BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027651
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 130/211 (61%), Gaps = 3/211 (1%)
Query: 9 HELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGI 68
H+L R VK+V C C+ Q Q C +C GEY+C IC +D D K Q+HC+ CGI
Sbjct: 50 HQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGI 107
Query: 69 CRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHT 128
CRIG +E++FHC +C C +T+LR H CIEN +CPIC E + S V+ CGH
Sbjct: 108 CRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHL 167
Query: 129 MHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCN 188
+H CY EM+K + Y CP+C S +DM+R W+++D E+ T MP +Y++ V ILCNDCN
Sbjct: 168 LHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCN 226
Query: 189 DTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP 219
+ V FHI+G KC C SYNT +P
Sbjct: 227 GRSTVQFHILGMKCKLCDSYNTAQAGGRRVP 257
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 9 HELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGI 68
H+L R VK+V C C+ Q Q C C GEY+CDIC +D D K Q+HC++CGI
Sbjct: 50 HQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGI 107
Query: 69 CRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHT 128
CRIG +E++FHC +C C + +L+ H CIEN +CPIC E + S V+ CGH
Sbjct: 108 CRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHL 167
Query: 129 MHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCN 188
+H CY EM+K + Y CP+C S +DM+R W+++D+E+ T MP +Y++ V ILCNDCN
Sbjct: 168 LHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCN 226
Query: 189 DTTEVYFHIIGQKCSHCKSYNTRSIA 214
+ V FHI+G KC C+SYNT
Sbjct: 227 GRSTVQFHILGMKCKICESYNTAQAG 252
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Query: 9 HELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGI 68
H L R V+ ++C +C QP AQ C C MG Y+C+ CK +DDD K +HCDDCGI
Sbjct: 172 HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGI 231
Query: 69 CRIGG--RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCG 126
CRIG ++YFHCK CG C S+ N H CIE S +CPIC EY+F+S + C
Sbjct: 232 CRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCS 291
Query: 127 HTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCND 186
H +H C+ E I R Y CP C K++I+++ ++ +D EIE MP Y I CND
Sbjct: 292 HPLHQRCHEEYI-RTNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCND 350
Query: 187 CNDTTEVYFHIIGQKCSHCKSYNT--RSIAPPV 217
CN + +H +G KC+ C SYNT SI P+
Sbjct: 351 CNSRCDTKYHFLGHKCNSCHSYNTCISSIYKPL 383
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 7 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 65
D +E + + + C C P VC NCG N+ Y C C+ + D EK F C+
Sbjct: 3643 DFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD-EKDPFLCNA 3699
Query: 66 CGICRIGGRENYFHCKRC 83
CG C+ + + K C
Sbjct: 3700 CGFCKYARFDFMLYAKPC 3717
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 7 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 65
D +E + + + C C P VC NCG N+ Y C C+ + D EK F C+
Sbjct: 3657 DFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD-EKDPFLCNA 3713
Query: 66 CGICRIGGRENYFHCKRC 83
CG C+ + + K C
Sbjct: 3714 CGFCKYARFDFMLYAKPC 3731
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3
PE=2 SV=2
Length = 4903
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 40/182 (21%)
Query: 21 CSVCDTEQPVAQ--VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICR----IGGR 74
C+VCD+ + CT CG + DI +++ + C +C +C+ G
Sbjct: 343 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV---TPLKRAGWQCPECKVCQNCKQSGED 399
Query: 75 ENYFHCKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYL 113
C C Y T +N +CIE HH+C IC +
Sbjct: 400 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSTQWHHNCLIC-DTC 458
Query: 114 FDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPE 173
+ N CG +CYH +++D C +C + V K D+E+++ + E
Sbjct: 459 YQQQDNLCPF-CG-----KCYHPELQKDMLHCNMCKRWV--HLECDKPTDQELDSQ-LKE 509
Query: 174 DY 175
DY
Sbjct: 510 DY 511
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 7 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 65
D +E + + + C C P VC NCG N+ Y C C+ + D EK F C+
Sbjct: 3646 DFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD-EKDPFLCNA 3702
Query: 66 CGICRIGGRENYFHCKRC 83
CG C+ + + K C
Sbjct: 3703 CGFCKYARFDFMLYAKPC 3720
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3
PE=1 SV=3
Length = 4911
Score = 39.7 bits (91), Expect = 0.017, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 37/159 (23%)
Query: 21 CSVCDTEQPVAQ--VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICR----IGGR 74
C+VCD+ + CT CG + DI +++ + C +C +C+ G
Sbjct: 344 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV---TPLKRAGWQCPECKVCQNCKQSGED 400
Query: 75 ENYFHCKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYL 113
C C Y T +N +CIE + HH+C IC +
Sbjct: 401 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSSQWHHNCLIC-DNC 459
Query: 114 FDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 152
+ N CG +CYH +++D C +C + V
Sbjct: 460 YQQQDNLCPF-CG-----KCYHPELQKDMLHCNMCKRWV 492
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 80 CKRCGSCYSTSLRNNHLCIENSMHH-HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI 138
K G + R L S+ CP+C E L + + M CGH++ C+ +
Sbjct: 9 AKSTGPGQRSKSRPGALSAPLSLEEARCPVCSEILLEPV----TMPCGHSVCLHCFQRTV 64
Query: 139 KRDKYCCPICSKSVIDMSRTWKRIDEEIEATV 170
K CCP+C V +R R + A +
Sbjct: 65 KLISLCCPLCRLRVSSWARKQSREKSLVNAEL 96
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRI 162
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R+
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWARL 64
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 38.5 bits (88), Expect = 0.033, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS 151
C IC+E +F S +N V+KCGH H C+ + +K + CP C S
Sbjct: 1931 CEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLK-GQSTCPTCGSS 1973
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEE 165
CP+C E + + + C HT C+ E + + CCP+C K V TW R++
Sbjct: 26 CPVCLEIFLEPV----TLPCMHTFCKPCFLETVDKSNMCCPLCRKRV----STWARLNSR 77
Query: 166 IEATVMPEDYRH 177
+ V E +R
Sbjct: 78 NKTLVNMELWRR 89
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKR 161
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWAR 63
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPIC 148
C IC+E +F S +N V+KCGH H C+ + +K + CP C
Sbjct: 1957 CEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLK-GQSACPAC 1996
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 7 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 65
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3832 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3888
Query: 66 CGICRIGGRENYFHCKRC 83
CG C+ + + + C
Sbjct: 3889 CGFCKYAKFDFSMYARVC 3906
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 7 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 65
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3779 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3835
Query: 66 CGICRIGGRENYFHCKRC 83
CG C+ + + + C
Sbjct: 3836 CGFCKYAKFDFSMYARVC 3853
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 106 CPICYEYLFDS-LRNTTVMKCGHTMHCECYHEMIKRDKYC-CPICSKSV 152
CPICY+ + ++ + T M CGH C + + + +C CP+C K V
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWL--ENHCTCPLCRKEV 153
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 18/65 (27%)
Query: 106 CPICYEYLFDS---LRNTTVMK--------------CGHTMHCECYHEMIKRDKYCCPIC 148
C IC E +F NT M+ CGH +H C ++R + CPIC
Sbjct: 292 CTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQ-TCPIC 350
Query: 149 SKSVI 153
+SVI
Sbjct: 351 RRSVI 355
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRID 163
C IC E LF+ + + C HT+ C+ +++ CCP C + V +R R +
Sbjct: 15 QCQICVEILFEPV----TLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTN 69
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 157
CP+C E + + C HT HC+C + K CP+C S + +SR
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLN---KWKNSRCPVCRHSSLRLSR 288
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 35.0 bits (79), Expect = 0.40, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 152
CPIC FD + + KCGH+ +C H+ ++ D CP C+ V
Sbjct: 136 CPIC----FDMIEEAYMTKCGHSFCYKCIHQSLE-DNNRCPKCNYVV 177
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 160
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 160
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 34.7 bits (78), Expect = 0.54, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 152
CPIC FD + + KCGH+ +C H+ ++ D CP C+ V
Sbjct: 138 CPIC----FDMIEEAYMTKCGHSFCYKCIHQSLE-DNNRCPKCNYVV 179
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 34.3 bits (77), Expect = 0.60, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM--SRTWKR-- 161
C +C ++ + CGHT +C + + C P+C ++ SR + +
Sbjct: 461 CSLCMRLFYEPV----TTPCGHTFCLKCLERCLDHNAKC-PLCKDVLLQCLPSRKYSKNV 515
Query: 162 IDEEIEATVMPEDYRHKK 179
I EE+ AT +PE+++ +K
Sbjct: 516 ILEELIATFLPEEFKERK 533
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 34.3 bits (77), Expect = 0.61, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 106 CPICYEYLFDSL-RNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS------VIDMSRT 158
C IC+E+ ++ + ++CGH +C + +K CP C+K V+ +RT
Sbjct: 287 CTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQARKCPQCNKKAKHSDIVVLYART 346
Query: 159 WKRID----EEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKS 207
+ +D E ++++++ E K+ + C + ++ +CS S
Sbjct: 347 LRALDTSEHERMKSSLLKEQMLRKQAELESAQC----RLQLQVLTDECSKLHS 395
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 33.9 bits (76), Expect = 0.84, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 106 CPICYEYLFDSLRN--TTVMKCGHTMHCECYHEMI--------KRDKYCCPIC 148
CP+C E L S +N ++ +C H MH +C + MI K CP+C
Sbjct: 548 CPMCMEELVHSAQNPAISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPVC 600
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 157
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILLEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 100 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRT 158
S + C +C FDS +T + CGH C C + ++ + CCPIC + + D+ +
Sbjct: 488 GSRNGECTVC----FDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543
Query: 159 WK 160
++
Sbjct: 544 YR 545
>sp|Q9BYM8|HOIL1_HUMAN RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo
sapiens GN=RBCK1 PE=1 SV=2
Length = 510
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 98 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---YCCPICSKSVID 154
+ N+ CP+CY L + +C HT EC I+ + CP +
Sbjct: 274 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 329
Query: 155 MSRTWKRIDEEIEATVMPEDYRH 177
S + K ++ EI+A + PEDY+
Sbjct: 330 YSCSGKLLEREIKALLTPEDYQR 352
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
C IC E D + ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDGDK-LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 106 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
C IC E D + ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDGDK-LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 157
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 97 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 156
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K + +
Sbjct: 398 VLENELQ--CIICSEYFVEAV----TLNCAHSFCSYCINEWMKR-KVECPICRKDIKSKT 450
Query: 157 RT 158
R+
Sbjct: 451 RS 452
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 115 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 115 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 115 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 157
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTR 63
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 115 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 80 CKRCGSCYST-----SLRNNHLCIENSMHH--HCPICYEYLFDSLRNTTVMKCGHTMHCE 132
C+R G Y + + + L M H C +C E F++ + CGH H
Sbjct: 588 CERKGRSYGSYNTNEDMEPDWLTWPADMLHCTECVVCLEN-FENGCLLMGLPCGHVFHQN 646
Query: 133 CYHEMIKRDKYCCPIC 148
C + ++CCP+C
Sbjct: 647 CIVMWLAGGRHCCPVC 662
>sp|Q9WUB0|HOIL1_MOUSE RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus
musculus GN=Rbck1 PE=1 SV=2
Length = 508
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 98 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 157
+ N+ CP+CY L + +C HT EC I+ + C S
Sbjct: 272 VLNTEPTECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDSTYSC 330
Query: 158 TWKRIDEEIEATVMPEDYRH 177
K ++ EI A + PEDY+
Sbjct: 331 PGKLLEREIRALLSPEDYQR 350
>sp|P18750|ZO61_XENLA Oocyte zinc finger protein XlCOF6.1 (Fragment) OS=Xenopus laevis
PE=3 SV=1
Length = 224
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 11 LVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGIC- 69
R+ V + + E+P + C+ CG + CD+ + Y + F C +CG C
Sbjct: 99 FARRSVLEAHQKIHTGERPFS--CSECGKGFIKQ-CDLARHYRTHTGEKPFPCPECGKCF 155
Query: 70 ----------RIGGRENYFHCKRCGSCYSTSLRNNHL 96
R E F C CG C++ +N+HL
Sbjct: 156 TQSMQLIRHRRTHTGEKPFACSECGKCFA---QNSHL 189
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 114 FDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 160
FD +T + CGH C C + ++ + CCPIC + + D+ + ++
Sbjct: 507 FDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 97 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 152
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 397 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 445
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 97 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 152
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 396 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 444
>sp|Q62921|HOIL1_RAT RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Rattus norvegicus GN=Rbck1 PE=1 SV=3
Length = 508
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 98 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---YCCPICSKSVID 154
+ N+ CP+CY L + +C HT EC I+ + CP +
Sbjct: 272 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 327
Query: 155 MSRTWKRIDEEIEATVMPEDYRH 177
S K ++ EI A + PEDY+
Sbjct: 328 YSCPGKLLEREIRALLSPEDYQR 350
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 24/113 (21%)
Query: 122 VMKCGHTMHCECYHEMIKR-DKYCCPICSKSVIDM-----SRTWKRIDEEIEATVMPEDY 175
++ C HT HC+C + + CP+C +SV S T+ DE+ P
Sbjct: 324 ILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATEDSFDSTTYSFRDED------PSLP 377
Query: 176 RHK-KVWILCNDCNDTTEVYFHIIGQKCSHC--------KSYNTRSIAPPVLP 219
H+ +W + ++G+ HC Y T S APP P
Sbjct: 378 GHRPPIWAIQVQLRSR---RLELLGRASPHCHCSTTSLEAEYTTVSSAPPEAP 427
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153
C IC L + + KC H+ H EC +M + CPIC +V+
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECI-DMWFQSHSTCPICRNTVL 173
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSK 150
CPIC E + ++ CGHT+ +C +++ + CP CSK
Sbjct: 20 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 67
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSK 150
CPIC E + ++ CGHT+ +C +++ + CP CSK
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.491
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,650,316
Number of Sequences: 539616
Number of extensions: 3549697
Number of successful extensions: 15510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 15227
Number of HSP's gapped (non-prelim): 575
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)