BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027652
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1
Length = 194
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 135 INVDTSNNNKNDAAPLQLPQDPMAAAPTFSCPICMGPLSEAT-------STKCGHIFCKD 187
+ T + K+D A P + T SCPICM SE ST+CGH+FC
Sbjct: 112 VTTHTPRSTKDDGATGPRP------SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 165
Query: 188 CIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216
C++ ++ CP CR+K+ + +Y+
Sbjct: 166 CLRDSLKNANTCPTCRKKINHKRYHPIYI 194
>sp|P78317|RNF4_HUMAN E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1
Length = 190
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 162 TFSCPICMGPLSEAT-------STKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214
T SCPICM SE ST+CGH+FC C++ ++ CP CR+K+ + +
Sbjct: 129 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 188
Query: 215 YL 216
Y+
Sbjct: 189 YI 190
>sp|O88846|RNF4_RAT E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1
SV=1
Length = 194
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 162 TFSCPICMGPLSEAT-------STKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214
T SCPICM SE ST+CGH+FC C++ ++ CP CR+K+ + +
Sbjct: 133 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 192
Query: 215 YL 216
Y+
Sbjct: 193 YI 194
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214
F C +C G L T C HIFCK CI +A Q CP CR++V +R + V
Sbjct: 18 FLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKV 206
F CPIC + EA TKCGH FC CI ++ +CP C V
Sbjct: 136 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVV 179
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 147 AAPLQLPQDPMAAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA-AQGKCPNCRQK 205
A L+ +DP +F C +C+ L + T+CGH+FC+ CI ++ + CP CR
Sbjct: 19 ARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAY 78
Query: 206 VGKRGI 211
+ G+
Sbjct: 79 LPSEGV 84
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKV 206
F CPIC + EA TKCGH FC CI ++ +CP C V
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVV 177
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2
Length = 1001
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYL 216
+CP C +A TKC H+FC +C++G A Q KCP C G RVY+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1000
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1
SV=1
Length = 1002
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYL 216
+CP C +A TKC H+FC +C++G A Q KCP C G RVY+
Sbjct: 947 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1001
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKV 206
T CPIC L +T CGH +C +C+ + CP CRQK+
Sbjct: 82 TLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 84 RNHSQVVDQLRHVLTD---AGGLLDSLQEVTDLAILYVKQRRNRPDEATPDNCCI----- 135
R ++ VD+ R VLT G + QEVTD A +PD TP I
Sbjct: 63 RRQNEWVDKSRLVLTKPPKEGETNGTDQEVTDTA--------EQPDSKTPQKRKIEEPEP 114
Query: 136 -----NVDTSNNNKNDAAPLQLPQDPMAAAPTFSCPICMGPLSEATSTKCGHIFCKDCIK 190
V+ + +KN A+ L D A +CP+C+ + CGH FC+ CI
Sbjct: 115 EPKKAKVEEKDASKN-ASSLGAAGD---FAEELTCPLCVELFKDPVMVACGHNFCRSCID 170
Query: 191 GAIAAQGK--CPNCRQKVGKR 209
A Q CP CR+ + R
Sbjct: 171 KAWEGQSSFACPECRESITDR 191
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYL 216
+CP C +A TKC H+FC +C++G A Q KCP C G R+Y+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4
Length = 1001
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYL 216
+CP C +A TKC H+FC +C++G A Q KCP C G R+Y+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 154 QDPMAAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCR 203
+D + SC IC+G + KCGH FCK CI + A KCP C+
Sbjct: 1228 KDTLNDNQILSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSKCPICK 1277
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1
Length = 1001
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYL 216
+CP C +A TKC H+FC +C++G A Q KCP C G R+Y+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis GN=RNF125
PE=2 SV=3
Length = 232
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 135 INVDTSNNNKNDAAPLQLPQ--DPMAAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGA 192
++ D+ + A P L + DP +F C +C+ L + T+CGH+FC+ CI +
Sbjct: 5 LSSDSGKSAPPSATPRALERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATS 64
Query: 193 IA-AQGKCPNCRQKVGKRGI 211
+ + CP CR + G+
Sbjct: 65 LKNNKWTCPYCRAYLPSEGV 84
>sp|Q6MFY8|TRI40_RAT Tripartite motif-containing protein 40 OS=Rattus norvegicus
GN=Trim40 PE=3 SV=1
Length = 247
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 165 CPICMGPLSEATSTKCGHIFCKDCI-----KGAIAAQGKCPNCRQ 204
CPIC+ PL EA ST C H+FC+ C+ K +++ CP CR+
Sbjct: 12 CPICLDPLKEAVSTDCRHLFCRMCLIRHMDKASVSGVLSCPVCRK 56
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGK-CPNCRQKV 206
+CPIC+ P E S +CGH FC++CI G CP CRQ+
Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRF 58
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214
F C +C G L C HIFCK CI +A Q CP CR++V R + V
Sbjct: 18 FLCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQKTCPCCRKEVRHRKMVHV 69
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 138 DTSNNNKNDAAPLQLPQDPMAAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG 197
D +++ + A P LP P A+ +C +C+ P+ + + +CGH+FC C+ + +
Sbjct: 221 DQTSDVIDLADPKVLPYLPEASR---TCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQ 277
Query: 198 KCPNCRQKV 206
+CP CR K+
Sbjct: 278 ECPLCRAKM 286
>sp|Q3UWA4|TRI40_MOUSE Tripartite motif-containing protein 40 OS=Mus musculus GN=Trim40
PE=2 SV=1
Length = 246
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 165 CPICMGPLSEATSTKCGHIFCKDCI-----KGAIAAQGKCPNCRQ 204
CPIC+ PL EA ST C H+FC+ C+ K +++ CP CR+
Sbjct: 12 CPICLDPLKEAVSTDCRHLFCRMCLTQHMDKASVSGILSCPVCRK 56
>sp|Q28DL4|TRAF6_XENTR TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6
PE=2 SV=1
Length = 558
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 128 ATPDNCCINVDTSNNNKNDAAPLQLPQ--------------DPMAAAPTFSCPICMGPLS 173
A CC+N + + +P PQ DP + + CPIC+ L
Sbjct: 22 AMASACCVNTKEDGESPSAGSPSGTPQSLVLEDVQGYDVEFDPPLES-KYECPICLMALR 80
Query: 174 EATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKRGIF 212
EA T CGH FCK CI +I G KCP + + + +F
Sbjct: 81 EAVQTPCGHRFCKACILKSIRDAGHKCPVDNESLMENQLF 120
>sp|Q2KHN1|RN151_HUMAN RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1
Length = 245
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214
F C +C G L C HIFCK CI +A Q CP CR++V ++ + +
Sbjct: 18 FVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHM 69
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 150 LQLPQDPMAAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQGK-CPNCRQK-V 206
L++ P + CPIC+ L +TK C H FC DCI A+ + K CP CR+K V
Sbjct: 36 LEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 95
Query: 207 GKRGI 211
KR +
Sbjct: 96 SKRSL 100
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKRGI 211
+C IC+ P+ E S +CGH FCK+CI G CP CRQ+ R +
Sbjct: 19 TCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNL 67
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGK--CPNCRQKVGKRGI 211
+F C +C+ L + T+CGH+FC+ CI +I K CP CR + G+
Sbjct: 34 SFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYLPSEGV 85
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 150 LQLPQDPMAAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQGK-CPNCRQK-V 206
L++ P + CPIC+ L +TK C H FC DCI A+ + K CP CR+K V
Sbjct: 36 LEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 95
Query: 207 GKRGI 211
KR +
Sbjct: 96 SKRSL 100
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 156 PMAAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQGK-CPNCRQK-VGKRGI 211
P + CPIC+ L + +TK C H FC DCI A+ + K CP CR+K V KR +
Sbjct: 37 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSL 95
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 150 LQLPQDPMAAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQGK-CPNCRQK-V 206
L++ P + CPIC+ L +TK C H FC DCI A+ + K CP CR+K V
Sbjct: 36 LEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 95
Query: 207 GKRGI 211
KR +
Sbjct: 96 SKRSL 100
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 150 LQLPQDPMAAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQGK-CPNCRQK-V 206
L++ P + CPIC+ L +TK C H FC DCI A+ + K CP CR+K V
Sbjct: 36 LEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 95
Query: 207 GKRGI 211
KR +
Sbjct: 96 SKRSL 100
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGK---CPNCR 203
A SC IC+ P E +T CGH FC C+ A QG CP CR
Sbjct: 8 AEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCR 54
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ ++ KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 150 LQLPQDPMAAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQGK-CPNCRQK-V 206
L++ P + CPIC+ L +TK C H FC DCI A+ + K CP CR+K V
Sbjct: 36 LEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 95
Query: 207 GKRGI 211
KR +
Sbjct: 96 SKRSL 100
>sp|Q3UWZ0|TRI75_MOUSE Tripartite motif-containing protein 75 OS=Mus musculus GN=Trim75
PE=2 SV=1
Length = 467
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 165 CPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
CPIC+ L++ + +CGH FC+ CIK A Q CP CR + R +
Sbjct: 16 CPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQATSSCPVCRHQCQHRNL 65
>sp|Q8K243|TRI68_MOUSE E3 ubiquitin-protein ligase TRIM68 OS=Mus musculus GN=Trim68 PE=2
SV=1
Length = 485
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGK-------CPNCRQKVGKRG 210
A +CPICM L E S CGH FC C+ G G+ CP CR V R
Sbjct: 9 AIVEEVNCPICMTFLREPVSISCGHTFCHSCLSGLWKLPGESQNLSYTCPLCRAPVKPRK 68
Query: 211 I 211
+
Sbjct: 69 L 69
>sp|Q8N5U6|RNF10_HUMAN RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2
Length = 811
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ----GKCPNCRQKVGKRGI 211
SCPIC+ P + A T+CGHIFC CI ++ KCP C V K+ +
Sbjct: 224 SCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDL 275
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1
PE=1 SV=2
Length = 1044
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYL 216
T +CP C +A +KC H+FC DC++ Q KCP C G R+YL
Sbjct: 988 TLTCPSCKVKRKDAVLSKCFHVFCYDCLRTRYETRQRKCPKCNCAFGANDYHRLYL 1043
>sp|Q08E13|RNF10_BOVIN RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1
Length = 810
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ----GKCPNCRQKVGKRGI 211
SCPIC+ P + A T+CGHIFC CI ++ KCP C V K+ +
Sbjct: 224 SCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDL 275
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ + KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ + KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 165 CPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQK 205
C +C+ T+T CGH+FC +CI +++ +CP CR+K
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 313
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ----GKCPNCRQKVGKRGI 211
SCPIC+ P + A T+CGHIFC CI ++ KCP C V K+ +
Sbjct: 224 SCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDL 275
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ + KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ----GKCPNCRQKVGKRGI 211
SCPIC+ P + A T+CGHIFC CI ++ KCP C V K+ +
Sbjct: 224 SCPICLYPPTAAKITRCGHIFCWACILHYLSLSERTWSKCPICYSSVHKKDL 275
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ + KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ + KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAI---AAQGKCPNCRQKVGKRGIF 212
+ C IC+ + T CGHIFC CI A+ AA KCP CR+KV +
Sbjct: 204 YKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVI 256
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 165 CPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKV 206
C +C+ T+T CGH+FC +CI +++ +CP CR+K
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKF 314
>sp|B5DF45|TRAF6_RAT TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2
SV=1
Length = 530
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCP 200
+ CPIC+ L EA T CGH FCK CI +I G KCP
Sbjct: 68 YECPICLMALREAVQTPCGHRFCKACITKSIRDAGHKCP 106
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211
A CPIC+ + E STKC HIFCK C+ + + +CP C+ + KR +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSL 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,738,677
Number of Sequences: 539616
Number of extensions: 3542325
Number of successful extensions: 10603
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 412
Number of HSP's that attempted gapping in prelim test: 9961
Number of HSP's gapped (non-prelim): 947
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)