus 28 s~VlIvG~-GGLGs~va~~LA~a-GVG~i~lvD~ 59 (287)
T PRK08223 28 SRVAIAGL-GGVGGIHLLTLARL-GIGKFTIADF 59 (287)
T ss_pred CCEEEECC-CHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 58999998 99999999988764 7777778884
No 252
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.34 Score=45.63 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=71.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCCCCCCcccc--CCHHHHHhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV 110 (220)
.||+|+|. |+.|+.+++.+.+ .+.++.+ +|...... +. .++. ..|+.++ .+..+.+. ++|+|
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~-~G~~V~~-~D~~~~~~~~~~~~~l~----~~gi~~~~~~~~~~~~~------~~dlV 81 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVK-LGAKVTA-FDKKSEEELGEVSNELK----ELGVKLVLGENYLDKLD------GFDVI 81 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHH-CCCEEEE-ECCCCCccchHHHHHHH----hCCCEEEeCCCChHHhc------cCCEE
Confidence 48999996 9999999988876 4777654 67432111 11 1221 3455553 22233343 68988
Q ss_pred EEccC-chhHHHHHHHHHHCCCcEE--------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650 111 IDFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (220)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G~~vV--------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~ 173 (220)
| .|+ -....+.+..|.+.|++++ ||-||-+ + -..+-|..+-+..+.......| +|+.++.
T Consensus 82 V-~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~ 158 (458)
T PRK01710 82 F-KTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFS 158 (458)
T ss_pred E-ECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHH
Confidence 7 453 1122355666666666654 3334321 1 1122334444445555556677 4655543
Q ss_pred HHHHHhcCCCCCeEEEecc
Q 027650 174 QAAISASFHYKNVEIVESR 192 (220)
Q Consensus 174 ~~a~~~~~~~~diEIiE~H 192 (220)
.+. ... ..|+-|+|+=
T Consensus 159 ~~~-~~~--~~~~~VlE~~ 174 (458)
T PRK01710 159 NIE-EIK--EEDKVVLELS 174 (458)
T ss_pred HHh-hCC--CCCEEEEEcC
Confidence 222 221 2355555553
No 253
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.66 E-value=0.017 Score=51.87 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=58.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.+|+|+|+ |.+|+.+++.+....+.+-+.+++++. ..+..+...-...++.+ ++++++++. ++|+||-+|
T Consensus 126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVitaT 196 (304)
T PRK07340 126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTAT 196 (304)
T ss_pred CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEcc
Confidence 48999996 999999999998766677788888742 11222221000112233 578888885 799999666
Q ss_pred Cc-hhHHHHHHHHHHCCCcEE-EeC
Q 027650 115 DA-STVYDNVKQATAFGMRSV-VYV 137 (220)
Q Consensus 115 ~p-~~~~~~~~~al~~G~~vV-igT 137 (220)
+. +.+. ...++.|.++. ||.
T Consensus 197 ~s~~Pl~---~~~~~~g~hi~~iGs 218 (304)
T PRK07340 197 TSRTPVY---PEAARAGRLVVAVGA 218 (304)
T ss_pred CCCCcee---CccCCCCCEEEecCC
Confidence 43 3222 22368888886 454
No 254
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.17 Score=45.14 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCccc--cCCH-HHHHhccccCCCccE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV 109 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV 109 (220)
.++||+|+|. |-||+-+++.+... +..+ +-..|.......... .+|+.- ..+. .+.. ..+|+
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~------~lgv~d~~~~~~~~~~~------~~aD~ 67 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKEA-GLVVRIIGRDRSAATLKAAL------ELGVIDELTVAGLAEAA------AEADL 67 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHh------hcCcccccccchhhhhc------ccCCE
Confidence 4679999995 99999999998764 4433 222332210000111 122211 1222 2222 36899
Q ss_pred EEEccCchhHHHHHHHHHH-CCCc-EEEeCCCCCHHHHHHHHHHh
Q 027650 110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC 152 (220)
Q Consensus 110 VIDfT~p~~~~~~~~~al~-~G~~-vVigTtG~~~e~~~~L~~aA 152 (220)
||-.++.....+.++.... .... +|+.++..-..-.+.+++..
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 8866666666676665553 2222 44455555444445555554
No 255
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.3 Score=45.49 Aligned_cols=121 Identities=22% Similarity=0.209 Sum_probs=66.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhhcCCCCCCccc-cC-CHHHHHhccccCCCccE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPV-MS-DLTMVLGSISQSKARAV 109 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~----g~l~g~~~~~gv~v-~~-dl~~~l~~~~~~~~~DV 109 (220)
.+|+|+|+ |++|..+++.+.+ .+.++++ +|+... ... .++. ..|+.+ +. ..++.+. ++|+
T Consensus 6 k~v~iiG~-g~~G~~~A~~l~~-~G~~V~~-~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~~------~~d~ 71 (450)
T PRK14106 6 KKVLVVGA-GVSGLALAKFLKK-LGAKVIL-TDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFLE------GVDL 71 (450)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHhh------cCCE
Confidence 58999997 8899999998876 5888765 565321 111 2221 223333 22 2333332 7999
Q ss_pred EEEccCchhHHHHHHHHHHCCCcE--------------EEeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 110 VIDFTDASTVYDNVKQATAFGMRS--------------VVYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~v--------------VigTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
||..+......+.+..|.+.|+++ |||-||-+ --..+-|..+-+..+-++.+..| +|+.+.
T Consensus 72 vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~ 148 (450)
T PRK14106 72 VVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLI 148 (450)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHH
Confidence 886554333344555556666554 44555432 11223344444445555666666 555443
No 256
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=95.65 E-value=0.083 Score=46.68 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=54.1
Q ss_pred EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----CCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----PLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~----~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.|.|++|.+|+.+++.+.+..+..=|-++|..........+...+. ..++.-.+++++++. ++|+||...
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~------g~d~V~H~A 74 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE------GVDVVFHTA 74 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc------CCceEEEeC
Confidence 3799999999999999998765333345554221111111111000 011222446667775 799999864
Q ss_pred Cc-----------------hhHHHHHHHHHHCCCcEEEeCC
Q 027650 115 DA-----------------STVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 115 ~p-----------------~~~~~~~~~al~~G~~vVigTt 138 (220)
.+ ..+...+..|.++|+.-+|=|.
T Consensus 75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 21 1223466788888988665443
No 257
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.63 E-value=0.14 Score=44.40 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=25.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |.+|..+++.+... ++.=.-++|.
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~-GVg~i~LvD~ 43 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARS-GVGKLTLIDF 43 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHc-CCCEEEEECC
Confidence 458999998 99999999998764 6644456774
No 258
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.59 E-value=0.018 Score=45.93 Aligned_cols=127 Identities=14% Similarity=0.094 Sum_probs=65.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
|||+|+|++|++|+.++-.+...+-..=+..+|... .| .|+....... ...+.+..+..+.+. ++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~~------~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL-PSPVRITSGDYEALK------DADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS-TEEEEEEESSGGGGT------TESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc-ccccccccccccccc------cccEE
Confidence 699999999999999999887764433244677531 11 1222222110 122333334444443 79988
Q ss_pred EEccC-chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcC
Q 027650 111 IDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF 181 (220)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~ 181 (220)
|-... |..--..=...++.+.+++ .+-.++|.+.+-+ .-+++..| -++++.+++....+
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtN---Pvd~~t~~~~~~s~ 133 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTN---PVDVMTYVAQKYSG 133 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SS---SHHHHHHHHHHHHT
T ss_pred EEeccccccccccHHHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCC---cHHHHHHHHHHhhC
Confidence 84331 2110000111223333333 4566677777743 44555555 25566666655543
No 259
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.59 E-value=0.46 Score=45.02 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCC
Q 027650 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKA 106 (220)
Q Consensus 29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~ 106 (220)
..|.-.+.||.|+|+ |+.|+.+++.+.. .+.++. ++|++.. ...++. ...|+.++. +..+-+. +
T Consensus 9 ~~~~~~~~~v~v~G~-G~sG~a~a~~L~~-~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~~------~ 74 (473)
T PRK00141 9 ALPQELSGRVLVAGA-GVSGRGIAAMLSE-LGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQLD------S 74 (473)
T ss_pred hcccccCCeEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHhc------C
Confidence 445556678999996 9999999998875 466554 4675321 122222 134666643 2233343 6
Q ss_pred ccEEEEccC--chhHHHHHHHHHHCCCcE---------------------EEeCCCCC-H-HHHHHHHHHhhhcCceEEE
Q 027650 107 RAVVIDFTD--ASTVYDNVKQATAFGMRS---------------------VVYVPHIQ-L-ETVSALSAFCDKASMGCLI 161 (220)
Q Consensus 107 ~DVVIDfT~--p~~~~~~~~~al~~G~~v---------------------VigTtG~~-~-e~~~~L~~aA~~~~v~vvi 161 (220)
+|+|| .|+ |... +.+..|.+.|+++ +||-||-+ + -...-|..+-+..|.....
T Consensus 75 ~d~vV-~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~ 152 (473)
T PRK00141 75 FSLVV-TSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQA 152 (473)
T ss_pred CCEEE-eCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 89887 553 3322 3344445555433 34555532 1 1223344444555556666
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCCCeEEEecc
Q 027650 162 APTLSIGSILLQQAAISASFHYKNVEIVESR 192 (220)
Q Consensus 162 apNfS~Gv~ll~~~a~~~~~~~~diEIiE~H 192 (220)
..|+..... ..+. .....++=++|.-
T Consensus 153 ~Gnig~p~~--~~l~---~~~~~~~~V~E~s 178 (473)
T PRK00141 153 VGNIGVPVS--AALV---AQPRIDVLVAELS 178 (473)
T ss_pred eccCChhHH--HHHh---cCCCCCEEEEecC
Confidence 677544332 1111 1123466666764
No 260
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.58 E-value=0.21 Score=44.04 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=58.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhh-----hhcCCCCCCccc-----
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGM-----VCDMEQPLEIPV----- 90 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g~-----l~g~~~~~gv~v----- 90 (220)
+|.|+|. |++|+-.++++.. .++.=.-++|.+ ..|+.--+ +..+.....|..
T Consensus 32 ~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 32 HVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred cEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 7999998 9999999998875 466555566631 11221100 111111122222
Q ss_pred -cCCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEE
Q 027650 91 -MSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVV 135 (220)
Q Consensus 91 -~~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVi 135 (220)
-+++++++. .++|-|||+-..-.. .+.+.+|.++++++|.
T Consensus 110 t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs 151 (263)
T COG1179 110 TEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS 151 (263)
T ss_pred CHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence 145677776 489999998754333 6778899999999985
No 261
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.57 E-value=0.075 Score=48.58 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=78.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
.+|+|+|. |.||+.+++.+.. -++++++..++ ++... .+ ...|+.+ .++++++. .+|+|+-..+
T Consensus 17 KtVGIIG~-GsIG~amA~nL~d-~G~~ViV~~r~---~~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llLP 80 (335)
T PRK13403 17 KTVAVIGY-GSQGHAQAQNLRD-SGVEVVVGVRP---GKSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLLP 80 (335)
T ss_pred CEEEEEeE-cHHHHHHHHHHHH-CcCEEEEEECc---chhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeCC
Confidence 58999996 9999999999875 58999875443 12111 11 0224443 38999986 7999884433
Q ss_pred chhHHHHH----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEec
Q 027650 116 ASTVYDNV----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 191 (220)
Q Consensus 116 p~~~~~~~----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE~ 191 (220)
-+.....+ ...++.|. +++=.-||+-. ...|. --.++-|++.+-=++|-.+=+.+.+.. -.+.. +=.
T Consensus 81 d~~t~~V~~~eil~~MK~Ga-iL~f~hgfni~-~~~i~---pp~~vdv~mvaPKgpG~~vR~~y~~G~--Gvp~l--~av 151 (335)
T PRK13403 81 DEQQAHVYKAEVEENLREGQ-MLLFSHGFNIH-FGQIN---PPSYVDVAMVAPKSPGHLVRRVFQEGN--GVPAL--VAV 151 (335)
T ss_pred ChHHHHHHHHHHHhcCCCCC-EEEECCCccee-cCcee---CCCCCeEEEECCCCCChHHHHHHHcCC--CceeE--EEE
Confidence 22222222 22233444 33335577642 11111 123466664433377874444443211 12222 222
Q ss_pred cCCCCCCCCchhhHHHHHHh
Q 027650 192 RPNARMQLKSPTTSPTLVRS 211 (220)
Q Consensus 192 HH~~K~DaPSGTA~~~~~~~ 211 (220)
|. | +||.|.+.+..-
T Consensus 152 ~q----d-~sg~a~~~ala~ 166 (335)
T PRK13403 152 HQ----D-ATGTALHVALAY 166 (335)
T ss_pred EE----C-CCCcHHHHHHHH
Confidence 22 6 588888755443
No 262
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.55 E-value=0.12 Score=47.90 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=59.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v~-- 91 (220)
..||.|+|+ |.+|..+++.+... ++.=+.++|.+. .+ .|+| .+..+.....+..+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~-Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASA-GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHc-CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 358999998 99999999998764 665566777421 11 1111 01111111112222
Q ss_pred ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
.+.++++. ++|+|||++..-.. ...-..|.++|+|+|.|..
T Consensus 119 ~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 23445554 79999999865444 4445789999999997654
No 263
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.54 E-value=0.16 Score=47.60 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=61.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH---HHHhccccCCCccE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAV 109 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DV 109 (220)
.-||.|+|+ |..|..+++.+.+++ +++++|.+|.+.. ..+. ..|+|+..+.+ +.+.+ .++|.
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~~------~~gvpVlg~~~dl~~~i~~----~~vd~ 194 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ARTG------VRGVPVLGKLDDLEELIRE----GEVDE 194 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--cccc------cCCCCccCCHHHHHHHHHh----cCCCE
Confidence 358999997 999999999998755 5899999985321 1111 23667765544 44443 57897
Q ss_pred EEEccCc---hhHHHHHHHHHHCCCcEEEeCCCC
Q 027650 110 VIDFTDA---STVYDNVKQATAFGMRSVVYVPHI 140 (220)
Q Consensus 110 VIDfT~p---~~~~~~~~~al~~G~~vVigTtG~ 140 (220)
||...+. +...+.+..|.+.|+.+.+ -|.+
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~v-vP~~ 227 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRL-VPDL 227 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEE-eCch
Confidence 7744322 2335667788889998876 3443
No 264
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.54 E-value=0.066 Score=46.76 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=27.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+||.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-CCEEEEEEec
Confidence 48999999999999999998865 6788776543
No 265
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.18 Score=43.26 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=70.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc---c-CCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M-SDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v---~-~dl~~~l~~~~~~~~~DVVI 111 (220)
|+++|+|+ |++|..+++.+.+ .+.+++.+-+.. ....+... ...+..+ . ++.+.+ .+.+- .++|++|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~-~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~~L-~~agi-~~aD~vv 71 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSE-EGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDEDVL-EEAGI-DDADAVV 71 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHh-CCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHHHH-HhcCC-CcCCEEE
Confidence 68999998 9999999999876 477787655421 11122111 0122222 1 233333 22111 2789888
Q ss_pred EccCchhHHHH-HHHHHH-CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHH
Q 027650 112 DFTDASTVYDN-VKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (220)
Q Consensus 112 DfT~p~~~~~~-~~~al~-~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~ 174 (220)
-.|.-+...-. ...+++ .|++-|+.+. -+++..+.+ ++.|+-.+++|-...|-.+...
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~-~~~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~ 131 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARA-RNPEHEKVL----EKLGADVIISPEKLAAKRLARL 131 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEe-cCHHHHHHH----HHcCCcEEECHHHHHHHHHHHH
Confidence 56655444322 234444 7899888654 233332233 3345778888887777765443
No 266
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.47 Score=44.33 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCcccc-C--CHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S--DLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~--dl~~~l~~~~~~~~~DVV 110 (220)
+.||.|+|. |+.|...++.+....+ .++. +.|....-.....+. . |+.++ . +.+ .+. ++|+|
T Consensus 7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l~----~-g~~~~~g~~~~~-~~~------~~d~v 72 (438)
T PRK04663 7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQLP----E-DVELHSGGWNLE-WLL------EADLV 72 (438)
T ss_pred CceEEEEec-cHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHhh----c-CCEEEeCCCChH-Hhc------cCCEE
Confidence 468999997 9999999999887765 7776 477432111111221 2 55553 2 323 333 68977
Q ss_pred EEccC--chhHHHHHHHHHHCCCcEE--------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 111 IDFTD--ASTVYDNVKQATAFGMRSV--------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 111 IDfT~--p~~~~~~~~~al~~G~~vV--------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
| .|+ |.. .+.+..|.++|++++ ||-||-+ + -...-|..+-++.|....+..|+ |+.++
T Consensus 73 V-~SpgI~~~-~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~ 148 (438)
T PRK04663 73 V-TNPGIALA-TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPAL 148 (438)
T ss_pred E-ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHH
Confidence 7 453 332 344556666666653 4555432 1 12233445555566666677774 55443
Q ss_pred HHHHHHhcCCCCCeEEEecc
Q 027650 173 QQAAISASFHYKNVEIVESR 192 (220)
Q Consensus 173 ~~~a~~~~~~~~diEIiE~H 192 (220)
.. +. ...|+-|+|.=
T Consensus 149 ~~----~~-~~~~~~V~E~s 163 (438)
T PRK04663 149 DL----LE-QDAELYVLELS 163 (438)
T ss_pred hh----hc-CCCCEEEEEcC
Confidence 21 11 12366666654
No 267
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.52 E-value=0.19 Score=45.08 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=66.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~-l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.||.|+|+ |.+|.++++.+.. .++.=+.++|.+... .|++. +.-..+..|-+-.....+-+.+ -+++|-|+.
T Consensus 20 s~VLIvG~-gGLG~EiaKnLal-aGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e----LNp~V~V~~ 93 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLIL-AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE----LNPYVPVTV 93 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH----HCCCCEEEE
Confidence 58999998 9999999999875 588888889864211 11111 0000000011111111112222 367776654
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
-......+.+ .+..+|+-+.. +.+...+|.++|+++++|++.+.-+.
T Consensus 94 ~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 94 STGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred EeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 3322222222 23456665543 66777888999999999988765433
No 268
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.51 E-value=0.12 Score=46.60 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.++||.|.|++|.+|+.+++.+.+. +.+++++.
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d 46 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD 46 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence 4579999999999999999999875 67888664
No 269
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.13 Score=47.07 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=75.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC------cchhhhhcCC---------------CCCCcc----c-
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG------EDIGMVCDME---------------QPLEIP----V- 90 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g------~d~g~l~g~~---------------~~~gv~----v- 90 (220)
-|.|+|| |++|+-++..+.. .|++=.-++|.+... .....+...+ .-+.+. .
T Consensus 76 yVVVVG~-GgVGSwv~nmL~R-SG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~ 153 (430)
T KOG2018|consen 76 YVVVVGA-GGVGSWVANMLLR-SGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLW 153 (430)
T ss_pred EEEEEec-CchhHHHHHHHHH-hcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhc
Confidence 4899998 9999999988775 588888888842110 0001111100 000110 1
Q ss_pred -cCCHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCCcEEEeCCC---------------------CCHHHHHH
Q 027650 91 -MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPH---------------------IQLETVSA 147 (220)
Q Consensus 91 -~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTtG---------------------~~~e~~~~ 147 (220)
.++-++++. .+||.|||+-. -+.-.+.+.+|-.+|++|+..|-. ++..-..+
T Consensus 154 ~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrr 228 (430)
T KOG2018|consen 154 TSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRR 228 (430)
T ss_pred CCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHH
Confidence 234556664 48999999864 555579999999999999965421 12234455
Q ss_pred HHHHhhhcCceEEEcC
Q 027650 148 LSAFCDKASMGCLIAP 163 (220)
Q Consensus 148 L~~aA~~~~v~vviap 163 (220)
|+..--..|+|+++|.
T Consensus 229 Lrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 229 LRKRGIEGGIPVVFSL 244 (430)
T ss_pred HHHhccccCCceEEec
Confidence 6655556899999864
No 270
>PLN02214 cinnamoyl-CoA reductase
Probab=95.48 E-value=0.13 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
.+++|.|.|++|.+|+.+++.+.+. +.++++...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r 42 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVR 42 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeC
Confidence 3568999999999999999998764 788888654
No 271
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.48 E-value=0.045 Score=49.44 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcc--hhhhhcC-CCCCCccccCCHHHHHhccccCCCc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGED--IGMVCDM-EQPLEIPVMSDLTMVLGSISQSKAR 107 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d--~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (220)
..+||+|+|+ |.||..++-.+....-.+ +.++|.+. .|.. ....... +....+..++|++ .+. ++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~------~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK------DS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC------CC
Confidence 3469999998 999999988776653256 66888632 1211 1111100 0012233357887 444 89
Q ss_pred cEEEEcc
Q 027650 108 AVVIDFT 114 (220)
Q Consensus 108 DVVIDfT 114 (220)
|+||...
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9888543
No 272
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.47 E-value=0.13 Score=46.89 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=63.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
-.+|||+|. |++|+.+++.+... ++++.+ +|+.. .++... ..++.-.+++++++. .+|+|+-.+
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~af-gm~v~~-~d~~~-~~~~~~------~~~~~~~~~Ld~lL~------~sDiv~lh~ 205 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAF-GMKVIG-YDPYS-PRERAG------VDGVVGVDSLDELLA------EADILTLHL 205 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCeEEE-ECCCC-chhhhc------cccceecccHHHHHh------hCCEEEEcC
Confidence 468999996 99999999988765 899986 56521 222211 223444678999997 799888554
Q ss_pred C--chhH-H--HHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce
Q 027650 115 D--ASTV-Y--DNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG 158 (220)
Q Consensus 115 ~--p~~~-~--~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~ 158 (220)
+ |+.. . +.....++.|. ++|-+- |---++ +.|.++-++..+.
T Consensus 206 PlT~eT~g~i~~~~~a~MK~ga-ilIN~aRG~vVde-~aL~~AL~~G~i~ 253 (324)
T COG0111 206 PLTPETRGLINAEELAKMKPGA-ILINAARGGVVDE-DALLAALDSGKIA 253 (324)
T ss_pred CCCcchhcccCHHHHhhCCCCe-EEEECCCcceecH-HHHHHHHHcCCcc
Confidence 3 2221 1 22223344555 666555 432222 4455555554443
No 273
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.45 E-value=0.047 Score=48.79 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=28.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
|.||.|.|++|.+|+.+++.+.+. +.+++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~-g~~~v~~~~~ 34 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINE-TSDAVVVVDK 34 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHc-CCCEEEEEec
Confidence 569999999999999999999874 6666666664
No 274
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.44 E-value=0.098 Score=45.94 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=52.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-----C--CCCCccccCCHHHHHhccccCCC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-----E--QPLEIPVMSDLTMVLGSISQSKA 106 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~-----~--~~~gv~v~~dl~~~l~~~~~~~~ 106 (220)
|||+|+|+ |.||..++..+.+. +.++..+. +. .....+. |. . ........++.+++.. .
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~~-r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFLV-RP---KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG------P 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHC-CCceEEEe-cH---HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC------C
Confidence 58999997 99999999988764 66655443 31 1111110 00 0 0011123455655543 7
Q ss_pred ccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCH
Q 027650 107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL 142 (220)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~ 142 (220)
+|++|.++.+..+.+.+... +..+..+|+-..|+..
T Consensus 69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 99988776655555544433 3345555544458753
No 275
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.43 E-value=0.32 Score=46.24 Aligned_cols=146 Identities=21% Similarity=0.151 Sum_probs=81.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI 111 (220)
++||+|+|- |+-|..+++.+.+. +.++. ++| +... ........ ...++.+.. ...+-+ ..+|+||
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~-G~~v~-v~D~~~~~-~~~~~~~~--~~~~i~~~~g~~~~~~~------~~~d~vV 74 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKL-GAEVT-VSDDRPAP-EGLAAQPL--LLEGIEVELGSHDDEDL------AEFDLVV 74 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHC-CCeEE-EEcCCCCc-cchhhhhh--hccCceeecCccchhcc------ccCCEEE
Confidence 679999995 99999999998764 66665 455 3221 10111100 022333321 112222 3789888
Q ss_pred EccC--chhHHHHHHHHHHCCCcEE---------------EeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 112 DFTD--ASTVYDNVKQATAFGMRSV---------------VYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 112 DfT~--p~~~~~~~~~al~~G~~vV---------------igTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
.++ |..+ +.+..|.+.|++++ |+-||-+ -.....|..+.++.|.+..+..|...++ +
T Consensus 75 -~SPGi~~~~-p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--l 150 (448)
T COG0771 75 -KSPGIPPTH-PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--L 150 (448)
T ss_pred -ECCCCCCCC-HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--H
Confidence 553 2222 24455555555443 3444432 2344667888899999999999977776 4
Q ss_pred HHHHHHhcCCCCCeEEEeccCCCCCCC
Q 027650 173 QQAAISASFHYKNVEIVESRPNARMQL 199 (220)
Q Consensus 173 ~~~a~~~~~~~~diEIiE~HH~~K~Da 199 (220)
..+. .. ..+|+-++|.=-.+=.+.
T Consensus 151 ~~~~-~~--~~~d~~VlElSSfQL~~~ 174 (448)
T COG0771 151 ELLE-QA--EPADVYVLELSSFQLETT 174 (448)
T ss_pred Hhhc-cc--CCCCEEEEEccccccccC
Confidence 4332 11 235666676544443333
No 276
>PRK05086 malate dehydrogenase; Provisional
Probab=95.42 E-value=0.17 Score=45.59 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~ 69 (220)
|||+|+|++|++|+.++..+.. .+....+.++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~ 35 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI 35 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence 6999999999999999987754 344444556664
No 277
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.40 E-value=0.2 Score=47.55 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=57.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH---HHHhccccCCCccE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAV 109 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DV 109 (220)
.-||.|+|+ |..|+.+++.+.+++ +++++|.+|.+..+ ..++|++.+.+ +.+.+ .++|-
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----------g~~VpvlG~~~dL~~~v~~----~~Ide 206 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----------GVSNDWAGNLQQLVEDAKA----GKIHN 206 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----------cCCCCcCCCHHHHHHHHHh----CCCCE
Confidence 357999997 999999999998776 58999999853210 12344454544 44443 57897
Q ss_pred EEEccCch----hHHHHHHHHHHCCCcEEE
Q 027650 110 VIDFTDAS----TVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 110 VIDfT~p~----~~~~~~~~al~~G~~vVi 135 (220)
|| .+.|. ...+.+..|.+.|+++.+
T Consensus 207 Vi-IAip~~~~~~l~ell~~~~~~~v~V~i 235 (463)
T PRK10124 207 VY-IAMSMCDGARVKKLVRQLADTTCSVLL 235 (463)
T ss_pred EE-EeCCCcchHHHHHHHHHHHHcCCeEEE
Confidence 77 34432 334566788889998876
No 278
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.40 E-value=0.091 Score=51.64 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEE
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEV 63 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL 63 (220)
...+|||.|.|++|.+|+.+++.+... +.++
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~-g~~v 407 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQ-GIAY 407 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhC-CCeE
Confidence 345689999999999999999988764 6666
No 279
>PRK12320 hypothetical protein; Provisional
Probab=95.38 E-value=0.16 Score=50.86 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=51.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|||.|+|++|.+|+.+++.+.+ .+.+++++........+.+ ++. ..++.-. .+.+++. ++|+||.+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~~~~~~~ve~v----~~Dl~d~-~l~~al~------~~D~VIHLA 68 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPHDALDPRVDYV----CASLRNP-VLQELAG------EADAVIHLA 68 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChhhcccCCceEE----EccCCCH-HHHHHhc------CCCEEEEcC
Confidence 5899999999999999998876 4788887553211000000 000 0011000 1334443 689999886
Q ss_pred Cch----------hHHHHHHHHHHCCCcEEE
Q 027650 115 DAS----------TVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 115 ~p~----------~~~~~~~~al~~G~~vVi 135 (220)
... .....+..|.+.|+.+|.
T Consensus 69 a~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~ 99 (699)
T PRK12320 69 PVDTSAPGGVGITGLAHVANAAARAGARLLF 99 (699)
T ss_pred ccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence 432 122345677788887764
No 280
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.36 E-value=0.28 Score=41.85 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=29.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
++||.|+|++|.+|+.+++.+.+. +.+++++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVRD 50 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEecC
Confidence 579999999999999999998774 7888877643
No 281
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.36 E-value=0.028 Score=50.56 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=54.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC-CCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~-~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.+|+|+|+ |.||+.+++.+....+.+=+-++++.. ..+.++... .. ...+.+.+++++++. ++|+||-.
T Consensus 126 ~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISCA 196 (314)
T ss_pred ceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEEe
Confidence 48999996 999999998777644555556777642 122222211 00 113566788998885 79998855
Q ss_pred cCchhHHHHH-HHHHHCCCcEE
Q 027650 114 TDASTVYDNV-KQATAFGMRSV 134 (220)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV 134 (220)
|+.. .+.+ ...++.|.++.
T Consensus 197 T~s~--~pvl~~~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRGEWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecHHHcCCCCEEE
Confidence 5432 1212 24568888665
No 282
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.11 Score=50.02 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
-||+|+|+ |.||+.++..+... +++++ ++|+
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~a-G~~V~-l~D~ 38 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQA-GHTVL-LYDA 38 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 47999997 99999999988754 88887 5675
No 283
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.33 E-value=0.094 Score=48.68 Aligned_cols=127 Identities=18% Similarity=0.292 Sum_probs=65.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc----CCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI 111 (220)
|||.|+|+ |++|+.+++.+.. .+.+++ ++|++. .....+.. ..++++. .+.+.+... . -.++|.||
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~~---~~~~~~~~gd~~~~~~l~~~-~-~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQD---RLDVRTVVGNGSSPDVLREA-G-AEDADLLI 70 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHHh---hcCEEEEEeCCCCHHHHHHc-C-CCcCCEEE
Confidence 58999998 9999999998876 478887 455421 11222210 1222221 122222110 0 03789888
Q ss_pred EccCchhHHH-HHHHHHHC-CCcEEEeCCCCCHHHHHHHHHHh--hhcCceEEEcCCCcHHHHHHHH
Q 027650 112 DFTDASTVYD-NVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQ 174 (220)
Q Consensus 112 DfT~p~~~~~-~~~~al~~-G~~vVigTtG~~~e~~~~L~~aA--~~~~v~vviapNfS~Gv~ll~~ 174 (220)
-++..+.... ....+.+. +.+-++..+.- .+. .+..++. ++.|+-.+++|..-.+-.+...
T Consensus 71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~-~~~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~ 135 (453)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGAPTTIARVRN-PEY-AEYDKLFSKEALGIDLLISPELLVAREIARL 135 (453)
T ss_pred EecCChHHHHHHHHHHHHhcCCCeEEEEECC-ccc-cchhhhhhhhcCCccEEECHHHHHHHHHHHH
Confidence 5554433322 22344443 54444433211 111 1223332 5568888998887776655443
No 284
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=95.31 E-value=0.13 Score=44.77 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=23.7
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (220)
|.|.|++|.+|+.+++.+.+. +. ++++ +++
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence 579999999999999999875 44 5654 453
No 285
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=95.30 E-value=0.087 Score=48.34 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCC------
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------ 83 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~---------------------~~~eLvg~vd~--~~~g~d~g~l~g~~------ 83 (220)
.+|+||+|+|- |+-.+.++.-+... .|.|+|+.+|. .+.|+|+.+..-..
T Consensus 3 ~~~vrv~iiG~-Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 3 TTMVRVAIIGV-GNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred cceEEEEEEec-cchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence 57899999996 88888787665432 26789999984 45677776543210
Q ss_pred -----CCCCccc---------cCCHHHHHhc---cccCCCccEE-----------EEccC---chhHHHHHHHHHHCCCc
Q 027650 84 -----QPLEIPV---------MSDLTMVLGS---ISQSKARAVV-----------IDFTD---ASTVYDNVKQATAFGMR 132 (220)
Q Consensus 84 -----~~~gv~v---------~~dl~~~l~~---~~~~~~~DVV-----------IDfT~---p~~~~~~~~~al~~G~~ 132 (220)
...|+.+ ...+.+.+.. -.+....|++ +.|.+ ..+.+-++..+++.|++
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence 0111111 0112222220 0011123332 22222 23456678899999999
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650 133 SVVYVPHIQLETVSALSAFCDKASMGCL 160 (220)
Q Consensus 133 vVigTtG~~~e~~~~L~~aA~~~~v~vv 160 (220)
.|=.+|-+...+ ..+.+.++++|+|++
T Consensus 162 fvN~~P~~iA~d-P~~~~~fee~g~pi~ 188 (362)
T COG1260 162 FVNAIPVFIASD-PAWVELFEEKGLPIA 188 (362)
T ss_pred eecccCccccCC-HHHHHHHHHcCCcee
Confidence 999998542211 236777888888887
No 286
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.29 E-value=0.17 Score=45.54 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
...+|+|+|. |+||+.+++.+.. =++++.+ +|+.. .+ .++ ..+.++++++. ++|+|+.
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~a-fG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~ 179 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKA-FGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLI 179 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEE
Confidence 3469999996 9999999997764 4898875 45431 11 111 12568999986 7999884
Q ss_pred cc
Q 027650 113 FT 114 (220)
Q Consensus 113 fT 114 (220)
..
T Consensus 180 ~l 181 (303)
T PRK06436 180 SL 181 (303)
T ss_pred CC
Confidence 43
No 287
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.28 E-value=0.048 Score=50.58 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=61.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CCCCC----CccccCCHHHHHhccccCCCccE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV 109 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~DV 109 (220)
-+++|+|+ |.+++.+++++.. .|+++=+-+++++. ..+..+.. +...+ .+.+.++.++++. ++||
T Consensus 156 ~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI 226 (379)
T PRK06199 156 KVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI 226 (379)
T ss_pred CEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence 48999996 9999999999887 56788888998742 11111110 00111 2566899999986 7999
Q ss_pred EEEccCchh----HHHHH-HHHHHCCCcEE-EeCCCCC
Q 027650 110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHIQ 141 (220)
Q Consensus 110 VIDfT~p~~----~~~~~-~~al~~G~~vV-igTtG~~ 141 (220)
|+=+|+... ..+.+ ...++.|.|+. +|+-.++
T Consensus 227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~eld 264 (379)
T PRK06199 227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRID 264 (379)
T ss_pred EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccCC
Confidence 885453111 11222 33567898886 4443344
No 288
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.25 E-value=0.59 Score=43.47 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=75.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g-~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVI 111 (220)
.+|.|+|+ |++|...++.+.+ .+.++++ .|.... . .....+. ..|+.++ .+..+++. ..+|+||
T Consensus 6 k~v~v~G~-g~~G~s~a~~l~~-~G~~V~~-~d~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~-----~~~d~vV 73 (447)
T PRK02472 6 KKVLVLGL-AKSGYAAAKLLHK-LGANVTV-NDGKPFSENPEAQELL----EEGIKVICGSHPLELLD-----EDFDLMV 73 (447)
T ss_pred CEEEEEee-CHHHHHHHHHHHH-CCCEEEE-EcCCCccchhHHHHHH----hcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence 47999998 8899999888775 5888776 464221 1 1112222 3355443 23444443 1489887
Q ss_pred Ecc-CchhHHHHHHHHHHCCCcEE--------------EeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHH
Q 027650 112 DFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (220)
Q Consensus 112 DfT-~p~~~~~~~~~al~~G~~vV--------------igTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~ 174 (220)
--. .|.. .+.+..|.+.|++++ ||-||-+ --...-|..+-+..+.......|+ |..+..
T Consensus 74 ~s~gi~~~-~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni--g~p~~~- 149 (447)
T PRK02472 74 KNPGIPYT-NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI--GYPASE- 149 (447)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc--ChhhHH-
Confidence 332 1322 345666677777764 4445432 122234455555556666666774 443322
Q ss_pred HHHHhcCCCCCeEEEeccCCC
Q 027650 175 AAISASFHYKNVEIVESRPNA 195 (220)
Q Consensus 175 ~a~~~~~~~~diEIiE~HH~~ 195 (220)
+.... ...|+-|+|.=+.+
T Consensus 150 ~~~~~--~~~~~~V~E~ss~~ 168 (447)
T PRK02472 150 VAQKA--TADDTLVMELSSFQ 168 (447)
T ss_pred HHhcC--CCCCEEEEEcCchh
Confidence 11111 12477778874433
No 289
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.23 E-value=0.2 Score=44.44 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=55.0
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE-E
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-V 110 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-V 110 (220)
+..+.++.|.|||+++|+++++.+.. .+..|+-+..+. +.+.++. .++++... ..+++ -
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~-~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~ 62 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLAR-RGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIP 62 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEE
Confidence 34556899999999999999999886 478888665432 1122221 12222111 13442 4
Q ss_pred EEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650 111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH 139 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~--G~~vVigTtG 139 (220)
+|.+.|+............ .+.++|-.-|
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 5778888877766666666 5777765554
No 290
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.15 E-value=0.11 Score=48.93 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=53.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
--+|+|+|+ |.+|+.+++.+... +.+++. +|.+.. ...... ..|+.+. ++++++. .+|+||++|
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~-Ga~ViV-~d~d~~--R~~~A~----~~G~~~~-~~~e~v~------~aDVVI~at 265 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQ-GARVIV-TEVDPI--CALQAA----MEGYEVM-TMEEAVK------EGDIFVTTT 265 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECChh--hHHHHH----hcCCEEc-cHHHHHc------CCCEEEECC
Confidence 358999997 99999999987754 777654 665321 111111 2344332 4566664 789999988
Q ss_pred CchhHHHH-HHHHHHCCCcEE-EeC
Q 027650 115 DASTVYDN-VKQATAFGMRSV-VYV 137 (220)
Q Consensus 115 ~p~~~~~~-~~~al~~G~~vV-igT 137 (220)
........ ...+++.|.-++ +|-
T Consensus 266 G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 65444433 355666665554 453
No 291
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=95.14 E-value=0.038 Score=51.07 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=81.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhc-CCCCC------C-ccccC-----CHHHHH
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL------E-IPVMS-----DLTMVL 98 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~------g-v~v~~-----dl~~~l 98 (220)
..-+.|.||+|-.|+.+++.+.. .+++.+.-+-.+. +.+.+++. ++.+. . +.+.+ +++++.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~---~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema 81 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNE---KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA 81 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCH---HHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH
Confidence 46799999999999999998765 3455553322211 11222111 00011 1 22222 366665
Q ss_pred hccccCCCccEEEEccCchhH--HHHHHHHHHCCCcEE--EeCCCCCHHHHHHHHHHhhhcCceEEEcCCC-----cHHH
Q 027650 99 GSISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGS 169 (220)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vV--igTtG~~~e~~~~L~~aA~~~~v~vviapNf-----S~Gv 169 (220)
. .+-|||.+.-|--+ ...+++|+++|.+-| .|-|-|-+--..+-.+.|+++|+.|+-+-+| -+|+
T Consensus 82 k------~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv 155 (423)
T KOG2733|consen 82 K------QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGV 155 (423)
T ss_pred h------hhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCcccee
Confidence 4 68899988777655 477899999999987 4444454444455678899999999977664 4677
Q ss_pred HHHH
Q 027650 170 ILLQ 173 (220)
Q Consensus 170 ~ll~ 173 (220)
+.++
T Consensus 156 ~f~~ 159 (423)
T KOG2733|consen 156 MFLR 159 (423)
T ss_pred eeeh
Confidence 5544
No 292
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=95.14 E-value=0.086 Score=48.38 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC--HHHHHhccccCCCccEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV 110 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVV 110 (220)
+...+|.|+|++|..|+..+..+... ++..+.++.++. ..+.-+-+|. ..+.-|.+ ..+.+.+.. ..++|+|
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~-~~~~v~t~~s~e-~~~l~k~lGA---d~vvdy~~~~~~e~~kk~~-~~~~DvV 229 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHA-GAIKVVTACSKE-KLELVKKLGA---DEVVDYKDENVVELIKKYT-GKGVDVV 229 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhc-CCcEEEEEcccc-hHHHHHHcCC---cEeecCCCHHHHHHHHhhc-CCCccEE
Confidence 33468999999999999999877665 444444444321 2333332331 12222444 333333100 2469999
Q ss_pred EEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650 111 IDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTtG 139 (220)
+||-...............|...++++.|
T Consensus 230 lD~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 230 LDCVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred EECCCCCccccchhhhccCCceEEEEecc
Confidence 99976655555555556666666767664
No 293
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.13 E-value=0.24 Score=45.47 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=58.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v~-- 91 (220)
..||.|+|+ |.+|..+++.+.. .++.=..++|.+. .+ .|+| .+..+.....+..+
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAG-AGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 358999998 9999999998875 5777777888531 01 1111 01011111112211
Q ss_pred ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
++..+.+. ++|+|||++..-.. .-.-..|.++++|+|.|-.
T Consensus 106 ~i~~~~~~~~~~------~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 106 RLTWSNALDELR------DADVILDGSDNFDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 12234554 79999999854444 3455788999999997643
No 294
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=95.10 E-value=0.3 Score=39.64 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=52.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccC
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD 115 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~ 115 (220)
++.|+|+ |..|+.+++.+.+ .+++++|.+|.+... .+. .-.|+|++.+.+++.... .+.+ +++....
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~-~g~~vvgfid~~~~~--~~~-----~i~g~pvlg~~~~l~~~~---~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAED-SGWEIVGFLDDNPAL--QGT-----SVDGLPVLGGDEDLLRYP---PDEVDLVVAIGD 68 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEcCCccc--cCc-----ccCCccEECCHHHHhhhc---ccccEEEEEcCC
Confidence 5899997 9999999999875 589999999864210 111 123677776665543210 1234 4443334
Q ss_pred chhHHHHHHHHHHCCCcE
Q 027650 116 ASTVYDNVKQATAFGMRS 133 (220)
Q Consensus 116 p~~~~~~~~~al~~G~~v 133 (220)
+....+....+.+.+..+
T Consensus 69 ~~~~~~i~~~l~~~g~~~ 86 (201)
T TIGR03570 69 NKLRRRLFEKLKAKGYRF 86 (201)
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 444456666666666544
No 295
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.17 Score=46.16 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=79.4
Q ss_pred ccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC---HHHHHhcccc
Q 027650 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQ 103 (220)
Q Consensus 27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d---l~~~l~~~~~ 103 (220)
..++......||.+.| +|-.|++++-.+.. =++|++++ |+ +.+.++-.++.. .-|.-..| +.+++++
T Consensus 4 igt~~~~~a~kvmLLG-SGELGKEvaIe~QR-LG~eViAV-Dr-Y~~APAmqVAhr---s~Vi~MlD~~al~avv~r--- 73 (394)
T COG0027 4 IGTPLRPQATKVMLLG-SGELGKEVAIEAQR-LGVEVIAV-DR-YANAPAMQVAHR---SYVIDMLDGDALRAVVER--- 73 (394)
T ss_pred ccCCCCCCCeEEEEec-CCccchHHHHHHHh-cCCEEEEe-cC-cCCChhhhhhhh---eeeeeccCHHHHHHHHHh---
Confidence 4566667778999999 59999999877654 59999974 54 222333333321 11111233 4455554
Q ss_pred CCCccEEEEccCchhH-HHHHHHHHHCCCcEEEe------------------------CCCC-CHHHHHHHHHHhhhcCc
Q 027650 104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY------------------------VPHI-QLETVSALSAFCDKASM 157 (220)
Q Consensus 104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig------------------------TtG~-~~e~~~~L~~aA~~~~v 157 (220)
.+||.+| .--++. .+.+...-+.|.+||=. |+.+ -.+..+++.+++++-|.
T Consensus 74 -ekPd~IV--pEiEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGf 150 (394)
T COG0027 74 -EKPDYIV--PEIEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGF 150 (394)
T ss_pred -hCCCeee--ehhhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCC
Confidence 5899877 222222 35555666777776621 0111 12345678999999999
Q ss_pred eEEEcCCCcH
Q 027650 158 GCLIAPTLSI 167 (220)
Q Consensus 158 ~vviapNfS~ 167 (220)
|+++.|-||-
T Consensus 151 PcvvKPvMSS 160 (394)
T COG0027 151 PCVVKPVMSS 160 (394)
T ss_pred Ceeccccccc
Confidence 9999999875
No 296
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.08 E-value=0.22 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=27.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
..||+|+|+ |.||..++..+.. .++.=+-++|.+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 358999998 9999999998876 477545577854
No 297
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.08 E-value=0.19 Score=45.32 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=41.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.+|+|+|. |+||+.+++.+... |+++.+ +++.. +... +.. ...-..++++++. ++|+|+..
T Consensus 137 ~tvgIvG~-G~IG~~vA~~l~af-G~~V~~-~~~~~--~~~~---~~~---~~~~~~~l~e~l~------~aDvvv~~ 197 (312)
T PRK15469 137 FTIGILGA-GVLGSKVAQSLQTW-GFPLRC-WSRSR--KSWP---GVQ---SFAGREELSAFLS------QTRVLINL 197 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EeCCC--CCCC---Cce---eecccccHHHHHh------cCCEEEEC
Confidence 58999996 99999999998864 898885 56421 1100 100 0111458899986 79998843
No 298
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.06 E-value=0.12 Score=42.76 Aligned_cols=148 Identities=11% Similarity=0.131 Sum_probs=77.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
..+|+|+|+ |..|+.++..+.. .+++++-...+.....+..+ ..|..+ .+++|+.. .+|+|+ .-
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrD-SG~~V~Vglr~~s~s~~~A~------~~Gf~v-~~~~eAv~------~aDvV~-~L 67 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRD-SGVNVIVGLREGSASWEKAK------ADGFEV-MSVAEAVK------KADVVM-LL 67 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHH-CC-EEEEEE-TTCHHHHHHH------HTT-EC-CEHHHHHH------C-SEEE-E-
T ss_pred CCEEEEECC-ChHHHHHHHHHHh-CCCCEEEEecCCCcCHHHHH------HCCCee-ccHHHHHh------hCCEEE-Ee
Confidence 358999997 9999999999876 58888766654321111111 234444 37777775 799988 44
Q ss_pred CchhH-----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHHHHHHHHHHHhcCCCCCeEE
Q 027650 115 DASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSILLQQAAISASFHYKNVEI 188 (220)
Q Consensus 115 ~p~~~-----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv~ll~~~a~~~~~~~~diEI 188 (220)
.|+.. .+.+...++.|..++. ..||+-- ...|.- ..++-++ ++|. ++|..+=+.+.+ .+-.+-.=-
T Consensus 68 ~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGfni~-~~~i~p---p~~vdV~mvAPK-gpG~~vR~~y~~--G~Gvp~l~A 139 (165)
T PF07991_consen 68 LPDEVQPEVYEEEIAPNLKPGATLVF-AHGFNIH-YGLIKP---PKDVDVIMVAPK-GPGHLVRREYVE--GRGVPALIA 139 (165)
T ss_dssp S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHHH-CTTS------TTSEEEEEEES-SSCHHHHHHHHC--CTS--EEEE
T ss_pred CChHHHHHHHHHHHHhhCCCCCEEEe-CCcchhh-cCcccC---CCCCeEEEEecC-CCChHHHHHHHc--CCCceEEEE
Confidence 44433 2555667888887775 5687642 122221 2335555 5566 788844333332 111233322
Q ss_pred EeccCCCCCCCCchhhHHHHHHhhh
Q 027650 189 VESRPNARMQLKSPTTSPTLVRSTT 213 (220)
Q Consensus 189 iE~HH~~K~DaPSGTA~~~~~~~~~ 213 (220)
++ .| +||.|+++...-++
T Consensus 140 V~------qD-~sg~A~~~ala~A~ 157 (165)
T PF07991_consen 140 VH------QD-ASGKAKELALAYAK 157 (165)
T ss_dssp EE------E--SSS-HHHHHHHHHH
T ss_pred EE------EC-CCchHHHHHHHHHH
Confidence 33 46 58999986665443
No 299
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.04 E-value=0.18 Score=45.02 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=52.8
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCc
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (220)
+.+|||+|+|+ |.||..++..+.+. +.++..+..... .|.......+-.....+.++++.++ . ..+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~-g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~ 73 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARA-GFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPC 73 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCC
Confidence 34579999997 99999999888764 666665443210 1111000000000001223444443 2 368
Q ss_pred cEEEEccCchhHH---HHHHHHHHCCCcEEEeCCCCCH
Q 027650 108 AVVIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQL 142 (220)
Q Consensus 108 DVVIDfT~p~~~~---~~~~~al~~G~~vVigTtG~~~ 142 (220)
|+||-++...... +.+...+..+..+|.-.-|+..
T Consensus 74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 74 DWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred CEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 9988665544333 3333444445556655558764
No 300
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.04 E-value=0.061 Score=48.29 Aligned_cols=91 Identities=7% Similarity=0.016 Sum_probs=60.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
-+++|+|+ |..|+.+++++.....++=+-+++++. ..+..+.. +.+.++ +.+.+++++++. ++|||+=
T Consensus 118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~t 188 (301)
T PRK06407 118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAALR------DADTITS 188 (301)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 58999996 999999999999888888888888642 12222211 011223 455789999986 8999995
Q ss_pred ccCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650 113 FTDASTVYDNV-KQATAFGMRSV-VYV 137 (220)
Q Consensus 113 fT~p~~~~~~~-~~al~~G~~vV-igT 137 (220)
.|+ ... +.+ ...++.|.|+. ||.
T Consensus 189 aT~-s~~-P~~~~~~l~pg~hV~aiGs 213 (301)
T PRK06407 189 ITN-SDT-PIFNRKYLGDEYHVNLAGS 213 (301)
T ss_pred ecC-CCC-cEecHHHcCCCceEEecCC
Confidence 443 221 222 23457888886 454
No 301
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.01 E-value=0.14 Score=45.52 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=67.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC---CCccccCCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP---LEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~---~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
.||.|+|+ |++|+.++..+... ++.=+-+++++. ..+..+... ... ..+...+++.+.+. ++|+||
T Consensus 128 k~vlIlGa-GGaaraia~aL~~~-G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~~~~~~~~~~~~------~aDiVI 197 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLTL-GVERLTIFDVDP--ARAAALADELNARFPAARATAGSDLAAALA------AADGLV 197 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHHc-CCCEEEEECCCH--HHHHHHHHHHHhhCCCeEEEeccchHhhhC------CCCEEE
Confidence 58999997 99999999988764 664466777642 122222210 000 11112344555553 799999
Q ss_pred EccCchhH----HHHHHHHHHCCCcE--EEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650 112 DFTDASTV----YDNVKQATAFGMRS--VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (220)
Q Consensus 112 DfT~p~~~----~~~~~~al~~G~~v--VigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~ 179 (220)
..|+.... ...-...++.+.-+ ++-.|.- ..|.+.|+++|.+++- .+++ |+.|.+.+.
T Consensus 198 naTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~-----T~ll~~A~~~G~~~~~----G~~M-L~~Qa~~~f 261 (284)
T PRK12549 198 HATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLE-----TELLRAARALGCRTLD----GGGM-AVFQAVDAF 261 (284)
T ss_pred ECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCC-----CHHHHHHHHCCCeEec----CHHH-HHHHHHHHH
Confidence 87753210 01111223333322 1223332 3477888888877654 5566 555665444
No 302
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.00 E-value=0.26 Score=44.76 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
-+|.||+|+|+.|++|+.++-.+....-..-+..+|.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3567999999889999999988875544433445665
No 303
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.00 E-value=0.25 Score=43.86 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..+|+|+|+ |.+|..+++.+... ++.=+-++|.
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~-GVg~itLiD~ 62 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALART-GIGAITLIDM 62 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 358999997 99999999998764 6544556774
No 304
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.98 E-value=0.23 Score=46.25 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=41.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
..+|||+|+ |+||+.+++.+... |+++.+ +|+..... . +..-+.++++++. .+|+|+-.
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~-G~~V~~-~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh 174 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGL-GWKVLV-CDPPRQEA----------E-GDGDFVSLERILE------ECDVISLH 174 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-ECCccccc----------c-cCccccCHHHHHh------hCCEEEEe
Confidence 358999997 99999999998764 898875 56532110 0 1112568899886 68988843
No 305
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.98 E-value=0.2 Score=43.32 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~ 66 (220)
||.|+|++|.+|+.+++.+.+.. +.+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999987753 4788764
No 306
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.97 E-value=0.27 Score=45.26 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=83.1
Q ss_pred ccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhc----CCc-EEEEEEec--CCCC--cchhh-----------hhcC
Q 027650 23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA----RGM-EVAGAIDS--HSVG--EDIGM-----------VCDM 82 (220)
Q Consensus 23 ~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~-eLvg~vd~--~~~g--~d~g~-----------l~g~ 82 (220)
++...+..+..+++||.|+|. |+=|+.+++.+.+. +.+ .-|..+.. ...| +.+.+ +.|+
T Consensus 9 ~~~~~~~~~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~ 87 (372)
T KOG2711|consen 9 ESIRNLGKAERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGI 87 (372)
T ss_pred hhhhccCchhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCc
Confidence 344444555566799999995 99999999987643 211 11222221 2223 12222 2233
Q ss_pred CCCCCccccCCHHHHHhccccCCCccEEEEccCchhHH----HHHHHHHHCCCcEEEeCCCCCHH-H---HHHHHHH---
Q 027650 83 EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQLE-T---VSALSAF--- 151 (220)
Q Consensus 83 ~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~----~~~~~al~~G~~vVigTtG~~~e-~---~~~L~~a--- 151 (220)
.-+.++...+|+.++.. ++|++| |..|+... +.+.-.++.+.+.|+-+-|++.. + +..+.+.
T Consensus 88 ~lP~NvvAv~dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 88 KLPENVVAVPDLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cCCCCeEecchHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 23456677889999885 799988 88776553 56667788888888766677531 1 2223333
Q ss_pred hhhcCceEEEcCCCcHHH
Q 027650 152 CDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 152 A~~~~v~vviapNfS~Gv 169 (220)
+-.-...++.-||++.-+
T Consensus 161 ~lgI~~~vL~GaNiA~EV 178 (372)
T KOG2711|consen 161 ALGIPCSVLMGANIASEV 178 (372)
T ss_pred HhCCCceeecCCchHHHH
Confidence 223344566667777666
No 307
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=94.97 E-value=0.15 Score=47.21 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=30.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID 68 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd 68 (220)
|.|+.|.|.||-+|..-.+.+.++|+ ++|++...
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~a 35 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAA 35 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEec
Confidence 57999999999999999999999887 69999876
No 308
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.96 E-value=0.12 Score=49.81 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=45.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
-.+|+|+|. |+||+.+++.+... ++++.+ +|+... .+.. ...++...+++++++. .+|+|+-..
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~f-G~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~l 201 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAF-GMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHT 201 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEcc
Confidence 358999996 99999999998764 888875 565311 1111 1235555578999986 799988544
Q ss_pred C
Q 027650 115 D 115 (220)
Q Consensus 115 ~ 115 (220)
+
T Consensus 202 P 202 (525)
T TIGR01327 202 P 202 (525)
T ss_pred C
Confidence 3
No 309
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=94.95 E-value=0.42 Score=41.25 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-CchhHHH
Q 027650 44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD 121 (220)
Q Consensus 44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~ 121 (220)
.|.=|.++++.+.+.+++. .+.+++.+. .+.+ ..++.++.|.++ .++|++|.++ +|+..++
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~e-----------fId~pee~Lp~i---~~~Dl~I~y~lHPDl~~~ 67 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPE-----------FIDDPEEYLPKI---PEADLLIAYGLHPDLTYE 67 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCc---cccc-----------cccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence 4888999999999988876 344444321 1111 134556665532 5899999876 7999999
Q ss_pred HHHHHHHCCCcEEEeCCCCC--HHHHHHHHHHhhhcCceEEEcCCC-cH---HHHHHHHHHHHhcCCCCCeEE-Ee----
Q 027650 122 NVKQATAFGMRSVVYVPHIQ--LETVSALSAFCDKASMGCLIAPTL-SI---GSILLQQAAISASFHYKNVEI-VE---- 190 (220)
Q Consensus 122 ~~~~al~~G~~vVigTtG~~--~e~~~~L~~aA~~~~v~vviapNf-S~---Gv~ll~~~a~~~~~~~~diEI-iE---- 190 (220)
..+.+.+.|...||.- +++ +...+.|++.+++.|+-+.....| |+ |--.+.+|+..+.+ +-+|| ++
T Consensus 68 l~~~~~e~g~kavIvp-~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGk--P~~ei~v~~~~I 144 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVP-SESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGK--PKVEIEVENGKI 144 (217)
T ss_pred HHHHHHHcCCCEEEEe-cCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCC--ceEEEEecCCcE
Confidence 9999999998888643 332 345667888899988878764332 22 33457788877654 34444 22
Q ss_pred ccCCCCCCCCchhhHHHHHH
Q 027650 191 SRPNARMQLKSPTTSPTLVR 210 (220)
Q Consensus 191 ~HH~~K~DaPSGTA~~~~~~ 210 (220)
..=+=..+||=|.+.-++.+
T Consensus 145 ~~V~VlR~aPCGsT~~vAk~ 164 (217)
T PF02593_consen 145 KDVKVLRSAPCGSTWFVAKR 164 (217)
T ss_pred EEEEEEecCCCccHHHHHHH
Confidence 11222468999988865544
No 310
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=94.94 E-value=0.19 Score=44.13 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA 106 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~ 106 (220)
+|++|.|.|+| .=|+.+++.+.+. +..+..-+..+. |. .. ..++++ .+++.+.+.+ .+
T Consensus 1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~~-------~~~~~v~~G~l~~~~~l~~~l~~----~~ 65 (248)
T PRK08057 1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-PA-------DLPGPVRVGGFGGAEGLAAYLRE----EG 65 (248)
T ss_pred CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-cc-------cCCceEEECCCCCHHHHHHHHHH----CC
Confidence 46789999986 5699999888765 676665444332 22 11 112222 2456666654 68
Q ss_pred ccEEEEccCchhHH--HH-HHHHHHCCCcEE-EeCCCCC---------HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650 107 RAVVIDFTDASTVY--DN-VKQATAFGMRSV-VYVPHIQ---------LETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (220)
Q Consensus 107 ~DVVIDfT~p~~~~--~~-~~~al~~G~~vV-igTtG~~---------~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~ 173 (220)
+++|||.|+|-+.. ++ ...|.+.|+|.+ ..=+.+. -+..++..+++.+. -.+++ .+|+.-+.
T Consensus 66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vll----ttGsk~l~ 140 (248)
T PRK08057 66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVLL----TTGRQPLA 140 (248)
T ss_pred CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEEE----ecCcchHH
Confidence 99999999996652 44 478888999987 3323221 11233333333333 35666 66776555
Q ss_pred HHH
Q 027650 174 QAA 176 (220)
Q Consensus 174 ~~a 176 (220)
.+.
T Consensus 141 ~f~ 143 (248)
T PRK08057 141 HFA 143 (248)
T ss_pred HHh
Confidence 554
No 311
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.93 E-value=0.35 Score=45.00 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=42.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
..+|||+|. |+||+.+++.+... |+++.+ +|+... +.+ . . ..+.++++++. .+|+|+-.+
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~-G~~V~~-~dp~~~--~~~-------~-~-~~~~~L~ell~------~sDiI~lh~ 175 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEAL-GIKTLL-CDPPRA--DRG-------D-E-GDFRSLDELVQ------EADILTFHT 175 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC-CCEEEE-ECCccc--ccc-------c-c-cccCCHHHHHh------hCCEEEEeC
Confidence 459999997 99999999998765 899886 565321 100 0 1 12568999986 689888433
No 312
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.91 E-value=0.097 Score=49.22 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=57.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
...||.|+|+ |-||..+++.+... ++.-+-++.++. ..+.+++. .++ +.-++++.+.+. ++||||
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~-g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvVi 243 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEK-GVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVI 243 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhC-CCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEE
Confidence 3457999998 99999999999875 666666776643 23334442 333 233566677775 799999
Q ss_pred EccC-chh--HHHHHHHHHHCCCc
Q 027650 112 DFTD-AST--VYDNVKQATAFGMR 132 (220)
Q Consensus 112 DfT~-p~~--~~~~~~~al~~G~~ 132 (220)
-.|. |+. ..+.+..+++....
T Consensus 244 ssTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 244 SSTSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred EecCCCccccCHHHHHHHHhcccC
Confidence 6652 333 35777888777666
No 313
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.89 E-value=1.3 Score=40.21 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---Cc--chhhhhcC-CCCCCccccCCHHHHHhccccCC
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---GE--DIGMVCDM-EQPLEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g~--d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~ 105 (220)
..+.||+|+|+ |.||..++..+.. .++ + +.++|.+.. |+ |....... +....+..+.|+++ +.
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~-~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~------ 73 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVL-KNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IA------ 73 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hC------
Confidence 34569999997 9999999887664 454 7 778885321 11 11111110 00123444578864 43
Q ss_pred CccEEEEc
Q 027650 106 ARAVVIDF 113 (220)
Q Consensus 106 ~~DVVIDf 113 (220)
++|+||..
T Consensus 74 ~aDiVI~t 81 (321)
T PTZ00082 74 GSDVVIVT 81 (321)
T ss_pred CCCEEEEC
Confidence 89998853
No 314
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=94.87 E-value=0.39 Score=44.96 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=59.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH---HHHhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DVV 110 (220)
-|+.|+|+ |..|..+++.+.+++ +++++|.+|.+... ... ..|+|+..+.+ +.+.+ .++|.|
T Consensus 126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------i~g~pVlg~~~~l~~~i~~----~~id~V 192 (445)
T TIGR03025 126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVE------VAGLPVLGKLDDLVELVRA----HRVDEV 192 (445)
T ss_pred CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccc------cCCCcccCCHHHHHHHHHh----CCCCEE
Confidence 57999996 999999999998765 58999999853211 111 23677765554 44443 578876
Q ss_pred EEccCch----hHHHHHHHHHHCCCcEEE
Q 027650 111 IDFTDAS----TVYDNVKQATAFGMRSVV 135 (220)
Q Consensus 111 IDfT~p~----~~~~~~~~al~~G~~vVi 135 (220)
+- +.|. ...+.+..|.+.|+.+.+
T Consensus 193 iI-a~p~~~~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 193 II-ALPLSEEARILELLLQLRDLGVDVRL 220 (445)
T ss_pred EE-ecCcccHHHHHHHHHHHHhcCCEEEE
Confidence 63 4333 234667888899998876
No 315
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.86 E-value=0.31 Score=41.52 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=27.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
..||+|+|+ |.+|..+++.+... ++.=+.++|.+
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 358999998 99999999998764 77656677853
No 316
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.85 E-value=0.13 Score=49.55 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=26.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |.||+.++..+... +++++ ++|+
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~a-G~~V~-l~d~ 36 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASA-GHQVL-LYDI 36 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 358999997 99999999988764 88887 5675
No 317
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.23 Score=45.62 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=88.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh------cCC-CCCCccccCCHHHHHhccccCCCcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC------DME-QPLEIPVMSDLTMVLGSISQSKARA 108 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~------g~~-~~~gv~v~~dl~~~l~~~~~~~~~D 108 (220)
.-+.|+||+|..|+.+++.+..+ +... + ..|++.+.+- |.. ..+++-+-.-++++++ ..+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~-g~~~--a----LAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~------~~~ 73 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLARE-GLTA--A----LAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS------RTQ 73 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHc-CCch--h----hccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh------cce
Confidence 46899999999999999998764 4444 1 2234333332 321 0111111223455554 799
Q ss_pred EEEEccCchhH--HHHHHHHHHCCCcEEEeCCCCC--HHHHHHH-HHHhhhcCceEEEcCCC-----cHHHHHHHHHHHH
Q 027650 109 VVIDFTDASTV--YDNVKQATAFGMRSVVYVPHIQ--LETVSAL-SAFCDKASMGCLIAPTL-----SIGSILLQQAAIS 178 (220)
Q Consensus 109 VVIDfT~p~~~--~~~~~~al~~G~~vVigTtG~~--~e~~~~L-~~aA~~~~v~vviapNf-----S~Gv~ll~~~a~~ 178 (220)
||+.+.-|-.. ...++.|+.+|.+..= -||-- =|+.-.+ .+-|++.|+.|+-+-+| -+|+.-+.+ +
T Consensus 74 VVlncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~---~ 149 (382)
T COG3268 74 VVLNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLK---Q 149 (382)
T ss_pred EEEeccccccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHHH---h
Confidence 99988777666 4889999999999983 34421 1333334 77788888888866555 344433322 2
Q ss_pred hcCCCCCeEEEeccCCCCCCCC
Q 027650 179 ASFHYKNVEIVESRPNARMQLK 200 (220)
Q Consensus 179 ~~~~~~diEIiE~HH~~K~DaP 200 (220)
.. ..+-=|.+-.|-.-+-+.-
T Consensus 150 ~~-~d~~~~~~~t~l~l~s~t~ 170 (382)
T COG3268 150 AL-PDGTEELIATHLALGSFTG 170 (382)
T ss_pred hC-cccccchhhhheeeeeccc
Confidence 22 2334456677766666655
No 318
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.82 E-value=0.2 Score=47.14 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=31.5
Q ss_pred CCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
++++..+..|.|+|++|+.|+.+++.+.+. ++.+-+++..
T Consensus 73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkr-gf~vra~VRd 112 (411)
T KOG1203|consen 73 NNNSKKPTTVLVVGATGKVGRRIVKILLKR-GFSVRALVRD 112 (411)
T ss_pred CCCCCCCCeEEEecCCCchhHHHHHHHHHC-CCeeeeeccC
Confidence 344456689999999999999999998875 6777766643
No 319
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.82 E-value=0.14 Score=44.94 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=27.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
.||.|.|++|.+|+.+++.+.+. +.++++...
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR-GYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC-CCEEEEEEc
Confidence 58999999999999999998875 788887664
No 320
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=94.81 E-value=0.22 Score=44.04 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=26.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|||.|.|++|.+|+.+++.+.+. +.+++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-CCeEEEEe
Confidence 58999999999999999988764 78888753
No 321
>PLN02650 dihydroflavonol-4-reductase
Probab=94.79 E-value=0.12 Score=46.31 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
+..+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLER-GYTVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEc
Confidence 4468999999999999999999874 788887654
No 322
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.74 E-value=0.14 Score=46.52 Aligned_cols=73 Identities=26% Similarity=0.362 Sum_probs=46.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC--CCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ--PLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~--~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
|+|.|.|+.|.+|+..+..+.+ .+.++| ++|+-..|.... +... .. ..++.-..-+++++++ .++|.||.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~~-v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKIA-LLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHHH-hhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence 5899999999999999999887 688877 577533333211 1100 00 0011112246777775 68999999
Q ss_pred ccC
Q 027650 113 FTD 115 (220)
Q Consensus 113 fT~ 115 (220)
|+.
T Consensus 74 FAa 76 (329)
T COG1087 74 FAA 76 (329)
T ss_pred Ccc
Confidence 963
No 323
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.70 E-value=0.43 Score=43.48 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=59.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
-.++||+|. ||+|+.+++.+. -=++++.. .++... ....+ ..+.. |-++++++. +.|+|+...
T Consensus 146 gktvGIiG~-GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~~------~~~~~-y~~l~ell~------~sDii~l~~ 208 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAEK------ELGAR-YVDLDELLA------ESDIISLHC 208 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHHh------hcCce-eccHHHHHH------hCCEEEEeC
Confidence 369999995 999999999887 45888876 444321 11111 22233 445999997 799988655
Q ss_pred Cc--hhH-HHHHHHHHHCCCcE-EEeCC-CCCHHHHHHHHHHhhhcCc
Q 027650 115 DA--STV-YDNVKQATAFGMRS-VVYVP-HIQLETVSALSAFCDKASM 157 (220)
Q Consensus 115 ~p--~~~-~~~~~~al~~G~~v-VigTt-G~~~e~~~~L~~aA~~~~v 157 (220)
+. +.. .=+.+.....+..+ +|-|- |---++ +.|.++-++..+
T Consensus 209 Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe-~ALi~AL~~g~i 255 (324)
T COG1052 209 PLTPETRHLINAEELAKMKPGAILVNTARGGLVDE-QALIDALKSGKI 255 (324)
T ss_pred CCChHHhhhcCHHHHHhCCCCeEEEECCCccccCH-HHHHHHHHhCCc
Confidence 42 222 22233334444433 34444 432232 345555555444
No 324
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.69 E-value=0.21 Score=41.66 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
|.+|.|.|++|.+|+.+++.+.+. +.+|+.+..
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER-GWQVTATVR 33 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeC
Confidence 457999999999999999998864 788876543
No 325
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.67 E-value=0.42 Score=44.44 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=59.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCccc--c
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPV--M 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v--~ 91 (220)
..||.|+|+ |.+|..++..+.. .++.=+.++|.+. .+ .|+| .+..+ ...+.+ +
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~--np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAA-AGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI--NPLVNVRLH 117 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh--CCCcEEEEE
Confidence 358999998 9999999999875 4776667888421 01 1111 01111 112222 1
Q ss_pred ------CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-CC
Q 027650 92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI 140 (220)
Q Consensus 92 ------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G~ 140 (220)
.+..+++. ++|+|||++..... ...-..|.++|+|+|.|.. |+
T Consensus 118 ~~~i~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 118 EFRLDPSNAVELFS------QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred eccCChhHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 12334553 79999998754333 4555889999999998765 54
No 326
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=1.7 Score=40.55 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=70.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-C-HHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVVIDf 113 (220)
.||.|+|. |++|..+++.+.+ .+.++++ +|....-....++-.. ..|+.++. . .+..+. ++|+|| .
T Consensus 6 ~~~~v~G~-g~~G~~~a~~l~~-~g~~v~~-~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~~------~~d~vv-~ 73 (445)
T PRK04308 6 KKILVAGL-GGTGISMIAYLRK-NGAEVAA-YDAELKPERVAQIGKM--FDGLVFYTGRLKDALDN------GFDILA-L 73 (445)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHHh------CCCEEE-E
Confidence 48999997 9999999888765 5788765 5642211111222100 12555432 2 222232 789888 4
Q ss_pred cC--chhHHHHHHHHHHCCCcEE-----------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650 114 TD--ASTVYDNVKQATAFGMRSV-----------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (220)
Q Consensus 114 T~--p~~~~~~~~~al~~G~~vV-----------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv~ll 172 (220)
|+ |.. .+.++.|.++|++++ |+-||-+ + -...-|..+-+..|.......|+ |..++
T Consensus 74 spgi~~~-~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~ 150 (445)
T PRK04308 74 SPGISER-QPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVL 150 (445)
T ss_pred CCCCCCC-CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHH
Confidence 43 322 234455555555542 3444431 1 12233444444555555666774 44333
Q ss_pred HHHHHHhcCCCCCeEEEecc
Q 027650 173 QQAAISASFHYKNVEIVESR 192 (220)
Q Consensus 173 ~~~a~~~~~~~~diEIiE~H 192 (220)
..+.... +...|+-|+|.=
T Consensus 151 ~~~~~~~-~~~~d~~VlE~~ 169 (445)
T PRK04308 151 EAELQRE-GKKADVWVLELS 169 (445)
T ss_pred HHHHhhc-CCCCcEEEEEeC
Confidence 3222111 123577777764
No 327
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=94.62 E-value=0.094 Score=48.98 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=87.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-----ccC---CHHHHHhccccCCC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-----VMS---DLTMVLGSISQSKA 106 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-----v~~---dl~~~l~~~~~~~~ 106 (220)
+-+|.+.|+ |++-+-.++.+....++++.-+++.. +++.++.. ..++. +.+ .++... .+
T Consensus 2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~~v------~~ 68 (445)
T KOG0172|consen 2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRKEV------KP 68 (445)
T ss_pred CcceEEecC-ccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHhhh------cc
Confidence 458999996 99999999999999999999888753 23333332 11111 111 222333 36
Q ss_pred ccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (220)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ 170 (220)
-|+++-.++...+.-.++.|..++.++| |+.+-..+.++|++.+...|+-++=--.+-+|+-
T Consensus 69 ~D~viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGid 130 (445)
T KOG0172|consen 69 LDLVISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGID 130 (445)
T ss_pred cceeeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcchh
Confidence 7999966666777777899999999999 6678777889999999998888775445666663
No 328
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.34 Score=41.62 Aligned_cols=32 Identities=34% Similarity=0.357 Sum_probs=26.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|.++.|.|++|.+|+.+++.+.+ .+.+|+...
T Consensus 1 mk~vlItGasggiG~~la~~l~~-~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKA-AGYEVWATA 32 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 45799999999999999999876 488887653
No 329
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.57 E-value=0.16 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR 59 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~ 59 (220)
+||+|+||+|++|+.++..+...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 589999999999999998887643
No 330
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.51 E-value=0.37 Score=44.38 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=56.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----l~g~~~~~gv~v~-- 91 (220)
..||+|+|+ |..|..+++.+.. .++.=+-++|.+. .|+.-.+ +..+.....+..+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~-~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAA-AGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 358999998 9999999998876 4765566777531 1111111 1101000111111
Q ss_pred ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
.++++++. ++|+|||++..... ...-..|.++++|+|.+..
T Consensus 213 ~~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 213 RVTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred cCChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 12334453 68999988754333 4455778889999887654
No 331
>PRK06182 short chain dehydrogenase; Validated
Probab=94.50 E-value=0.66 Score=39.81 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=26.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.+|.|.|++|++|+.+++.+.+ .+.+++++.
T Consensus 4 k~vlItGasggiG~~la~~l~~-~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAA-QGYTVYGAA 34 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 5799999999999999999876 588887654
No 332
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.49 E-value=0.38 Score=43.09 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=26.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
+||.|.|++|.+|+.+++.+.+. +.++++..
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHC-CCEEEEEe
Confidence 68999999999999999999864 78887653
No 333
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.49 E-value=0.26 Score=47.17 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (220)
.-.-.+|+|+|+ |++|+.+++.+.. -+++++ +++++.. + ..+.. ..|+. +.++++++. .+|+||
T Consensus 251 ~LaGKtVgVIG~-G~IGr~vA~rL~a-~Ga~Vi-V~e~dp~-~-a~~A~----~~G~~-~~~leell~------~ADIVI 314 (476)
T PTZ00075 251 MIAGKTVVVCGY-GDVGKGCAQALRG-FGARVV-VTEIDPI-C-ALQAA----MEGYQ-VVTLEDVVE------TADIFV 314 (476)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCch-h-HHHHH----hcCce-eccHHHHHh------cCCEEE
Confidence 334468999997 9999999998876 478754 4554311 1 10101 12333 346888875 799999
Q ss_pred EccCchhHH-HHHHHHHHCCCcEE
Q 027650 112 DFTDASTVY-DNVKQATAFGMRSV 134 (220)
Q Consensus 112 DfT~p~~~~-~~~~~al~~G~~vV 134 (220)
..+...... ......++.|.-++
T Consensus 315 ~atGt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 315 TATGNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred ECCCcccccCHHHHhccCCCcEEE
Confidence 776433332 23333344444333
No 334
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.48 E-value=0.22 Score=48.12 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
...+|+|+|. |+||+.+++.+... ++++.+ +|+... .+.. . ..++... ++++++. .+|+|+..
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~f-G~~V~~-~d~~~~-~~~~--~----~~g~~~~-~l~ell~------~aDiV~l~ 201 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAF-GMKVIA-YDPYIS-PERA--A----QLGVELV-SLDELLA------RADFITLH 201 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC-CCEEEE-ECCCCC-hhHH--H----hcCCEEE-cHHHHHh------hCCEEEEc
Confidence 3468999996 99999999998764 888875 565311 1111 1 2344444 8999986 78988854
Q ss_pred cC
Q 027650 114 TD 115 (220)
Q Consensus 114 T~ 115 (220)
.+
T Consensus 202 lP 203 (526)
T PRK13581 202 TP 203 (526)
T ss_pred cC
Confidence 43
No 335
>PLN02240 UDP-glucose 4-epimerase
Probab=94.45 E-value=0.37 Score=42.78 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.||.|.|++|.+|+.+++.+.+. +.+|+++.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLA-GYKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 68999999999999999998875 78888764
No 336
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.45 E-value=0.086 Score=49.37 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=47.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
..+|+|+|+ |.||+.+++.+... +.+-+-+++++. ..+..+.. .+| +..+.++.+.+. ++|+||.
T Consensus 182 ~~~vlViGa-G~iG~~~a~~L~~~-G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~ 248 (423)
T PRK00045 182 GKKVLVIGA-GEMGELVAKHLAEK-GVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVIS 248 (423)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHC-CCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEE
Confidence 368999997 99999999988754 664445566532 12222221 122 222345556654 7999998
Q ss_pred ccC-chhH--HHHHHHHH
Q 027650 113 FTD-ASTV--YDNVKQAT 127 (220)
Q Consensus 113 fT~-p~~~--~~~~~~al 127 (220)
+|. |... .+.+..++
T Consensus 249 aT~s~~~~i~~~~l~~~~ 266 (423)
T PRK00045 249 STGAPHPIIGKGMVERAL 266 (423)
T ss_pred CCCCCCcEEcHHHHHHHH
Confidence 874 3333 34555544
No 337
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.44 E-value=0.19 Score=44.40 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.+|.|.|++|.+|+.+++.+.+. +.++++.+++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLR-GYTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence 58999999999999999998874 7888887764
No 338
>PLN00198 anthocyanidin reductase; Provisional
Probab=94.44 E-value=0.17 Score=45.02 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
..+.+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r 41 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVR 41 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEEC
Confidence 34678999999999999999999875 778876653
No 339
>PRK06823 ornithine cyclodeaminase; Validated
Probab=94.42 E-value=0.083 Score=47.81 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=60.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C-CCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E-QPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
-+++|+|+ |..++.+++++.....++=+-++++.. ..+..+... . ....+.+.++.++++. ++|+|+=+
T Consensus 129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~ta 199 (315)
T PRK06823 129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVTT 199 (315)
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEEe
Confidence 48999996 999999999998888888888888742 112111110 0 0123444789999885 89999854
Q ss_pred cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (220)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-igT 137 (220)
|+ ... +.+ ...++.|.++. ||+
T Consensus 200 T~-s~~-P~~~~~~l~~G~hi~~iGs 223 (315)
T PRK06823 200 TP-SRE-PLLQAEDIQPGTHITAVGA 223 (315)
T ss_pred cC-CCC-ceeCHHHcCCCcEEEecCC
Confidence 43 221 222 23567899987 553
No 340
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.39 E-value=0.098 Score=48.00 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (220)
..+|+|+||+|.||+.+++.+.+..+. +|+ ++++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 358999999999999999999754333 444 3444
No 341
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.36 E-value=0.31 Score=41.71 Aligned_cols=31 Identities=39% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
|.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~ 31 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRS 31 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeCC
Confidence 57999999999999999887 47899887653
No 342
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.36 E-value=0.27 Score=46.56 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~ 69 (220)
||.|+|| |.+|.++++.+.. .|+ .-+.++|.
T Consensus 1 kVlvVGa-GGlGcE~lKnLal-~Gv~~g~~G~I~IvD~ 36 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFAL-MGVGTGESGEITVTDM 36 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCcCCCCeEEEECC
Confidence 6999998 9999999999875 477 56667884
No 343
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.34 E-value=0.74 Score=34.11 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=47.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (220)
+|+|+|+.-++-..+-+.+.+ -+.++... .++. |..- -...++..+. ++|+||-+|..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~-~G~~~~~h-g~~~-~~~~-------------~~~~l~~~i~------~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEK-YGGKLIHH-GRDG-GDEK-------------KASRLPSKIK------KADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHH-cCCEEEEE-ecCC-CCcc-------------chhHHHHhcC------CCCEEEEEeCC
Confidence 589999434788877777666 57777765 3221 1100 0112444453 78998877753
Q ss_pred hhH---HHHHHHHHHCCCcEEEeC-CCCC
Q 027650 117 STV---YDNVKQATAFGMRSVVYV-PHIQ 141 (220)
Q Consensus 117 ~~~---~~~~~~al~~G~~vVigT-tG~~ 141 (220)
-.+ ...-..|.+.|+|++.-. +|++
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 332 334456666677777654 3544
No 344
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.31 E-value=0.47 Score=46.63 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI 67 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v 67 (220)
.++||.|.|++|.+|+.+++.+.+. ++.+++++.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3479999999999999999999875 578887653
No 345
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=94.30 E-value=0.12 Score=46.19 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
|||.|.|++|.+|+.+++.+.+. +.+.+..++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence 58999999999999999999875 333333344
No 346
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.29 E-value=0.1 Score=46.88 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
++.+||.|.|++|.+|+.+++.+.+. +.++++..+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence 34569999999999999999999875 788887654
No 347
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.19 E-value=0.21 Score=45.24 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
|||+|+|++|++|..++-.+...+-..=+..+|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 6999999889999999988776544333346664
No 348
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.17 E-value=0.46 Score=43.13 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=43.4
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
-...+|||+|. |++|+.+++.+...=++++++ +|+... .+... ..++. +.++++++. .+|+|+-
T Consensus 143 L~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~-~~~~~~-~~~~~------~~~~~-~~~l~ell~------~sDvv~l 206 (323)
T PRK15409 143 VHHKTLGIVGM-GRIGMALAQRAHFGFNMPILY-NARRHH-KEAEE------RFNAR-YCDLDTLLQ------ESDFVCI 206 (323)
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhHH------hcCcE-ecCHHHHHH------hCCEEEE
Confidence 34469999996 999999999886223888874 554311 11111 22333 469999997 7998885
Q ss_pred cc
Q 027650 113 FT 114 (220)
Q Consensus 113 fT 114 (220)
..
T Consensus 207 h~ 208 (323)
T PRK15409 207 IL 208 (323)
T ss_pred eC
Confidence 43
No 349
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.15 E-value=0.33 Score=42.48 Aligned_cols=127 Identities=19% Similarity=0.109 Sum_probs=66.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
..+|+|+|+ |.||+.++..+... +.++. +++++. ..+.++...-...+.....++++... .++|+||.+|
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~-g~~v~-v~~R~~--~~~~~la~~~~~~~~~~~~~~~~~~~-----~~~DivInat 186 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKA-DCNVI-IANRTV--SKAEELAERFQRYGEIQAFSMDELPL-----HRVDLIINAT 186 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHHHHhhcCceEEechhhhcc-----cCccEEEECC
Confidence 358999997 99999999998865 56655 556532 12222221000112111223333322 3789999776
Q ss_pred CchhH--H---HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650 115 DASTV--Y---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (220)
Q Consensus 115 ~p~~~--~---~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~ 179 (220)
+.... . ......++.+.-++ -..-...+. .|.+.|++.|.+++- .+++ |+.|.+.+.
T Consensus 187 p~gm~~~~~~~~~~~~~l~~~~~v~-D~~y~p~~T--~ll~~A~~~G~~~vd----G~~M-l~~Qa~~~f 248 (270)
T TIGR00507 187 SAGMSGNIDEPPVPAEKLKEGMVVY-DMVYNPGET--PFLAEAKSLGTKTID----GLGM-LVAQAALAF 248 (270)
T ss_pred CCCCCCCCCCCCCCHHHcCCCCEEE-EeccCCCCC--HHHHHHHHCCCeeeC----CHHH-HHHHHHHHH
Confidence 53211 0 11123345554333 222111121 478888888887664 5555 556666444
No 350
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.15 E-value=0.4 Score=43.27 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-.+|+|+|. |++|+.+++.+... ++++.+ +++.. ..+ ... -+.++++++. .+|+|+..
T Consensus 146 ~gktvgIiG~-G~IG~~va~~l~~f-g~~V~~-~~~~~-~~~----------~~~-~~~~l~ell~------~sDiv~l~ 204 (314)
T PRK06932 146 RGSTLGVFGK-GCLGTEVGRLAQAL-GMKVLY-AEHKG-ASV----------CRE-GYTPFEEVLK------QADIVTLH 204 (314)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcC-CCEEEE-ECCCc-ccc----------ccc-ccCCHHHHHH------hCCEEEEc
Confidence 3469999996 99999999988764 889876 45421 000 011 1568999997 79998855
Q ss_pred c
Q 027650 114 T 114 (220)
Q Consensus 114 T 114 (220)
.
T Consensus 205 ~ 205 (314)
T PRK06932 205 C 205 (314)
T ss_pred C
Confidence 4
No 351
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.15 E-value=0.27 Score=44.16 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (220)
|||+|+|++|.+|..++..+...+-. +|+.+ |+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv-d~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI-SR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE-EC
Confidence 69999999999999999988876433 46554 54
No 352
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.3 Score=45.83 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=69.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCC-------CCCccccCCHHHHHhcc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSI 101 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~-------~~gv~v~~dl~~~l~~~ 101 (220)
.-.||+|-|. |+.|+..++.+.+. +.+||++.|+ +..|-|...+....+ -.+....+ -++++.
T Consensus 206 ~G~rVaVQG~-GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~-- 280 (411)
T COG0334 206 EGARVAVQGF-GNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLE-- 280 (411)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-cccccc--
Confidence 4579999996 99999999999876 9999999985 334666544432210 11222222 266665
Q ss_pred ccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650 102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTL 165 (220)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNf 165 (220)
.++|+++=+...+.. .+++.....+ +|.|-. + ++++ ..++.. + ..+++.|.+
T Consensus 281 ---~~cDIl~PcA~~n~I~~~na~~l~ak---~V~EgAN~P~t~e-A~~i~~---e--rGIl~~PD~ 335 (411)
T COG0334 281 ---VDCDILIPCALENVITEDNADQLKAK---IVVEGANGPTTPE-ADEILL---E--RGILVVPDI 335 (411)
T ss_pred ---ccCcEEcccccccccchhhHHHhhhc---EEEeccCCCCCHH-HHHHHH---H--CCCEEcChh
Confidence 389998866665544 4555543333 777654 4 3443 333332 4 356666654
No 353
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.13 E-value=0.29 Score=48.88 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=27.0
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
....||+|+|+ |.||+.++..+....+++++ ++|.
T Consensus 302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~ 336 (699)
T TIGR02440 302 AKIKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI 336 (699)
T ss_pred ccccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 34568999997 99999999877645688776 4664
No 354
>PRK07411 hypothetical protein; Validated
Probab=94.12 E-value=0.49 Score=44.01 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=60.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCccccC-
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVMS- 92 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v~~- 92 (220)
..||+|+|+ |.+|..+++.+.. .|+.=..++|.+. .+ .|+| .+..+.....+..+.
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~-~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAA-AGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 458999998 9999999998876 4777777888421 11 1111 011111011111111
Q ss_pred -----CHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-CC
Q 027650 93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI 140 (220)
Q Consensus 93 -----dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G~ 140 (220)
+..+.+. ++|+|||++..-.. .-.-..|.+.++|+|.|.. ||
T Consensus 116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 2334454 79999999865544 3444788999999998755 54
No 355
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.11 E-value=0.14 Score=46.22 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=42.3
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (220)
..||+|+|+ |++|..++-.+...+-..=+.++|... .|. |+...........+..+.|++++ . ++|+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~------~adi 74 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-A------NSKV 74 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-C------CCCE
Confidence 459999997 999999988777654444345778522 121 22222111001134445788864 3 8999
Q ss_pred EEEc
Q 027650 110 VIDF 113 (220)
Q Consensus 110 VIDf 113 (220)
||.+
T Consensus 75 vvit 78 (312)
T cd05293 75 VIVT 78 (312)
T ss_pred EEEC
Confidence 8864
No 356
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.52 Score=40.73 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=26.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
+.+|.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~-~G~~Vi~~~ 35 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS-DGWRVFATC 35 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence 34799999999999999999876 588887654
No 357
>PRK14852 hypothetical protein; Provisional
Probab=94.05 E-value=0.39 Score=49.69 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=26.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |++|..++..+... |+.=.-++|.
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAra-GVG~I~L~D~ 364 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLART-GIGNFNLADF 364 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 458999998 99999999988764 6655556673
No 358
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.05 E-value=0.2 Score=46.93 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=48.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
..+|+|+|+ |.||+.+++.+... ++.-+-+++++. ..+.+++. ..+ ...++++.+++. ++|+||.
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~-G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~ 246 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRK-GVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVIS 246 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHC-CCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEE
Confidence 358999997 99999999998774 643344566532 22222221 111 112346666665 7999998
Q ss_pred ccC-chhH--HHHHHHHHH
Q 027650 113 FTD-ASTV--YDNVKQATA 128 (220)
Q Consensus 113 fT~-p~~~--~~~~~~al~ 128 (220)
+|. |... .+.+..+..
T Consensus 247 aT~s~~~ii~~e~l~~~~~ 265 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALR 265 (417)
T ss_pred CCCCCCceEcHHHHHHHHh
Confidence 874 3333 355555544
No 359
>PLN02494 adenosylhomocysteinase
Probab=94.02 E-value=0.41 Score=45.85 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=59.2
Q ss_pred CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (220)
Q Consensus 30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (220)
+....-.+|+|+|+ |++|+.+++.+... +++++. ++++.. + ..+.. ..|..+ .++++++. .+|+
T Consensus 249 ~i~LaGKtVvViGy-G~IGr~vA~~aka~-Ga~VIV-~e~dp~-r-~~eA~----~~G~~v-v~leEal~------~ADV 312 (477)
T PLN02494 249 DVMIAGKVAVICGY-GDVGKGCAAAMKAA-GARVIV-TEIDPI-C-ALQAL----MEGYQV-LTLEDVVS------EADI 312 (477)
T ss_pred CCccCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EeCCch-h-hHHHH----hcCCee-ccHHHHHh------hCCE
Confidence 33333468999997 99999999998765 888654 554321 1 11111 123332 26788875 7999
Q ss_pred EEEccCchhH-HHHHHHHHHCCCcEE-EeCCCCCHHHHHHHHHH
Q 027650 110 VIDFTDASTV-YDNVKQATAFGMRSV-VYVPHIQLETVSALSAF 151 (220)
Q Consensus 110 VIDfT~p~~~-~~~~~~al~~G~~vV-igTtG~~~e~~~~L~~a 151 (220)
+|..|..... .......++.|.-++ +|-.+ ++-+.+.|.++
T Consensus 313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~-~eID~~aL~~~ 355 (477)
T PLN02494 313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD-NEIDMLGLETY 355 (477)
T ss_pred EEECCCCccchHHHHHhcCCCCCEEEEcCCCC-CccCHHHHhhc
Confidence 9976654433 344444555554444 33222 23334556655
No 360
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=94.00 E-value=0.27 Score=43.16 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=72.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-----ccCCHHHHHhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-----VMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-----v~~dl~~~l~~~~~~~~~DVV 110 (220)
|||.|.|+| .=|+.+++.+.+... -++.++- ++.++-...... ...+. -.+++.+.+.+ .++|+|
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t-~~g~~~~~~~~~---~~~v~~G~lg~~~~l~~~l~~----~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVAT-SYGGELLKPELP---GLEVRVGRLGDEEGLAEFLRE----NGIDAV 70 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEh-hhhHhhhccccC---CceEEECCCCCHHHHHHHHHh----CCCcEE
Confidence 689999986 569999999887655 2333322 221111100000 00111 12355666653 689999
Q ss_pred EEccCchhH--HHH-HHHHHHCCCcEE-EeCCCCC---------HHHHHHHHHHhhh-cCceEEEcCCCcHHHHHHHHHH
Q 027650 111 IDFTDASTV--YDN-VKQATAFGMRSV-VYVPHIQ---------LETVSALSAFCDK-ASMGCLIAPTLSIGSILLQQAA 176 (220)
Q Consensus 111 IDfT~p~~~--~~~-~~~al~~G~~vV-igTtG~~---------~e~~~~L~~aA~~-~~v~vviapNfS~Gv~ll~~~a 176 (220)
||.|+|-+. -++ ...|.+.|+|.+ ..=|.+. -+..++..+++.+ .+-.+++ .+|..-+..+.
T Consensus 71 IDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~f~ 146 (249)
T PF02571_consen 71 IDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPPFV 146 (249)
T ss_pred EECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHHHh
Confidence 999999665 244 478888999997 3333221 1223333333333 3367777 77887777675
Q ss_pred H
Q 027650 177 I 177 (220)
Q Consensus 177 ~ 177 (220)
.
T Consensus 147 ~ 147 (249)
T PF02571_consen 147 P 147 (249)
T ss_pred h
Confidence 4
No 361
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=93.99 E-value=0.78 Score=43.06 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=57.4
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCC--HHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVV 110 (220)
+-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ..+. .-.|+|+..+ +.+.+.+ .++|.|
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~~----~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYAR----TRYAYV 192 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHHh----CCCCEE
Confidence 457999997 999999999987654 5899999985321 1111 0235566544 4444442 478865
Q ss_pred EEccCc----hhHHHHHHHHHHCCC-cEEEeCCCC
Q 027650 111 IDFTDA----STVYDNVKQATAFGM-RSVVYVPHI 140 (220)
Q Consensus 111 IDfT~p----~~~~~~~~~al~~G~-~vVigTtG~ 140 (220)
+ .+.| +...+.+..|.+.|+ .+.+ .|.+
T Consensus 193 i-IAip~~~~~~~~~ll~~l~~~~v~~V~~-vP~~ 225 (456)
T TIGR03022 193 I-VAMPGTQAEDMARLVRKLGALHFRNVLI-VPSL 225 (456)
T ss_pred E-EecCCccHHHHHHHHHHHHhCCCeEEEE-eCcc
Confidence 5 3443 333466677777888 5544 4543
No 362
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=93.98 E-value=0.43 Score=41.33 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
||.|.|++|.+|+.+++.+.+. +.+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~-g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES-GHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC-CCeEEEE
Confidence 6899999999999999998764 6777654
No 363
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.98 E-value=0.14 Score=45.74 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=24.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (220)
||+|+|+ |++|+.++..+....-. +|+ ++|+
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~ 33 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDI 33 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 8999997 99999999988765433 444 5675
No 364
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.97 E-value=0.34 Score=43.87 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc---cccCC--HHHHHhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSD--LTMVLGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv---~v~~d--l~~~l~~~~~~~~~DVV 110 (220)
-+|.|+|++|.+|...+.++... +...++++.+.. ....+. .+|. ..|.+ +.+.+.++..+..+|+|
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~---k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSE---KLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHH---HHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 37999999999999999887765 546666655421 111111 2222 11322 44443322112369999
Q ss_pred EEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650 111 IDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTtG 139 (220)
+|....+.+.+.+......|.-+.+|.++
T Consensus 216 ~D~vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 216 LDTVGGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EECCCHHHHHHHHHHhccCCEEEEEecCC
Confidence 99888887777777777777777888875
No 365
>PRK05442 malate dehydrogenase; Provisional
Probab=93.95 E-value=0.34 Score=44.06 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=20.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHh
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTK 57 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~ 57 (220)
.+.||+|+|++|.+|..++-.+..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHh
Confidence 467999999889999998876654
No 366
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.94 E-value=1.8 Score=40.20 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=63.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCccccCC-HHHHHhccccCCCccEEEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVID 112 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g---~l~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVVID 112 (220)
||.|+|. |+.|..+++.+.+ .+.++.+ .|.... .+.. .+.. ...|+.++.. -.+.+. ++|+||
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~-~G~~V~~-sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~~~~~~------~~d~vv- 67 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHK-KGAEVTV-TDLKPN-EELEPSMGQLR--LNEGSVLHTGLHLEDLN------NADLVV- 67 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHH-CCCEEEE-EeCCCC-ccchhHHHHHh--hccCcEEEecCchHHhc------cCCEEE-
Confidence 6899997 9999998888765 5888764 674221 1111 1110 0235555421 123333 689877
Q ss_pred ccC--chhHHHHHHHHHHCCCcEE--------------EeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650 113 FTD--ASTVYDNVKQATAFGMRSV--------------VYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSI 167 (220)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~vV--------------igTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~ 167 (220)
.|+ |... +.+..|.+.|++++ ||-||-. -....-|..+-+..|..+++..|+..
T Consensus 68 ~sp~i~~~~-p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~ 139 (433)
T TIGR01087 68 KSPGIPPDH-PLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139 (433)
T ss_pred ECCCCCCCC-HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence 453 3332 44556666666653 3444431 11223344444555666667677544
No 367
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.90 E-value=0.31 Score=42.95 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=26.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
..+|.|.|++|.+|+.+++.+.+. +.++++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR-GYTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEE
Confidence 358999999999999999998864 78887654
No 368
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=93.86 E-value=0.22 Score=43.10 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.|.|++|.+|+.+++.+.+. +.+++.+..+.. + ++.-..++++++.. .++|+||.+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~-----~---------Dl~~~~~l~~~~~~----~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKE-----L---------DLTRQADVEAFFAK----EKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhC-CCcEEEeecccc-----C---------CCCCHHHHHHHHhc----cCCCEEEEee
Confidence 37899999999999999764 566654433210 1 12223456666653 4689999885
No 369
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.85 E-value=0.58 Score=40.68 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=25.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
||.|+|+ |.+|.++++.+.. .++.=.-++|.
T Consensus 1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVIDM 31 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 6999997 9999999999876 47766777884
No 370
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.79 E-value=0.4 Score=42.78 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~ 66 (220)
.+|.|.|++|.+|+.+++.+.+.. ..+++..
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~ 36 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY 36 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 589999999999999999998763 3676654
No 371
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=93.78 E-value=0.14 Score=46.00 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.+.||+|.||.|++||-+.-++...|.+.-.+.+|-
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 4568999999999999999988888999888888884
No 372
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.74 E-value=0.23 Score=45.02 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=25.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~ 69 (220)
.+||+|+|++|++|..++-.+....-+ ||+ .+|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQ-LLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEE-EEec
Confidence 469999998899999988877653222 454 6675
No 373
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.73 E-value=0.19 Score=44.68 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
.+.+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r 38 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIR 38 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEec
Confidence 3468999999999999999999874 889887654
No 374
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.70 E-value=0.52 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
||+|+|+ |..|..+++.+.. .|+.=.-++|.
T Consensus 1 kVLIvGa-GGLGs~vA~~La~-aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLG-WGVRHITFVDS 31 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence 7999998 9999999999876 47766667773
No 375
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.37 Score=40.92 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=26.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
|.++.|+|++|.+|+.+++.+.+. +.+++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~-G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE-GWRVGAY 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC-CCeEEEE
Confidence 457999999999999999998764 7777754
No 376
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.67 E-value=0.47 Score=38.53 Aligned_cols=81 Identities=17% Similarity=0.068 Sum_probs=47.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.||.|+|+ |++|...++.+.+ .+.+++ +++++. .+++.++. .+.. ...+++..- .++|+||-.|
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT 78 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT 78 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence 58999997 9999999998876 466776 445532 22332221 1111 223333221 3789888777
Q ss_pred CchhHHHHHHHHHHCCC
Q 027650 115 DASTVYDNVKQATAFGM 131 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~ 131 (220)
.-+.....+..+.+.+.
T Consensus 79 ~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 79 NQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 66666555554445454
No 377
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.67 E-value=0.6 Score=43.75 Aligned_cols=62 Identities=19% Similarity=0.093 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-.+|||+|. |++|+.+++.+... |+++.+ +|+.. .. . ..++....++++++. .+|+|+..
T Consensus 150 ~gktvGIiG~-G~IG~~vA~~~~~f-Gm~V~~-~d~~~--~~--~------~~~~~~~~~l~ell~------~sDiVslh 210 (409)
T PRK11790 150 RGKTLGIVGY-GHIGTQLSVLAESL-GMRVYF-YDIED--KL--P------LGNARQVGSLEELLA------QSDVVSLH 210 (409)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-ECCCc--cc--c------cCCceecCCHHHHHh------hCCEEEEc
Confidence 3468999996 99999999988765 899876 45421 00 0 112333458999996 78988854
Q ss_pred c
Q 027650 114 T 114 (220)
Q Consensus 114 T 114 (220)
.
T Consensus 211 ~ 211 (409)
T PRK11790 211 V 211 (409)
T ss_pred C
Confidence 3
No 378
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.66 E-value=0.57 Score=39.61 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=49.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
.||.|+|+ |.||...++.+.+. +.+++ +++++. .+.+.++.. ...+.. ...+++..- .++|+||-+|
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~~-ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l-----~~adlViaaT 78 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLKY-GAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI-----VDAFLVIAAT 78 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc-----CCceEEEEcC
Confidence 58999997 99999999988774 56665 445532 233333332 111222 112222211 3789988777
Q ss_pred CchhHHHHHHHHHHCCCcE
Q 027650 115 DASTVYDNVKQATAFGMRS 133 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~v 133 (220)
..+.....+...++.++.+
T Consensus 79 ~d~elN~~i~~~a~~~~lv 97 (202)
T PRK06718 79 NDPRVNEQVKEDLPENALF 97 (202)
T ss_pred CCHHHHHHHHHHHHhCCcE
Confidence 6666655554444667655
No 379
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.36 Score=41.69 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=26.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
+.+|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGTV 35 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh-CcCEEEEEe
Confidence 45799999999999999999876 488877654
No 380
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=93.60 E-value=0.56 Score=43.74 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=52.9
Q ss_pred EEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcC----C-------------------CCCCccccC---
Q 027650 40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDM----E-------------------QPLEIPVMS--- 92 (220)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~----~-------------------~~~gv~v~~--- 92 (220)
|.|+||-+|+...+.+.++|+ ++++|+..... ...+... . ...++.++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n----~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~ 76 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYN----IELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTD 76 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCC----HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHH
Confidence 579999999999999988765 99999987321 1111100 0 000122222
Q ss_pred CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (220)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig 136 (220)
.+.++... .++|+|+-...--+-..-...++++|+.+-..
T Consensus 77 ~l~~l~~~----~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA 116 (383)
T PRK12464 77 GLIAVATH----PGSDLVLSSVVGAAGLLPTIEALKAKKDIALA 116 (383)
T ss_pred HHHHHHcC----CCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence 23333332 45788885444444466677788888887654
No 381
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.59 E-value=0.19 Score=44.95 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=27.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEK-GYEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHC-CCEEEEEec
Confidence 7999999999999999999874 889887653
No 382
>PLN00203 glutamyl-tRNA reductase
Probab=93.54 E-value=0.22 Score=48.17 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=49.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
..||+|+|+ |.||+.+++.+... +++=+-+++++. ..+..+...-....+ ..++++.+++. ++|+||-
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~-G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs 335 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSK-GCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT 335 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhC-CCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence 468999997 99999999998864 654445566542 223333210000111 22456666664 7999997
Q ss_pred ccC---chhHHHHHHHHH
Q 027650 113 FTD---ASTVYDNVKQAT 127 (220)
Q Consensus 113 fT~---p~~~~~~~~~al 127 (220)
.|. |-...+.++.+.
T Consensus 336 AT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 336 STSSETPLFLKEHVEALP 353 (519)
T ss_pred ccCCCCCeeCHHHHHHhh
Confidence 652 333356666554
No 383
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.53 E-value=0.81 Score=40.55 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=64.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCccccC---CHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMS---DLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~~---dl~~~l~~~~~~~~~DVVI 111 (220)
.+|.|+|+ |.+|+.++..+.+. +++=+-+++++. ..+.+++.. +....+.... ++.+.+ .++|+||
T Consensus 126 k~vlvlGa-GGaarai~~aL~~~-G~~~i~I~nRt~--~ka~~La~~~~~~~~~~~~~~~~~~~~~~------~~~DiVI 195 (282)
T TIGR01809 126 FRGLVIGA-GGTSRAAVYALASL-GVTDITVINRNP--DKLSRLVDLGVQVGVITRLEGDSGGLAIE------KAAEVLV 195 (282)
T ss_pred ceEEEEcC-cHHHHHHHHHHHHc-CCCeEEEEeCCH--HHHHHHHHHhhhcCcceeccchhhhhhcc------cCCCEEE
Confidence 48999997 99999999988764 665556677642 223333211 0011122222 222333 2789999
Q ss_pred EccCchhHH--HHHHH----HH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650 112 DFTDASTVY--DNVKQ----AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (220)
Q Consensus 112 DfT~p~~~~--~~~~~----al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~ 179 (220)
..|+..... +.+.. .. ..+..+|.-- -+.+.+ ..|.+.|++.|.+++- .+++ |+.+.+.+.
T Consensus 196 naTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f 265 (282)
T TIGR01809 196 STVPADVPADYVDLFATVPFLLLKRKSSEGIFLDA-AYDPWP-TPLVAIVSAAGWRVIS----GLQM-LLHQGFAQF 265 (282)
T ss_pred ECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEE-eeCCCC-CHHHHHHHHCCCEEEC----cHHH-HHHHHHHHH
Confidence 776532211 11111 01 0122232111 122222 3477888888877664 5666 555555443
No 384
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.50 E-value=0.14 Score=48.17 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
+++||.|.|++|.+|+.+++.+.+. +.+++++
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~ 77 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKR-GYEVAIV 77 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEE
Confidence 3579999999999999999999874 7887764
No 385
>PRK14851 hypothetical protein; Provisional
Probab=93.48 E-value=0.66 Score=46.36 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=25.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..||+|+|+ |++|..++..+... |+.=.-++|.
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~-GVG~l~LvD~ 75 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRT-GIGRFHIADF 75 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHh-CCCeEEEEcC
Confidence 458999997 99999999988764 6544456663
No 386
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.48 E-value=3.3 Score=38.69 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=64.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCccccC--CHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVVID 112 (220)
--|+|+|. |+.|..+++.+.+ .+.++.+ .|.........++. .. .|++++. .-.+.+. ++|+||
T Consensus 7 ~~~~v~G~-G~sG~s~a~~L~~-~G~~v~~-~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~------~~d~vV- 73 (448)
T PRK03803 7 GLHIVVGL-GKTGLSVVRFLAR-QGIPFAV-MDSREQPPGLDTLA---REFPDVELRCGGFDCELLV------QASEII- 73 (448)
T ss_pred CeEEEEee-cHhHHHHHHHHHh-CCCeEEE-EeCCCCchhHHHHH---hhcCCcEEEeCCCChHHhc------CCCEEE-
Confidence 35999997 9999998887765 5887664 77432111112221 11 2566532 1223343 689877
Q ss_pred ccC--chhHHHHHHHHHHCCCcEE--------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650 113 FTD--ASTVYDNVKQATAFGMRSV--------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIG 168 (220)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~vV--------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~G 168 (220)
.|+ |.. .+.+..|.+.|++++ |+-||-+ + -...-|..+-++.|..+++..|+...
T Consensus 74 ~sp~i~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 74 ISPGLALD-TPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 453 332 234555556666553 3444431 1 12233444455566677787885444
No 387
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.45 E-value=0.6 Score=42.13 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=41.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-.+|+|+|. |++|+.+++.+... ++++.+ +++. +... .+ -+.++++++. .+|+|+..
T Consensus 147 ~gktvgIiG~-G~IG~~vA~~l~~f-gm~V~~-~~~~--~~~~----------~~-~~~~l~ell~------~sDiv~l~ 204 (317)
T PRK06487 147 EGKTLGLLGH-GELGGAVARLAEAF-GMRVLI-GQLP--GRPA----------RP-DRLPLDELLP------QVDALTLH 204 (317)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhC-CCEEEE-ECCC--CCcc----------cc-cccCHHHHHH------hCCEEEEC
Confidence 3358999996 99999999998765 889876 4542 1110 01 1358999996 79998854
Q ss_pred c
Q 027650 114 T 114 (220)
Q Consensus 114 T 114 (220)
.
T Consensus 205 l 205 (317)
T PRK06487 205 C 205 (317)
T ss_pred C
Confidence 4
No 388
>PRK06153 hypothetical protein; Provisional
Probab=93.43 E-value=0.54 Score=43.98 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||+|+|| |+.|..++..+....--+|+ ++|.
T Consensus 177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~ 208 (393)
T PRK06153 177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDG 208 (393)
T ss_pred CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECC
Confidence 59999998 99999999999887444554 6674
No 389
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.36 E-value=0.42 Score=43.23 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=25.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
||+|+|++|++|..++-.+....-..=...+|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 799999989999999988876543333346775
No 390
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.33 E-value=0.61 Score=42.40 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKAR 59 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~ 59 (220)
..+||+|+|++|.+|..++-.+...+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence 35899999988999999988776553
No 391
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.29 E-value=0.76 Score=42.12 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=60.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
.+|+|.|+ |++|..-++...+. +++++++-.+.. .-++++.. -.+|..||++-
T Consensus 183 ~~vgI~Gl-GGLGh~aVq~AKAM-G~rV~vis~~~~---------------------kkeea~~~----LGAd~fv~~~~ 235 (360)
T KOG0023|consen 183 KWVGIVGL-GGLGHMAVQYAKAM-GMRVTVISTSSK---------------------KKEEAIKS----LGADVFVDSTE 235 (360)
T ss_pred cEEEEecC-cccchHHHHHHHHh-CcEEEEEeCCch---------------------hHHHHHHh----cCcceeEEecC
Confidence 58999998 55999988877665 899987543321 12344443 25777777774
Q ss_pred chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 027650 116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (220)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia 162 (220)
.....+.+..+++-+++-|+- +++.-++.+-++.|.+|.-+++.
T Consensus 236 d~d~~~~~~~~~dg~~~~v~~---~a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 236 DPDIMKAIMKTTDGGIDTVSN---LAEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred CHHHHHHHHHhhcCcceeeee---ccccchHHHHHHhhcCCEEEEEe
Confidence 444556666666777666652 23333445666666666666643
No 392
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=93.20 E-value=0.64 Score=40.84 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=26.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~ 69 (220)
+|.|.|++|.+|+.+++.+.+. ...++++.+.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~ 34 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRA 34 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEcc
Confidence 5899999999999999999876 33678777643
No 393
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=93.19 E-value=0.99 Score=43.08 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=55.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHH---HhccccCCCccEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV---LGSISQSKARAVV 110 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~---l~~~~~~~~~DVV 110 (220)
.++.|+|+ |.-|+.+++.+..++ +++++|.+|.+..+. . ..|+|+..+.+++ ... ...|++
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~---~------i~gvPVlg~~d~l~~~~~~----~~v~vI 212 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDA---E------INMLPVIKDTEIIWDLNRT----GDVHYI 212 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCcccc---c------cCCCcccCCHHHHHHHHHh----CCCcEE
Confidence 57999997 999999999998765 789999998542221 1 2367777665533 221 356765
Q ss_pred EEccCch----hHHHHHHHHHHCCCcEEEeCC
Q 027650 111 IDFTDAS----TVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 111 IDfT~p~----~~~~~~~~al~~G~~vVigTt 138 (220)
| +.|. ...+.+..+.+.|+.-|.=.|
T Consensus 213 I--Aip~~~~~~r~~il~~l~~~gv~~V~vIP 242 (476)
T PRK15204 213 L--AYEYTELEKTHFWLRELSKHHCRSVTVVP 242 (476)
T ss_pred E--EeCcCcHHHHHHHHHHHhhcCCeEEEEeC
Confidence 4 3332 233667788888885332234
No 394
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.79 Score=38.32 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
+|.++.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~ 36 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAK-AGWDLALV 36 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence 456899999999999999999976 47776654
No 395
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.18 E-value=0.3 Score=43.81 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=26.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
|||+|+|+ |.+|..++..+....-..-+.++|+.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 58999997 99999999988765434555577863
No 396
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.13 E-value=0.44 Score=40.27 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|+|.|.|++|++|+.+++.+.+. +.+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEE
Confidence 57999999999999999998864 78877543
No 397
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.12 E-value=0.74 Score=39.75 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 4999999999999999999876 889988764
No 398
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.11 E-value=0.64 Score=46.60 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..-||+|+|+ |.||+.|+..+... +++++ ++|.
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~-G~~V~-l~d~ 344 (715)
T PRK11730 312 PVKQAAVLGA-GIMGGGIAYQSASK-GVPVI-MKDI 344 (715)
T ss_pred ccceEEEECC-chhHHHHHHHHHhC-CCeEE-EEeC
Confidence 3458999997 99999999877654 88776 4564
No 399
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.08 E-value=1.8 Score=36.80 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=26.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.+|.|.|++|.+|+.+++.+.+. +.+++...
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARA-GYRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 47999999999999999998864 88877654
No 400
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.03 E-value=0.55 Score=47.00 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
...||+|+|+ |.||+.++..+....+++++- +|.
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~ 341 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI 341 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence 3458999998 999999998877566888774 664
No 401
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.02 E-value=0.68 Score=41.99 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=26.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
||.|+|+ |.+|.++++.+.. .|+.=+.++|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal-~Gvg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVL-TGFGEIHIIDL 31 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHH-hcCCeEEEEcC
Confidence 6999998 9999999999875 48888888885
No 402
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.01 E-value=0.38 Score=43.34 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
||+|+|+ |++|..++-.+...+-+.=+.++|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 7999998 9999999988876554444447785
No 403
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.00 E-value=1.1 Score=43.43 Aligned_cols=124 Identities=8% Similarity=0.084 Sum_probs=65.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV 110 (220)
+=+|.|+|+ |++|+.+++.+.+. +.+++ ++|++. +...++. ..|.++ + +|.+ ++++.+ -.++|++
T Consensus 417 ~~hiiI~G~-G~~G~~la~~L~~~-g~~vv-vId~d~--~~~~~~~----~~g~~~i~GD~~~~~-~L~~a~-i~~a~~v 485 (558)
T PRK10669 417 CNHALLVGY-GRVGSLLGEKLLAA-GIPLV-VIETSR--TRVDELR----ERGIRAVLGNAANEE-IMQLAH-LDCARWL 485 (558)
T ss_pred CCCEEEECC-ChHHHHHHHHHHHC-CCCEE-EEECCH--HHHHHHH----HCCCeEEEcCCCCHH-HHHhcC-ccccCEE
Confidence 458999997 99999999998764 66665 566532 1222222 123332 2 2322 222110 1378877
Q ss_pred EEccCchhHHHHH-HHHHH-C-CCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650 111 IDFTDASTVYDNV-KQATA-F-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (220)
Q Consensus 111 IDfT~p~~~~~~~-~~al~-~-G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~ 175 (220)
+-.++-+....++ ..+.+ + .+++|.= .-++++.+.++ +.|+-.++.|..-++-.+.+.+
T Consensus 486 iv~~~~~~~~~~iv~~~~~~~~~~~iiar--~~~~~~~~~l~----~~Gad~vv~p~~~~a~~i~~~l 547 (558)
T PRK10669 486 LLTIPNGYEAGEIVASAREKRPDIEIIAR--AHYDDEVAYIT----ERGANQVVMGEREIARTMLELL 547 (558)
T ss_pred EEEcCChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHH----HcCCCEEEChHHHHHHHHHHHh
Confidence 6343332222222 22222 2 3445532 23455555554 4778889988876666544433
No 404
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.97 E-value=0.21 Score=43.52 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=41.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCC---CC--cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650 38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~---~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (220)
|+|+|+.|.||..++..+...+ ...=+.++|.+. .+ .|+...........+..++|+.+.+. ++|+|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCEE
Confidence 6899988999999999887655 222334667522 11 12222221100234555678777775 89998
Q ss_pred EE
Q 027650 111 ID 112 (220)
Q Consensus 111 ID 112 (220)
|.
T Consensus 75 v~ 76 (263)
T cd00650 75 II 76 (263)
T ss_pred EE
Confidence 85
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=92.93 E-value=1.1 Score=38.28 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
...+|.|.|++|++|+.+++.+.+..+..++...
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~ 40 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAA 40 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe
Confidence 4457999999999999999998887668877653
No 406
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.92 E-value=0.76 Score=39.50 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=47.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhhcCCCCCC-ccccCCHHHHHhcccc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSISQ 103 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~---~g~d------~g~l~g~~~~~g-v~v~~dl~~~l~~~~~ 103 (220)
.||.|+|+ |.+|+.+++.+... ++. =+.++|++. ..+. ..++.. ..+ -....++.+.+.
T Consensus 26 ~rvlvlGA-GgAg~aiA~~L~~~-G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l~---- 96 (226)
T cd05311 26 VKIVINGA-GAAGIAIARLLLAA-GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEALK---- 96 (226)
T ss_pred CEEEEECc-hHHHHHHHHHHHHc-CcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHHh----
Confidence 58999998 99999999998764 776 567788751 1110 011221 111 011136766664
Q ss_pred CCCccEEEEccCchhH-HHHHHHH
Q 027650 104 SKARAVVIDFTDASTV-YDNVKQA 126 (220)
Q Consensus 104 ~~~~DVVIDfT~p~~~-~~~~~~a 126 (220)
++|++|..|++... .+.++..
T Consensus 97 --~~dvlIgaT~~G~~~~~~l~~m 118 (226)
T cd05311 97 --GADVFIGVSRPGVVKKEMIKKM 118 (226)
T ss_pred --cCCEEEeCCCCCCCCHHHHHhh
Confidence 69999988764443 2444433
No 407
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=92.88 E-value=0.76 Score=45.28 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=75.1
Q ss_pred eEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 37 KVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
-|+|+|++++ +|..+.+.+.+..+=++..+- +. ..+ -.|++.|++..++-+ .+|+.|-.
T Consensus 12 svavigas~~~~~vg~~i~~nL~~~g~g~i~PVn-p~-----~~~------v~G~~ay~s~~~lp~------~~dlav~~ 73 (598)
T COG1042 12 SIAVIGASERPGKLGYEILRNLLEYGQGKIYPVN-PK-----YDE------VLGVKAYTSVADLPD------APDLAVIV 73 (598)
T ss_pred eEEEeeccCCcchhHHHHHHHHHhcCCCceEecC-cc-----ccc------cccccccchHhhCCC------CCCeeEEE
Confidence 5999999876 677888887766433444321 11 112 236778888888764 78988878
Q ss_pred cCchhHHHHHHHHHHCCCcEEEe-CCCCCH------HHHHHHHHHhhhcCceEEEcCC
Q 027650 114 TDASTVYDNVKQATAFGMRSVVY-VPHIQL------ETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVig-TtG~~~------e~~~~L~~aA~~~~v~vviapN 164 (220)
+++..+.+.+..|-+.|+...|= +.||.+ +-.+++.++|++.++.++- ||
T Consensus 74 v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rlig-Pn 130 (598)
T COG1042 74 VPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIG-PN 130 (598)
T ss_pred echhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEec-cc
Confidence 99999999999999999776544 446642 2334455588877777665 77
No 408
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.83 E-value=0.69 Score=39.36 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=25.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
|+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 1 m~vlItGas~gIG~aia~~l~~-~G~~V~~~ 30 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLK-KGARVVIS 30 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHH-cCCEEEEE
Confidence 5899999999999999999876 47886654
No 409
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.79 E-value=1 Score=38.55 Aligned_cols=79 Identities=23% Similarity=0.170 Sum_probs=47.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (220)
.+|.|.|++|.+|+.+++.+.+ .+..++.. +++. ....++. +.+. .+. +..|++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~~---------------~~~~------~~~~~~~D~~ 60 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA-LGARVAIG-DLDE--ALAKETA---------------AELG------LVVGGPLDVT 60 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHH---------------HHhc------cceEEEccCC
Confidence 5799999999999999999876 47776543 3321 1111110 0010 122 345778
Q ss_pred CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (220)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTtG 139 (220)
.++...+.+..+.+. ++.++|-..|
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777776666555443 5667775554
No 410
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.76 E-value=1.9 Score=42.38 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=67.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV 110 (220)
..+|.|+|+ |++|+.+++.+.+ .+.+++ ++|++. +.+..+. ..|.++ + ++.+ ++.+.+ -.++|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~ag-i~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMA-NKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLE-LLRAAG-AEKAEAI 468 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHH-HHHhcC-CccCCEE
Confidence 468999997 9999999998875 467766 466542 1222221 234333 2 2332 222111 1368887
Q ss_pred EEccCch-hHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650 111 IDFTDAS-TVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (220)
Q Consensus 111 IDfT~p~-~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l 171 (220)
|-.+.-+ .....+..+.+.. .++++ ...++++.++|++ .|+-.++..+|--+..+
T Consensus 469 v~~~~d~~~n~~i~~~~r~~~p~~~Iia--Ra~~~~~~~~L~~----~Ga~~vv~e~~es~l~l 526 (601)
T PRK03659 469 VITCNEPEDTMKIVELCQQHFPHLHILA--RARGRVEAHELLQ----AGVTQFSRETFSSALEL 526 (601)
T ss_pred EEEeCCHHHHHHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHh----CCCCEEEccHHHHHHHH
Confidence 7444332 2234445555543 34443 3456677677765 56677776766655544
No 411
>COG2403 Predicted GTPase [General function prediction only]
Probab=92.74 E-value=0.55 Score=43.87 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=66.3
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chh--hhhcCCCCCCccccC-----CHHHHHhccc
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIG--MVCDMEQPLEIPVMS-----DLTMVLGSIS 102 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~g--~l~g~~~~~gv~v~~-----dl~~~l~~~~ 102 (220)
+..+.||.+.|+.|+==..--..+...|.++++++..-...|- ... .+.|.-.+.|+|++. +++.++.+
T Consensus 3 m~a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire-- 80 (449)
T COG2403 3 MKARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIRE-- 80 (449)
T ss_pred CCCceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHH--
Confidence 4567899999996654333334456778899888776322211 111 133322367888853 47777765
Q ss_pred cCCCcc-EEEEcc--CchhHHHHHHHHHHCCCcEE
Q 027650 103 QSKARA-VVIDFT--DASTVYDNVKQATAFGMRSV 134 (220)
Q Consensus 103 ~~~~~D-VVIDfT--~p~~~~~~~~~al~~G~~vV 134 (220)
.+.| +|+|+| .++.....+...+..|....
T Consensus 81 --~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~ 113 (449)
T COG2403 81 --KDVDIVVLAYSDVSYEHVFRIASRVLSAGADFK 113 (449)
T ss_pred --cCCCeEEEEcccCCHHHHHHHHHHHHhCCceeE
Confidence 6899 899998 57777889999999997765
No 412
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.71 E-value=0.2 Score=47.00 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
..||.|+|+ |.||+.+++.+... +..-+-++.++. ..+..+...-....+..++++.+.+. ++|+||.+|
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~-g~~~I~V~nRt~--~ra~~La~~~~~~~~~~~~~l~~~l~------~aDiVI~aT 250 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTAL-APKQIMLANRTI--EKAQKITSAFRNASAHYLSELPQLIK------KADIIIAAV 250 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEECCCH--HHHHHHHHHhcCCeEecHHHHHHHhc------cCCEEEECc
Confidence 458999997 99999999999764 554455666542 22333332100011222566667775 799999776
Q ss_pred C
Q 027650 115 D 115 (220)
Q Consensus 115 ~ 115 (220)
.
T Consensus 251 ~ 251 (414)
T PRK13940 251 N 251 (414)
T ss_pred C
Confidence 4
No 413
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.66 E-value=0.43 Score=42.34 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=53.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---hcCCCCCCccccC---CHHHHHhccccCCCccE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDMEQPLEIPVMS---DLTMVLGSISQSKARAV 109 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l---~g~~~~~gv~v~~---dl~~~l~~~~~~~~~DV 109 (220)
-+|.|+|++|.+|..++..+.. .+.++++...+.. ....+ .|. ..+..+. ++.+.+.... ...+|+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~-~G~~Vi~~~~~~~---~~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~-~~gvd~ 224 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKL-KGCYVVGSAGSDE---KVDLLKNKLGF---DDAFNYKEEPDLDAALKRYF-PNGIDI 224 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHH---HHHHHHHhcCC---ceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence 3799999999999999886665 5888777654321 11111 121 1111121 3333332111 136899
Q ss_pred EEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigTt 138 (220)
++|+.......+.+......|.-+.+|..
T Consensus 225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence 99987654444444444455665556654
No 414
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.64 E-value=0.42 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA 58 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~ 58 (220)
.+||+|+|++|++|..++-.+...
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999999899999998877654
No 415
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=92.62 E-value=0.18 Score=41.76 Aligned_cols=72 Identities=25% Similarity=0.236 Sum_probs=41.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh-hcCC-CCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV-CDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l-~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
|.|.|++|.+|+.+++.+.+. +.+++.+..+.... ..... .... ...++.-.+++++++.. ..+|+||.+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~-g~~v~~~~~~~~~~-~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK-GHEVIVLSRSSNSE-SFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TTEEEEEESCSTGG-HHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHc-CCcccccccccccc-ccccccceEEEEEeeccccccccccccc----cCceEEEEeec
Confidence 789999999999999999864 67777555443211 11110 0000 00111112345566653 36799998864
No 416
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.57 E-value=0.52 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhc
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKA 58 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~ 58 (220)
.+||+|+|++|++|..++-.+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 689999998899999999877654
No 417
>PLN02686 cinnamoyl-CoA reductase
Probab=92.50 E-value=0.22 Score=45.47 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..+.+|.|.|++|.+|+.+++.+.+ .+.++++++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~-~G~~V~~~~r~ 86 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLR-HGYSVRIAVDT 86 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 4567999999999999999999886 48898876653
No 418
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.49 E-value=1.1 Score=39.63 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=52.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (220)
+|+|+|+ |.+|...+..+.. -+.+.+.++|... ... +.++ ... ++ +.++... ..+|++||++-.
T Consensus 147 ~vlV~G~-G~vG~~a~q~ak~-~G~~~v~~~~~~~--~rl-~~a~---~~~--~i-~~~~~~~-----~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGH-GTLGRLLARLTKA-AGGSPPAVWETNP--RRR-DGAT---GYE--VL-DPEKDPR-----RDYRAIYDASGD 210 (308)
T ss_pred cEEEECC-CHHHHHHHHHHHH-cCCceEEEeCCCH--HHH-Hhhh---hcc--cc-ChhhccC-----CCCCEEEECCCC
Confidence 6999996 9999999876665 4787776676421 111 1111 111 11 1111111 368999999875
Q ss_pred hhH-HHHHHHHHHCCCcEEEeCC
Q 027650 117 STV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 117 ~~~-~~~~~~al~~G~~vVigTt 138 (220)
... ...+......|+-+++|.+
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeec
Confidence 444 4555666667777778865
No 419
>PLN02928 oxidoreductase family protein
Probab=92.47 E-value=0.77 Score=42.02 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=43.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCCCCCCccccCCHHHHHhccccCC
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDMEQPLEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l--------~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (220)
...+|+|+|. |+||+.+++.+... |+++++ +|+... .+.... ...... .. .+.++++++.
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~af-G~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~L~ell~------ 225 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPF-GVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDE-KG-GHEDIYEFAG------ 225 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhC-CCEEEE-ECCCCC-hhhhhhhccccccccccccc-cC-cccCHHHHHh------
Confidence 3469999996 99999999998764 889886 465311 111000 000000 11 3568999996
Q ss_pred CccEEEEcc
Q 027650 106 ARAVVIDFT 114 (220)
Q Consensus 106 ~~DVVIDfT 114 (220)
.+|+|+-..
T Consensus 226 ~aDiVvl~l 234 (347)
T PLN02928 226 EADIVVLCC 234 (347)
T ss_pred hCCEEEECC
Confidence 799988544
No 420
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.43 E-value=7.2 Score=37.07 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=24.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||.|+|. |+.|..+++.+.. .+.++.+ +|.
T Consensus 8 ~~i~v~G~-G~sG~s~a~~L~~-~G~~v~~-~D~ 38 (498)
T PRK02006 8 PMVLVLGL-GESGLAMARWCAR-HGARLRV-ADT 38 (498)
T ss_pred CEEEEEee-cHhHHHHHHHHHH-CCCEEEE-EcC
Confidence 48999997 9999998887765 5788764 775
No 421
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.42 E-value=1.3 Score=39.72 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=40.2
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-----cCCC--CCCccccCCHHHHHhccccCCCcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-----DMEQ--PLEIPVMSDLTMVLGSISQSKARA 108 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-----g~~~--~~gv~v~~dl~~~l~~~~~~~~~D 108 (220)
+||+|+|+ |.||..++-.+....-.+ |-++|... ....++.. +... ...+..+.|+++ +. ++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi~~-~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~------~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDVVE-GIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA------NSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeCCC-ChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC------CCC
Confidence 59999997 999999998877653236 55677521 11111111 0000 112334578877 43 799
Q ss_pred EEEEc
Q 027650 109 VVIDF 113 (220)
Q Consensus 109 VVIDf 113 (220)
+||.+
T Consensus 72 iVIit 76 (305)
T TIGR01763 72 IVVIT 76 (305)
T ss_pred EEEEc
Confidence 88854
No 422
>PRK06953 short chain dehydrogenase; Provisional
Probab=92.40 E-value=0.89 Score=37.73 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=26.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|.++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~~ 32 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIATA 32 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHh-CCCEEEEEE
Confidence 45799999999999999999875 588877653
No 423
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=92.37 E-value=0.25 Score=45.18 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=60.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEEc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.++|+|+ |.+++.+++++...-+++=+-+++++.. .++....+ .+..+ +...+|.++++. ++|+|+-+
T Consensus 132 ~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l--~~~~~~~v~a~~s~~~av~------~aDiIvt~ 202 (330)
T COG2423 132 TLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL--RKRGGEAVGAADSAEEAVE------GADIVVTA 202 (330)
T ss_pred EEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH--HhhcCccceeccCHHHHhh------cCCEEEEe
Confidence 6999997 9999999999998888888888886421 11111111 11233 455788999986 79999955
Q ss_pred cCchhHHHHHHHHHHCCCcEE-Ee
Q 027650 114 TDASTVYDNVKQATAFGMRSV-VY 136 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV-ig 136 (220)
|+. ...-.....++.|.|+. +|
T Consensus 203 T~s-~~Pil~~~~l~~G~hI~aiG 225 (330)
T COG2423 203 TPS-TEPVLKAEWLKPGTHINAIG 225 (330)
T ss_pred cCC-CCCeecHhhcCCCcEEEecC
Confidence 543 32223355677898886 45
No 424
>PRK06988 putative formyltransferase; Provisional
Probab=92.37 E-value=0.36 Score=43.54 Aligned_cols=72 Identities=17% Similarity=0.331 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-C-CCc----chhhhhcCCCCCCccccC--CH-----HHHHhc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-VGE----DIGMVCDMEQPLEIPVMS--DL-----TMVLGS 100 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-~g~----d~g~l~g~~~~~gv~v~~--dl-----~~~l~~ 100 (220)
+||||++.| ++.+|....+.+.+ .++++++++... . .++ ++.+++ ...|++++. ++ .+.+..
T Consensus 1 ~~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 1 MKPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred CCcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHHh
Confidence 368999999 59999999998876 478999988642 1 111 223333 255777753 22 222332
Q ss_pred cccCCCccEEEEcc
Q 027650 101 ISQSKARAVVIDFT 114 (220)
Q Consensus 101 ~~~~~~~DVVIDfT 114 (220)
.++|++|-+.
T Consensus 76 ----~~~Dliv~~~ 85 (312)
T PRK06988 76 ----AAPDFIFSFY 85 (312)
T ss_pred ----cCCCEEEEeh
Confidence 4899887554
No 425
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.34 E-value=1.1 Score=40.26 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=43.0
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
.-.+|+|+|. |++|+.+++.+... ++++.+ +|+.. ... ..++. +.++++++. .+|+|+..
T Consensus 144 ~gktvGIiG~-G~IG~~vA~~~~~f-gm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh 203 (311)
T PRK08410 144 KGKKWGIIGL-GTIGKRVAKIAQAF-GAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIH 203 (311)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhc-CCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEe
Confidence 4468999996 99999999988765 889875 56531 110 11222 568999996 79998854
Q ss_pred c
Q 027650 114 T 114 (220)
Q Consensus 114 T 114 (220)
.
T Consensus 204 ~ 204 (311)
T PRK08410 204 A 204 (311)
T ss_pred C
Confidence 4
No 426
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=92.34 E-value=0.29 Score=45.25 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=60.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhh-hhcCCCCCCcccc---
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGM-VCDMEQPLEIPVM--- 91 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d----~g~-l~g~~~~~gv~v~--- 91 (220)
-.|.|+|| |+.|--.+..+.. -++-=.|++|.+. .|+. +.. +-.+.....|..|
T Consensus 67 s~VLVVGa-GGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~ 144 (427)
T KOG2017|consen 67 SSVLVVGA-GGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF 144 (427)
T ss_pred ccEEEEcc-CCCCCHHHHHHHH-cCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence 47999998 9999999888776 4777778888421 1111 000 1111111222222
Q ss_pred ---CCHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCCcEEEeCC
Q 027650 92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTt 138 (220)
++..+++. ..|||.|+|. +..-+=....|...|+|+|+|.-
T Consensus 145 L~~sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa 189 (427)
T KOG2017|consen 145 LSSSNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA 189 (427)
T ss_pred ccchhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence 23444553 7999999995 44445666889999999999875
No 427
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=92.33 E-value=1.6 Score=33.13 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=20.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|||.|+|. |.=-.+++..+.+.+.++=+.+.
T Consensus 1 MkVLviGs-GgREHAia~~l~~s~~v~~v~~a 31 (100)
T PF02844_consen 1 MKVLVIGS-GGREHAIAWKLSQSPSVEEVYVA 31 (100)
T ss_dssp EEEEEEES-SHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCCCEEEEe
Confidence 79999995 74444556667777777554443
No 428
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.33 E-value=1.3 Score=40.71 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=47.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
.||+|+|. |++|+.+++.+..- +..+..=-......+...+ .+.. +.|+++++. +.|++|...+
T Consensus 163 K~vgilG~-G~IG~~ia~rL~~F-g~~i~y~~r~~~~~~~~~~-------~~~~-~~d~~~~~~------~sD~ivv~~p 226 (336)
T KOG0069|consen 163 KTVGILGL-GRIGKAIAKRLKPF-GCVILYHSRTQLPPEEAYE-------YYAE-FVDIEELLA------NSDVIVVNCP 226 (336)
T ss_pred CEEEEecC-cHHHHHHHHhhhhc-cceeeeecccCCchhhHHH-------hccc-ccCHHHHHh------hCCEEEEecC
Confidence 38999997 99999999998874 3444432221211111111 1111 568999986 7998886543
Q ss_pred c-hhH--HHHHHHHHHCCCcEEE
Q 027650 116 A-STV--YDNVKQATAFGMRSVV 135 (220)
Q Consensus 116 p-~~~--~~~~~~al~~G~~vVi 135 (220)
- ..+ .-|-+.+...+..+|+
T Consensus 227 Lt~~T~~liNk~~~~~mk~g~vl 249 (336)
T KOG0069|consen 227 LTKETRHLINKKFIEKMKDGAVL 249 (336)
T ss_pred CCHHHHHHhhHHHHHhcCCCeEE
Confidence 2 222 2333444444444443
No 429
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.17 E-value=0.45 Score=42.96 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=25.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||+|+|+ |++|..++-.+...+-..=+.++|.
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 59999998 9999999988877655433446785
No 430
>PLN02602 lactate dehydrogenase
Probab=92.17 E-value=0.45 Score=43.79 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=25.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||+|+|+ |++|..++-.+...+-..=+.++|.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 69999997 9999999988776544444457785
No 431
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=92.15 E-value=0.4 Score=39.96 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG 65 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg 65 (220)
|+|.|.|++|++|+.+++.+.+. ++..++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999998775 4566554
No 432
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.15 E-value=0.24 Score=41.99 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=29.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
++|.|.|+||..|+.+++.+.+. +.+++++..+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 58999999999999999999887 8899988875
No 433
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.13 E-value=1.8 Score=38.10 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC---CHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVVID 112 (220)
-+|.|+|++|.+|...+..+.. .+.++++...+.. ....+...+ ...+..+. ++.+.+... ....+|+++|
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~-~G~~Vi~~~~s~~---~~~~~~~lG-a~~vi~~~~~~~~~~~~~~~-~~~gvdvv~d 213 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKL-KGCKVVGAAGSDE---KVAYLKKLG-FDVAFNYKTVKSLEETLKKA-SPDGYDCYFD 213 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHH---HHHHHHHcC-CCEEEeccccccHHHHHHHh-CCCCeEEEEE
Confidence 3799999889999999887655 5888877654321 111111111 00111122 333333221 0125899999
Q ss_pred ccCchhHHHHHHHHHH-CCCcEEEeCC
Q 027650 113 FTDASTVYDNVKQATA-FGMRSVVYVP 138 (220)
Q Consensus 113 fT~p~~~~~~~~~al~-~G~~vVigTt 138 (220)
++..... +....+++ .|.-+.+|..
T Consensus 214 ~~G~~~~-~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 214 NVGGEFS-NTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred CCCHHHH-HHHHHHhCcCcEEEEecch
Confidence 8765544 44444554 5555556653
No 434
>PRK07023 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.26 Score=41.47 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=27.7
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|++|.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVA 32 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHh-CCCEEEEEe
Confidence 57999999999999999999876 488887654
No 435
>PRK08017 oxidoreductase; Provisional
Probab=92.05 E-value=3.4 Score=34.65 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~ 33 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR-GYRVLAAC 33 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 6999999999999999999764 77876653
No 436
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.93 E-value=0.83 Score=37.96 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=28.0
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.+|.|.|++|.+|+.+++.+.+. +.+++.++++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r 38 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDI 38 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 458999999999999999988764 8888776454
No 437
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=91.92 E-value=0.78 Score=45.57 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=59.9
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------------C-------Ccchhh-----hhcCCCCCC---
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------------V-------GEDIGM-----VCDMEQPLE--- 87 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------------~-------g~d~g~-----l~g~~~~~g--- 87 (220)
..||+|+|| |..|..+++.+... |+.=..++|.+. . |+.-.+ +..+.....
T Consensus 338 ~~kVLIvGa-GGLGs~VA~~La~~-GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~ 415 (664)
T TIGR01381 338 QLKVLLLGA-GTLGCNVARCLIGW-GVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG 415 (664)
T ss_pred cCeEEEECC-cHHHHHHHHHHHHc-CCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence 469999998 99999999988764 776666777310 0 221100 000100000
Q ss_pred ----cc-----ccC-----------CHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCCCC
Q 027650 88 ----IP-----VMS-----------DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI 140 (220)
Q Consensus 88 ----v~-----v~~-----------dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTtG~ 140 (220)
+| +.. ++++++. +.|||+|++..-.. .-.-..|.++|+++|.+.-||
T Consensus 416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGf 483 (664)
T TIGR01381 416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGF 483 (664)
T ss_pred eeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 10 111 2445554 79999999965555 344478899999999775555
No 438
>PRK15076 alpha-galactosidase; Provisional
Probab=91.86 E-value=1.6 Score=41.26 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=76.4
Q ss_pred CceEEEEcCCCHHHHHH--HHHHHh---cCCcEEEEEEecCCCCcc-hhh----hhc-CCCCCCccccCCHHHHHhcccc
Q 027650 35 NIKVIINGAVKEIGRAA--VIAVTK---ARGMEVAGAIDSHSVGED-IGM----VCD-MEQPLEIPVMSDLTMVLGSISQ 103 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i--~~~i~~---~~~~eLvg~vd~~~~g~d-~g~----l~g-~~~~~gv~v~~dl~~~l~~~~~ 103 (220)
|+||+|+|+ |.||... ++.+.. .++.||+ ++|.+..-.+ ... ... .+....+..++|+.+++.
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evv-LvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~---- 74 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIA-LMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQ---- 74 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhC----
Confidence 579999998 9998443 334432 2334544 6775320011 111 111 011233455789888885
Q ss_pred CCCccEEEEccCch--hHH--HHHHHHHHCCCcE-EEeCCC---C-----C----HHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 104 SKARAVVIDFTDAS--TVY--DNVKQATAFGMRS-VVYVPH---I-----Q----LETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 104 ~~~~DVVIDfT~p~--~~~--~~~~~al~~G~~v-VigTtG---~-----~----~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
++|+||...... ... ..-+..+++|+-- +..|+| + + .+-.+.|++.|-+ .+++ |||
T Consensus 75 --dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~---a~ii--n~t 147 (431)
T PRK15076 75 --GADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD---ALLL--NYV 147 (431)
T ss_pred --CCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC---eEEE--EcC
Confidence 899988544332 112 3446778999863 224543 2 2 2333344444433 4444 566
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhH
Q 027650 167 IGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTS 205 (220)
Q Consensus 167 ~Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~ 205 (220)
--+-++..++. ++ +...++=.= |.|-+|+.
T Consensus 148 NP~divt~~~~---~~-~~~rviG~c-----~~~~~~~~ 177 (431)
T PRK15076 148 NPMAMNTWAMN---RY-PGIKTVGLC-----HSVQGTAE 177 (431)
T ss_pred ChHHHHHHHHh---cC-CCCCEEEEC-----CCHHHHHH
Confidence 66666665553 22 344455442 45666663
No 439
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=91.86 E-value=1.3 Score=41.66 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID 112 (220)
++|||.|+|. |+=...++..+.+. +.++..+..+...|. ..+. ..-+.+ ..|++++++- .+..++|.||-
T Consensus 1 ~~~kVLvlG~-G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a----~~~~~~~~~d~e~l~~~-~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGS-GGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS----KKYLFYDEKDYDLIEDF-ALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc----cceeecCCCCHHHHHHH-HHHhCCCEEEE
Confidence 4689999996 77677777777765 467777754322121 0011 000111 2466665431 12247998883
Q ss_pred ccCchhHHHHHHHHHHCCCcEE
Q 027650 113 FTDASTVYDNVKQATAFGMRSV 134 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV 134 (220)
...+......+..+.+.|++++
T Consensus 72 ~~d~~l~~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 72 GPDPVLATPLVNNLLKRGIKVA 93 (435)
T ss_pred CCChHHHHHHHHHHHHCCCcEE
Confidence 3222223344555667888876
No 440
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=91.83 E-value=0.3 Score=45.82 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred ceEEEEcCCCHHHHHHHH--HHH---hcCCcEEEEEEecCC-----CCcchhhhhc-CCCCCCccccCCHHHHHhccccC
Q 027650 36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHS-----VGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQS 104 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~--~i~---~~~~~eLvg~vd~~~-----~g~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~ 104 (220)
+||+|+|+ |.||....- .+. ...+.+|+ ++|.+. ...++..... .+....+..++|+++++.
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~----- 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD----- 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc-----
Confidence 58999997 999997443 344 34455654 567532 0111111111 111234556889999886
Q ss_pred CCccEEEEccCchhHH---HHHHHHHHCCCcEE
Q 027650 105 KARAVVIDFTDASTVY---DNVKQATAFGMRSV 134 (220)
Q Consensus 105 ~~~DVVIDfT~p~~~~---~~~~~al~~G~~vV 134 (220)
++|+||....+.... ..-+..+++|+---
T Consensus 74 -~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~ 105 (423)
T cd05297 74 -GADFVINTIQVGGHEYTETDFEIPEKYGYYQT 105 (423)
T ss_pred -CCCEEEEeeEecCccchhhhhhhHHHcCeeee
Confidence 899998544432222 22346677776533
No 441
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.80 E-value=2.5 Score=41.66 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=64.2
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV 110 (220)
.-+|.|+|+ ||+|+.+++.+.+ .+.+++. +|.+. +.+..+. ..|.++ + ++.+-+.+. + -.++|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vvv-ID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~a-g-i~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLS-SGVKMTV-LDHDP--DHIETLR----KFGMKVFYGDATRMDLLESA-G-AAKAEVL 468 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHh-CCCCEEE-EECCH--HHHHHHH----hcCCeEEEEeCCCHHHHHhc-C-CCcCCEE
Confidence 358999997 9999999998876 4677664 56532 1222221 234444 2 233322211 0 1368877
Q ss_pred EEccC-chhHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 111 IDFTD-ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
|-.+. ++.....+..+.+.. .++++ -..++++.++|+++ |+-.++.+.+.-+.
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~----Gad~v~~e~~e~sl 524 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA----GVEKPERETFEGAL 524 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC----CCCEEehhhHhHHH
Confidence 75553 333344455555543 34443 23556666677654 44555545554444
No 442
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.76 E-value=1.2 Score=33.31 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=54.4
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEEEEc
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVIDf 113 (220)
|.|+|+ |++|+.+++.+.+ .+.+++. +|.+. +...++. ..++.+ + .+.+.+.. .. -.++|.+|-.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~-a~-i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLER-AG-IEKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHH-TT-GGCESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhh-cC-ccccCEEEEc
Confidence 689997 9999999999988 5666665 44421 1122222 112222 2 23322221 00 1268877755
Q ss_pred cCchhH-HHHHHHHHH-CC-CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650 114 TDASTV-YDNVKQATA-FG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (220)
Q Consensus 114 T~p~~~-~~~~~~al~-~G-~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap 163 (220)
+.-+.. ...+..+.+ .+ .+++. .-.+++..+.|+ +.|+-.++.|
T Consensus 70 ~~~d~~n~~~~~~~r~~~~~~~ii~--~~~~~~~~~~l~----~~g~d~vi~P 116 (116)
T PF02254_consen 70 TDDDEENLLIALLARELNPDIRIIA--RVNDPENAELLR----QAGADHVISP 116 (116)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSEEEE--EESSHHHHHHHH----HTT-SEEEEH
T ss_pred cCCHHHHHHHHHHHHHHCCCCeEEE--EECCHHHHHHHH----HCCcCEEECc
Confidence 544433 334444444 33 44543 234555544444 3556666654
No 443
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.71 E-value=0.45 Score=43.89 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=30.4
Q ss_pred cccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650 26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (220)
Q Consensus 26 ~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (220)
..+..+.-...||+|+|+ |++|+..++.+... +.+ |-++|++
T Consensus 158 ~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~l-Ga~-V~v~d~~ 199 (370)
T TIGR00518 158 LLGGVPGVEPGDVTIIGG-GVVGTNAAKMANGL-GAT-VTILDIN 199 (370)
T ss_pred eecCCCCCCCceEEEEcC-CHHHHHHHHHHHHC-CCe-EEEEECC
Confidence 344444444568999997 99999999988765 677 4557753
No 444
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.67 E-value=5.6 Score=37.10 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=24.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
||.|+|+ |+.|...++.+.. .+.++. ++|.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~-~G~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKA-QGWEVV-VSDR 31 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECC
Confidence 7999997 9999998887765 578765 4774
No 445
>PLN02253 xanthoxin dehydrogenase
Probab=91.66 E-value=1.3 Score=37.95 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
.++.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus 19 k~~lItGas~gIG~~la~~l~~~-G~~v~~~ 48 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKH-GAKVCIV 48 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-CCEEEEE
Confidence 57999999999999999998864 7887764
No 446
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.61 E-value=1.2 Score=37.48 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
..+|.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~-~G~~Vi~~~ 46 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAA-KGARVALLD 46 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 35899999999999999999876 588877643
No 447
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.56 E-value=1.5 Score=39.06 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=64.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC-CCCCC--ccccCCHHHH--HhccccCCCccE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM-EQPLE--IPVMSDLTMV--LGSISQSKARAV 109 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~-~~~~g--v~v~~dl~~~--l~~~~~~~~~DV 109 (220)
.+|.|+|+ |+.++.++-.+.. .++.=+-+++++.. ...+..++.. ....+ +.+ .++++. +.. ...++|+
T Consensus 125 k~vlvlGa-GGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~aDi 199 (288)
T PRK12749 125 KTMVLLGA-GGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAE--ALASADI 199 (288)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhh--hcccCCE
Confidence 48999997 9999998877765 46655667776521 1123333210 01111 222 222211 110 0026899
Q ss_pred EEEccCchhHH---H--HH-HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650 110 VIDFTDASTVY---D--NV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (220)
Q Consensus 110 VIDfT~p~~~~---~--~~-~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~ 179 (220)
||..|+..... . .. ...+..+.-+ .-- -+++.+ ..|.+.|++.|.+++- .+++ |+.|.+.+.
T Consensus 200 vINaTp~Gm~~~~~~~~~~~~~~l~~~~~v-~D~-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-L~~Qa~~~f 267 (288)
T PRK12749 200 LTNGTKVGMKPLENESLVNDISLLHPGLLV-TEC-VYNPHM-TKLLQQAQQAGCKTID----GYGM-LLWQGAEQF 267 (288)
T ss_pred EEECCCCCCCCCCCCCCCCcHHHCCCCCEE-EEe-cCCCcc-CHHHHHHHHCCCeEEC----CHHH-HHHHHHHHH
Confidence 99887643211 0 00 1122333222 110 123322 3477778887877653 5666 556666544
No 448
>PF13941 MutL: MutL protein
Probab=91.54 E-value=3.4 Score=39.48 Aligned_cols=121 Identities=11% Similarity=0.151 Sum_probs=80.5
Q ss_pred ccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHH
Q 027650 19 VKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL 98 (220)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l 98 (220)
........||++.-+ +|+.++|..-.|-...++.+....+..++.++..... ..+++++.
T Consensus 62 ~~~~~~la~SSAaGG--Lrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~------------------~~~l~~i~ 121 (457)
T PF13941_consen 62 DGYDKVLACSSAAGG--LRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELT------------------EEDLEEIR 121 (457)
T ss_pred cCceEEEEECCCCCc--ceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCC------------------HHHHHHHh
Confidence 445567888887644 5899999988898888888888889999888764321 22445554
Q ss_pred hccccCCCccEEEEcc-----CchhHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650 99 GSISQSKARAVVIDFT-----DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (220)
Q Consensus 99 ~~~~~~~~~DVVIDfT-----~p~~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~ 167 (220)
. .+||+|+-.- ..+....|++...+.+ +|+|.. -+.+-.++++++-++.+.++++.+|-=+
T Consensus 122 ~-----~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyA---GN~~a~~~v~~il~~~~~~~~~~~NV~P 189 (457)
T PF13941_consen 122 E-----IRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYA---GNKAAQDEVEEILEKAGKEVVITENVMP 189 (457)
T ss_pred c-----cCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEE---CCHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 4 4788776432 4555667776665554 455542 3444556666666667788888888533
No 449
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.54 E-value=1.3 Score=40.17 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=24.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (220)
+||+|+|+ |++|+.++-.+....=. ||+ ++|.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~-LiDi 33 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELV-LIDI 33 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEE-EEEc
Confidence 58999998 99999998888544333 444 6774
No 450
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.53 E-value=0.85 Score=40.63 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=65.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC---cccc--CCHHHHHhccccCCCccE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE---IPVM--SDLTMVLGSISQSKARAV 109 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~g---v~v~--~dl~~~l~~~~~~~~~DV 109 (220)
.+|.|+|+ |+.|+.++-.+.. .++.-+-+++++. ..+.++... ....+ +... .++++.+. .+|+
T Consensus 128 k~vlilGa-GGaarAi~~aL~~-~g~~~i~i~nR~~--~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~------~~di 197 (283)
T PRK14027 128 DSVVQVGA-GGVGNAVAYALVT-HGVQKLQVADLDT--SRAQALADVINNAVGREAVVGVDARGIEDVIA------AADG 197 (283)
T ss_pred CeEEEECC-cHHHHHHHHHHHH-CCCCEEEEEcCCH--HHHHHHHHHHhhccCcceEEecCHhHHHHHHh------hcCE
Confidence 48999997 9999999988876 4665566777642 222233210 00111 1111 12233333 6899
Q ss_pred EEEccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650 110 VIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (220)
Q Consensus 110 VIDfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~ 179 (220)
||++|+.... ...-...+..+ .+|.-- -+++.+ ..|.+.|++.|.+++- .+++ |+.|.+.+.
T Consensus 198 vINaTp~Gm~~~~~~~~~~~~l~~~-~~v~D~-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f 263 (283)
T PRK14027 198 VVNATPMGMPAHPGTAFDVSCLTKD-HWVGDV-VYMPIE-TELLKAARALGCETLD----GTRM-AIHQAVDAF 263 (283)
T ss_pred EEEcCCCCCCCCCCCCCCHHHcCCC-cEEEEc-ccCCCC-CHHHHHHHHCCCEEEc----cHHH-HHHHHHHHH
Confidence 9998853211 00001122222 333211 122221 3477888888877654 5666 556655444
No 451
>PRK07578 short chain dehydrogenase; Provisional
Probab=91.53 E-value=1.3 Score=36.08 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=24.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|++.|.|++|++|+.+++.+.+. .+++...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 47999999999999999998876 6666543
No 452
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.50 E-value=1.1 Score=38.76 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=48.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccc---cCCHHHHHhccccCCCccEEEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVVID 112 (220)
+|+|+|+ |.+|...+..+.. -+.+ +++ ++... +.. +++ ..+|+.. +.+..+.+.++.....+|++||
T Consensus 123 ~VlV~G~-G~vG~~~~~~ak~-~G~~~Vi~-~~~~~--~r~-~~a---~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 123 RVLVVGA-GMLGLTAAAAAAA-AGAARVVA-ADPSP--DRR-ELA---LSFGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred EEEEECC-CHHHHHHHHHHHH-cCCCEEEE-ECCCH--HHH-HHH---HHcCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 7999997 9999998887665 4776 544 45321 111 111 0122211 1222222211101135899999
Q ss_pred ccCchhHHHHHHHHH-HCCCcEEEeCC
Q 027650 113 FTDASTVYDNVKQAT-AFGMRSVVYVP 138 (220)
Q Consensus 113 fT~p~~~~~~~~~al-~~G~~vVigTt 138 (220)
++-.....+.+..++ ..|.-+++|..
T Consensus 194 ~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 194 FSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 885444444444444 55666667753
No 453
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.44 E-value=1.2 Score=39.15 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=26.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~-G~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-GATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence 57999999999999999998764 78887653
No 454
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=91.39 E-value=2.7 Score=40.36 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCC-CCCCc---cccCCH-H------
Q 027650 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME-QPLEI---PVMSDL-T------ 95 (220)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~-~~~gv---~v~~dl-~------ 95 (220)
...-.||.|-|+ |+.|...++.+.+ ++-.++++.|. +..|-|..++..+. .+..+ +-.... +
T Consensus 248 ~~kgkr~~i~G~-Gnv~~~aa~~l~~-~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~ 325 (514)
T KOG2250|consen 248 GIKGKRVVIQGF-GNVGGHAAKKLSE-KGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGL 325 (514)
T ss_pred CcCceEEEEeCC-CchHHHHHHHHHh-cCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCccccccC
Confidence 344468888886 9999988877764 79999999994 44577776665431 01111 111111 1
Q ss_pred --HHHhccccCCCccEEEEccCch-hHHHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650 96 --MVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (220)
Q Consensus 96 --~~l~~~~~~~~~DVVIDfT~p~-~~~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS 166 (220)
..+. .++|+.+=+..-. ...+++......|++.|++-. + .++|-.+-|++. .|++.|..+
T Consensus 326 ~~~~~v-----~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~------gv~i~Pd~~ 390 (514)
T KOG2250|consen 326 PPWTLV-----EKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKA------GVLIIPDIY 390 (514)
T ss_pred cchhhH-----hhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhC------CeEEechhh
Confidence 2232 3799988776544 447999999999999998765 3 355544444432 555555433
No 455
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.38 E-value=0.72 Score=40.74 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=51.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID 112 (220)
-+|.|+|++|.+|...+..+.. -+. ++++...++.....+.+-.|. ..+..+ .++.+.+.++. ...+|+++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~-~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL-LGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence 4799999999999999887665 477 787765432100011110221 111111 23333332211 136899999
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEeC
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVYV 137 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigT 137 (220)
++......+.+......|.=+.+|.
T Consensus 231 ~~g~~~~~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 231 NVGGEISDTVISQMNENSHIILCGQ 255 (345)
T ss_pred CCCcHHHHHHHHHhccCCEEEEEee
Confidence 8765544344444444555555664
No 456
>PRK07589 ornithine cyclodeaminase; Validated
Probab=91.37 E-value=0.5 Score=43.43 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCC-CCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~-~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
-+++|+|+ |..++.+++++.....++=+-++++... .+..+.. +.. ...+.+.+++++++. ++|+|+=.
T Consensus 130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~--~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta 200 (346)
T PRK07589 130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPA--ATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV 200 (346)
T ss_pred cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHH--HHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence 47999996 9999999998887777888888886421 1112111 111 133555789999986 79999955
Q ss_pred cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (220)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-igT 137 (220)
|+.....+.+ ...++.|.|+. ||.
T Consensus 201 T~S~~~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 201 TADKTNATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred cCCCCCCceecHHHcCCCcEEEecCC
Confidence 5322111222 24568899886 453
No 457
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.36 E-value=1.4 Score=44.27 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..-||+|+|+ |-||..|+..+... +++++ ++|.
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~-G~~V~-l~d~ 344 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASK-GTPIV-MKDI 344 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhC-CCeEE-EEeC
Confidence 4458999997 99999999887764 88877 4563
No 458
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.35 E-value=1.9 Score=40.56 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh----hhcCCCCCCccccCCHHHHH
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM----VCDMEQPLEIPVMSDLTMVL 98 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~g~----l~g~~~~~gv~v~~dl~~~l 98 (220)
.+|+|+|- |++|--++-.... .++.++|+ |-+ ..|+ +..+ ... ......++|.+++-
T Consensus 10 ~~I~ViGL-GYVGLPlA~~fA~-~G~~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~---~g~lraTtd~~~l~ 83 (436)
T COG0677 10 ATIGVIGL-GYVGLPLAAAFAS-AGFKVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVE---SGKLRATTDPEELK 83 (436)
T ss_pred eEEEEEcc-ccccHHHHHHHHH-cCCceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHh---cCCceEecChhhcc
Confidence 79999995 9999998876654 58999985 521 1121 1111 111 11245566776653
Q ss_pred hccccCCCccEEEEccC--------ch-----hHHHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHH
Q 027650 99 GSISQSKARAVVIDFTD--------AS-----TVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF 151 (220)
Q Consensus 99 ~~~~~~~~~DVVIDfT~--------p~-----~~~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~a 151 (220)
.+|++|.+-+ |+ ...+.+...|+.|--||++.| |-+++-...|.+.
T Consensus 84 -------~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 84 -------ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred -------cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 6898886532 22 234556677899999999987 7788777776664
No 459
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=91.34 E-value=1.8 Score=40.95 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=66.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh--hcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV--CDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l--~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
-+|.|+|+ |.+|.++++.+.. +|+.=+-++|.+.. ..|++.. +.. +..|-+-.....+.+.+ -++||-++
T Consensus 21 s~VlliG~-gglGsEilKNLvL-~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~e----LNp~V~i~ 93 (425)
T cd01493 21 AHVCLLNA-TATGTEILKNLVL-PGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQE----LNPDVNGS 93 (425)
T ss_pred CeEEEEcC-cHHHHHHHHHHHH-cCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHHH----HCCCCEEE
Confidence 48999997 8899999999875 78877778886321 1222210 000 01111111111222322 36777665
Q ss_pred cc--CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650 113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (220)
Q Consensus 113 fT--~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN 164 (220)
+- .++......... -.+..+||.+ ..+......|.++|++.++|++.+..
T Consensus 94 ~~~e~~~~ll~~~~~f-~~~fdiVI~t-~~~~~~~~~L~~~c~~~~iPlI~~~s 145 (425)
T cd01493 94 AVEESPEALLDNDPSF-FSQFTVVIAT-NLPESTLLRLADVLWSANIPLLYVRS 145 (425)
T ss_pred EEecccchhhhhHHHH-hcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 53 233322222221 2345677754 34556667788888888888886544
No 460
>PRK07877 hypothetical protein; Provisional
Probab=91.34 E-value=1.6 Score=43.92 Aligned_cols=95 Identities=16% Similarity=0.245 Sum_probs=54.5
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---------------CCcchh-----hhhcCCCCCCcccc--
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---------------VGEDIG-----MVCDMEQPLEIPVM-- 91 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---------------~g~d~g-----~l~g~~~~~gv~v~-- 91 (220)
..||+|+|+ | .|..++..+... ++ -=.-++|.+. .|+.-. .+..+.....|..+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~Lara-GvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAE-GLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHc-cCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 468999998 8 999999888754 53 3334566321 111100 01111111122222
Q ss_pred ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
+++++++. ++|+|||++..-.. +..-..|.++|+|+|.|+.
T Consensus 184 ~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 184 GLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred cCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 24555654 68888888754433 4444778888888888775
No 461
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.28 E-value=1.2 Score=41.34 Aligned_cols=136 Identities=14% Similarity=0.119 Sum_probs=70.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (220)
.||.|+|. |++|..+++.+.+ .+.++. ++|............+ + ....+.+.... ++|++|-...
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~-~G~~V~-g~D~~~~~~~~~~~~~--~----~~~~~~~~~~~------~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQ-KGVYVI-GVDKSLEALQSCPYIH--E----RYLENAEEFPE------QVDLVVRSPG 68 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHH-CCCEEE-EEeCCccccchhHHHh--h----hhcCCcHHHhc------CCCEEEECCC
Confidence 48999997 9999999988875 466755 4665321100000000 0 01122223332 6788774332
Q ss_pred chhHHHHHHHHHHCCCcEEE-----------------eCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHH
Q 027650 116 ASTVYDNVKQATAFGMRSVV-----------------YVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (220)
Q Consensus 116 p~~~~~~~~~al~~G~~vVi-----------------gTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a 176 (220)
.....+.+..|++.|+++|. |-||-+ --..+-|..+-++.|.+.....| +|+.++..
T Consensus 69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~-- 144 (418)
T PRK00683 69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDG-- 144 (418)
T ss_pred CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHH--
Confidence 33335666666666666542 223211 01223344444555666667677 66655432
Q ss_pred HHhcCCCCCeEEEeccCC
Q 027650 177 ISASFHYKNVEIVESRPN 194 (220)
Q Consensus 177 ~~~~~~~~diEIiE~HH~ 194 (220)
.. ..|+-|+|.=.+
T Consensus 145 --~~--~~~~~V~E~~s~ 158 (418)
T PRK00683 145 --MQ--QPGVRVVEISSF 158 (418)
T ss_pred --hh--cCCEEEEEechh
Confidence 11 146667887544
No 462
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=91.25 E-value=1.4 Score=40.78 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=46.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEEcc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
|||+|+|. |.-+..+++.+...+ ..+..++.+...|. ..... ..-+. -+.|.+.+++- .+..++|++|-..
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~d~~~l~~~-~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLAK---NKNVAISITDIEALVEF-AKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhcc---cccccCCCCCHHHHHHH-HHHhCCCEEEECC
Confidence 69999996 888999999987753 33333344432221 11110 00011 13565554321 1124788777332
Q ss_pred CchhHHHHHHHHHHCCCcEE
Q 027650 115 DASTVYDNVKQATAFGMRSV 134 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV 134 (220)
.-.........+.+.|++++
T Consensus 73 e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 73 EAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred chHHHHHHHHHHHHCCCeEE
Confidence 21111234455566777655
No 463
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=91.22 E-value=3.8 Score=39.17 Aligned_cols=119 Identities=14% Similarity=0.122 Sum_probs=81.5
Q ss_pred ccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccc
Q 027650 23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS 102 (220)
Q Consensus 23 ~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~ 102 (220)
....||++.-+ +|+.++|....|-.+-++.+....+..+..++..+.. -.+++++..
T Consensus 62 ~~~acSSAaGG--Lkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~------------------~~~l~~I~~--- 118 (463)
T TIGR01319 62 AKKACSSAAGG--LAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLN------------------NKDIEAIEE--- 118 (463)
T ss_pred eEEEEcccCCC--hheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCC------------------HHHHHHHhh---
Confidence 56688887644 6899999999999888888888889888887764321 124556655
Q ss_pred cCCCccEEEEcc-----CchhHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650 103 QSKARAVVIDFT-----DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (220)
Q Consensus 103 ~~~~~DVVIDfT-----~p~~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv 169 (220)
.+||+|+-.- ..+....|++...+.+ +|||.. -+.+-.++++++-.++++.+++.+|-=+-+
T Consensus 119 --~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyA---GN~~a~~~V~~il~~~~~~~~i~eNV~P~i 187 (463)
T TIGR01319 119 --SNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVA---GNKDIQDEVQEIFDHADIFYRITDNVLPDL 187 (463)
T ss_pred --cCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEe---CCHHHHHHHHHHHhcCCceEEecCCcCCCC
Confidence 4899887332 3455567776666654 566652 344445666666667788988888854444
No 464
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.17 E-value=5.3 Score=37.82 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=24.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||+|+|. |+-|+..++.+. . +.+++ ++|.
T Consensus 7 ~~v~v~G~-G~sG~a~~~~L~-~-g~~v~-v~D~ 36 (454)
T PRK01368 7 QKIGVFGL-GKTGISVYEELQ-N-KYDVI-VYDD 36 (454)
T ss_pred CEEEEEee-cHHHHHHHHHHh-C-CCEEE-EECC
Confidence 48999996 999999999988 4 88765 5773
No 465
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=91.02 E-value=0.57 Score=42.49 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=49.9
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccCc
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTDA 116 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~p 116 (220)
.+|.|+|.++|+..++.++. .|+.++ ++.|+. +.|- .+..++++.-. .+.. +++|||.+
T Consensus 52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt~-----~KL~--------~v~kEI~~~~~-----vev~~i~~Dft~~ 111 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRTQ-----EKLE--------AVAKEIEEKYK-----VEVRIIAIDFTKG 111 (312)
T ss_pred EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCCH-----HHHH--------HHHHHHHHHhC-----cEEEEEEEecCCC
Confidence 67899999999999999987 799955 454431 2211 01112222211 1233 57899998
Q ss_pred hhHHHHHHHHHH-CCCcEEEeCCC
Q 027650 117 STVYDNVKQATA-FGMRSVVYVPH 139 (220)
Q Consensus 117 ~~~~~~~~~al~-~G~~vVigTtG 139 (220)
+..++.++..+. -.+-++|-.-|
T Consensus 112 ~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 112 DEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred chhHHHHHHHhcCCceEEEEeccc
Confidence 887776655444 44666655544
No 466
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.01 E-value=1 Score=42.29 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=47.9
Q ss_pred CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccEEEE
Q 027650 35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVID 112 (220)
+.||.|+|. |+.|.. +++.+.+ .+.++.+ .|.... ....++. ..|+.++. ...+.+. ++|+||
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~~-~G~~V~~-~D~~~~-~~~~~l~----~~gi~~~~~~~~~~~~------~~d~vv- 71 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLLN-LGYKVSG-SDLKES-AVTQRLL----ELGAIIFIGHDAENIK------DADVVV- 71 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHHh-CCCeEEE-ECCCCC-hHHHHHH----HCCCEEeCCCCHHHCC------CCCEEE-
Confidence 358999997 999999 6887765 5888764 664321 1222322 34555542 2223333 689887
Q ss_pred ccC--chhHHHHHHHHHHCCCcEE
Q 027650 113 FTD--ASTVYDNVKQATAFGMRSV 134 (220)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~vV 134 (220)
.|+ |.. .+.++.|.++|++++
T Consensus 72 ~spgi~~~-~~~~~~a~~~~i~i~ 94 (461)
T PRK00421 72 YSSAIPDD-NPELVAARELGIPVV 94 (461)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEE
Confidence 443 322 234455555665553
No 467
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=91.00 E-value=3.5 Score=37.91 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCC---cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchh-HHHHH
Q 027650 48 GRAAVIAVTKARGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNV 123 (220)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~g---~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~ 123 (220)
|+.+++.+.. .+++|. ++|+...- .....+. ..|+.+.++..++.. ++|+||-+.+-.. +.+.+
T Consensus 32 GspMArnLlk-AGheV~-V~Drnrsa~e~e~~e~La----eaGA~~AaS~aEAAa------~ADVVIL~LPd~aaV~eVl 99 (341)
T TIGR01724 32 GSRMAIEFAM-AGHDVV-LAEPNREFMSDDLWKKVE----DAGVKVVSDDKEAAK------HGEIHVLFTPFGKGTFSIA 99 (341)
T ss_pred HHHHHHHHHH-CCCEEE-EEeCChhhhhhhhhHHHH----HCCCeecCCHHHHHh------CCCEEEEecCCHHHHHHHH
Confidence 6677777765 488886 56653210 0111232 346777888888876 7999985443222 23443
Q ss_pred H---HHHHCCCcEEEeCCCCCHHHHHH
Q 027650 124 K---QATAFGMRSVVYVPHIQLETVSA 147 (220)
Q Consensus 124 ~---~al~~G~~vVigTtG~~~e~~~~ 147 (220)
. ..+..|. +||-++-.+++...+
T Consensus 100 ~GLaa~L~~Ga-IVID~STIsP~t~~~ 125 (341)
T TIGR01724 100 RTIIEHVPENA-VICNTCTVSPVVLYY 125 (341)
T ss_pred HHHHhcCCCCC-EEEECCCCCHHHHHH
Confidence 2 3344564 555555555544444
No 468
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.90 E-value=0.73 Score=41.15 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=69.4
Q ss_pred eEE-EEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCCCCccc--cC-CHHHHHhccccCCCccEEE
Q 027650 37 KVI-INGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQPLEIPV--MS-DLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 37 kV~-V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~~~gv~v--~~-dl~~~l~~~~~~~~~DVVI 111 (220)
|++ |.|+||.+|++.+.++..+|.++|.-.-. ....|+....-....+..-.|- .+ ..+++-.+ ...++|+|+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~--~F~ecDIvf 82 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTAD--SFNECDIVF 82 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChh--hcccccEEE
Confidence 566 99999999999999999999988765522 2344554321110100000110 00 11222111 113688776
Q ss_pred EccC-chhHHHHHHHHHHCCCcEEEeCC-------------CCCHHHHHHHHHHh--hhcCceEEEc-CCCcHHHH
Q 027650 112 DFTD-ASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFC--DKASMGCLIA-PTLSIGSI 170 (220)
Q Consensus 112 DfT~-p~~~~~~~~~al~~G~~vVigTt-------------G~~~e~~~~L~~aA--~~~~v~vvia-pNfS~Gv~ 170 (220)
|.. .+-.-+.-+.+.++|+-+|.-.. -.++|.++-|+.-- .+.+-+.+|+ ||-|.-+.
T Consensus 83 -sgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~ 157 (361)
T KOG4777|consen 83 -SGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAIC 157 (361)
T ss_pred -ecCCchhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeE
Confidence 433 33334556777777776665432 33666655544321 1234455554 78776654
No 469
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.88 E-value=0.57 Score=44.12 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=24.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||.|+|+ |..|..+++.+.+ .+.+++ ++|.
T Consensus 17 ~~v~viG~-G~~G~~~A~~L~~-~G~~V~-~~d~ 47 (480)
T PRK01438 17 LRVVVAGL-GVSGFAAADALLE-LGARVT-VVDD 47 (480)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeC
Confidence 48999997 9999999988875 578865 4563
No 470
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.80 E-value=1.2 Score=41.74 Aligned_cols=31 Identities=32% Similarity=0.304 Sum_probs=24.4
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
.||.|+|. |+.|...++.+.. .+.++. ++|.
T Consensus 10 ~~i~viG~-G~~G~~~a~~l~~-~G~~v~-~~D~ 40 (460)
T PRK01390 10 KTVAVFGL-GGSGLATARALVA-GGAEVI-AWDD 40 (460)
T ss_pred CEEEEEee-cHhHHHHHHHHHH-CCCEEE-EECC
Confidence 48999997 9999999887765 478755 4674
No 471
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=90.78 E-value=2.7 Score=38.52 Aligned_cols=91 Identities=16% Similarity=0.049 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCC--c-chhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchh-HHHHH
Q 027650 48 GRAAVIAVTKARGMEVAGAIDSHSVG--E-DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNV 123 (220)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~g--~-d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~ 123 (220)
|..++..+.+. +.++.. +|++... . ....+. ..|+.+.+|..++.. ++|+||-+.++.. ..+.+
T Consensus 32 G~~MA~~La~a-G~~V~v-~Dr~~~~l~~~~~~~l~----~~Gi~~asd~~eaa~------~ADvVIlaVP~~~~v~~Vl 99 (342)
T PRK12557 32 GSRMAIEFAEA-GHDVVL-AEPNRSILSEELWKKVE----DAGVKVVSDDAEAAK------HGEIHILFTPFGKKTVEIA 99 (342)
T ss_pred HHHHHHHHHhC-CCeEEE-EECCHHHhhHHHHHHHH----HCCCEEeCCHHHHHh------CCCEEEEECCCcHHHHHHH
Confidence 55666666553 666654 5653210 0 111121 346777788888775 7999996666555 33443
Q ss_pred H---HHHHCCCcEEEeCCCCCHHHH-HHHHHH
Q 027650 124 K---QATAFGMRSVVYVPHIQLETV-SALSAF 151 (220)
Q Consensus 124 ~---~al~~G~~vVigTtG~~~e~~-~~L~~a 151 (220)
. ..+..|.-+| -++..++... +.+.+.
T Consensus 100 ~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 100 KNILPHLPENAVIC-NTCTVSPVVLYYSLEGE 130 (342)
T ss_pred HHHHhhCCCCCEEE-EecCCCHHHHHHHHHHH
Confidence 3 3334555444 4444455544 455444
No 472
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.78 E-value=0.97 Score=37.26 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCHH-HHHHHHHHHhcCCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEI-GRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrM-G~~i~~~i~~~~~~eLvg~vd~ 69 (220)
-...||.|+|+ |.| |+.+++.+.+. +.++ -++++
T Consensus 42 l~gk~vlViG~-G~~~G~~~a~~L~~~-g~~V-~v~~r 76 (168)
T cd01080 42 LAGKKVVVVGR-SNIVGKPLAALLLNR-NATV-TVCHS 76 (168)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhhC-CCEE-EEEEC
Confidence 34469999997 987 88899988764 6664 34544
No 473
>PRK08219 short chain dehydrogenase; Provisional
Probab=90.77 E-value=0.41 Score=39.41 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.1
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
|+++.|.|++|.+|+.+++.+.+. .+++++.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence 468999999999999999999876 7766654
No 474
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.77 E-value=1.7 Score=39.12 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=53.0
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCccccC---CHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMS---DLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVVI 111 (220)
-+|.|.|++|.+|...+..+.. -+.++++...+. .....+. .++ ...+.-+. ++.+.+.... ...+|+++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~-~G~~Vi~~~~~~---~k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~-~~gvD~v~ 233 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKL-HGCYVVGSAGSS---QKVDLLKNKLG-FDEAFNYKEEPDLDAALKRYF-PEGIDIYF 233 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHH-cCCEEEEEcCCH---HHHHHHHHhcC-CCEEEECCCcccHHHHHHHHC-CCCcEEEE
Confidence 3799999999999999877665 588877655432 1111111 111 11111121 3444332211 12589999
Q ss_pred EccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650 112 DFTDASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTt 138 (220)
|++........+......|.=+++|..
T Consensus 234 d~vG~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 234 DNVGGDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred ECCCHHHHHHHHHHhccCCEEEEECcc
Confidence 988755444444444455655567754
No 475
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=90.72 E-value=3.8 Score=34.19 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=26.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (220)
.+.|.|++|.+|+.+++.+.+. +.+++...+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~-G~~vv~~~~ 35 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKD-GFKVVAGCG 35 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHc-CCEEEEEcC
Confidence 5799999999999999999875 788877554
No 476
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.67 E-value=1.2 Score=39.97 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=50.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--c--CCHHHHHhccccCCCccEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--M--SDLTMVLGSISQSKARAVVI 111 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~--~dl~~~l~~~~~~~~~DVVI 111 (220)
-+|+|.|+ |.+|...+..+.. -+.+++++..+....+... ++ ..+|+.. + .+..+ ... ...+|+||
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak~-~G~~vi~~~~~~~~~~~~~-~~---~~~Ga~~v~~~~~~~~~-~~~---~~~~d~vi 243 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLRL-RGFEVYVLNRRDPPDPKAD-IV---EELGATYVNSSKTPVAE-VKL---VGEFDLII 243 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHH-HH---HHcCCEEecCCccchhh-hhh---cCCCCEEE
Confidence 37999997 9999999877665 4778776542110011111 11 0222221 1 12222 111 13689999
Q ss_pred EccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650 112 DFTDASTV-YDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 112 DfT~p~~~-~~~~~~al~~G~~vVigTt 138 (220)
|++..... .+.+......|.-+++|.+
T Consensus 244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 244 EATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 99864434 4444545556666667875
No 477
>PRK09186 flagellin modification protein A; Provisional
Probab=90.58 E-value=1.7 Score=36.43 Aligned_cols=31 Identities=35% Similarity=0.324 Sum_probs=26.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.+|.|.|++|++|+.+++.+.+ .+.+++...
T Consensus 5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILE-AGGIVIAAD 35 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEe
Confidence 5799999999999999999976 478887763
No 478
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.58 E-value=2.2 Score=38.47 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=56.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (220)
|||.|+|+ |.||..+.-.+.+.. ..+..+..++. .|-.+....+ ...-.....+..+.+ ..+|+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~--~~~~~~~~~~~~~~~------~~~Dl 70 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG--NFTTPVVAATDAEAL------GPADL 70 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCC--ccccccccccChhhc------CCCCE
Confidence 69999997 999999999888775 34443333221 1222111111 000011111212222 37999
Q ss_pred EEEccCchhH---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650 110 VIDFTDASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (220)
Q Consensus 110 VIDfT~p~~~---~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~ 154 (220)
||.++-.-.. .+.+...+.....|++==.|+.-++ +|++...+
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~ 116 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPK 116 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCc
Confidence 8877754433 4444444444555554445776544 67776655
No 479
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=90.57 E-value=2.2 Score=37.86 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=64.4
Q ss_pred ccceeeeecccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC
Q 027650 4 LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME 83 (220)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~ 83 (220)
-||-.--|..-||+..-.+.--|-+..-++..-||.|.|+.|..|..++.++...-+-+-|-..|..+ ....+...+
T Consensus 13 ag~~~~~R~~~Isp~~v~~~A~FH~~s~~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---Pp~~V~~~G 89 (366)
T KOG2774|consen 13 AGCWLPVRRNGISPLPVDPLARFHTISQTQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---PPANVTDVG 89 (366)
T ss_pred CcccccccccCCCcccCCcccccccccccCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---CchhhcccC
Confidence 36666667777776665555545554456667899999999999999999998876666665555211 111111111
Q ss_pred CC---CCccccCCHHHHHhccccCCCccEEEEcc
Q 027650 84 QP---LEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 84 ~~---~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
+ .++--+.++++.... ...|-+|.|+
T Consensus 90 -PyIy~DILD~K~L~eIVVn----~RIdWL~HfS 118 (366)
T KOG2774|consen 90 -PYIYLDILDQKSLEEIVVN----KRIDWLVHFS 118 (366)
T ss_pred -CchhhhhhccccHHHhhcc----cccceeeeHH
Confidence 1 122224566776553 5788888775
No 480
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.56 E-value=0.46 Score=42.80 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=51.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC-CCCccccCCHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~-~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (220)
-+++|+|+ |..++.+++++...-.++=+-++++.. ..+.++... .. ...+...+|.++++. ++|+|+=+
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av~------~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAVR------GADIIVTA 199 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHHT------TSSEEEE-
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhcc------cCCEEEEc
Confidence 38999996 999999999998765688888998742 122222211 11 233445789999986 79999955
Q ss_pred cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (220)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-igT 137 (220)
|+.....+.+ ...++.|.++. ||.
T Consensus 200 T~s~~~~P~~~~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 200 TPSTTPAPVFDAEWLKPGTHINAIGS 225 (313)
T ss_dssp ---SSEEESB-GGGS-TT-EEEE-S-
T ss_pred cCCCCCCccccHHHcCCCcEEEEecC
Confidence 5432200111 23567888876 454
No 481
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.49 E-value=1.5 Score=39.76 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHh
Q 027650 37 KVIINGAVKEIGRAAVIAVTK 57 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~ 57 (220)
||+|+|++|++|..++..+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~ 21 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR 21 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh
Confidence 799999989999999988775
No 482
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=90.44 E-value=1.1 Score=38.95 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=52.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDf 113 (220)
-+|.|+|++|.+|+.++..+.. -+.+++.+.+....-..+.+ .|.. .+.-+. ++.+.+.++..+..+|+++|+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 215 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAA-RGINVINLVRRDAGVAELRA-LGIG---PVVSTEQPGWQDKVREAAGGAPISVALDS 215 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHh-cCCC---EEEcCCCchHHHHHHHHhCCCCCcEEEEC
Confidence 4799999999999999886665 58888887765321111111 1110 011111 222212111112369999998
Q ss_pred cCchhHHHHHHHHHHCCCcEEEeCC
Q 027650 114 TDASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTt 138 (220)
+......+.+..+...|.=+.+|.+
T Consensus 216 ~g~~~~~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 216 VGGKLAGELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred CCChhHHHHHHhhcCCcEEEEEecC
Confidence 7655444444444445555556654
No 483
>PLN02306 hydroxypyruvate reductase
Probab=90.38 E-value=2.6 Score=39.25 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=42.6
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcC-----C-CCCCccccCCHHHHHhccccCC
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDM-----E-QPLEIPVMSDLTMVLGSISQSK 105 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g---~l~g~-----~-~~~gv~v~~dl~~~l~~~~~~~ 105 (220)
..+|+|+|. |++|+.+++.+...=++++.+ +|+... .+.. ...+. + ...++..+.++++++.
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------ 235 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------ 235 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------
Confidence 458999996 999999999875333888875 565311 1100 00100 0 0011222468999997
Q ss_pred CccEEEEcc
Q 027650 106 ARAVVIDFT 114 (220)
Q Consensus 106 ~~DVVIDfT 114 (220)
.+|+|+...
T Consensus 236 ~sDiV~lh~ 244 (386)
T PLN02306 236 EADVISLHP 244 (386)
T ss_pred hCCEEEEeC
Confidence 799888543
No 484
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.31 E-value=2.3 Score=36.01 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=50.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc-CCHH-HHHhccccCCCccEEEEc
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLT-MVLGSISQSKARAVVIDF 113 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~-~~l~~~~~~~~~DVVIDf 113 (220)
.||.|+|+ |++|..-++.+... +..++ +++++. ...+.++.. ...+... .+++ ..+. ++|.||-.
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~~-ga~Vt-Vvsp~~-~~~l~~l~~---~~~i~~~~~~~~~~dl~------~~~lVi~a 76 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLKA-GAQLR-VIAEEL-ESELTLLAE---QGGITWLARCFDADILE------GAFLVIAA 76 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHHC-CCEEE-EEcCCC-CHHHHHHHH---cCCEEEEeCCCCHHHhC------CcEEEEEC
Confidence 48999997 99999999888764 66655 556543 233333332 1123221 1211 2232 78888855
Q ss_pred cCch-hHHHHHHHHHHCCCcE
Q 027650 114 TDAS-TVYDNVKQATAFGMRS 133 (220)
Q Consensus 114 T~p~-~~~~~~~~al~~G~~v 133 (220)
|.-. ........|.+.|+++
T Consensus 77 t~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEE
Confidence 5433 3356667777888877
No 485
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=90.31 E-value=3.4 Score=38.31 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..+.+|.|+|++|..|+.+++.+.+.....-+-++|.
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~ 38 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDK 38 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEecc
Confidence 3467899999999999999999998775666667885
No 486
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.30 E-value=1.8 Score=37.75 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=51.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT 114 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT 114 (220)
+|.|+|++|.+|..+++.+.. -+.++++...++. ....+...+ ...+..+ .+..+.+.... ...+|+++|+.
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~-~G~~vi~~~~s~~---~~~~l~~~G-a~~vi~~~~~~~~~~v~~~~-~~gvd~vld~~ 219 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKI-KGCKVIGCAGSDD---KVAWLKELG-FDAVFNYKTVSLEEALKEAA-PDGIDCYFDNV 219 (329)
T ss_pred EEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHH---HHHHHHHcC-CCEEEeCCCccHHHHHHHHC-CCCcEEEEECC
Confidence 799999999999999887765 5888877664321 111111111 0011111 13322221110 13589999987
Q ss_pred CchhHHHHHHHHHHCCCcEEEeCC
Q 027650 115 DASTVYDNVKQATAFGMRSVVYVP 138 (220)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTt 138 (220)
........+......|.-+.+|..
T Consensus 220 g~~~~~~~~~~l~~~G~iv~~g~~ 243 (329)
T cd08294 220 GGEFSSTVLSHMNDFGRVAVCGSI 243 (329)
T ss_pred CHHHHHHHHHhhccCCEEEEEcch
Confidence 664444444444455655556653
No 487
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.24 E-value=2.4 Score=37.14 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 10 k~vlItGas~gIG~~ia~~l~~-~G~~V~~~ 39 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHA-RGAKLALV 39 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence 4799999999999999999876 57776654
No 488
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=90.23 E-value=4.3 Score=39.79 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (220)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (220)
-++.||+|+|+ |..|+.++.++.+. +++++.+ |++.. .....++. ..=+.-+.|.+.+.+-. .++|++.
T Consensus 20 ~~~k~IgIIGg-Gqlg~mla~aA~~l-G~~Vi~l-d~~~~-apa~~~AD---~~~v~~~~D~~~l~~~a---~~~dvIt- 88 (577)
T PLN02948 20 VSETVVGVLGG-GQLGRMLCQAASQM-GIKVKVL-DPLED-CPASSVAA---RHVVGSFDDRAAVREFA---KRCDVLT- 88 (577)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEE-eCCCC-CchhhhCc---eeeeCCCCCHHHHHHHH---HHCCEEE-
Confidence 34479999996 99999999988764 8888875 54321 11111211 11111146666553210 2578764
Q ss_pred ccCchhHHHHHHHHHHCCCcEEEe-----------------------CCCC-CHHHHHHHHHHhhhcCceEEEcCC----
Q 027650 113 FTDASTVYDNVKQATAFGMRSVVY-----------------------VPHI-QLETVSALSAFCDKASMGCLIAPT---- 164 (220)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVig-----------------------TtG~-~~e~~~~L~~aA~~~~v~vviapN---- 164 (220)
|.....-.+.+..+.+.|+++... |+-+ .-...+.+.++.++-|-|+++=|.
T Consensus 89 ~e~e~v~~~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs 168 (577)
T PLN02948 89 VEIEHVDVDTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAY 168 (577)
T ss_pred EecCCCCHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCC
Confidence 332221122234444555443110 1111 111123456667777889998886
Q ss_pred CcHHHHH
Q 027650 165 LSIGSIL 171 (220)
Q Consensus 165 fS~Gv~l 171 (220)
.|.|+.+
T Consensus 169 ~g~Gv~~ 175 (577)
T PLN02948 169 DGRGNAV 175 (577)
T ss_pred CCCCeEE
Confidence 3777754
No 489
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.21 E-value=1.9 Score=38.55 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=49.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccc---c--CCHHHHHhccccCCCccEE
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SDLTMVLGSISQSKARAVV 110 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v---~--~dl~~~l~~~~~~~~~DVV 110 (220)
+|+|+|+ |.+|...+..+.. -+.+ +++ ++... ... +++. .+|+.. + .++++.... ...+|++
T Consensus 172 ~VlV~G~-G~vG~~aiqlak~-~G~~~Vi~-~~~~~--~~~-~~a~---~lGa~~vi~~~~~~~~~~~~~---~g~~D~v 239 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVKT-LGAAEIVC-ADVSP--RSL-SLAR---EMGADKLVNPQNDDLDHYKAE---KGYFDVS 239 (343)
T ss_pred EEEEECC-CHHHHHHHHHHHH-cCCcEEEE-EeCCH--HHH-HHHH---HcCCcEEecCCcccHHHHhcc---CCCCCEE
Confidence 7999997 9999999887665 4774 544 44321 111 1110 122211 1 234444331 1248999
Q ss_pred EEccCchhHHHHHHHHH-HCCCcEEEeCC
Q 027650 111 IDFTDASTVYDNVKQAT-AFGMRSVVYVP 138 (220)
Q Consensus 111 IDfT~p~~~~~~~~~al-~~G~~vVigTt 138 (220)
||++......+.+..++ ..|+=+.+|.+
T Consensus 240 id~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 240 FEVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 99987544444444444 55555557754
No 490
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=90.21 E-value=0.26 Score=43.53 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=53.1
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhc---CCcE------EEEEEecCC---CCc-ch----hh---hhcCCCCCCccccCCHH
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKA---RGME------VAGAIDSHS---VGE-DI----GM---VCDMEQPLEIPVMSDLT 95 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~---~~~e------Lvg~vd~~~---~g~-d~----g~---l~g~~~~~gv~v~~dl~ 95 (220)
.||.++|+ |-.|-.+++.+... +++. =+..+|++- .++ +. .. +.. .-....++.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~-----~~~~~~~L~ 99 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFAN-----PERESGDLE 99 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcC-----cccccCCHH
Confidence 69999998 99999999988653 2211 335667420 011 11 11 111 112246888
Q ss_pred HHHhccccCCCccEEEEccC-chhH-HHHHHHHHHC-CCcEEEe
Q 027650 96 MVLGSISQSKARAVVIDFTD-ASTV-YDNVKQATAF-GMRSVVY 136 (220)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~-p~~~-~~~~~~al~~-G~~vVig 136 (220)
+++.. -++||+|=.|. |... .+.++...++ ..|+|.-
T Consensus 100 eav~~----~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 100 DAVEA----AKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred HHHHh----hCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 88874 37999998776 6555 4555554433 3566643
No 491
>PRK08628 short chain dehydrogenase; Provisional
Probab=90.17 E-value=1.4 Score=37.12 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=25.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.++.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~-G~~v~~~~ 38 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEE-GAIPVIFG 38 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc-CCcEEEEc
Confidence 47999999999999999999864 67776543
No 492
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.06 E-value=2.5 Score=35.10 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.5
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
++|.|.|++|.+|+.+++.+.++ +.+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~-g~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAAD-GADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCeEEEEc
Confidence 68999999999999999998864 77877654
No 493
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.00 E-value=1.9 Score=36.42 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=25.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (220)
.+|.|+|++|.+|+.+++.+.+. +.+++.+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-GATVVVG 37 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-CCEEEEE
Confidence 58999999999999999999864 7887665
No 494
>PRK06196 oxidoreductase; Provisional
Probab=89.98 E-value=1.6 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.6
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~-~G~~Vv~~~ 57 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQ-AGAHVIVPA 57 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEe
Confidence 5799999999999999999876 478887654
No 495
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.95 E-value=1.8 Score=36.93 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.7
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~-~G~~Vi~~~ 41 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAE-AGADVLIAA 41 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 5799999999999999999887 478987654
No 496
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.94 E-value=0.64 Score=38.47 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=27.8
Q ss_pred CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
+.+|.|.|++|.+|+.+++.+.+ .+.+++.++.+
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRS 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCC
Confidence 45899999999999999999876 47787665554
No 497
>PLN02740 Alcohol dehydrogenase-like
Probab=89.93 E-value=1.6 Score=39.72 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=51.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcc--c-cC----CHHHHHhccccCCCcc
Q 027650 37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-MS----DLTMVLGSISQSKARA 108 (220)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v-~~----dl~~~l~~~~~~~~~D 108 (220)
+|+|+|+ |.+|...+..+... +. +++++ ++.. .....+. .+|+. + +. ++.+.+.++.. ..+|
T Consensus 201 ~VlV~G~-G~vG~~a~q~ak~~-G~~~Vi~~-~~~~--~r~~~a~----~~Ga~~~i~~~~~~~~~~~~v~~~~~-~g~d 270 (381)
T PLN02740 201 SVAIFGL-GAVGLAVAEGARAR-GASKIIGV-DINP--EKFEKGK----EMGITDFINPKDSDKPVHERIREMTG-GGVD 270 (381)
T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCcEEEE-cCCh--HHHHHHH----HcCCcEEEecccccchHHHHHHHHhC-CCCC
Confidence 7999997 99999998877654 66 46554 4321 1111111 12221 1 11 13232221111 1599
Q ss_pred EEEEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650 109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH 139 (220)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~--G~~vVigTtG 139 (220)
++||++-..........+++. |.-+++|.++
T Consensus 271 vvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~ 303 (381)
T PLN02740 271 YSFECAGNVEVLREAFLSTHDGWGLTVLLGIHP 303 (381)
T ss_pred EEEECCCChHHHHHHHHhhhcCCCEEEEEccCC
Confidence 999998754455555455544 7777788764
No 498
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.89 E-value=1.2 Score=44.87 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
..-||+|+|+ |-||..|+..+... +++++ ++|.
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~-G~~V~-l~d~ 366 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDK-GLKTV-LKDA 366 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhC-CCcEE-EecC
Confidence 4458999998 99999999887764 88887 4664
No 499
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.89 E-value=1.7 Score=34.03 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=24.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (220)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (220)
|+|+|+ |.||..++-.+.+ .+.++.-+..+
T Consensus 1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECc-CHHHHHHHHHHHH-CCCceEEEEcc
Confidence 789997 9999999998877 78887665543
No 500
>PRK12742 oxidoreductase; Provisional
Probab=89.88 E-value=2.2 Score=35.31 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=25.9
Q ss_pred ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (220)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (220)
.+|.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus 7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~~ 37 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFTY 37 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEec
Confidence 5799999999999999999876 477876543
Done!