Query 027651
Match_columns 220
No_of_seqs 205 out of 658
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 22:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 1.9E-40 6.3E-45 270.1 5.9 99 4-104 44-142 (143)
2 2k2d_A Ring finger and CHY zin 100.0 1.2E-32 3.9E-37 204.3 3.3 75 145-219 1-75 (79)
3 2ecm_A Ring finger and CHY zin 99.4 3.9E-14 1.3E-18 94.7 3.4 52 101-153 3-54 (55)
4 1iym_A EL5; ring-H2 finger, ub 99.4 2.8E-13 9.7E-18 90.6 4.3 49 103-153 5-54 (55)
5 2ecl_A Ring-box protein 2; RNF 99.4 4E-13 1.4E-17 97.9 5.2 49 103-153 26-75 (81)
6 2ep4_A Ring finger protein 24; 99.3 3.1E-13 1.1E-17 95.7 3.1 56 99-156 11-66 (74)
7 2kiz_A E3 ubiquitin-protein li 99.3 4.9E-13 1.7E-17 93.4 3.9 53 100-154 11-63 (69)
8 1x4j_A Ring finger protein 38; 99.3 2.9E-13 9.8E-18 96.4 2.0 53 101-155 21-73 (75)
9 1v87_A Deltex protein 2; ring- 99.3 1.2E-12 4E-17 99.9 4.4 56 100-155 22-95 (114)
10 2ect_A Ring finger protein 126 99.3 1.5E-12 5.1E-17 93.0 3.8 52 101-154 13-64 (78)
11 2l0b_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 97.2 3.0 51 101-153 38-88 (91)
12 2ea6_A Ring finger protein 4; 99.2 2.8E-12 9.4E-17 88.8 3.0 52 101-153 13-67 (69)
13 3ng2_A RNF4, snurf, ring finge 99.2 2.3E-12 7.9E-17 90.0 2.6 53 101-154 8-63 (71)
14 1g25_A CDK-activating kinase a 99.2 6.8E-12 2.3E-16 86.9 4.5 52 103-154 3-55 (65)
15 2xeu_A Ring finger protein 4; 99.2 3.6E-12 1.2E-16 86.9 2.8 51 103-154 3-56 (64)
16 1e4u_A Transcriptional repress 99.2 2.7E-12 9.2E-17 93.8 0.8 60 102-163 10-71 (78)
17 1chc_A Equine herpes virus-1 r 99.2 7.9E-12 2.7E-16 86.8 3.2 50 102-155 4-53 (68)
18 2ct2_A Tripartite motif protei 99.2 1.4E-11 4.9E-16 89.1 3.8 53 102-154 14-68 (88)
19 3dpl_R Ring-box protein 1; ubi 99.1 3E-11 1E-15 93.1 4.6 50 103-153 48-100 (106)
20 2ecn_A Ring finger protein 141 99.1 4.7E-12 1.6E-16 88.6 -0.1 53 101-159 13-65 (70)
21 2d8t_A Dactylidin, ring finger 99.1 2.7E-11 9.2E-16 85.4 3.2 49 101-154 13-61 (71)
22 2csy_A Zinc finger protein 183 99.1 5.4E-11 1.8E-15 85.7 3.1 47 102-153 14-60 (81)
23 4ayc_A E3 ubiquitin-protein li 99.1 9.8E-11 3.4E-15 92.7 4.8 69 104-178 54-124 (138)
24 1t1h_A Gspef-atpub14, armadill 99.1 1.8E-10 6.1E-15 82.1 5.6 48 102-153 7-54 (78)
25 2djb_A Polycomb group ring fin 99.1 5.6E-11 1.9E-15 83.9 2.9 48 103-154 15-62 (72)
26 2ysl_A Tripartite motif-contai 99.1 9.8E-11 3.4E-15 82.2 4.1 49 101-153 18-68 (73)
27 4ap4_A E3 ubiquitin ligase RNF 99.0 6.8E-11 2.3E-15 90.8 3.2 53 101-154 5-60 (133)
28 2ecy_A TNF receptor-associated 99.0 9.4E-11 3.2E-15 81.3 3.6 48 103-154 15-62 (66)
29 2d8s_A Cellular modulator of i 99.0 1.5E-10 5.1E-15 85.0 2.9 51 101-153 13-69 (80)
30 2yur_A Retinoblastoma-binding 99.0 1.4E-10 4.9E-15 82.5 2.5 50 103-156 15-66 (74)
31 3lrq_A E3 ubiquitin-protein li 99.0 1.7E-10 5.8E-15 86.8 2.2 48 103-153 22-69 (100)
32 2ysj_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 77.6 3.4 43 102-148 19-63 (63)
33 2ecj_A Tripartite motif-contai 98.9 4.8E-10 1.6E-14 75.1 3.9 43 102-148 14-58 (58)
34 4a0k_B E3 ubiquitin-protein li 98.9 1.2E-10 4E-15 91.6 0.5 50 103-153 48-111 (117)
35 2egp_A Tripartite motif-contai 98.9 1.8E-10 6E-15 81.9 1.3 48 103-154 12-65 (79)
36 3fl2_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 87.0 3.4 48 103-154 52-99 (124)
37 2ecw_A Tripartite motif-contai 98.9 7.8E-10 2.7E-14 78.9 4.1 48 102-153 18-70 (85)
38 2y43_A E3 ubiquitin-protein li 98.9 4.4E-10 1.5E-14 83.7 2.9 48 103-154 22-69 (99)
39 1rmd_A RAG1; V(D)J recombinati 98.9 4.1E-10 1.4E-14 86.1 2.7 62 103-168 23-86 (116)
40 3ztg_A E3 ubiquitin-protein li 98.9 2.8E-10 9.5E-15 83.5 1.5 48 102-153 12-61 (92)
41 2ecv_A Tripartite motif-contai 98.9 7.7E-10 2.6E-14 78.9 3.3 49 102-154 18-71 (85)
42 4ap4_A E3 ubiquitin ligase RNF 98.9 7.4E-10 2.5E-14 84.9 3.4 53 101-154 70-125 (133)
43 2ckl_A Polycomb group ring fin 98.9 7.5E-10 2.6E-14 83.8 3.3 48 103-154 15-62 (108)
44 3l11_A E3 ubiquitin-protein li 98.9 4.7E-10 1.6E-14 85.7 1.7 48 103-154 15-62 (115)
45 2ckl_B Ubiquitin ligase protei 98.9 8.5E-10 2.9E-14 89.4 3.3 48 104-154 55-102 (165)
46 3hct_A TNF receptor-associated 98.8 7.8E-10 2.7E-14 85.2 2.3 48 103-154 18-65 (118)
47 1z6u_A NP95-like ring finger p 98.8 1.5E-09 5.3E-14 87.7 3.2 48 103-154 78-125 (150)
48 1jm7_A BRCA1, breast cancer ty 98.8 2.4E-09 8.1E-14 80.7 3.4 47 103-153 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.6 7.8E-09 2.7E-13 72.1 1.6 52 99-155 4-58 (64)
50 1bor_A Transcription factor PM 98.6 7.1E-09 2.4E-13 70.3 0.9 45 101-153 4-48 (56)
51 2vje_B MDM4 protein; proto-onc 98.6 1.2E-08 4.2E-13 70.9 1.1 50 101-155 5-57 (63)
52 4ic3_A E3 ubiquitin-protein li 98.5 1.4E-08 4.8E-13 72.5 1.2 44 103-155 24-68 (74)
53 1jm7_B BARD1, BRCA1-associated 98.5 1.8E-08 6.2E-13 77.4 1.6 44 103-153 22-66 (117)
54 3hcs_A TNF receptor-associated 98.5 2.5E-08 8.6E-13 80.9 1.9 63 103-169 18-81 (170)
55 3knv_A TNF receptor-associated 98.5 1.5E-08 5E-13 81.2 -0.0 46 103-152 31-76 (141)
56 2y1n_A E3 ubiquitin-protein li 98.5 7.9E-08 2.7E-12 89.1 4.0 49 102-154 331-379 (389)
57 2ct0_A Non-SMC element 1 homol 98.4 1E-07 3.5E-12 69.3 3.5 48 103-153 15-63 (74)
58 2kr4_A Ubiquitin conjugation f 98.4 1E-07 3.6E-12 69.9 3.0 47 102-153 13-59 (85)
59 2c2l_A CHIP, carboxy terminus 98.4 2.1E-07 7.3E-12 79.2 4.6 51 99-153 204-254 (281)
60 2ecg_A Baculoviral IAP repeat- 98.4 9.9E-08 3.4E-12 68.0 2.0 44 103-155 25-69 (75)
61 2kre_A Ubiquitin conjugation f 98.4 1.5E-07 5.2E-12 71.3 3.1 46 103-153 29-74 (100)
62 1wgm_A Ubiquitin conjugation f 98.3 2.8E-07 9.6E-12 69.6 3.7 47 103-154 22-69 (98)
63 2ea5_A Cell growth regulator w 98.3 2.1E-07 7.2E-12 65.8 2.8 48 101-157 13-61 (68)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.8E-07 9.5E-12 64.0 3.1 51 99-153 2-58 (60)
65 1wim_A KIAA0161 protein; ring 98.3 3.6E-07 1.2E-11 67.5 3.0 49 102-151 4-61 (94)
66 2yu4_A E3 SUMO-protein ligase 98.2 5.4E-07 1.8E-11 67.0 2.6 46 102-151 6-59 (94)
67 2yho_A E3 ubiquitin-protein li 98.1 4E-07 1.4E-11 66.0 0.8 46 103-157 18-64 (79)
68 3k1l_B Fancl; UBC, ring, RWD, 98.1 6.3E-07 2.2E-11 82.3 0.8 53 101-153 306-372 (381)
69 2f42_A STIP1 homology and U-bo 98.1 3.7E-06 1.3E-10 70.3 5.0 47 103-153 106-152 (179)
70 3htk_C E3 SUMO-protein ligase 97.8 5.8E-06 2E-10 73.2 2.3 50 101-153 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.8 6.3E-06 2.1E-10 75.1 1.6 44 103-155 295-339 (345)
72 2bay_A PRE-mRNA splicing facto 97.4 4.5E-05 1.5E-09 52.8 1.7 48 102-153 2-49 (61)
73 3vk6_A E3 ubiquitin-protein li 97.4 7E-05 2.4E-09 57.4 2.9 50 105-157 3-52 (101)
74 3nw0_A Non-structural maintena 95.8 0.006 2.1E-07 52.6 3.7 48 103-153 180-228 (238)
75 3a43_A HYPD, hydrogenase nicke 91.7 0.058 2E-06 42.8 1.5 38 178-215 67-123 (139)
76 2ko5_A Ring finger protein Z; 89.9 0.14 4.9E-06 38.7 2.1 44 103-153 28-72 (99)
77 2lbm_A Transcriptional regulat 89.4 0.3 1E-05 39.2 3.8 50 98-152 58-118 (142)
78 2jun_A Midline-1; B-BOX, TRIM, 88.7 0.19 6.6E-06 36.5 2.1 34 103-138 3-38 (101)
79 2ysm_A Myeloid/lymphoid or mix 87.7 0.12 4.2E-06 38.8 0.4 82 65-151 9-104 (111)
80 2kdx_A HYPA, hydrogenase/ureas 87.4 0.2 7E-06 38.3 1.5 38 177-216 69-107 (119)
81 3v43_A Histone acetyltransfera 85.4 0.24 8.1E-06 37.6 0.9 75 72-150 21-111 (112)
82 2ysm_A Myeloid/lymphoid or mix 83.0 1.3 4.5E-05 33.0 4.2 71 15-89 4-81 (111)
83 2kwj_A Zinc finger protein DPF 82.5 0.069 2.4E-06 40.8 -3.2 74 74-152 20-109 (114)
84 2jrp_A Putative cytoplasmic pr 81.7 0.19 6.7E-06 36.8 -0.9 68 102-198 1-71 (81)
85 1weo_A Cellulose synthase, cat 80.6 2.3 7.7E-05 31.8 4.5 57 98-154 11-70 (93)
86 4bbq_A Lysine-specific demethy 72.3 0.64 2.2E-05 34.9 -0.4 46 104-150 60-113 (117)
87 2lri_C Autoimmune regulator; Z 71.0 3.2 0.00011 28.7 3.0 45 102-151 11-59 (66)
88 3lqh_A Histone-lysine N-methyl 66.8 2 7E-05 35.5 1.5 52 103-154 2-66 (183)
89 1f62_A Transcription factor WS 66.5 3.4 0.00012 26.5 2.2 45 105-151 2-50 (51)
90 2jne_A Hypothetical protein YF 64.7 3.5 0.00012 31.2 2.3 9 59-67 60-68 (101)
91 3ql9_A Transcriptional regulat 63.1 5.7 0.00019 31.2 3.3 67 82-153 36-113 (129)
92 2jrp_A Putative cytoplasmic pr 62.4 3.9 0.00013 29.8 2.1 43 9-52 10-60 (81)
93 1zfo_A LAsp-1; LIM domain, zin 62.1 2.1 7.2E-05 25.2 0.5 30 102-134 2-31 (31)
94 1we9_A PHD finger family prote 61.9 1 3.5E-05 30.4 -1.0 50 102-152 5-59 (64)
95 2egq_A FHL1 protein; LIM domai 57.6 4.2 0.00014 27.6 1.5 42 102-154 14-58 (77)
96 2yt5_A Metal-response element- 56.6 1.5 5E-05 29.7 -1.0 50 101-151 4-61 (66)
97 1g47_A Pinch protein; LIM doma 56.4 5.8 0.0002 26.8 2.1 43 101-154 9-51 (77)
98 2l5u_A Chromodomain-helicase-D 56.1 5.6 0.00019 26.7 1.9 47 100-151 8-58 (61)
99 1x61_A Thyroid receptor intera 55.3 6.4 0.00022 26.3 2.1 40 103-153 5-44 (72)
100 1x63_A Skeletal muscle LIM-pro 55.2 4.9 0.00017 27.6 1.5 42 102-154 14-55 (82)
101 4ayb_P DNA-directed RNA polyme 54.7 7.2 0.00025 25.8 2.2 28 41-68 1-31 (48)
102 2k16_A Transcription initiatio 52.8 2.3 7.7E-05 29.6 -0.6 48 104-153 19-70 (75)
103 2k4x_A 30S ribosomal protein S 52.8 10 0.00035 25.3 2.8 28 58-85 16-44 (55)
104 2kdx_A HYPA, hydrogenase/ureas 52.4 5.5 0.00019 30.1 1.6 30 27-69 69-99 (119)
105 3uk3_C Zinc finger protein 217 51.0 16 0.00056 22.1 3.4 15 142-156 4-18 (57)
106 2dkt_A Ring finger and CHY zin 51.0 3.2 0.00011 33.3 -0.0 52 20-72 73-127 (143)
107 2e6s_A E3 ubiquitin-protein li 50.8 6.6 0.00022 27.9 1.6 65 74-150 7-76 (77)
108 1x6a_A LIMK-2, LIM domain kina 48.5 7.9 0.00027 26.5 1.7 39 103-154 15-53 (81)
109 1wyh_A SLIM 2, skeletal muscle 48.0 6.2 0.00021 26.2 1.1 41 103-154 5-45 (72)
110 3mjh_B Early endosome antigen 47.9 9 0.00031 23.4 1.7 13 143-155 6-18 (34)
111 1mm2_A MI2-beta; PHD, zinc fin 47.1 6.1 0.00021 26.5 0.9 49 101-153 7-58 (61)
112 2fiy_A Protein FDHE homolog; F 46.7 7.4 0.00025 34.6 1.7 50 142-208 182-231 (309)
113 1wil_A KIAA1045 protein; ring 46.2 21 0.00073 26.3 3.8 32 101-137 13-47 (89)
114 2jvx_A NF-kappa-B essential mo 46.1 6.1 0.00021 23.2 0.7 16 142-157 3-18 (28)
115 1x4l_A Skeletal muscle LIM-pro 46.1 11 0.00038 25.0 2.2 41 103-154 5-47 (72)
116 1bbo_A Human enhancer-binding 45.5 13 0.00045 22.5 2.3 13 143-155 2-14 (57)
117 2ehe_A Four and A half LIM dom 45.0 10 0.00035 25.9 1.9 42 102-154 14-55 (82)
118 1x4k_A Skeletal muscle LIM-pro 44.9 10 0.00035 25.1 1.8 41 103-154 5-45 (72)
119 1vq8_1 50S ribosomal protein L 43.8 9.8 0.00034 26.0 1.5 28 176-206 12-39 (57)
120 2ayj_A 50S ribosomal protein L 43.7 22 0.00074 24.2 3.2 27 13-39 14-41 (56)
121 3v43_A Histone acetyltransfera 43.6 22 0.00075 26.4 3.7 26 124-149 31-62 (112)
122 1iml_A CRIP, cysteine rich int 43.0 6.1 0.00021 26.8 0.4 39 105-155 2-40 (76)
123 3iz5_l 60S ribosomal protein L 42.4 11 0.00036 28.2 1.7 31 176-209 11-48 (94)
124 1x68_A FHL5 protein; four-and- 42.3 13 0.00043 25.2 2.0 68 103-205 5-74 (76)
125 1wev_A Riken cDNA 1110020M19; 42.0 1.8 6.2E-05 31.4 -2.6 54 102-156 15-77 (88)
126 3u5n_A E3 ubiquitin-protein li 41.6 8.8 0.0003 31.5 1.3 47 101-152 5-55 (207)
127 4a18_A RPL37, ribosomal protei 40.9 11 0.00036 28.3 1.4 31 176-209 11-48 (94)
128 3j20_Y 30S ribosomal protein S 40.5 11 0.00037 24.7 1.3 14 26-39 14-27 (50)
129 1wep_A PHF8; structural genomi 39.4 21 0.00073 24.9 2.8 48 104-153 13-65 (79)
130 2cup_A Skeletal muscle LIM-pro 39.1 12 0.0004 26.6 1.4 40 103-153 5-44 (101)
131 3i2d_A E3 SUMO-protein ligase 38.4 18 0.0006 33.2 2.8 48 103-153 249-299 (371)
132 2l43_A N-teminal domain from h 38.1 8.9 0.0003 27.7 0.7 50 102-153 24-77 (88)
133 2cor_A Pinch protein; LIM doma 38.0 15 0.00051 25.2 1.8 41 101-154 13-53 (79)
134 1wfl_A Zinc finger protein 216 37.9 23 0.00078 25.3 2.8 44 6-54 13-57 (74)
135 2ku3_A Bromodomain-containing 37.7 9.2 0.00031 26.7 0.7 51 99-149 12-64 (71)
136 1znf_A 31ST zinc finger from X 37.2 22 0.00077 17.6 2.1 14 143-156 2-15 (27)
137 2kgg_A Histone demethylase jar 37.2 5.5 0.00019 25.9 -0.6 44 105-149 4-52 (52)
138 4fo9_A E3 SUMO-protein ligase 37.2 19 0.00066 32.8 2.9 46 105-153 217-265 (360)
139 1twf_L ABC10-alpha, DNA-direct 37.1 18 0.00062 25.3 2.1 6 62-67 47-52 (70)
140 1klr_A Zinc finger Y-chromosom 36.7 25 0.00084 17.7 2.3 16 142-157 2-17 (30)
141 2dar_A PDZ and LIM domain prot 36.4 15 0.00052 25.6 1.7 42 100-154 22-63 (90)
142 1x3h_A Leupaxin; paxillin fami 36.0 17 0.0006 24.5 1.9 39 103-154 15-53 (80)
143 2kmk_A Zinc finger protein GFI 35.8 26 0.00087 22.6 2.7 17 141-157 28-44 (82)
144 2m0e_A Zinc finger and BTB dom 35.5 27 0.00094 17.3 2.3 16 142-157 2-17 (29)
145 2adr_A ADR1; transcription reg 34.9 21 0.0007 21.9 2.0 13 143-155 3-15 (60)
146 1ard_A Yeast transcription fac 34.8 27 0.00092 17.5 2.2 15 142-156 2-16 (29)
147 2gmg_A Hypothetical protein PF 34.6 16 0.00054 27.8 1.6 33 179-212 65-97 (105)
148 2d8x_A Protein pinch; LIM doma 34.4 18 0.00061 23.9 1.7 40 103-155 5-44 (70)
149 2dj7_A Actin-binding LIM prote 34.0 21 0.00073 24.5 2.1 41 102-154 14-54 (80)
150 1v6g_A Actin binding LIM prote 33.9 20 0.00068 24.4 1.9 39 103-154 15-53 (81)
151 2v3b_B Rubredoxin 2, rubredoxi 33.8 21 0.00072 23.8 1.9 12 41-52 1-12 (55)
152 3f6q_B LIM and senescent cell 33.1 15 0.0005 24.1 1.1 44 101-155 9-52 (72)
153 2lce_A B-cell lymphoma 6 prote 32.8 35 0.0012 21.9 3.0 14 142-155 17-30 (74)
154 1vd4_A Transcription initiatio 32.7 21 0.0007 22.7 1.7 9 77-85 39-47 (62)
155 1e8j_A Rubredoxin; iron-sulfur 32.7 26 0.0009 23.0 2.3 12 41-52 1-12 (52)
156 2co8_A NEDD9 interacting prote 32.7 17 0.00058 25.1 1.4 42 101-154 13-54 (82)
157 2cur_A Skeletal muscle LIM-pro 32.2 25 0.00087 23.0 2.2 38 103-153 5-42 (69)
158 1p7a_A BF3, BKLF, kruppel-like 32.0 30 0.001 18.7 2.2 16 141-156 10-25 (37)
159 2yql_A PHD finger protein 21A; 31.7 4.3 0.00015 26.7 -1.8 44 101-149 7-54 (56)
160 2l3k_A Rhombotin-2, linker, LI 31.7 18 0.00061 26.9 1.5 38 105-153 10-47 (123)
161 3v2d_5 50S ribosomal protein L 31.4 17 0.00058 24.8 1.2 30 180-214 29-58 (60)
162 1paa_A Yeast transcription fac 31.4 28 0.00096 17.7 1.9 16 142-157 2-17 (30)
163 3shb_A E3 ubiquitin-protein li 31.1 87 0.003 21.9 5.0 41 45-89 12-53 (77)
164 1x4s_A Protein FON, zinc finge 30.6 18 0.00062 24.7 1.2 11 40-50 23-33 (59)
165 3h0g_L DNA-directed RNA polyme 30.4 29 0.00098 24.0 2.2 12 57-68 35-46 (63)
166 2elr_A Zinc finger protein 406 30.1 34 0.0012 18.3 2.2 17 141-157 8-24 (36)
167 2cu8_A Cysteine-rich protein 2 30.1 19 0.00065 24.2 1.3 40 103-154 9-48 (76)
168 2kvf_A Zinc finger and BTB dom 29.7 21 0.00071 18.0 1.1 15 142-156 3-17 (28)
169 3asl_A E3 ubiquitin-protein li 29.6 93 0.0032 21.2 4.8 35 54-89 10-45 (70)
170 2cuq_A Four and A half LIM dom 29.2 30 0.001 23.3 2.2 39 102-153 14-52 (80)
171 2zjr_Z 50S ribosomal protein L 29.0 25 0.00085 23.9 1.7 30 180-214 29-58 (60)
172 1weu_A Inhibitor of growth fam 29.0 28 0.00095 25.5 2.1 45 103-153 36-87 (91)
173 1rim_A E6APC2 peptide; E6-bind 28.5 39 0.0013 18.2 2.3 16 142-157 2-17 (33)
174 2vpb_A Hpygo1, pygopus homolog 28.0 24 0.00081 24.1 1.5 31 103-134 8-40 (65)
175 2zkr_2 60S ribosomal protein L 27.9 23 0.0008 26.5 1.5 31 177-210 12-49 (97)
176 1llm_C Chimera of ZIF23-GCN4; 27.6 37 0.0013 22.6 2.4 14 142-155 31-44 (88)
177 2kvh_A Zinc finger and BTB dom 27.6 24 0.00082 17.7 1.2 15 142-156 3-17 (27)
178 1wen_A Inhibitor of growth fam 27.5 34 0.0012 23.7 2.2 46 102-153 15-67 (71)
179 1nyp_A Pinch protein; LIM doma 26.8 15 0.00052 23.9 0.3 39 103-154 5-43 (66)
180 1x6e_A Zinc finger protein 24; 26.4 24 0.00082 22.7 1.2 13 142-154 14-26 (72)
181 2lvu_A Zinc finger and BTB dom 32.3 14 0.00048 18.5 0.0 14 142-155 2-15 (26)
182 2dlo_A Thyroid receptor-intera 26.3 31 0.0011 23.3 1.9 39 103-154 15-53 (81)
183 1rik_A E6APC1 peptide; E6-bind 26.2 26 0.00088 17.6 1.1 15 142-156 2-16 (29)
184 2m0f_A Zinc finger and BTB dom 26.1 31 0.0011 17.2 1.5 15 142-156 2-16 (29)
185 1vfy_A Phosphatidylinositol-3- 25.9 29 0.001 23.8 1.6 23 32-67 12-34 (73)
186 1v5n_A PDI-like hypothetical p 25.8 37 0.0013 24.4 2.2 12 74-85 58-69 (89)
187 2d9h_A Zinc finger protein 692 25.8 63 0.0022 20.8 3.3 13 142-154 7-19 (78)
188 1ef4_A Subunit N, DNA-directed 25.7 41 0.0014 22.7 2.3 24 143-169 4-27 (55)
189 1wig_A KIAA1808 protein; LIM d 25.7 35 0.0012 22.9 2.0 38 103-153 5-42 (73)
190 2kvg_A Zinc finger and BTB dom 25.7 21 0.00073 18.1 0.7 15 142-156 3-17 (27)
191 2dmi_A Teashirt homolog 3; zin 25.6 60 0.0021 22.5 3.4 17 141-157 79-95 (115)
192 2g45_A Ubiquitin carboxyl-term 25.4 27 0.00092 27.1 1.5 24 183-209 36-61 (129)
193 3o70_A PHD finger protein 13; 25.2 8.2 0.00028 26.6 -1.4 48 101-151 17-67 (68)
194 2yqq_A Zinc finger HIT domain- 25.2 27 0.00093 23.5 1.3 18 33-51 14-31 (56)
195 2iyb_E Testin, TESS, TES; LIM 25.2 21 0.00073 23.3 0.8 40 104-154 3-44 (65)
196 2emz_A ZFP-95, zinc finger pro 24.8 82 0.0028 18.0 3.4 17 141-157 11-27 (46)
197 1x5w_A Zinc finger protein 64, 24.6 30 0.001 22.0 1.4 17 142-158 37-53 (70)
198 1bi6_H Bromelain inhibitor VI; 24.6 25 0.00085 21.8 0.9 23 25-47 9-31 (41)
199 2pv0_B DNA (cytosine-5)-methyl 24.3 53 0.0018 30.1 3.5 73 77-153 67-150 (386)
200 2ytb_A Zinc finger protein 32; 24.2 36 0.0012 19.0 1.6 16 141-156 10-25 (42)
201 3o36_A Transcription intermedi 23.9 23 0.0008 28.3 0.9 45 103-152 4-52 (184)
202 2m0d_A Zinc finger and BTB dom 23.8 31 0.0011 17.2 1.2 15 142-156 3-17 (30)
203 3jyw_9 60S ribosomal protein L 23.4 52 0.0018 23.3 2.5 33 41-73 24-57 (72)
204 3a7q_B Low-density lipoprotein 23.3 63 0.0022 20.0 2.7 31 76-107 11-43 (44)
205 2ct1_A Transcriptional repress 23.2 42 0.0014 21.7 2.0 12 143-154 16-27 (77)
206 3gox_A Restriction endonucleas 23.2 48 0.0016 27.9 2.7 73 70-153 68-148 (200)
207 3j21_g 50S ribosomal protein L 23.2 32 0.0011 22.8 1.3 24 16-39 12-36 (51)
208 2puy_A PHD finger protein 21A; 23.1 84 0.0029 20.4 3.5 23 64-88 6-28 (60)
209 2lvt_A Zinc finger and BTB dom 28.7 18 0.0006 18.5 0.0 13 143-155 3-15 (29)
210 2cs3_A Protein C14ORF4, MY039 23.0 99 0.0034 22.7 4.0 66 101-168 13-85 (93)
211 2yte_A Zinc finger protein 473 23.0 53 0.0018 18.2 2.2 16 141-156 9-24 (42)
212 3j21_e 50S ribosomal protein L 22.8 17 0.00058 25.2 -0.1 24 180-206 16-39 (62)
213 6rxn_A Rubredoxin; electron tr 22.7 29 0.00098 22.4 1.0 28 41-68 2-38 (46)
214 1a1h_A QGSR zinc finger peptid 22.6 53 0.0018 21.5 2.4 14 142-155 34-47 (90)
215 2eos_A B-cell lymphoma 6 prote 22.3 48 0.0016 18.6 1.9 16 141-156 10-25 (42)
216 1ajj_A LR5, low-density lipopr 21.9 51 0.0018 19.6 2.0 31 76-107 5-37 (37)
217 2en7_A Zinc finger protein 268 21.8 61 0.0021 18.2 2.3 16 141-156 11-26 (44)
218 1wfp_A Zinc finger (AN1-like) 21.8 57 0.0019 23.3 2.5 45 5-54 12-57 (74)
219 2ytm_A Zinc finger protein 28 21.7 70 0.0024 18.3 2.7 17 141-157 11-27 (46)
220 1x62_A C-terminal LIM domain p 21.4 47 0.0016 22.4 2.0 39 102-153 14-52 (79)
221 2eoq_A Zinc finger protein 224 21.3 60 0.0021 18.5 2.3 17 141-157 11-27 (46)
222 1ptq_A Protein kinase C delta 21.0 48 0.0016 20.5 1.8 10 75-84 26-35 (50)
223 2epx_A Zinc finger protein 28 21.0 60 0.002 18.5 2.2 17 141-157 11-27 (47)
224 4gzn_C ZFP-57, zinc finger pro 21.0 32 0.0011 22.4 1.0 15 75-89 30-44 (60)
225 3u5c_f 40S ribosomal protein S 20.9 33 0.0011 27.0 1.3 27 25-51 112-146 (152)
226 3ihp_A Ubiquitin carboxyl-term 20.7 34 0.0012 34.1 1.5 68 122-209 173-242 (854)
227 4rxn_A Rubredoxin; electron tr 20.7 49 0.0017 22.0 1.9 12 41-52 1-12 (54)
228 2yti_A Zinc finger protein 347 20.6 64 0.0022 18.4 2.3 16 141-156 11-26 (46)
229 2eq2_A Zinc finger protein 347 20.6 62 0.0021 18.4 2.2 16 141-156 11-26 (46)
230 2lvr_A Zinc finger and BTB dom 25.9 21 0.00073 18.1 0.0 14 142-155 3-16 (30)
231 2ytr_A Zinc finger protein 347 20.5 65 0.0022 18.3 2.3 16 141-156 11-26 (46)
232 2enf_A Zinc finger protein 347 20.5 61 0.0021 18.5 2.2 16 141-156 11-26 (46)
233 3cw1_L U1 small nuclear ribonu 20.3 27 0.00092 25.1 0.5 13 41-53 1-13 (77)
234 1m3v_A FLIN4, fusion of the LI 20.3 83 0.0028 23.1 3.3 28 126-154 54-81 (122)
235 2eon_A ZFP-95, zinc finger pro 20.2 56 0.0019 18.8 2.0 16 141-156 11-26 (46)
236 2elt_A Zinc finger protein 406 20.2 40 0.0014 18.0 1.2 16 141-156 8-23 (36)
237 2emk_A Zinc finger protein 28 20.1 63 0.0022 18.5 2.2 17 141-157 11-27 (46)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=1.9e-40 Score=270.09 Aligned_cols=99 Identities=43% Similarity=1.042 Sum_probs=95.2
Q ss_pred CcCCCccccccccceEEeCCCCCCCcccccccccCcccceecCCccccccCCCCCCcccCCCCCccccCCccceeecCCc
Q 027651 4 NPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC 83 (220)
Q Consensus 4 d~~~~H~l~R~~v~~i~C~~C~~~q~~~~~C~~Cg~~~a~yfC~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C 83 (220)
||.++|+|+|++|++|+|+.|.++|++++.|.+||+.||+|||+|||||| ++|+|||||+|||||||+++|||||++|
T Consensus 44 de~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C 121 (143)
T 2dkt_A 44 DTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKC 121 (143)
T ss_dssp HHTSSSCCCSSSCCCEEESSSCCEECSCSBCSSSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTT
T ss_pred ccccccccchhccceeeecccCccccccCcCCCCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcC
Confidence 56789999999999999999999999999999999999999999999997 4699999999999999999999999999
Q ss_pred CccccccccCcceeecCCCCC
Q 027651 84 GSCYSTSLRNNHLCIENSMHH 104 (220)
Q Consensus 84 ~~C~s~~l~~~H~CiE~s~~~ 104 (220)
|+|||++|+++|+|+|+++++
T Consensus 122 ~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 122 NLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp TEEEEGGGSSSSCCSCCCSCC
T ss_pred CeeeccccCcCcccCccCccC
Confidence 999999999999999999864
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.97 E-value=1.2e-32 Score=204.35 Aligned_cols=75 Identities=41% Similarity=0.810 Sum_probs=40.5
Q ss_pred CCCCCcCccchhHHHHHHHHHHHhcCCChhhhcCeeEEEccCCCCcceeeeeEeeecCCCCCCccccccCCCCCC
Q 027651 145 CPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP 219 (220)
Q Consensus 145 CPiCrksi~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~~~~~~~~ 219 (220)
||+|+||+.||+.+|++||++|+++|||++|++++|+|+||||+++|.++||||||||++|+||||++++++..|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~ 75 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRIS 75 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999975544
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.44 E-value=3.9e-14 Score=94.65 Aligned_cols=52 Identities=42% Similarity=0.875 Sum_probs=45.4
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+.+..||||++.+.++...++.++|||.||..|+.+|+.. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4567899999998776677888999999999999999984 589999998874
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=2.8e-13 Score=90.56 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=41.2
Q ss_pred CCCCccchhhccccCCceEEcc-CCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..||||++++.+ .+.+..++ |||.||..|+.+|+. .+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 5689999999544 45677776 999999999999998 4789999998864
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=97.94 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=39.5
Q ss_pred CCCCccchhhccccCCceEEc-cCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..||||++++... +.+++| +|||.||..|+++|+. .+.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCC
T ss_pred hccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcc
Confidence 56799999885544 445555 6999999999999998 4679999999875
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=95.70 Aligned_cols=56 Identities=23% Similarity=0.694 Sum_probs=46.4
Q ss_pred cCCCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchh
Q 027651 99 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 156 (220)
Q Consensus 99 E~s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~ 156 (220)
+...+..||||++.+ .....+..|+|||.||..|+.+|+.. +.+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBC-CSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCccc-CCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 445577899999994 44566778899999999999999984 579999999998643
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=4.9e-13 Score=93.44 Aligned_cols=53 Identities=23% Similarity=0.573 Sum_probs=44.3
Q ss_pred CCCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 100 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 100 ~s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
......||||++.+ .....++.|+|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSIL-EEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCC-CSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccc-cCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 34567899999985 44567888999999999999999984 6789999998863
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-13 Score=96.41 Aligned_cols=53 Identities=26% Similarity=0.592 Sum_probs=44.4
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
.....||||++.+ .....++.|||||.||..|+.+|+. .+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 4466899999985 4456678899999999999999998 468999999988753
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1.2e-12 Score=99.89 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=43.3
Q ss_pred CCCCCCCccchhhccccC--------------CceEEccCCCccChHHHHHHhc----CCCCCCCCCCcCccch
Q 027651 100 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVIDM 155 (220)
Q Consensus 100 ~s~~~~CPICle~lf~s~--------------~~v~~LpCGH~~H~~C~~~~l~----~~~~~CPiCrksi~dm 155 (220)
...+.+||||+++|.... ..++.++|||.||..|+.+|+. ..+.+||+||+.+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 344568999999974422 2344789999999999999994 2468999999998753
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=1.5e-12 Score=93.01 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=43.9
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
.....||||++.+ .....+..|+|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDY-ALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCC-CTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccc-cCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 3457899999984 4455678899999999999999998 46899999999874
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=97.20 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=43.0
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
..+..||||++.+. ....++.|||||.||..|+++|+. .+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYV-KGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECC-TTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhc-CCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 34567999999854 445678899999999999999998 5789999999875
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=88.78 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=42.5
Q ss_pred CCCCCCccchhhcccc---CCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
.....||||++.+.+. ...++.++|||.||..|+.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3456899999986543 233578899999999999999984 789999999875
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=2.3e-12 Score=89.98 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.5
Q ss_pred CCCCCCccchhhcccc---CCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
..+..||||++.+.+. ...++.++|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-cCCCCCCCCCccCh
Confidence 4467899999986553 24457889999999999999998 46899999999873
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=6.8e-12 Score=86.91 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=42.3
Q ss_pred CCCCccchh-hccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle-~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++ .+.+....+++++|||+|+..|+++|+..+..+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 6555434446789999999999999987667899999999863
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=3.6e-12 Score=86.95 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=42.4
Q ss_pred CCCCccchhhcccc---CCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+.+. ...+..++|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56799999986542 244578899999999999999984 7899999999874
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=2.7e-12 Score=93.82 Aligned_cols=60 Identities=23% Similarity=0.542 Sum_probs=47.0
Q ss_pred CCCCCccchhhccccCCceEEc--cCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHHHHHH
Q 027651 102 MHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRID 163 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD 163 (220)
.+..||||+|++.. .++.++ +|||.|+..|+..++....++||+||+++..+...|+.+|
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCC
Confidence 45689999998532 334444 4999999999999986567899999999998776666554
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.19 E-value=7.9e-12 Score=86.85 Aligned_cols=50 Identities=26% Similarity=0.637 Sum_probs=42.3
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
.+..||||++.+. ++++.++|||.||..|+.+|+. .+.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 4568999999853 3568899999999999999998 468999999998753
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=89.13 Aligned_cols=53 Identities=28% Similarity=0.665 Sum_probs=43.6
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCC--CCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~--~~~CPiCrksi~d 154 (220)
....||||++.+.++...++.|+|||.||..|+.+|+... ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3567999999966554447888999999999999999843 4899999998763
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.13 E-value=3e-11 Score=93.14 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=37.1
Q ss_pred CCCCccchhhcccc---CCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..|++|++++..+ ...++.++|||.||..|+++||. .+.+||+||+.+.
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 34566666543221 12366789999999999999998 5789999999853
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.7e-12 Score=88.62 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=43.4
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHH
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTW 159 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~ 159 (220)
.....||||++.+.+ +.++|||.||..|+.+|+. .+.+||+||+.+......|
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccc
Confidence 345789999998532 7789999999999999998 6799999999988654433
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=85.35 Aligned_cols=49 Identities=16% Similarity=0.422 Sum_probs=40.9
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
.....||||++.+. ..+.++|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 34567999999852 356789999999999999998 46899999999873
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.4e-11 Score=85.69 Aligned_cols=47 Identities=28% Similarity=0.525 Sum_probs=39.9
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
....||||++.+. ..++++|||+||..|+.+|+. ...+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ----NPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC----SEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc----CeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 3567999999852 245689999999999999998 4789999999986
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.06 E-value=9.8e-11 Score=92.73 Aligned_cols=69 Identities=26% Similarity=0.646 Sum_probs=48.3
Q ss_pred CCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHHHHHHHHHHh--cCCChhhhcC
Q 027651 104 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEA--TVMPEDYRHK 178 (220)
Q Consensus 104 ~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD~~i~~--~pmP~~y~~~ 178 (220)
..||||++.+. .++.+||||+||..|+..|+. .+.+||+||+++......+ .+|..|.. ..++++++..
T Consensus 54 ~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~-~~~~~i~~~~~~l~~~~~~r 124 (138)
T 4ayc_A 54 LQCIICSEYFI----EAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSKTYSL-VLDNCINKMVNNLSSEVKER 124 (138)
T ss_dssp SBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCEEECH-HHHHHHHHHHTTSCHHHHHH
T ss_pred CCCcccCcccC----CceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCCCCcc-chhHHHHHHHHHhhHHHHHH
Confidence 46999999853 356789999999999999998 5789999999997532211 22333321 2466665543
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=1.8e-10 Score=82.09 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=40.7
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
.+..||||++.|. ..+.++|||+|++.|+.+|+..++.+||+|++.+.
T Consensus 7 ~~~~C~IC~~~~~----~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMK----DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCS----SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCcccccc----CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3568999999753 34567999999999999999865789999999986
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5.6e-11 Score=83.93 Aligned_cols=48 Identities=33% Similarity=0.600 Sum_probs=39.9
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+.+ ++..++|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCc
Confidence 5679999998533 444459999999999999998 46899999999874
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.8e-11 Score=82.16 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=40.3
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcC--CCCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiCrksi~ 153 (220)
.....||||++.+. ..+.++|||.||..|+.+|+.. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34568999999853 3566799999999999999962 4679999999886
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6.8e-11 Score=90.76 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.5
Q ss_pred CCCCCCccchhhcccc---CCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+.+..||||++.+.+. ...++.++|||+||..|+.+|+. .+.+||+|++.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3456899999986543 34458889999999999999998 46799999999874
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.4e-11 Score=81.30 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+.+ + +.++|||.||..|+.+|+.....+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---P-KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESS---C-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcC---e-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4579999998532 3 3479999999999999996567899999999864
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-10 Score=85.04 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=40.7
Q ss_pred CCCCCCccchhhccccCCceEEccCC-----CccChHHHHHHhcCC-CCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRD-KYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCG-----H~~H~~C~~~~l~~~-~~~CPiCrksi~ 153 (220)
+.+..|+||++++ +...+ .++||+ |+||..|+++||... ..+||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~-~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEG-DDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCC-CSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccc-cCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4467899999984 43344 468995 999999999999853 369999999886
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=82.46 Aligned_cols=50 Identities=22% Similarity=0.609 Sum_probs=39.9
Q ss_pred CCCCccchhhccccCCceEEcc-CCCccChHHHHHHhcCC-CCCCCCCCcCccchh
Q 027651 103 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRD-KYCCPICSKSVIDMS 156 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~~-~~~CPiCrksi~dm~ 156 (220)
+..||||++.|. ..+.++ |||.||..|+.+|+... ..+||+||+.+....
T Consensus 15 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 15 ELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGSCSSSCCCCT----TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCcCCChHHh----CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 457999999853 245688 99999999999999742 379999999876443
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.96 E-value=1.7e-10 Score=86.81 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..||||++.+. +++..++|||.||..|+.+|+.....+||+||+++.
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 457999999853 344449999999999999999854479999999986
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.4e-10 Score=77.63 Aligned_cols=43 Identities=28% Similarity=0.809 Sum_probs=35.2
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcC--CCCCCCCC
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 148 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiC 148 (220)
.+..||||++.+. ..+.++|||.||..|+.+|+.. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3568999999853 3556799999999999999973 45799998
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.8e-10 Score=75.14 Aligned_cols=43 Identities=28% Similarity=0.900 Sum_probs=34.9
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcC--CCCCCCCC
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 148 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiC 148 (220)
....||||++.+.+ .+.++|||.||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35679999998532 355899999999999999653 56899998
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.93 E-value=1.2e-10 Score=91.61 Aligned_cols=50 Identities=22% Similarity=0.545 Sum_probs=0.5
Q ss_pred CCCCccchhhcccc-------------CC-ceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDS-------------LR-NTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s-------------~~-~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
..+|+||+++|.+. .+ .+..++|||.||..|+++||. .+.+||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 46788888886431 11 234469999999999999998 4789999998753
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=1.8e-10 Score=81.87 Aligned_cols=48 Identities=33% Similarity=0.716 Sum_probs=39.5
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCC------CCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD------KYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~------~~~CPiCrksi~d 154 (220)
+..||||++.+ . ..+.|+|||.|+..|+.+|+... ..+||+||+.+..
T Consensus 12 ~~~C~IC~~~~-~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELL-T---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEEC-S---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCccc-C---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 56799999984 3 24458999999999999999852 6899999999863
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.92 E-value=4.6e-10 Score=86.98 Aligned_cols=48 Identities=21% Similarity=0.618 Sum_probs=40.6
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+. ..+.++|||+||..|+..|+.....+||+||+.+..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 357999999853 356679999999999999998666799999999974
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=7.8e-10 Score=78.89 Aligned_cols=48 Identities=27% Similarity=0.599 Sum_probs=39.7
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCC-----CCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-----~~~CPiCrksi~ 153 (220)
....||||++.+. ..+.++|||.||..|+..|+... ..+||+|++.+.
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCS----SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhC----cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3568999999853 23478999999999999999852 689999999886
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.91 E-value=4.4e-10 Score=83.73 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=39.5
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...||||++.+.+ ++..++|||.||..|+..|+. .+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 4579999998532 444459999999999999998 56899999999873
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=4.1e-10 Score=86.14 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=45.7
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchh--HHHHHHHHHHHh
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS--RTWKRIDEEIEA 168 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~--~~~~~lD~~i~~ 168 (220)
+..||||++.+. .++.++|||.|+..|+.+|+.....+||+||+.+.... ...+.+.+.+..
T Consensus 23 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 23 SISCQICEHILA----DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCcHhc----CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 457999999853 34558999999999999999855689999999987422 223444454443
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.90 E-value=2.8e-10 Score=83.48 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=38.9
Q ss_pred CCCCCccchhhccccCCceEEcc-CCCccChHHHHHHhcC-CCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKR-DKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~-~~~~CPiCrksi~ 153 (220)
.+..||||++.|. ..+.++ |||+|+..|+.+|+.. +..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS----SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc----CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3567999999753 345788 9999999999999863 3479999999974
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.7e-10 Score=78.91 Aligned_cols=49 Identities=31% Similarity=0.704 Sum_probs=40.1
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcC-----CCCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----DKYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-----~~~~CPiCrksi~d 154 (220)
....||||++.+. ..+.++|||.||..|+..|+.. +..+||+|++.+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT----QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS----SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC----CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3568999999853 2456799999999999999874 26899999999873
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=7.4e-10 Score=84.93 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.0
Q ss_pred CCCCCCccchhhcccc---CCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
.....||||++.+.+. ...++.++|||.||..|+++|+. .+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence 4467899999986542 23357789999999999999998 46799999999874
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.88 E-value=7.5e-10 Score=83.81 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=40.1
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+. +++..++|||+||..|+..|+.. +.+||+|++.+..
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 567999999853 34555599999999999999984 6899999999874
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=4.7e-10 Score=85.70 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=40.5
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+. ..+.|+|||+|+..|+..|+..+..+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346999999853 355679999999999999998667899999999863
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.87 E-value=8.5e-10 Score=89.37 Aligned_cols=48 Identities=27% Similarity=0.701 Sum_probs=40.4
Q ss_pred CCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 104 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 104 ~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
..||||++.+. +++..++|||.||..|+..|+..+..+||+||+.+..
T Consensus 55 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 37999999853 2555569999999999999998657899999999863
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.84 E-value=7.8e-10 Score=85.21 Aligned_cols=48 Identities=25% Similarity=0.592 Sum_probs=40.2
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.+. ..+.++|||+|+..|+.+|+.....+||+||+.+..
T Consensus 18 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhc----CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 457999999853 245689999999999999998655699999999875
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=87.67 Aligned_cols=48 Identities=21% Similarity=0.627 Sum_probs=40.5
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...||||++.+. ..+.++|||+|+..|+..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc----CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 457999999753 345589999999999999998666799999999974
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=2.4e-09 Score=80.70 Aligned_cols=47 Identities=26% Similarity=0.699 Sum_probs=38.2
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCC--CCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~--~~~CPiCrksi~ 153 (220)
...||||++.+. ..+.++|||.||..|+..|+... ..+||+|++.+.
T Consensus 21 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIK----EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCS----SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhc----CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 457999999752 23457999999999999999843 268999999886
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.63 E-value=7.8e-09 Score=72.13 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=40.7
Q ss_pred cCCCCCCCccchhhccccCCceEEc--cCCCc-cChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 99 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 99 E~s~~~~CPICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
....+..|+||++.. ..+.++ ||||. |-..|+..|.. .+.+||+||+.+.+.
T Consensus 4 ~~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 4 PLNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMI 58 (64)
T ss_dssp -CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhce
Confidence 344567899999973 234454 99999 78999999997 467999999998753
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=7.1e-09 Score=70.25 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=36.5
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
.....||||++.+ . ..+.|+|||+|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~-~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA-K---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC-B---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCcc-C---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 4456799999984 3 2467899999999999773 579999999876
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.56 E-value=1.2e-08 Score=70.93 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=39.5
Q ss_pred CCCCCCccchhhccccCCceEE--ccCCCc-cChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 101 SMHHHCPICYEYLFDSLRNTTV--MKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~--LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
.....|+||++... ...+ +||||. |...|+..|.. .+.+||+||+.+.+.
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhce
Confidence 34578999999732 2334 499998 99999999987 457999999998754
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.55 E-value=1.4e-08 Score=72.46 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=37.1
Q ss_pred CCCCccchhhccccCCceEEccCCCc-cChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
+..|+||++.+ ..++.+||||. |+..|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSB----CCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCC----CCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 45799999974 24677899999 999999888 6999999998753
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.8e-08 Score=77.36 Aligned_cols=44 Identities=23% Similarity=0.596 Sum_probs=37.1
Q ss_pred CCCCccchhhccccCCceEEc-cCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..||||++.+. .++.+ +|||+|+..|+..|+. .+||+|++.+.
T Consensus 22 ~~~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR----EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS----SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh----CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 568999999752 24455 9999999999999986 78999999985
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.51 E-value=2.5e-08 Score=80.89 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=45.7
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhH-HHHHHHHHHHhc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEIEAT 169 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~ 169 (220)
...||||++.|.+ .+.++|||+|+..|+.+|+..+..+||+||+.+..... .-..+.++|...
T Consensus 18 ~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 18 KYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 4579999998532 35589999999999999998555699999999875221 012445555543
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.49 E-value=1.5e-08 Score=81.19 Aligned_cols=46 Identities=20% Similarity=0.468 Sum_probs=38.5
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 152 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 152 (220)
+..||||++.|.+ .+.++|||.|+..|+.+|+..+..+||+||+.+
T Consensus 31 ~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4579999998532 355899999999999999986667999999975
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.46 E-value=7.9e-08 Score=89.10 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=41.4
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
....||||++.+ ..++.+||||.||..|+.+|+.....+||+||+.+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999984 3467889999999999999997446899999999874
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=1e-07 Score=69.25 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=37.7
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCC-CCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-~~~CPiCrksi~ 153 (220)
..+|+||.+.+.. ..+-..|+|.||..|+..||+.. +.+||+|+....
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4689999998542 23334999999999999999843 279999997765
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.42 E-value=1e-07 Score=69.87 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
.+..||||++.|. ..+.++|||+|-+.|+..|+. ++.+||+|+..+.
T Consensus 13 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMT----DPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCchhc----CCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 3567999999753 366788999999999999998 4789999999886
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=2.1e-07 Score=79.25 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=41.7
Q ss_pred cCCCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 99 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 99 E~s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+......||||++.| . .++++||||+|.+.|+..|+..+..+||+|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~-~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELM-R---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBC-S---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHh-c---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 334567899999975 2 35678999999999999999865566999999986
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=9.9e-08 Score=67.96 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=35.5
Q ss_pred CCCCccchhhccccCCceEEccCCCc-cChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
+..||||++.+ ..++.+||||. |...|+..+ .+||+||+.+...
T Consensus 25 ~~~C~IC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC----CCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC----CCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 34799999974 24567899999 999999643 6899999998753
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.38 E-value=1.5e-07 Score=71.28 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..||||++.|. .++.++|||+|-+.|+..|+. .+.+||+|+.++.
T Consensus 29 ~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTLMT----DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSBCS----SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCccc----CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 568999999752 466778999999999999998 5789999999986
No 62
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.34 E-value=2.8e-07 Score=69.56 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCCCccchhhccccCCceEEccCC-CccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCG-H~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
+..||||++.|. ++++++|| |+|-+.||..|+.. +.+||+|+..+..
T Consensus 22 ~~~CpI~~~~m~----dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 22 EFLDPIMSTLMC----DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred hcCCcCcccccc----CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 567999999752 46678999 99999999999984 7899999999863
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.1e-07 Score=65.75 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=38.8
Q ss_pred CCCCCCccchhhccccCCceEEccCCCc-cChHHHHHHhcCCCCCCCCCCcCccchhH
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 157 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 157 (220)
.....|+||++.. ..++.|||||. |...|+.. ..+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceEE
Confidence 4467899999973 35788999999 99999984 2689999999986433
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.32 E-value=2.8e-07 Score=64.02 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=39.1
Q ss_pred cCCCCCCCccchhhccccCCceEEccCC--C---ccChHHHHHHhcC-CCCCCCCCCcCcc
Q 027651 99 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKR-DKYCCPICSKSVI 153 (220)
Q Consensus 99 E~s~~~~CPICle~lf~s~~~v~~LpCG--H---~~H~~C~~~~l~~-~~~~CPiCrksi~ 153 (220)
|.+....|.||+++. ..+. ++||. + .||..|++.|+.. ++.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455677899999872 2333 57864 4 9999999999974 4689999998764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.27 E-value=3.6e-07 Score=67.49 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=37.1
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcC-------CCCCCCC--CCcC
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-------DKYCCPI--CSKS 151 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-------~~~~CPi--Crks 151 (220)
....||||++++ .....+..++|||.|...|+.+|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccc-ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356799999984 43333333489999999999999863 1368999 9998
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=5.4e-07 Score=67.02 Aligned_cols=46 Identities=33% Similarity=0.609 Sum_probs=36.4
Q ss_pred CCCCCccchhhccccCCceEEc-cCCCccChHHHHHHhcCC-----CCCCCC--CCcC
Q 027651 102 MHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRD-----KYCCPI--CSKS 151 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~~~-----~~~CPi--Crks 151 (220)
.+..||||++.| . .++.+ .|||+|-+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~-~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM-K---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC-S---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh-c---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356799999975 3 34556 599999999999999742 479999 9976
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.14 E-value=4e-07 Score=66.02 Aligned_cols=46 Identities=30% Similarity=0.661 Sum_probs=37.6
Q ss_pred CCCCccchhhccccCCceEEccCCCc-cChHHHHHHhcCCCCCCCCCCcCccchhH
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 157 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 157 (220)
+..|+||++.+ ..++.+||||. |...|+..| .+||+||..+...-.
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEE
Confidence 45799999974 34778899999 999999866 399999999986433
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.07 E-value=6.3e-07 Score=82.35 Aligned_cols=53 Identities=26% Similarity=0.519 Sum_probs=39.7
Q ss_pred CCCCCCccchhhccccCCce----EEccCCCccChHHHHHHhcCC----------CCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNT----TVMKCGHTMHCECYHEMIKRD----------KYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v----~~LpCGH~~H~~C~~~~l~~~----------~~~CPiCrksi~ 153 (220)
....+|+||++.+.++..-. ..++|||.||..|+.+||++. ..+||.|++.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999865523222 235899999999999999741 157999999876
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.05 E-value=3.7e-06 Score=70.31 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=39.0
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+..||||++.|. .++++||||+|-+.|+..|+..+..+||+|+.++.
T Consensus 106 ~f~CPI~~elm~----DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCccccCC----CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 457999999753 35667999999999999999753347999999886
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=5.8e-06 Score=73.20 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=40.9
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcC-CCCCCCC--CCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DKYCCPI--CSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-~~~~CPi--Crksi~ 153 (220)
..+..||||++.| .+||+...|||+|-+.|+.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456799999985 247776799999999999999974 3478999 999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.76 E-value=6.3e-06 Score=75.06 Aligned_cols=44 Identities=25% Similarity=0.664 Sum_probs=37.1
Q ss_pred CCCCccchhhccccCCceEEccCCCc-cChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
+..||||++.+ ..++.|||||. |...|+..| ..||+||..+...
T Consensus 295 ~~~C~IC~~~~----~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKE----VSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSB----CCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcC----CceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 46899999984 24677899999 999999877 6899999998753
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.42 E-value=4.5e-05 Score=52.78 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
+...|||+++.|. ++|...++||+|=+.++.+|+.. +.+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC
T ss_pred CeEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC
Confidence 3567999999863 34444499999999999999984 568999998886
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.41 E-value=7e-05 Score=57.42 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=41.5
Q ss_pred CCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhH
Q 027651 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 157 (220)
Q Consensus 105 ~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 157 (220)
.|++|.-++. ...+.+||.|+|...|+..|.+.+..+||+|+.++.+.+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4888887753 3567889999999999999987677899999999987543
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.79 E-value=0.006 Score=52.62 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=35.8
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCC-CCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-~~~CPiCrksi~ 153 (220)
-..|.||.+-++. ..+-..|+|.||..|+..|+++. +.+||.|+....
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5679999886542 23333599999999999999753 469999997643
No 75
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=91.73 E-value=0.058 Score=42.83 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=30.5
Q ss_pred CeeEEEccCCCCccee-------------eeeEe------eecCCCCCCccccccCC
Q 027651 178 KKVWILCNDCNDTTEV-------------YFHII------GQKCSHCKSYNTRSIAP 215 (220)
Q Consensus 178 ~~v~I~CnDC~~~s~~-------------~~H~l------g~kC~~C~SyNT~~~~~ 215 (220)
..+...|++||..... .+|++ ..+||.|||++...++|
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 3467899999987642 56776 68999999999988765
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.89 E-value=0.14 Score=38.73 Aligned_cols=44 Identities=20% Similarity=0.580 Sum_probs=35.1
Q ss_pred CCCCccchhhccccCCceEEccCC-CccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCG-H~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
..+|-.|.-. +. ..+.|. |++...|+..+|. .+.+||||++++-
T Consensus 28 ~~nCKsCWf~-~k-----~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-NK-----GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-CS-----SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc-cC-----CeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4578888744 22 255785 9999999999998 5789999999986
No 77
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.44 E-value=0.3 Score=39.18 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=36.3
Q ss_pred ecCCCCCCCccchhhccccCCceEEc-cCCCccChHHHHHHh----------cCCCCCCCCCCcCc
Q 027651 98 IENSMHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMI----------KRDKYCCPICSKSV 152 (220)
Q Consensus 98 iE~s~~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l----------~~~~~~CPiCrksi 152 (220)
.+...+..|.||.+. . .+..- .|--+||..|++.-+ ..+...||+|...-
T Consensus 58 d~Dg~~d~C~vC~~G----G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp CTTSCBCSCSSSCCC----S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred cCCCCCCeecccCCC----C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 456678889999975 2 22222 789999999999544 34678999999543
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.72 E-value=0.19 Score=36.54 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=25.6
Q ss_pred CCCCccchhhccccCCceEE-ccCCCccChHHHHH-Hh
Q 027651 103 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHE-MI 138 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~-~l 138 (220)
+..|+||++.++. .++.. +.|||.|-..|+.. |.
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhc
Confidence 4679999986433 23333 89999999999998 53
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.70 E-value=0.12 Score=38.80 Aligned_cols=82 Identities=22% Similarity=0.553 Sum_probs=44.8
Q ss_pred CCCccccCCc-cceeecCCcCcc-----cccccc----CcceeecCCCCCCCccchhhccccCCceEE-ccCCCccChHH
Q 027651 65 DCGICRIGGR-ENYFHCKRCGSC-----YSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCEC 133 (220)
Q Consensus 65 ~CgiCR~G~~-~~~fHC~~C~~C-----~s~~l~----~~H~CiE~s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C 133 (220)
.|.||.-+|. ++...|+.|+.- +...+. ..=.|.+= ..|.||... .+ ...+.. -.|.-.||..|
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~-~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GE-DSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SC-CTTEEECSSSCCEEEGGG
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CC-CCCeeECCCCCcHHhHHh
Confidence 4666666653 566777777644 433321 11111110 146677664 11 112222 27899999999
Q ss_pred HHHHhc---CCCCCCCCCCcC
Q 027651 134 YHEMIK---RDKYCCPICSKS 151 (220)
Q Consensus 134 ~~~~l~---~~~~~CPiCrks 151 (220)
++.-+. .+...||.|...
T Consensus 84 l~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 84 LQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp SSSCCSSCCSSCCCCHHHHCC
T ss_pred cCCccccCCCCCcCCcCCcCc
Confidence 986443 245778877654
No 80
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=87.38 E-value=0.2 Score=38.28 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=29.4
Q ss_pred cCeeEEEccCCCCcceeeeeEeee-cCCCCCCccccccCCC
Q 027651 177 HKKVWILCNDCNDTTEVYFHIIGQ-KCSHCKSYNTRSIAPP 216 (220)
Q Consensus 177 ~~~v~I~CnDC~~~s~~~~H~lg~-kC~~C~SyNT~~~~~~ 216 (220)
...+...|.+||......- ... +||.|+|.++++++|.
T Consensus 69 ~~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp EECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEESS
T ss_pred eccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecCC
Confidence 3456799999998776542 245 8999999999988764
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.44 E-value=0.24 Score=37.56 Aligned_cols=75 Identities=25% Similarity=0.544 Sum_probs=44.0
Q ss_pred CCccceeecCCcCcccccc-c-----------cCcceeecCCCCCCCccchhhccccCCceEE-ccCCCccChHHHHHHh
Q 027651 72 GGRENYFHCKRCGSCYSTS-L-----------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI 138 (220)
Q Consensus 72 G~~~~~fHC~~C~~C~s~~-l-----------~~~H~CiE~s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l 138 (220)
|.+++...|+.|+.-+-.+ | ..+=.|.+= ..|.||.+.=.+ ...+.. -.|...||..|++.-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~-~~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKN-ADNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCT-TCCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCC-ccceEEcCCCCCeeecccCCCCC
Confidence 4467888999987655332 1 112223221 157888764111 112222 2689999999997654
Q ss_pred c---CCCCCCCCCCc
Q 027651 139 K---RDKYCCPICSK 150 (220)
Q Consensus 139 ~---~~~~~CPiCrk 150 (220)
. .+...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 4 24578999975
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.95 E-value=1.3 Score=32.99 Aligned_cols=71 Identities=24% Similarity=0.689 Sum_probs=42.3
Q ss_pred ccceEEeCCCCCCCccc--ccccccCcccceecCCccccccCC-CCCCcccCCCCCccc---cCC-ccceeecCCcCccc
Q 027651 15 DVKQVICSVCDTEQPVA--QVCTNCGVNMGEYFCDICKFYDDD-IEKGQFHCDDCGICR---IGG-RENYFHCKRCGSCY 87 (220)
Q Consensus 15 ~v~~i~C~~C~~~q~~~--~~C~~Cg~~~a~yfC~~C~l~dd~-~~k~~yHC~~CgiCR---~G~-~~~~fHC~~C~~C~ 87 (220)
...+.+|..|+..+... ..|..|+..|=. .|--.... .....+.|+.|.+|. .++ .+....|+.|+.-|
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~y 79 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGY 79 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEE
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHH
Confidence 34566888998776543 568888765422 23222221 234667888765554 443 24689999998655
Q ss_pred cc
Q 027651 88 ST 89 (220)
Q Consensus 88 s~ 89 (220)
-.
T Consensus 80 H~ 81 (111)
T 2ysm_A 80 HT 81 (111)
T ss_dssp EG
T ss_pred hH
Confidence 44
No 83
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.54 E-value=0.069 Score=40.78 Aligned_cols=74 Identities=20% Similarity=0.502 Sum_probs=42.7
Q ss_pred ccceeecCCcCcc-----ccccc-------cCcceeecCCCCCCCccchhhccccCCceEE-ccCCCccChHHHHHHhc-
Q 027651 74 RENYFHCKRCGSC-----YSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK- 139 (220)
Q Consensus 74 ~~~~fHC~~C~~C-----~s~~l-------~~~H~CiE~s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~- 139 (220)
+++...|+.|+.- +...+ ...=.|.+= ..|.||...- + ...+.. -.|...||..|++.=|.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~-~~~ll~Cd~C~~~yH~~Cl~ppl~~ 94 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-N-DDQLLFCDDCDRGYHMYCLNPPVAE 94 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-T-TTTEEECSSSCCEEETTTSSSCCSS
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-C-CCceEEcCCCCccccccccCCCccC
Confidence 4688999999754 44321 112223221 1577887641 1 122222 27899999999985433
Q ss_pred --CCCCCCCCCCcCc
Q 027651 140 --RDKYCCPICSKSV 152 (220)
Q Consensus 140 --~~~~~CPiCrksi 152 (220)
.+...||.|...+
T Consensus 95 ~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 95 PPEGSWSCHLCWELL 109 (114)
T ss_dssp CCSSCCCCHHHHHHH
T ss_pred CCCCCeECccccchh
Confidence 2457788886543
No 84
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.73 E-value=0.19 Score=36.82 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=42.2
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHHHHHHHHHHhcCCChhhhcCeeE
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVW 181 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD~~i~~~pmP~~y~~~~v~ 181 (220)
|+..||.|.-+|..... +.....|-..+.. .-.||-|+.++....+ -+ .++
T Consensus 1 M~~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~--~afCPeCgq~Le~lkA------------------CG-A~~ 51 (81)
T 2jrp_A 1 MEITCPVCHHALERNGD--------TAHCETCAKDFSL--QALCPDCRQPLQVLKA------------------CG-AVD 51 (81)
T ss_dssp CCCCCSSSCSCCEECSS--------EEECTTTCCEEEE--EEECSSSCSCCCEEEE------------------TT-EEE
T ss_pred CCCCCCCCCCccccCCC--------ceECccccccCCC--cccCcchhhHHHHHHh------------------cC-CcC
Confidence 45789999988754322 2223444444443 2489999988874211 12 258
Q ss_pred EEccCCCC---cceeeeeEe
Q 027651 182 ILCNDCND---TTEVYFHII 198 (220)
Q Consensus 182 I~CnDC~~---~s~~~~H~l 198 (220)
++||.|++ |+.|.|.+.
T Consensus 52 yFC~~C~~LiSkkrv~f~~~ 71 (81)
T 2jrp_A 52 YFCQNGHGLISKKRVNFVIS 71 (81)
T ss_dssp ECCTTTTCCCCTTSSEEEEC
T ss_pred eeeccCCCEeecceEEEEec
Confidence 99999995 566777665
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.57 E-value=2.3 Score=31.83 Aligned_cols=57 Identities=19% Similarity=0.424 Sum_probs=42.5
Q ss_pred ecCCCCCCCccchhhccccCCceEE---ccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 98 IENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 98 iE~s~~~~CPICle~lf~s~~~v~~---LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
........|-||.+++-...+.-.+ .-|+=.+.+.|++.-.+.++..||-|+..+-.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3444567899999995333222122 26899999999999988889999999988863
No 86
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=72.35 E-value=0.64 Score=34.94 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCCccchhhccccCCceE-EccCCCccChHHHHHHhcC-------CCCCCCCCCc
Q 027651 104 HHCPICYEYLFDSLRNTT-VMKCGHTMHCECYHEMIKR-------DKYCCPICSK 150 (220)
Q Consensus 104 ~~CPICle~lf~s~~~v~-~LpCGH~~H~~C~~~~l~~-------~~~~CPiCrk 150 (220)
..|+.|.+. .+....++ ---|...+|..|+...... ..+.||.|..
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 345666544 22222232 2378999999998643220 2378999974
No 87
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=70.97 E-value=3.2 Score=28.65 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCCCccchhhccccCCceEE-ccCCCccChHHHHHHhcC---CCCCCCCCCcC
Q 027651 102 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---DKYCCPICSKS 151 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~~---~~~~CPiCrks 151 (220)
....|-||.+. .+ +.. -.|...||..|++..|.. +...||.|...
T Consensus 11 ~~~~C~vC~~~----~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34568999753 22 222 278999999999877653 46889999753
No 88
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=66.83 E-value=2 Score=35.47 Aligned_cols=52 Identities=21% Similarity=0.490 Sum_probs=34.3
Q ss_pred CCCCccchhhccccCC--ceEEc-cCCCccChHHHHH------Hhc----CCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLR--NTTVM-KCGHTMHCECYHE------MIK----RDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~--~v~~L-pCGH~~H~~C~~~------~l~----~~~~~CPiCrksi~d 154 (220)
...||||.....++.. ..+.- .|...||..|..- .+. ...|.||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 3569999987544322 13332 6899999999842 111 026999999998774
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.53 E-value=3.4 Score=26.51 Aligned_cols=45 Identities=18% Similarity=0.561 Sum_probs=28.6
Q ss_pred CCccchhhccccCCceEE-ccCCCccChHHHHHHhc---CCCCCCCCCCcC
Q 027651 105 HCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICSKS 151 (220)
Q Consensus 105 ~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~---~~~~~CPiCrks 151 (220)
.|.||... -+ ...+.. -.|.-.||..|++.=+. .+...||.|.+.
T Consensus 2 ~C~vC~~~-~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777764 11 122222 27889999999975433 246789999764
No 90
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.72 E-value=3.5 Score=31.24 Aligned_cols=9 Identities=33% Similarity=0.718 Sum_probs=5.0
Q ss_pred CcccCCCCC
Q 027651 59 GQFHCDDCG 67 (220)
Q Consensus 59 ~~yHC~~Cg 67 (220)
.+-.||+||
T Consensus 60 ~~a~CPdC~ 68 (101)
T 2jne_A 60 MKALCPDCH 68 (101)
T ss_dssp EEEECTTTC
T ss_pred ccccCcchh
Confidence 445566655
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=63.13 E-value=5.7 Score=31.18 Aligned_cols=67 Identities=18% Similarity=0.449 Sum_probs=41.8
Q ss_pred CcCccccccccCcceeecCCCCCCCccchhhccccCCceEE-ccCCCccChHHHHHHh----------cCCCCCCCCCCc
Q 027651 82 RCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----------KRDKYCCPICSK 150 (220)
Q Consensus 82 ~C~~C~s~~l~~~H~CiE~s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l----------~~~~~~CPiCrk 150 (220)
.|..|...-+...-.-.|...+..|.||.+. . .+.. =.|-.+||..|+..-+ ..+...|++|.-
T Consensus 36 ~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 36 ICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp EEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred eCHhHHhhhhccccccCCCCCCCcCeecCCC----C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3444444333333334566677889999875 1 1211 1688999999998642 235689999976
Q ss_pred Ccc
Q 027651 151 SVI 153 (220)
Q Consensus 151 si~ 153 (220)
+-.
T Consensus 111 ~pl 113 (129)
T 3ql9_A 111 EPL 113 (129)
T ss_dssp GGG
T ss_pred HHH
Confidence 543
No 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.40 E-value=3.9 Score=29.84 Aligned_cols=43 Identities=23% Similarity=0.599 Sum_probs=20.8
Q ss_pred ccccccccceEEeCCCCCCCcccccccccCccc--------ceecCCccccc
Q 027651 9 HELVRQDVKQVICSVCDTEQPVAQVCTNCGVNM--------GEYFCDICKFY 52 (220)
Q Consensus 9 H~l~R~~v~~i~C~~C~~~q~~~~~C~~Cg~~~--------a~yfC~~C~l~ 52 (220)
++|++. -....|..|+..-+....|..||..+ +.|||.-|+=+
T Consensus 10 ~~l~~~-~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 10 HALERN-GDTAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGL 60 (81)
T ss_dssp SCCEEC-SSEEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred CccccC-CCceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence 345443 22344666665444333555544443 25666666433
No 93
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=62.12 E-value=2.1 Score=25.20 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=18.0
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHH
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 134 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~ 134 (220)
|...||.|....+.. +.+. .=|..+|+.||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 445688887775543 2222 23778888774
No 94
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.87 E-value=1 Score=30.39 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCCCCccchhhccccCCceEE-ccCCCccChHHHHHHhc----CCCCCCCCCCcCc
Q 027651 102 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK----RDKYCCPICSKSV 152 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~----~~~~~CPiCrksi 152 (220)
....||||..+..+ ....+. -.|.-.||..|+.--.. ...|.||.|+..-
T Consensus 5 e~~~C~~C~~~~~~-~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAA-DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCS-SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCC-CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 34579999887422 223333 27899999999864321 1468899987543
No 95
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=57.55 E-value=4.2 Score=27.57 Aligned_cols=42 Identities=19% Similarity=0.471 Sum_probs=28.8
Q ss_pred CCCCCccchhhccc---cCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~---s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
....|+-|.+.+.. ....+.++ |..+|..| ++|-.|++++.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTT---------CBCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCccc---------CEehhcCCCCCC
Confidence 35679999998764 22334444 67788766 478889998863
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.60 E-value=1.5 Score=29.73 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=32.4
Q ss_pred CCCCCCccchhhccccCCceEEc--cCCCccChHHHHHHh------cCCCCCCCCCCcC
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMI------KRDKYCCPICSKS 151 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l------~~~~~~CPiCrks 151 (220)
..+..|.||... ++......++ .|.-.||..|+..-+ ..+...||.|...
T Consensus 4 ~~~~~C~vC~~~-~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEE-YSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCC-CCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCC-CCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 345679999975 2222222333 789999999997532 3356788888654
No 97
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.38 E-value=5.8 Score=26.78 Aligned_cols=43 Identities=16% Similarity=0.396 Sum_probs=29.5
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
.....|+-|.+.+......+.++ |..+|..| ++|-.|++++.+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSN--GELYHEQC---------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEET--TEEECTTT---------CCCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEeC--ccEecccc---------CeECCCCCCCCC
Confidence 44577999999876433333343 67788766 478889988875
No 98
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=56.05 E-value=5.6 Score=26.73 Aligned_cols=47 Identities=21% Similarity=0.575 Sum_probs=32.0
Q ss_pred CCCCCCCccchhhccccCCceEE-ccCCCccChHHHHHHhc---CCCCCCCCCCcC
Q 027651 100 NSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICSKS 151 (220)
Q Consensus 100 ~s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~---~~~~~CPiCrks 151 (220)
...+..|.||.+. . .+.. -.|--.||..|+..-+. .+...||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3445679999863 1 2222 26888999999987432 356889999753
No 99
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.27 E-value=6.4 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.489 Sum_probs=27.3
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
...|+.|.+.+......+.++ |..+|..| ++|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL--DRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS--SSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEEC--CCeEcccC---------CcccccCCcCC
Confidence 467899988876532333333 77888766 47888998885
No 100
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.18 E-value=4.9 Score=27.56 Aligned_cols=42 Identities=19% Similarity=0.522 Sum_probs=27.9
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
....|+.|.+.+......+.+ =|..+|..|| +|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEEC--SSCEEETTTC---------CCSSSCCCCTT
T ss_pred cCCcCccCCcccccCceEEEE--CccccccccC---------chhhCCCccCC
Confidence 346799999887543222333 3778886654 78889988874
No 101
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=54.69 E-value=7.2 Score=25.75 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=15.5
Q ss_pred cceecCCcc-ccccCCC--CCCcccCCCCCc
Q 027651 41 MGEYFCDIC-KFYDDDI--EKGQFHCDDCGI 68 (220)
Q Consensus 41 ~a~yfC~~C-~l~dd~~--~k~~yHC~~Cgi 68 (220)
|+.|-|..| +-|++++ -.+--+|+.||.
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 456777777 4555543 235668888886
No 102
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=52.83 E-value=2.3 Score=29.56 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCCccchhhccccCCceEEc-cCCCccChHHHHHHhcC---CCCCCCCCCcCcc
Q 027651 104 HHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKR---DKYCCPICSKSVI 153 (220)
Q Consensus 104 ~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~~---~~~~CPiCrksi~ 153 (220)
..|+||... .+ ....+.- .|.-.||..|+..-+.. ..+.||.|...+.
T Consensus 19 ~~C~~C~~~-~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKP-DD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBC-CS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCC-CC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 459999876 22 1222222 78999999999754432 4688999976543
No 103
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=52.82 E-value=10 Score=25.33 Aligned_cols=28 Identities=25% Similarity=0.738 Sum_probs=15.6
Q ss_pred CCcccCCCCCc-cccCCccceeecCCcCc
Q 027651 58 KGQFHCDDCGI-CRIGGRENYFHCKRCGS 85 (220)
Q Consensus 58 k~~yHC~~Cgi-CR~G~~~~~fHC~~C~~ 85 (220)
+...-||.||. .-+....+.++|.+|+.
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCC
Confidence 34566666664 22223356777777765
No 104
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.36 E-value=5.5 Score=30.07 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=18.0
Q ss_pred CCcccccccccCcccceecCCccccccCCCCCCcc-cCCCCCcc
Q 027651 27 EQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQF-HCDDCGIC 69 (220)
Q Consensus 27 ~q~~~~~C~~Cg~~~a~yfC~~C~l~dd~~~k~~y-HC~~CgiC 69 (220)
.+|+.-.|.+||..|.- +...+ .||.||-=
T Consensus 69 ~~p~~~~C~~CG~~~e~-------------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP-------------NALDYGVCEKCHSK 99 (119)
T ss_dssp EECCEEECSSSSCEECS-------------CCSTTCCCSSSSSC
T ss_pred eccceEEcCCCCCEEeC-------------CCCCCCcCccccCC
Confidence 45566667777666532 23456 67777754
No 105
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=50.99 E-value=16 Score=22.07 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=10.3
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.|.|++|.+++...+
T Consensus 4 ~~~C~~C~~~f~~~~ 18 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY 18 (57)
T ss_dssp -CBCTTTCCBCSCHH
T ss_pred CccCCCCcchhCChH
Confidence 477888888877543
No 106
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=50.96 E-value=3.2 Score=33.31 Aligned_cols=52 Identities=25% Similarity=0.649 Sum_probs=29.1
Q ss_pred EeCCCCCCCcccccccccCc---ccceecCCccccccCCCCCCcccCCCCCccccC
Q 027651 20 ICSVCDTEQPVAQVCTNCGV---NMGEYFCDICKFYDDDIEKGQFHCDDCGICRIG 72 (220)
Q Consensus 20 ~C~~C~~~q~~~~~C~~Cg~---~~a~yfC~~C~l~dd~~~k~~yHC~~CgiCR~G 72 (220)
.|..|+.. -..-.|.-|.- .-.-|-|+.|.+=--...++-|||+.||.|---
T Consensus 73 ~C~~Cg~~-f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 73 TCEDCSTL-FGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp BCSSSCCB-SCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred cCCCCCcc-ceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 45555432 12223555532 234455555544433346899999999999543
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.81 E-value=6.6 Score=27.88 Aligned_cols=65 Identities=20% Similarity=0.562 Sum_probs=37.6
Q ss_pred ccceeecCCcCccccccccCcceeecCCCCCCCccchhhccccCCceEEc-cCCCccChHHHHHHhc---CC-CCCCCCC
Q 027651 74 RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIK---RD-KYCCPIC 148 (220)
Q Consensus 74 ~~~~fHC~~C~~C~s~~l~~~H~CiE~s~~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~---~~-~~~CPiC 148 (220)
+.++..|+.|.. ...=.|. +..|.||... .+ ...+..- .|.-.||..|++.=|. .+ ...||.|
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~----~c~C~vC~~~-~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCH----SCSCRVCGGK-HE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCS----SSSCSSSCCC-CC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred ccCCccChhhcC------CCCeECC----CCCCcCcCCc-CC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCc
Confidence 356666666654 1223343 2368888763 11 1222222 7889999999985443 24 5789888
Q ss_pred Cc
Q 027651 149 SK 150 (220)
Q Consensus 149 rk 150 (220)
..
T Consensus 75 ~~ 76 (77)
T 2e6s_A 75 KT 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 108
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.46 E-value=7.9 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=26.6
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+.+ ..+.+ =|..+|..| ++|-.|++.+.+
T Consensus 15 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG--PFMVA--GEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS--CCBCC--TTCCBCTTS---------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCc--eEEEE--CCceecccc---------CCccCCCCccCC
Confidence 4568999988762 22333 377888665 578889998864
No 109
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.98 E-value=6.2 Score=26.25 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=27.7
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+..... .+..=|..+|..|| +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR--KLEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC--EECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc--EEEECccccCcccC---------eECCCCCcCCC
Confidence 4578999988764322 22234778887664 78889988864
No 110
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.86 E-value=9 Score=23.42 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=11.0
Q ss_pred CCCCCCCcCccch
Q 027651 143 YCCPICSKSVIDM 155 (220)
Q Consensus 143 ~~CPiCrksi~dm 155 (220)
+.||+|++.+.+-
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 7899999999863
No 111
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=47.12 E-value=6.1 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.479 Sum_probs=31.5
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhc---CCCCCCCCCCcCcc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSVI 153 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrksi~ 153 (220)
..+..|.||.+. .+-+.--.|.-.||..|+..-+. .+...||.|.....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 445678888753 11111126889999999985443 35678999986543
No 112
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.70 E-value=7.4 Score=34.58 Aligned_cols=50 Identities=22% Similarity=0.570 Sum_probs=32.8
Q ss_pred CCCCCCCCcCccchhHHHHHHHHHHHhcCCChhhhcCeeEEEccCCCCcceeeeeEeeecCCCCCCc
Q 027651 142 KYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSY 208 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~Sy 208 (220)
+..||+|+..-.- +.. + .. ....+. -...|+-|+ ..+|+.-.||++||+-
T Consensus 182 ~~~CPvCGs~P~~-s~l-~-~~---------g~~~G~-R~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMA-GMI-R-QG---------GKETGL-RYLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEE-EEE-E-C-------------CCE-EEEEETTTC----CEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCce-eEE-e-ec---------CCCCCc-EEEEeCCCC----CEEeecCcCCcCCCCC
Confidence 4789999976541 110 0 00 011233 478999999 6788999999999984
No 113
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=46.17 E-value=21 Score=26.31 Aligned_cols=32 Identities=19% Similarity=0.553 Sum_probs=23.3
Q ss_pred CCCCCCccchhhccccCCceEEcc---CCCccChHHHHHH
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM 137 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~Lp---CGH~~H~~C~~~~ 137 (220)
..+..|+||-. |++.. .+| |+-.||..|+...
T Consensus 13 ~~D~~C~VC~~--~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--ccccc---eeccccccccccHhhcccc
Confidence 35778999975 33322 344 6999999999997
No 114
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=46.13 E-value=6.1 Score=23.19 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.2
Q ss_pred CCCCCCCCcCccchhH
Q 027651 142 KYCCPICSKSVIDMSR 157 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~ 157 (220)
+++||+|+..+.|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5799999999988654
No 115
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.08 E-value=11 Score=25.04 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=28.3
Q ss_pred CCCCccchhhccc--cCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~--s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+-|.+++.. +...+. .=|..+|..|| +|-.|++++.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC---------EeccCCCcCCC
Confidence 4679999998764 222222 34788897764 78899998863
No 116
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=45.55 E-value=13 Score=22.55 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=8.3
Q ss_pred CCCCCCCcCccch
Q 027651 143 YCCPICSKSVIDM 155 (220)
Q Consensus 143 ~~CPiCrksi~dm 155 (220)
|.|++|.+.+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 5677777766653
No 117
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.03 E-value=10 Score=25.95 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=27.5
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
....|+.|.+++......+.+ =|..+|..| ++|-.|++++.+
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFY--EDRHFHEGC---------FRCCRCQRSLAD 55 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCC--SSCCCBTTT---------SBCTTTCCBCSS
T ss_pred cCCcCccCCCccccCcEEEEe--CCccccccC---------CeecCCCCccCC
Confidence 345799999887632222222 367888765 478899998873
No 118
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.91 E-value=10 Score=25.10 Aligned_cols=41 Identities=20% Similarity=0.527 Sum_probs=27.4
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+......+.+ =|..+|..| ++|-.|++++.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC---------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT---------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC---------CcccccCCccCC
Confidence 45789999887653233333 367778665 478889988874
No 119
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=43.83 E-value=9.8 Score=25.98 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=23.0
Q ss_pred hcCeeEEEccCCCCcceeeeeEeeecCCCCC
Q 027651 176 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK 206 (220)
Q Consensus 176 ~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~ 206 (220)
++.+..|+|.-||.+ .||+--..|..||
T Consensus 12 r~~ktH~~CrRCG~~---syH~qK~~Ca~CG 39 (57)
T 1vq8_1 12 KNTTTHTKCRRCGEK---SYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCCEEECTTTCSE---EEETTTTEETTTC
T ss_pred cCCCccccccccCCh---hhhcccccccccc
Confidence 445789999999974 6788888899998
No 120
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=43.74 E-value=22 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=21.0
Q ss_pred ccccceEEeCCCCCCCcc-cccccccCc
Q 027651 13 RQDVKQVICSVCDTEQPV-AQVCTNCGV 39 (220)
Q Consensus 13 R~~v~~i~C~~C~~~q~~-~~~C~~Cg~ 39 (220)
.+....++|+.|....|+ +..|..||.
T Consensus 14 k~~~~k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 14 QRVFLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp TCSCCCEEETTTCCEECTTCSSCTTTCC
T ss_pred HHHhchhhhccccCcCCcccccccCCCC
Confidence 445568999999998877 567888874
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=43.61 E-value=22 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=19.6
Q ss_pred cCCCccChHHHHH------HhcCCCCCCCCCC
Q 027651 124 KCGHTMHCECYHE------MIKRDKYCCPICS 149 (220)
Q Consensus 124 pCGH~~H~~C~~~------~l~~~~~~CPiCr 149 (220)
.|+..||..|+.. .+..+...||-|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 7899999999952 3344567788886
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.02 E-value=6.1 Score=26.78 Aligned_cols=39 Identities=26% Similarity=0.643 Sum_probs=27.2
Q ss_pred CCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 105 ~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
.|+.|.+.+... +.+.++ |..+|..| ++|..|++++.+.
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~C---------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPC---------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTT---------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCC---------CCccccCccCCCC
Confidence 478888886543 234444 88888765 4788999988753
No 123
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=42.37 E-value=11 Score=28.24 Aligned_cols=31 Identities=39% Similarity=0.831 Sum_probs=25.6
Q ss_pred hcCeeEEEccCCCCcceeeeeEeeecCCCCC-------Ccc
Q 027651 176 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 209 (220)
Q Consensus 176 ~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~-------SyN 209 (220)
++.+..|+|.-||. ..||+--..|..|| +||
T Consensus 11 r~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 3iz5_l 11 RRNKTHTLCVRCGR---RSFHLQKSTCSSCGYPAARIRKYN 48 (94)
T ss_dssp CCCCSEEECTTTCS---EEEEGGGTEETTTCSSCSSCCCCS
T ss_pred cCCCccceecCcCc---hhhhcccccccccCCchhhccccc
Confidence 34567999999997 56788888999999 777
No 124
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.27 E-value=13 Score=25.16 Aligned_cols=68 Identities=18% Similarity=0.365 Sum_probs=41.9
Q ss_pred CCCCccchhhccc--cCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHHHHHHHHHHhcCCChhhhcCee
Q 027651 103 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKV 180 (220)
Q Consensus 103 ~~~CPICle~lf~--s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD~~i~~~pmP~~y~~~~v 180 (220)
...|+.|.+++.. ....+.+ =|..+|..|| +|-.|++++.+. .++ ..--
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF---------~C~~C~~~L~~~-~f~-----------------~~~g 55 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF---------NCGKCSVSLVGK-GFL-----------------TQNK 55 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC---------BCTTTCCBCSSS-CEE-----------------EETT
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC---------ChhhCCCcCCCC-ceE-----------------eECC
Confidence 4579999998764 2233333 4678887764 788999988631 111 1113
Q ss_pred EEEccCCCCcceeeeeEeeecCCCC
Q 027651 181 WILCNDCNDTTEVYFHIIGQKCSHC 205 (220)
Q Consensus 181 ~I~CnDC~~~s~~~~H~lg~kC~~C 205 (220)
.++|.+|-.+- ++-+|..+
T Consensus 56 ~~yC~~cy~~~------f~~~C~~~ 74 (76)
T 1x68_A 56 EIFCQKCGSGM------DTDISGPS 74 (76)
T ss_dssp EEEETTTTCCC------CCCSSSSS
T ss_pred EEECHHHhhhh------hCCcCCCC
Confidence 58999988643 34466543
No 125
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.03 E-value=1.8 Score=31.42 Aligned_cols=54 Identities=22% Similarity=0.505 Sum_probs=35.9
Q ss_pred CCCCCccchhhccccCCceEEc--cCCCccChHHHHHHh-------cCCCCCCCCCCcCccchh
Q 027651 102 MHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMI-------KRDKYCCPICSKSVIDMS 156 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l-------~~~~~~CPiCrksi~dm~ 156 (220)
....|.||... ........++ .|.-.||..|+..-| ..+...||.|......|.
T Consensus 15 ~~~~C~vC~~~-~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 15 MGLACVVCRQM-TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HCCSCSSSCCC-CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCcCCCCCCC-CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 35679999875 2211123333 789999999998643 335688999986665544
No 126
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=41.63 E-value=8.8 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCCCCCccchhhccccCCceEEc-cCCCccChHHHHHHhc---CCCCCCCCCCcCc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIK---RDKYCCPICSKSV 152 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~---~~~~~CPiCrksi 152 (220)
..+..|.||... + .+..- .|.-.||..|+..-+. .+...||.|++.-
T Consensus 5 ~~~~~C~~C~~~----g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445679999754 1 11111 6789999999976554 3568999998753
No 127
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=40.86 E-value=11 Score=28.27 Aligned_cols=31 Identities=32% Similarity=0.851 Sum_probs=26.0
Q ss_pred hcCeeEEEccCCCCcceeeeeEeeecCCCCC-------Ccc
Q 027651 176 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 209 (220)
Q Consensus 176 ~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~-------SyN 209 (220)
++.+..|+|.-||. ..||+--..|..|| +||
T Consensus 11 r~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 11 RHQKTHTLCRRCGK---ATYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCCCEEECTTTCS---EEEETTTTEESSSCGGGSSCCCCT
T ss_pred cCCCccceecCcCc---hhhhhccccccccCCcHHHhcCcc
Confidence 34567999999997 56788888999999 999
No 128
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.51 E-value=11 Score=24.72 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=8.3
Q ss_pred CCCcccccccccCc
Q 027651 26 TEQPVAQVCTNCGV 39 (220)
Q Consensus 26 ~~q~~~~~C~~Cg~ 39 (220)
+++..-..|..||.
T Consensus 14 kv~~~~k~CP~CG~ 27 (50)
T 3j20_Y 14 KVIRKNKFCPRCGP 27 (50)
T ss_dssp CEECSSEECSSSCS
T ss_pred EEEEecccCCCCCC
Confidence 44455566777765
No 129
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.36 E-value=21 Score=24.85 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=30.4
Q ss_pred CCCccchhhccccCCceEE-ccCCCccChHHHHHHh----cCCCCCCCCCCcCcc
Q 027651 104 HHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----KRDKYCCPICSKSVI 153 (220)
Q Consensus 104 ~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l----~~~~~~CPiCrksi~ 153 (220)
.-| ||..+. +.....+. -.|.-.||..|+.--. ....+.||.|+....
T Consensus 13 ~~C-~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPY-NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSC-CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCcc-CCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345 887763 21223333 2789999999994211 124799999997654
No 130
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.07 E-value=12 Score=26.58 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
...|+.|.+.+......+.++ |..+|..| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK--NRFWHDTC---------FRCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET--TEEEETTT---------CCCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEEC--ccChhhcC---------CcccccCCCCC
Confidence 456778877765322333333 56666655 36777777775
No 131
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.41 E-value=18 Score=33.17 Aligned_cols=48 Identities=19% Similarity=0.524 Sum_probs=33.3
Q ss_pred CCCCccchhhccccCCceEEccCCCc--cChHHHHHHhc-CCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~--~H~~C~~~~l~-~~~~~CPiCrksi~ 153 (220)
...|||=+..| ..+++...|.|. |=..=|-++.. ....+||+|++.+.
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 34788877764 357888999987 54444444432 35699999999885
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.14 E-value=8.9 Score=27.74 Aligned_cols=50 Identities=24% Similarity=0.552 Sum_probs=32.5
Q ss_pred CCCCCccchhhccccCCceEEc---cCCCccChHHHHHH-hcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEM-IKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~L---pCGH~~H~~C~~~~-l~~~~~~CPiCrksi~ 153 (220)
.+..|.||.+.-.+ ..-.+| .|.-.||..|+..- +..+...||.|.....
T Consensus 24 ~~~~C~vC~~~~s~--~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSC--SEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCC--CCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 45679999875211 222222 68889999999743 3445688888875443
No 133
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.00 E-value=15 Score=25.20 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=28.6
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
.....|+-|.+.+.+ ..+. .=|..+|..| ++|-.|++++..
T Consensus 13 ~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIIDE--QPLI--FKNDPYHPDH---------FNCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCCS--CCCC--CSSSCCCTTT---------SBCSSSCCBCCT
T ss_pred cCCCCCccCCCEecc--eEEE--ECcceeCCCC---------CEeCCCCCccCC
Confidence 335679999998762 2233 3477888765 578899999875
No 134
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.91 E-value=23 Score=25.34 Aligned_cols=44 Identities=20% Similarity=0.531 Sum_probs=33.1
Q ss_pred CCCccccccccceEEeCCCCCC-CcccccccccCcccceecCCccccccC
Q 027651 6 YDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGEYFCDICKFYDD 54 (220)
Q Consensus 6 ~~~H~l~R~~v~~i~C~~C~~~-q~~~~~C~~Cg~~~a~yfC~~C~l~dd 54 (220)
.+++..+..+++...|..|.+. +..+-.|. || ..||++=++-|+
T Consensus 13 ~~~~~~~~~k~~~nRC~~CrKkvgL~gf~Cr-Cg----~~FCs~HRy~e~ 57 (74)
T 1wfl_A 13 SEEKAPELPKPKKNRCFMCRKKVGLTGFDCR-CG----NLFCGLHRYSDK 57 (74)
T ss_dssp CCCCCCCCCCSCTTBCSSSCCBCGGGCEECT-TS----CEECSSSCSTTT
T ss_pred ccccCcccCCCcCCcChhhCCcccccCeecC-CC----CEechhcCCCcc
Confidence 3566777777777889999874 77778888 87 567888777655
No 135
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.67 E-value=9.2 Score=26.68 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=32.1
Q ss_pred cCCCCCCCccchhhccccCCceEEc-cCCCccChHHHHHH-hcCCCCCCCCCC
Q 027651 99 ENSMHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEM-IKRDKYCCPICS 149 (220)
Q Consensus 99 E~s~~~~CPICle~lf~s~~~v~~L-pCGH~~H~~C~~~~-l~~~~~~CPiCr 149 (220)
+......|.||.+.-.+....++.- .|.-.||..|+..- +..+...||.|.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 4455678999987521222222222 78899999999742 334567787775
No 136
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=37.23 E-value=22 Score=17.62 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=11.3
Q ss_pred CCCCCCCcCccchh
Q 027651 143 YCCPICSKSVIDMS 156 (220)
Q Consensus 143 ~~CPiCrksi~dm~ 156 (220)
|.|++|++++...+
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 68999999988643
No 137
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=37.18 E-value=5.5 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCccchhhccccCCceEE-c-cCCCccChHHHHHHh---cCCCCCCCCCC
Q 027651 105 HCPICYEYLFDSLRNTTV-M-KCGHTMHCECYHEMI---KRDKYCCPICS 149 (220)
Q Consensus 105 ~CPICle~lf~s~~~v~~-L-pCGH~~H~~C~~~~l---~~~~~~CPiCr 149 (220)
.|+||..+..+ ....+. - .|.-.||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~-~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47888877432 233333 2 588899999985221 12579999885
No 138
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=37.17 E-value=19 Score=32.78 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=32.8
Q ss_pred CCccchhhccccCCceEEccCCCc--cChHHHHHHhc-CCCCCCCCCCcCcc
Q 027651 105 HCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 153 (220)
Q Consensus 105 ~CPICle~lf~s~~~v~~LpCGH~--~H~~C~~~~l~-~~~~~CPiCrksi~ 153 (220)
.|||=+..| ..+++...|.|. |=..=|-++.. ....+||+|++.+.
T Consensus 217 ~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 217 MCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp BCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 688877664 357888899987 55444444433 35689999999986
No 139
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=37.06 E-value=18 Score=25.35 Aligned_cols=6 Identities=67% Similarity=1.963 Sum_probs=3.2
Q ss_pred cCCCCC
Q 027651 62 HCDDCG 67 (220)
Q Consensus 62 HC~~Cg 67 (220)
+|+.||
T Consensus 47 rCp~CG 52 (70)
T 1twf_L 47 RCKDCG 52 (70)
T ss_dssp CCSSSC
T ss_pred cCCCCC
Confidence 555555
No 140
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.72 E-value=25 Score=17.68 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=12.6
Q ss_pred CCCCCCCCcCccchhH
Q 027651 142 KYCCPICSKSVIDMSR 157 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~ 157 (220)
.|.|++|.+.+...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999986543
No 141
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.39 E-value=15 Score=25.64 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 100 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 100 ~s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
......|+.|.+.+.. +.+. .=|..+|..| ++|-.|++.+.+
T Consensus 22 ~~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRG--PFLV--ALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCCS--CEEE--ETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCCCCccCCCEecc--eEEE--ECCccccccC---------CccCCCCCCCCC
Confidence 4456679999998742 3333 3478888765 478899998874
No 142
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.96 E-value=17 Score=24.51 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=26.9
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+.+ +.+.++ |..+|..| ++|-.|++++.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a~--~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSAM--DTVWHPEC---------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEET--TEEECTTT---------CBCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEEEC--CCeEecCc---------CChhhCCCCCCC
Confidence 4578889888754 334333 66777665 478889998875
No 143
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=35.79 E-value=26 Score=22.59 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.4
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..+.|++|.+.+...+.
T Consensus 28 ~~~~C~~C~~~f~~~~~ 44 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSD 44 (82)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeeCCcCChhhCCHHH
Confidence 45889999988876443
No 144
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.49 E-value=27 Score=17.31 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.3
Q ss_pred CCCCCCCCcCccchhH
Q 027651 142 KYCCPICSKSVIDMSR 157 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~ 157 (220)
.+.|+.|.+.+...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3789999999886443
No 145
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=34.95 E-value=21 Score=21.90 Aligned_cols=13 Identities=15% Similarity=0.871 Sum_probs=8.8
Q ss_pred CCCCCCCcCccch
Q 027651 143 YCCPICSKSVIDM 155 (220)
Q Consensus 143 ~~CPiCrksi~dm 155 (220)
|.|++|.+.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (60)
T 2adr_A 3 FVCEVCTRAFARQ 15 (60)
T ss_dssp BCCTTTCCCBSCH
T ss_pred CcCCCCccccCCH
Confidence 6677777777653
No 146
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.81 E-value=27 Score=17.49 Aligned_cols=15 Identities=13% Similarity=0.762 Sum_probs=12.0
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.+.|++|.+++...+
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 2 SFVCEVCTRAFARQE 16 (29)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 378999999998643
No 147
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.63 E-value=16 Score=27.84 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=22.6
Q ss_pred eeEEEccCCCCcceeeeeEeeecCCCCCCccccc
Q 027651 179 KVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRS 212 (220)
Q Consensus 179 ~v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~ 212 (220)
..-..|.|||-+.. .-=...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~-~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCC-CCSSCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeec-ccCCCCCCCcCCCCCccCC
Confidence 34567999997751 0001346999999999764
No 148
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.44 E-value=18 Score=23.86 Aligned_cols=40 Identities=28% Similarity=0.749 Sum_probs=27.4
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
...|+.|.+.+.+ ..+.++ |..+|..|| +|-.|++.+.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKAM--NNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEET--TEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEEC--cccccccCC---------EeCCCCCcCCCC
Confidence 4568888888753 333333 677887664 788899888753
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.00 E-value=21 Score=24.55 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=29.0
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
....|+-|.+.+... +.+.++ |..+|..| ++|-.|++.+.+
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~C---------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSC---------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--Cccccccc---------CCcCcCCCCcCC
Confidence 456799999987643 334444 67888765 578899988863
No 150
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.94 E-value=20 Score=24.38 Aligned_cols=39 Identities=21% Similarity=0.604 Sum_probs=27.1
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+.. +.+.+ =|..+|..| ++|-.|++.+.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~wH~~C---------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVSA--LGKTYHPDC---------FVCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEEE--TTEEECTTT---------SSCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEEE--CCceeCccC---------CccccCCCCCCC
Confidence 4579999998762 33333 367888665 478889998864
No 151
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.84 E-value=21 Score=23.79 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=8.6
Q ss_pred cceecCCccccc
Q 027651 41 MGEYFCDICKFY 52 (220)
Q Consensus 41 ~a~yfC~~C~l~ 52 (220)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 567888888554
No 152
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.14 E-value=15 Score=24.05 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccch
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 155 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 155 (220)
.....|+.|.+.+......+. .=|..+|..|+ +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCCceEEE--eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 345679999998754322122 33667787665 788899988753
No 153
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.78 E-value=35 Score=21.90 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=9.9
Q ss_pred CCCCCCCCcCccch
Q 027651 142 KYCCPICSKSVIDM 155 (220)
Q Consensus 142 ~~~CPiCrksi~dm 155 (220)
.|.|++|.+.+...
T Consensus 17 ~~~C~~C~k~f~~~ 30 (74)
T 2lce_A 17 PYKCDRCQASFRYK 30 (74)
T ss_dssp SBCCTTSSCCBSCH
T ss_pred CeECCCCCceeCCH
Confidence 47777777777754
No 154
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=32.73 E-value=21 Score=22.74 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=3.8
Q ss_pred eeecCCcCc
Q 027651 77 YFHCKRCGS 85 (220)
Q Consensus 77 ~fHC~~C~~ 85 (220)
-|-|..||.
T Consensus 39 ~~~C~~C~k 47 (62)
T 1vd4_A 39 TFRCTFCHT 47 (62)
T ss_dssp EEBCSSSCC
T ss_pred CEECCCCCC
Confidence 344444443
No 155
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.73 E-value=26 Score=23.01 Aligned_cols=12 Identities=33% Similarity=1.027 Sum_probs=8.8
Q ss_pred cceecCCccccc
Q 027651 41 MGEYFCDICKFY 52 (220)
Q Consensus 41 ~a~yfC~~C~l~ 52 (220)
|++|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (52)
T 1e8j_A 1 MDIYVCTVCGYE 12 (52)
T ss_dssp CCCEECSSSCCC
T ss_pred CCcEEeCCCCeE
Confidence 567888888654
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.72 E-value=17 Score=25.11 Aligned_cols=42 Identities=26% Similarity=0.613 Sum_probs=28.9
Q ss_pred CCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
.....|+.|.+.+... +.+.+ =|..+|..| ++|-.|++++..
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~a--~~~~wH~~C---------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLCV--NGHFFHRSC---------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCCB--TTBCCBTTT---------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccc-eEEEE--CCCeeCCCc---------CEEcCCCCCcCC
Confidence 4456799999987543 22333 377888776 478889988875
No 157
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.18 E-value=25 Score=22.98 Aligned_cols=38 Identities=24% Similarity=0.601 Sum_probs=26.8
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
...|+.|.+.+.. +.+.++ |..+|..|| +|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITYQ--DQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEET--TEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEEC--ccccccCcC---------EECCCCCCCC
Confidence 4578999988753 334443 678887664 7888998886
No 158
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=31.96 E-value=30 Score=18.74 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=12.9
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.||+|.+++...+
T Consensus 10 k~~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSD 25 (37)
T ss_dssp SSBCCTTTCCCBSSHH
T ss_pred CCccCCCCCcccCcHH
Confidence 3589999999998644
No 159
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.72 E-value=4.3 Score=26.73 Aligned_cols=44 Identities=20% Similarity=0.633 Sum_probs=28.7
Q ss_pred CCCCCCccchhhccccCCceEE-ccCCCccChHHHHHHhc---CCCCCCCCCC
Q 027651 101 SMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICS 149 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~---~~~~~CPiCr 149 (220)
..+..|.||.+. . .+.. -.|.-.||..|+..-+. .+...||.|.
T Consensus 7 ~~~~~C~vC~~~----g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS----G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS----S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC----C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345679999864 1 2222 27889999999985443 2456787774
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.66 E-value=18 Score=26.92 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=25.5
Q ss_pred CCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 105 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 105 ~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
.|+.|.+.+......+.++ |..+|..|| +|-.|++.+.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVK--DKVYHLECF---------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCS--SCCCCTTTC---------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEEEEC--CcccccccC---------ccccCCCCCC
Confidence 6888888865433223333 788887664 6778888884
No 161
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=31.37 E-value=17 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=22.9
Q ss_pred eEEEccCCCCcceeeeeEeeecCCCCCCccccccC
Q 027651 180 VWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIA 214 (220)
Q Consensus 180 v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~~~ 214 (220)
..+.|..||.. ...| +-|++||.|+-+++-
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V~ 58 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKVL 58 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEECC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEee
Confidence 46889999973 4445 449999999998864
No 162
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=31.35 E-value=28 Score=17.65 Aligned_cols=16 Identities=19% Similarity=0.679 Sum_probs=12.4
Q ss_pred CCCCCCCCcCccchhH
Q 027651 142 KYCCPICSKSVIDMSR 157 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~ 157 (220)
.|.|+.|.+.+...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 3789999999886443
No 163
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=31.12 E-value=87 Score=21.93 Aligned_cols=41 Identities=24% Similarity=0.674 Sum_probs=21.0
Q ss_pred cCCccccccCCCCCCcccCCCCCccccCC-ccceeecCCcCccccc
Q 027651 45 FCDICKFYDDDIEKGQFHCDDCGICRIGG-RENYFHCKRCGSCYST 89 (220)
Q Consensus 45 fC~~C~l~dd~~~k~~yHC~~CgiCR~G~-~~~~fHC~~C~~C~s~ 89 (220)
+|..|+ |+++..---| .|-+|+.+. .+....|+.|..-+-.
T Consensus 12 ~c~~c~---~~~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~ 53 (77)
T 3shb_A 12 SCKHCK---DDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHI 53 (77)
T ss_dssp SCTTTT---TCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEET
T ss_pred cccccC---CCCCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCc
Confidence 455555 3333332233 344444443 3567888888765443
No 164
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=30.58 E-value=18 Score=24.75 Aligned_cols=11 Identities=27% Similarity=0.772 Sum_probs=5.5
Q ss_pred ccceecCCccc
Q 027651 40 NMGEYFCDICK 50 (220)
Q Consensus 40 ~~a~yfC~~C~ 50 (220)
..++|-|..|.
T Consensus 23 ~~akY~CPrC~ 33 (59)
T 1x4s_A 23 QPARYTCPRCN 33 (59)
T ss_dssp EEECEECTTTC
T ss_pred CCccccCcCCC
Confidence 44555555553
No 165
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.40 E-value=29 Score=23.97 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=8.2
Q ss_pred CCCcccCCCCCc
Q 027651 57 EKGQFHCDDCGI 68 (220)
Q Consensus 57 ~k~~yHC~~Cgi 68 (220)
......|++||-
T Consensus 35 ~~~~iRC~~CG~ 46 (63)
T 3h0g_L 35 AKEVIRCRECGH 46 (63)
T ss_dssp SSSCCCCSSSCC
T ss_pred CCCceECCCCCc
Confidence 346678888873
No 166
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.14 E-value=34 Score=18.32 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.2
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..+.|++|.+.+...+.
T Consensus 8 ~~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGT 24 (36)
T ss_dssp SSCBCTTTCCBCSSHHH
T ss_pred CCeecCcCCCCcCchHH
Confidence 35899999999986443
No 167
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.09 E-value=19 Score=24.18 Aligned_cols=40 Identities=25% Similarity=0.584 Sum_probs=28.1
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+... +.+.+ =|..+|..| ++|..|++++.+
T Consensus 9 ~~~C~~C~~~I~~~-~~v~a--~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFA-EKVSS--LGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTT-TEEEE--TTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECC-eEEEE--CCeEeeCCC---------CCCCCCCCccCC
Confidence 46799999987643 33333 377788665 579999999874
No 168
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.66 E-value=21 Score=18.03 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=12.0
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.+.|++|.+.+...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKH 17 (28)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 478999999988643
No 169
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=29.60 E-value=93 Score=21.20 Aligned_cols=35 Identities=20% Similarity=0.583 Sum_probs=20.0
Q ss_pred CCCCCCcccCCCCCccccCC-ccceeecCCcCccccc
Q 027651 54 DDIEKGQFHCDDCGICRIGG-RENYFHCKRCGSCYST 89 (220)
Q Consensus 54 d~~~k~~yHC~~CgiCR~G~-~~~~fHC~~C~~C~s~ 89 (220)
|+....-..| .|.+|+.+. .++..-|+.|..-+-.
T Consensus 10 ~~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 10 DDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHI 45 (70)
T ss_dssp TCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEG
T ss_pred CCCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceec
Confidence 4433333344 456666543 5678889988755443
No 170
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.24 E-value=30 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=27.1
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
....|+.|.+.+.. ..+ ..=|..+|..|| +|-.|++++.
T Consensus 14 ~~~~C~~C~~~I~~--~~v--~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 14 FAPRCARCSKTLTQ--GGV--TYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SSCCCTTTCCCCCS--CCE--ESSSSEECTTTC---------BCSSSCCBCT
T ss_pred cCCcCCCCCCEecC--cEE--EECCchhhhhhC---------CcccCCCcCC
Confidence 34679999988754 222 244788887664 7888998885
No 171
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=29.02 E-value=25 Score=23.89 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=22.9
Q ss_pred eEEEccCCCCcceeeeeEeeecCCCCCCccccccC
Q 027651 180 VWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIA 214 (220)
Q Consensus 180 v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~~~ 214 (220)
..+.|..||.. ...| +-|++||-|+-+++-
T Consensus 29 ~l~~c~~cG~~--~~pH---~vc~~CG~Y~gr~v~ 58 (60)
T 2zjr_Z 29 NLTECPQCHGK--KLSH---HICPNCGYYDGRQVL 58 (60)
T ss_dssp CCEECTTTCCE--ECTT---BCCTTTCBSSSBCSC
T ss_pred CceECCCCCCE--eCCc---eEcCCCCcCCCEEee
Confidence 46789999975 3334 469999999998863
No 172
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.96 E-value=28 Score=25.50 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=28.5
Q ss_pred CCCCccchhhccccCCceEEc-c--CC-CccChHHHHHHhcC---CCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVM-K--CG-HTMHCECYHEMIKR---DKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~L-p--CG-H~~H~~C~~~~l~~---~~~~CPiCrksi~ 153 (220)
..-| ||...-+ ...+.- . |. ..||..|+. |.. +.+.||.|++...
T Consensus 36 ~~yC-iC~~~~~---g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 36 PTYC-LCHQVSY---GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CBCS-TTCCBCC---SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CcEE-ECCCCCC---CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3457 8987632 122221 3 65 789999997 332 4689999987543
No 173
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=28.55 E-value=39 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.6
Q ss_pred CCCCCCCCcCccchhH
Q 027651 142 KYCCPICSKSVIDMSR 157 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~ 157 (220)
.|.|++|.+.+...+.
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 3789999999986443
No 174
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.04 E-value=24 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=22.1
Q ss_pred CCCCccchhhccccCCceEE-c-cCCCccChHHH
Q 027651 103 HHHCPICYEYLFDSLRNTTV-M-KCGHTMHCECY 134 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~-L-pCGH~~H~~C~ 134 (220)
...|++|..+..+. ...+. - .|.-.||..|+
T Consensus 8 ~~~C~~C~~p~~~~-~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 8 VYPCGICTNEVNDD-QDAILCEASCQKWFHRICT 40 (65)
T ss_dssp -CBCTTTCSBCCTT-SCEEEBTTTTCCEEEHHHH
T ss_pred cCcCccCCCccCCC-CCeEecccCccccCchhcc
Confidence 45799999986543 33333 3 78999999998
No 175
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=27.93 E-value=23 Score=26.54 Aligned_cols=31 Identities=29% Similarity=0.767 Sum_probs=25.0
Q ss_pred cCeeEEEccCCCCcceeeeeEeeecCCCCC-------Cccc
Q 027651 177 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYNT 210 (220)
Q Consensus 177 ~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~-------SyNT 210 (220)
+.+..++|.-||.. .||+--..|..|| +||=
T Consensus 12 ~~KtH~lCrRCG~~---sfH~qK~~CgkCGYpa~k~R~ynW 49 (97)
T 2zkr_2 12 RNKTHTLCRRCGSK---AYHLQKSTCGKCGYPAKRKRKYNW 49 (97)
T ss_dssp CCCCEECCTTTCSS---CEETTSCCBTTTCTTTSSCCCCSS
T ss_pred cCCCCCcCCCCCCc---cCcCccccCcccCCchHhccCcch
Confidence 44678999999986 4588888899998 7773
No 176
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=27.59 E-value=37 Score=22.58 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=8.5
Q ss_pred CCCCCCCCcCccch
Q 027651 142 KYCCPICSKSVIDM 155 (220)
Q Consensus 142 ~~~CPiCrksi~dm 155 (220)
.|.|++|.+++...
T Consensus 31 ~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 31 PFACDICGRKFARS 44 (88)
T ss_dssp CEECTTTCCEESSH
T ss_pred CccCCCCCCccCCH
Confidence 46666666666543
No 177
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.58 E-value=24 Score=17.70 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=12.0
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.+.|++|++++...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFS 17 (27)
T ss_dssp CEECSSSSCEESSHH
T ss_pred CccCCCcChhhCCHH
Confidence 478999999988643
No 178
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=27.46 E-value=34 Score=23.66 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=29.0
Q ss_pred CCCCCccchhhccccCCceEEc-c--CC-CccChHHHHHHhcC---CCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVM-K--CG-HTMHCECYHEMIKR---DKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~L-p--CG-H~~H~~C~~~~l~~---~~~~CPiCrksi~ 153 (220)
...-| ||...- . ...+.- . |. ..||..|+. |.. +.+.||.|.....
T Consensus 15 ~~~~C-~C~~~~-~--g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVS-Y--GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCS-C--SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCC-C--CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 34557 898752 2 122221 4 66 799999997 332 5689999986543
No 179
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.84 E-value=15 Score=23.90 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=26.4
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+.+ +. +..=|..+|..| ++|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~--~~--~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEG--RV--VNAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCS--CE--ECCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecc--eE--EEECccccccCc---------CEECCCCCCCCC
Confidence 4568888888752 22 234477788765 478889988874
No 180
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.40 E-value=24 Score=22.68 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=7.5
Q ss_pred CCCCCCCCcCccc
Q 027651 142 KYCCPICSKSVID 154 (220)
Q Consensus 142 ~~~CPiCrksi~d 154 (220)
.|.|++|.+.+..
T Consensus 14 ~~~C~~C~k~f~~ 26 (72)
T 1x6e_A 14 PYGCVECGKAFSR 26 (72)
T ss_dssp CEECSSSCCEESS
T ss_pred CccCCCCCCccCC
Confidence 3556666666554
No 181
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.32 E-value=14 Score=18.52 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=10.7
Q ss_pred CCCCCCCCcCccch
Q 027651 142 KYCCPICSKSVIDM 155 (220)
Q Consensus 142 ~~~CPiCrksi~dm 155 (220)
.|.|++|++.+...
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 37899999888753
No 182
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.33 E-value=31 Score=23.33 Aligned_cols=39 Identities=23% Similarity=0.673 Sum_probs=26.8
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
...|+.|.+.+.+ ..+.+ =|..+|..| ++|..|++++..
T Consensus 15 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD--RILRA--MGKAYHPGC---------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEEE--TTEEECTTT---------CBCSSSCCBCTT
T ss_pred CCccccCCCeecc--eeEEE--CCccccHHh---------cCcccCCCccCC
Confidence 4578899988753 23333 367788765 478899988863
No 183
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.20 E-value=26 Score=17.64 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=11.6
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.+.|++|.+.+...+
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 1rik_A 2 KFACPECPKRFMRSD 16 (29)
T ss_dssp CEECSSSSCEESCSH
T ss_pred CccCCCCCchhCCHH
Confidence 378999999987643
No 184
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.09 E-value=31 Score=17.15 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.7
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.+.|++|.+++...+
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 2m0f_A 2 PLKCRECGKQFTTSG 16 (29)
T ss_dssp CEECTTTSCEESCHH
T ss_pred CccCCCCCCccCChh
Confidence 378999999987543
No 185
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.85 E-value=29 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=15.4
Q ss_pred ccccccCcccceecCCccccccCCCCCCcccCCCCC
Q 027651 32 QVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCG 67 (220)
Q Consensus 32 ~~C~~Cg~~~a~yfC~~C~l~dd~~~k~~yHC~~Cg 67 (220)
..|..|++.|+. -+...||-.||
T Consensus 12 ~~C~~C~~~F~~-------------~~RrHHCR~CG 34 (73)
T 1vfy_A 12 DACMICSKKFSL-------------LNRKHHCRSCG 34 (73)
T ss_dssp SBCTTTCCBCBT-------------TBCCEECTTTC
T ss_pred CcccCCCCccCC-------------ccccccCCCCC
Confidence 467778887752 25667887776
No 186
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=25.81 E-value=37 Score=24.43 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=7.5
Q ss_pred ccceeecCCcCc
Q 027651 74 RENYFHCKRCGS 85 (220)
Q Consensus 74 ~~~~fHC~~C~~ 85 (220)
..-+|+|..|+.
T Consensus 58 ~~~~Y~C~~C~f 69 (89)
T 1v5n_A 58 TIWSYHCDECDF 69 (89)
T ss_dssp CSCEEECTTTCC
T ss_pred CCcEEEcCCCCC
Confidence 345677777764
No 187
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.75 E-value=63 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=7.6
Q ss_pred CCCCCCCCcCccc
Q 027651 142 KYCCPICSKSVID 154 (220)
Q Consensus 142 ~~~CPiCrksi~d 154 (220)
.|.|++|.+.+..
T Consensus 7 ~~~C~~C~k~f~~ 19 (78)
T 2d9h_A 7 GLQCEICGFTCRQ 19 (78)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCeeCC
Confidence 3566666666654
No 188
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=25.71 E-value=41 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=17.3
Q ss_pred CCCCCCCcCccchhHHHHHHHHHHHhc
Q 027651 143 YCCPICSKSVIDMSRTWKRIDEEIEAT 169 (220)
Q Consensus 143 ~~CPiCrksi~dm~~~~~~lD~~i~~~ 169 (220)
.+|..|+|.+++ .|+...+.+++.
T Consensus 4 VRCFTCGkvi~~---~we~y~~~~~~~ 27 (55)
T 1ef4_A 4 VRCLSCGKPVSA---YFNEYQRRVADG 27 (55)
T ss_dssp SSCSCTTSCCHH---HHHHHHHHHHHT
T ss_pred eecCCCCCChhH---HHHHHHHHHHcC
Confidence 589999999996 466555555553
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.69 E-value=35 Score=22.88 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=26.7
Q ss_pred CCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 103 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
...|+-|.+++.. ..+ ..=|..+|..| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~--~~v--~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG--RVL--EAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS--CCB--CCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC--eeE--EeCCCCCCCCc---------CEeCCCCCCCC
Confidence 4578889888654 222 24478888766 47888999887
No 190
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.65 E-value=21 Score=18.14 Aligned_cols=15 Identities=27% Similarity=0.888 Sum_probs=11.9
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.|.|++|++.+...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLA 17 (27)
T ss_dssp TEEETTTTEEESCHH
T ss_pred CcCCCCCCcccCCHH
Confidence 478999999988643
No 191
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.61 E-value=60 Score=22.47 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=13.7
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..|.|++|.+.+...+.
T Consensus 79 ~~~~C~~C~k~f~~~~~ 95 (115)
T 2dmi_A 79 KVLKCMYCGHSFESLQD 95 (115)
T ss_dssp SSCBCSSSCCBCSSHHH
T ss_pred cceECCCCCCccCCHHH
Confidence 45999999999986543
No 192
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=25.40 E-value=27 Score=27.12 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=19.5
Q ss_pred EccCCCCcceeeeeEeeecCCC--CCCcc
Q 027651 183 LCNDCNDTTEVYFHIIGQKCSH--CKSYN 209 (220)
Q Consensus 183 ~CnDC~~~s~~~~H~lg~kC~~--C~SyN 209 (220)
.|.+|+...++ |+-|.|++ |+.|.
T Consensus 36 ~C~~C~~~~~L---wlCL~CG~vgCgr~~ 61 (129)
T 2g45_A 36 KCSKCDMRENL---WLNLTDGSILCGRRY 61 (129)
T ss_dssp CCSSSSCCSSE---EEETTTCCEEECCBC
T ss_pred cCccccCcCce---EEeccCCccccCccc
Confidence 59999987654 89999997 87764
No 193
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=25.21 E-value=8.2 Score=26.64 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=30.2
Q ss_pred CCCCCCccchhhccccCCceEE-ccCCCccChHHHHHHhc--CCCCCCCCCCcC
Q 027651 101 SMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK--RDKYCCPICSKS 151 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~--~~~~~CPiCrks 151 (220)
.....| ||..+ .+ ....+. -.|.-.||..|+.--.. ...|.||.|+++
T Consensus 17 ~~~~~C-iC~~~-~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKP-FA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCC-CT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCc-CC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 445567 88875 22 222333 27899999999964321 146889888754
No 194
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.18 E-value=27 Score=23.51 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=11.1
Q ss_pred cccccCcccceecCCcccc
Q 027651 33 VCTNCGVNMGEYFCDICKF 51 (220)
Q Consensus 33 ~C~~Cg~~~a~yfC~~C~l 51 (220)
.|.-|+. .++|-|..|.+
T Consensus 14 ~C~vC~~-~~kY~CPrC~~ 31 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRV 31 (56)
T ss_dssp CCTTTCS-CCSEECTTTCC
T ss_pred ccCcCcC-CCeeeCCCCCC
Confidence 4556666 66666666654
No 195
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.18 E-value=21 Score=23.32 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCCccchhhccccCCceEEccCCCccC--hHHHHHHhcCCCCCCCCCCcCccc
Q 027651 104 HHCPICYEYLFDSLRNTTVMKCGHTMH--CECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 104 ~~CPICle~lf~s~~~v~~LpCGH~~H--~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
..|+-|.+++...+..+.++ |..+| ..| ++|-.|++++..
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~--~~~wH~~~~C---------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYN--NFSWHASTEC---------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCEEEET--TEEEETTTTT---------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceEEEEC--CCccCCCCCC---------EECCCCCCcCCC
Confidence 35888888876433344444 77888 766 478889988863
No 196
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=82 Score=17.96 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.5
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..|.|++|.+.+...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSH 27 (46)
T ss_dssp CSCCCSSSCCCCSSHHH
T ss_pred CCeECCCCCcccCCHHH
Confidence 35899999999986543
No 197
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.61 E-value=30 Score=21.96 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.3
Q ss_pred CCCCCCCCcCccchhHH
Q 027651 142 KYCCPICSKSVIDMSRT 158 (220)
Q Consensus 142 ~~~CPiCrksi~dm~~~ 158 (220)
.|.|++|.+.+...+..
T Consensus 37 ~~~C~~C~~~f~~~~~L 53 (70)
T 1x5w_A 37 PFKCNYCSFDTKQPSNL 53 (70)
T ss_dssp SEECSSSSCEESSHHHH
T ss_pred CEeCCCCCCccCCHHHH
Confidence 48999999999865443
No 198
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=24.59 E-value=25 Score=21.84 Aligned_cols=23 Identities=30% Similarity=0.762 Sum_probs=17.3
Q ss_pred CCCCcccccccccCcccceecCC
Q 027651 25 DTEQPVAQVCTNCGVNMGEYFCD 47 (220)
Q Consensus 25 ~~~q~~~~~C~~Cg~~~a~yfC~ 47 (220)
++...-...|..|.+.||+|.|-
T Consensus 9 dtysdcpgfcktckaefgkyicl 31 (41)
T 1bi6_H 9 DTYSDCPGFCKTCKAEFGKYICL 31 (41)
T ss_dssp CCCSSCCTTCSSEEEETTEEEEC
T ss_pred ccccCCchHHHHHHHHhCceEEE
Confidence 34445556788899999999874
No 199
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.28 E-value=53 Score=30.12 Aligned_cols=73 Identities=19% Similarity=0.405 Sum_probs=51.2
Q ss_pred eeecCCcCccccccccCcceeecCCCCCCCccchhhccccCCceEEc--cCCCccChHHHHHHhcC---------CCCCC
Q 027651 77 YFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIKR---------DKYCC 145 (220)
Q Consensus 77 ~fHC~~C~~C~s~~l~~~H~CiE~s~~~~CPICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l~~---------~~~~C 145 (220)
.|---.|..|...-+.....-.|...+.-|-||.+. .+-+.-= .|...|...|++.++.. ....|
T Consensus 67 l~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~C 142 (386)
T 2pv0_B 67 LFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVC 142 (386)
T ss_dssp SBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCC
T ss_pred CcCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceE
Confidence 333455666666656666777788889999999975 2212222 68899999999998842 35789
Q ss_pred CCCCcCcc
Q 027651 146 PICSKSVI 153 (220)
Q Consensus 146 PiCrksi~ 153 (220)
=+|.-.-.
T Consensus 143 f~C~p~p~ 150 (386)
T 2pv0_B 143 YLCLPSSR 150 (386)
T ss_dssp TTTSSCCE
T ss_pred EEcCCcch
Confidence 99987653
No 200
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.17 E-value=36 Score=18.99 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..+.|++|.+++...+
T Consensus 10 k~~~C~~C~k~f~~~~ 25 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKG 25 (42)
T ss_dssp CSBCCTTTTCCBSSHH
T ss_pred CCeeCCCccchhCCHH
Confidence 3589999999998644
No 201
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=23.85 E-value=23 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.501 Sum_probs=30.7
Q ss_pred CCCCccchhhccccCCceEE-ccCCCccChHHHHHHhc---CCCCCCCCCCcCc
Q 027651 103 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICSKSV 152 (220)
Q Consensus 103 ~~~CPICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~---~~~~~CPiCrksi 152 (220)
+..|.||... ++ +.. =.|.-.||..|+..-+. .+...||.|+...
T Consensus 4 ~~~C~~C~~~----g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4568888754 22 222 16889999999976654 2468899998754
No 202
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.76 E-value=31 Score=17.24 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=11.9
Q ss_pred CCCCCCCCcCccchh
Q 027651 142 KYCCPICSKSVIDMS 156 (220)
Q Consensus 142 ~~~CPiCrksi~dm~ 156 (220)
.+.|++|.+++...+
T Consensus 3 ~~~C~~C~~~f~~~~ 17 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPT 17 (30)
T ss_dssp CEECTTTCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 478999999988644
No 203
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.41 E-value=52 Score=23.28 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=20.5
Q ss_pred cceecCCccccccC-CCCCCcccCCCCCccccCC
Q 027651 41 MGEYFCDICKFYDD-DIEKGQFHCDDCGICRIGG 73 (220)
Q Consensus 41 ~a~yfC~~C~l~dd-~~~k~~yHC~~CgiCR~G~ 73 (220)
-++|.|+-|.--.- ...-.|+||..||.=-.||
T Consensus 24 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp HSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCS
T ss_pred ccCccCCCCCCceeEecCCCeEECCCCCCEEeCC
Confidence 35677776643211 2345788888888766665
No 204
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=23.30 E-value=63 Score=19.96 Aligned_cols=31 Identities=26% Similarity=0.807 Sum_probs=21.1
Q ss_pred ceeecCCcCcccccccc--CcceeecCCCCCCCc
Q 027651 76 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 107 (220)
Q Consensus 76 ~~fHC~~C~~C~s~~l~--~~H~CiE~s~~~~CP 107 (220)
+.|.|.. +.|++..+. +..-|..++.+.+|+
T Consensus 11 ~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 11 DQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 4788887 888887764 455566666666664
No 205
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.24 E-value=42 Score=21.66 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=6.5
Q ss_pred CCCCCCCcCccc
Q 027651 143 YCCPICSKSVID 154 (220)
Q Consensus 143 ~~CPiCrksi~d 154 (220)
|.|++|.+.+..
T Consensus 16 ~~C~~C~k~f~~ 27 (77)
T 2ct1_A 16 YECYICHARFTQ 27 (77)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCcCchhCC
Confidence 555555555553
No 206
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=23.21 E-value=48 Score=27.85 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=45.1
Q ss_pred ccCCccceeecCCcCccccccccCcceeecCC---CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCC----
Q 027651 70 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---- 142 (220)
Q Consensus 70 R~G~~~~~fHC~~C~~C~s~~l~~~H~CiE~s---~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~---- 142 (220)
+.|.+.....|.+|+.=-+.+.+...+=.... ....|.-|.-.+ ....+ =..=++.++....
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGI---------T~eey~~L~e~Qg~~~~ 136 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKL---------SSTEKKKMDEIAPPKGS 136 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCC---------CHHHHHHHHTTCCCTTC
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCC---------CHHHHHHHHHHcccCCC
Confidence 56888889999999996666554333332223 567888886543 11111 1112455665555
Q ss_pred -CCCCCCCcCcc
Q 027651 143 -YCCPICSKSVI 153 (220)
Q Consensus 143 -~~CPiCrksi~ 153 (220)
.+||||++...
T Consensus 137 ~G~C~ICg~~~~ 148 (200)
T 3gox_A 137 VFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCCEEE
T ss_pred CCcCcCCCCCCC
Confidence 78999998776
No 207
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.19 E-value=32 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.852 Sum_probs=15.0
Q ss_pred cceEEeCCCCCCCccc-ccccccCc
Q 027651 16 VKQVICSVCDTEQPVA-QVCTNCGV 39 (220)
Q Consensus 16 v~~i~C~~C~~~q~~~-~~C~~Cg~ 39 (220)
-...+|+.|+...+++ ..|..||.
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~ 36 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGY 36 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSS
T ss_pred hCCccCCCCCCcCCCCceecCCCCC
Confidence 3567788888765543 44666654
No 208
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.09 E-value=84 Score=20.44 Aligned_cols=23 Identities=35% Similarity=0.996 Sum_probs=14.7
Q ss_pred CCCCccccCCccceeecCCcCcccc
Q 027651 64 DDCGICRIGGRENYFHCKRCGSCYS 88 (220)
Q Consensus 64 ~~CgiCR~G~~~~~fHC~~C~~C~s 88 (220)
+.|.+|+.++ +..-|+.|..-+-
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~fH 28 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVYH 28 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEEC
T ss_pred CCCcCCCCCC--cEEEcCCCCcCEE
Confidence 3577777663 5777887775443
No 209
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.72 E-value=18 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=10.5
Q ss_pred CCCCCCCcCccch
Q 027651 143 YCCPICSKSVIDM 155 (220)
Q Consensus 143 ~~CPiCrksi~dm 155 (220)
|.|++|.+++...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 7899999988753
No 210
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.98 E-value=99 Score=22.67 Aligned_cols=66 Identities=29% Similarity=0.419 Sum_probs=39.6
Q ss_pred CCCCCCccchhhccccCCceEEccC--CCccChHHHHHHhcC----CCCCCCCCCcCccchh-HHHHHHHHHHHh
Q 027651 101 SMHHHCPICYEYLFDSLRNTTVMKC--GHTMHCECYHEMIKR----DKYCCPICSKSVIDMS-RTWKRIDEEIEA 168 (220)
Q Consensus 101 s~~~~CPICle~lf~s~~~v~~LpC--GH~~H~~C~~~~l~~----~~~~CPiCrksi~dm~-~~~~~lD~~i~~ 168 (220)
+....|.+|.|.|-++ .-+.-|- +|-|.-.|-...++. ...-||.=.|-.+.-+ .-|.-+..||+.
T Consensus 13 ~a~l~CtlC~erLEdt--HFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PWAFmqgEIat 85 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT--HFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIAT 85 (93)
T ss_dssp CCSCCCSSSCSCCSST--TSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBCCCCHHHHHH
T ss_pred CCeeEeecchhhhccC--ceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCchHHHhhHHHH
Confidence 3456799999998553 3444343 799999999999873 1233443333222111 237766777764
No 211
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.97 E-value=53 Score=18.23 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..+.|++|.+++...+
T Consensus 9 k~~~C~~C~k~f~~~~ 24 (42)
T 2yte_A 9 KPYSCAECKETFSDNN 24 (42)
T ss_dssp CSCBCTTTCCBCSSHH
T ss_pred CCeECCCCCCccCCHH
Confidence 3589999999998644
No 212
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.76 E-value=17 Score=25.20 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=20.8
Q ss_pred eEEEccCCCCcceeeeeEeeecCCCCC
Q 027651 180 VWILCNDCNDTTEVYFHIIGQKCSHCK 206 (220)
Q Consensus 180 v~I~CnDC~~~s~~~~H~lg~kC~~C~ 206 (220)
..|+|.-||.+ .||+--..|..||
T Consensus 16 tH~lCrRCG~~---syH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRV---SYNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSB---CEETTTTEETTTC
T ss_pred ceeeecccCcc---hhccccccccccC
Confidence 78999999985 5788888999998
No 213
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.75 E-value=29 Score=22.40 Aligned_cols=28 Identities=32% Similarity=0.915 Sum_probs=16.7
Q ss_pred cceecCCccccc-cC---CC-----CCCcccCCCCCc
Q 027651 41 MGEYFCDICKFY-DD---DI-----EKGQFHCDDCGI 68 (220)
Q Consensus 41 ~a~yfC~~C~l~-dd---~~-----~k~~yHC~~Cgi 68 (220)
|.+|-|.+|-+. |. |+ --.-|.|+.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 678888899664 42 11 112367777764
No 214
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=22.57 E-value=53 Score=21.46 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=8.7
Q ss_pred CCCCCCCCcCccch
Q 027651 142 KYCCPICSKSVIDM 155 (220)
Q Consensus 142 ~~~CPiCrksi~dm 155 (220)
.+.|++|.+.+...
T Consensus 34 ~~~C~~C~~~f~~~ 47 (90)
T 1a1h_A 34 PFQCRICMRNFSRS 47 (90)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 46677776666643
No 215
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.28 E-value=48 Score=18.58 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.|++|.+++...+
T Consensus 10 k~~~C~~C~k~f~~~~ 25 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQ 25 (42)
T ss_dssp CCBCCSSSCCCBSSHH
T ss_pred CCEECCCCCCccCCHH
Confidence 3589999999998643
No 216
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=21.91 E-value=51 Score=19.57 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=17.3
Q ss_pred ceeecCCcCcccccccc--CcceeecCCCCCCCc
Q 027651 76 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 107 (220)
Q Consensus 76 ~~fHC~~C~~C~s~~l~--~~H~CiE~s~~~~CP 107 (220)
+.|.|.. |.|++.+.. +.--|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4567765 677776543 334455555555554
No 217
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.78 E-value=61 Score=18.17 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=12.9
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..+.|++|.+.+...+
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (44)
T 2en7_A 11 KPYVCNECGKAFRSKS 26 (44)
T ss_dssp SSSCCTTTCCCCSSHH
T ss_pred cCeECCCCCCccCCHH
Confidence 3589999999998643
No 218
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.76 E-value=57 Score=23.25 Aligned_cols=45 Identities=18% Similarity=0.450 Sum_probs=31.7
Q ss_pred cCCCccccccccceEEeCCCCCC-CcccccccccCcccceecCCccccccC
Q 027651 5 PYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGEYFCDICKFYDD 54 (220)
Q Consensus 5 ~~~~H~l~R~~v~~i~C~~C~~~-q~~~~~C~~Cg~~~a~yfC~~C~l~dd 54 (220)
+....+++..+++...|..|.+. +.++-.| .||. .||++=++-|+
T Consensus 12 ~~~~~~~~~~k~~~~RC~~C~kkvgL~~f~C-rCg~----~FCs~HRy~e~ 57 (74)
T 1wfp_A 12 DSAAAPLDPPKSTATRCLSCNKKVGVTGFKC-RCGS----TFCGTHRYPES 57 (74)
T ss_dssp CCCCCCSCCTTCCCCBCSSSCCBCTTTCEEC-TTSC----EECTTTCSTTT
T ss_pred cccccccccCcccCccchhhcCcccccceEe-ccCC----EeccccCCCcC
Confidence 34456777788888889999764 6667778 6765 56777666544
No 219
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.68 E-value=70 Score=18.33 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=13.3
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..|.|++|.+.+...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNSS 27 (46)
T ss_dssp CSSSBTTTTBCCSSHHH
T ss_pred CCcCCCCCCchhCCHHH
Confidence 35899999999986543
No 220
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.44 E-value=47 Score=22.40 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCcc
Q 027651 102 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 153 (220)
Q Consensus 102 ~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 153 (220)
....|+.|.+.+.. ..+ ..=|..+|..|| +|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VFV--KLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS--SCE--ECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCCccccCCCCccC--cEE--EECcceeCcCcC---------eeCCCCCCCC
Confidence 35679999998764 223 334788998775 6888998875
No 221
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.28 E-value=60 Score=18.52 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=13.5
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..+.|++|.+++...+.
T Consensus 11 ~~~~C~~C~k~f~~~~~ 27 (46)
T 2eoq_A 11 KPFKCDICGKSFCGRSR 27 (46)
T ss_dssp CSCCCSSSCCCCSSHHH
T ss_pred CCcCCCcCCchhCCHHH
Confidence 35899999999986543
No 222
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.97 E-value=48 Score=20.50 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=4.4
Q ss_pred cceeecCCcC
Q 027651 75 ENYFHCKRCG 84 (220)
Q Consensus 75 ~~~fHC~~C~ 84 (220)
..-+.|..|+
T Consensus 26 ~qg~~C~~C~ 35 (50)
T 1ptq_A 26 KQGLKCEDCG 35 (50)
T ss_dssp SCEEEETTTC
T ss_pred CccCEeCCCC
Confidence 3344444444
No 223
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.95 E-value=60 Score=18.50 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.4
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (47)
T 2epx_A 11 KPYECIECGKAFIQNTS 27 (47)
T ss_dssp CSBCCSSSCCCBSSHHH
T ss_pred CCEECCccCchhCChHH
Confidence 35899999999986443
No 224
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.95 E-value=32 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.822 Sum_probs=8.0
Q ss_pred cceeecCCcCccccc
Q 027651 75 ENYFHCKRCGSCYST 89 (220)
Q Consensus 75 ~~~fHC~~C~~C~s~ 89 (220)
+.-|.|..||--++.
T Consensus 30 ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 30 YRPRSCPECGKCFRD 44 (60)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CcCeECCCCCCCcCC
Confidence 445556666554443
No 225
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=20.94 E-value=33 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.716 Sum_probs=19.1
Q ss_pred CCCCcccccccc--cCc--ccc----eecCCcccc
Q 027651 25 DTEQPVAQVCTN--CGV--NMG----EYFCDICKF 51 (220)
Q Consensus 25 ~~~q~~~~~C~~--Cg~--~~a----~yfC~~C~l 51 (220)
++++.....|.+ ||. -|| |+||.+|.+
T Consensus 112 ~~~~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 112 GKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp SCEECCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred CeEEECcCcCCCccCCCceEecccCCCcccCCCce
Confidence 456666788998 976 666 677777754
No 226
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=20.72 E-value=34 Score=34.14 Aligned_cols=68 Identities=7% Similarity=0.137 Sum_probs=31.1
Q ss_pred EccCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHHHHHHHHHHhcCCChhhhcCeeEEEccCCCCcceeeeeEeeec
Q 027651 122 VMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQK 201 (220)
Q Consensus 122 ~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~~H~lg~k 201 (220)
+|...++++..++..|-. ..||+|+....- . .++ ...++|+ . .-.|.+|+...++ |+-|.
T Consensus 173 i~~~~~~~~~~~~~~w~~---~~~~~c~h~~~~-~----~~~---~~~~~~~--~----~~~C~~c~~~~~l---w~CL~ 232 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWDG---EVRQVSKHAFSL-K----QLD---NPARIPP--C----GWKCSKCDMRENL---WLNLT 232 (854)
T ss_dssp HTC-------------------CCCBCTTTTTC-C----CCS---SCCCCCS--S----CCCCSSSCCCSSE---EEETT
T ss_pred HHhcCCHHHHHHHHhhcC---ccCCCCcCcccc-c----ccc---ccccCCC--C----CCcCcCcCCcCce---EEEec
Confidence 456779999999999953 469999877531 0 000 0122332 1 2459999987755 89899
Q ss_pred CCC--CCCcc
Q 027651 202 CSH--CKSYN 209 (220)
Q Consensus 202 C~~--C~SyN 209 (220)
|++ |+.|.
T Consensus 233 Cg~vgC~r~~ 242 (854)
T 3ihp_A 233 DGSILCGRRY 242 (854)
T ss_dssp TCCEEECCBC
T ss_pred CCCccccccc
Confidence 986 77553
No 227
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.71 E-value=49 Score=21.97 Aligned_cols=12 Identities=33% Similarity=1.093 Sum_probs=9.4
Q ss_pred cceecCCccccc
Q 027651 41 MGEYFCDICKFY 52 (220)
Q Consensus 41 ~a~yfC~~C~l~ 52 (220)
|.+|-|.+|.+.
T Consensus 1 m~~y~C~vCGyv 12 (54)
T 4rxn_A 1 MKKYTCTVCGYI 12 (54)
T ss_dssp CCCEEETTTCCE
T ss_pred CCceECCCCCeE
Confidence 578889999764
No 228
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=64 Score=18.41 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.|++|.+.+...+
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2yti_A 11 KPYKCNECGKVFTQNS 26 (46)
T ss_dssp CTTCCSSSCCCCSSHH
T ss_pred cCeECCCCCcccCChh
Confidence 4589999999998643
No 229
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.60 E-value=62 Score=18.45 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.1
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.|++|.+++...+
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2eq2_A 11 KPYQCNECGKAFSQTS 26 (46)
T ss_dssp CSSSCCSSCCCCSSHH
T ss_pred CCeECCCCCcccCCHH
Confidence 4589999999998644
No 230
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.94 E-value=21 Score=18.10 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.1
Q ss_pred CCCCCCCCcCccch
Q 027651 142 KYCCPICSKSVIDM 155 (220)
Q Consensus 142 ~~~CPiCrksi~dm 155 (220)
.+.|++|.+++...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 47899999988753
No 231
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.50 E-value=65 Score=18.29 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=12.9
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..+.|++|.+++...+
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ytr_A 11 KPYKCNECGKAFSQTS 26 (46)
T ss_dssp CTTCCTTTCCCCSSHH
T ss_pred cCcCCCCCCCccCCHH
Confidence 3589999999998643
No 232
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.49 E-value=61 Score=18.48 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.|++|.+.+...+
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2enf_A 11 KPYKCNECGKVFTQNS 26 (46)
T ss_dssp CSCBCSSSCCBCSSHH
T ss_pred cCeECCCCCcccCCHH
Confidence 3589999999998643
No 233
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=20.30 E-value=27 Score=25.06 Aligned_cols=13 Identities=38% Similarity=1.106 Sum_probs=10.0
Q ss_pred cceecCCcccccc
Q 027651 41 MGEYFCDICKFYD 53 (220)
Q Consensus 41 ~a~yfC~~C~l~d 53 (220)
|.+|||+-|+.|-
T Consensus 1 mPkYyCdYCd~~l 13 (77)
T 3cw1_L 1 MPKFYCDYCDTYL 13 (77)
T ss_pred CCCcccccCCcee
Confidence 5688888887773
No 234
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.29 E-value=83 Score=23.08 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=15.6
Q ss_pred CCccChHHHHHHhcCCCCCCCCCCcCccc
Q 027651 126 GHTMHCECYHEMIKRDKYCCPICSKSVID 154 (220)
Q Consensus 126 GH~~H~~C~~~~l~~~~~~CPiCrksi~d 154 (220)
|-.+...|+.+.+. ..-+|-.|++.|..
T Consensus 54 g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 54 GMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp TEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 44556666665553 12356666666653
No 235
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.18 E-value=56 Score=18.79 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.|++|.+.+...+
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSS 26 (46)
T ss_dssp CSCBCSSSCCBCSSHH
T ss_pred cccCCCCCCcccCcHH
Confidence 3589999999998643
No 236
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=40 Score=18.01 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=12.6
Q ss_pred CCCCCCCCCcCccchh
Q 027651 141 DKYCCPICSKSVIDMS 156 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~ 156 (220)
..|.|++|.+.+...+
T Consensus 8 k~~~C~~C~k~f~~~~ 23 (36)
T 2elt_A 8 KPYKCPQCSYASAIKA 23 (36)
T ss_dssp CSEECSSSSCEESSHH
T ss_pred CCCCCCCCCcccCCHH
Confidence 3589999999988643
No 237
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=20.09 E-value=63 Score=18.49 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=13.6
Q ss_pred CCCCCCCCCcCccchhH
Q 027651 141 DKYCCPICSKSVIDMSR 157 (220)
Q Consensus 141 ~~~~CPiCrksi~dm~~ 157 (220)
..+.|++|.+.+...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2emk_A 11 KPYECKECGKAFSQTTH 27 (46)
T ss_dssp CSCBCSSSCCBCSCHHH
T ss_pred CceECCCCCchhCCHHH
Confidence 35899999999986543
Done!