Query 027652
Match_columns 220
No_of_seqs 253 out of 1972
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0320 Predicted E3 ubiquitin 99.5 1.3E-14 2.8E-19 118.4 3.3 58 159-216 128-187 (187)
2 PLN03208 E3 ubiquitin-protein 99.3 2.2E-12 4.8E-17 107.4 5.4 60 159-218 15-90 (193)
3 KOG0823 Predicted E3 ubiquitin 99.3 4.5E-12 9.8E-17 107.5 5.7 58 159-216 44-104 (230)
4 smart00504 Ubox Modified RING 99.2 1.3E-11 2.9E-16 84.6 4.0 53 163-215 2-54 (63)
5 KOG0317 Predicted E3 ubiquitin 99.2 2.2E-11 4.8E-16 106.2 4.2 57 159-215 236-292 (293)
6 PF15227 zf-C3HC4_4: zinc fing 99.2 1.9E-11 4.1E-16 78.2 2.6 38 165-202 1-42 (42)
7 KOG2164 Predicted E3 ubiquitin 99.1 3.8E-11 8.2E-16 111.6 4.5 97 121-218 139-247 (513)
8 PF13923 zf-C3HC4_2: Zinc fing 99.1 6.1E-11 1.3E-15 74.4 2.5 38 165-202 1-39 (39)
9 PF13920 zf-C3HC4_3: Zinc fing 99.1 9.7E-11 2.1E-15 77.3 2.9 46 162-207 2-48 (50)
10 PF13639 zf-RING_2: Ring finge 99.0 1.3E-10 2.9E-15 74.6 1.6 40 164-203 2-44 (44)
11 TIGR00599 rad18 DNA repair pro 99.0 3.9E-10 8.5E-15 103.6 3.7 58 158-215 22-79 (397)
12 PHA02929 N1R/p28-like protein; 98.9 1.2E-09 2.5E-14 94.3 3.9 47 161-207 173-227 (238)
13 PF04564 U-box: U-box domain; 98.9 8.9E-10 1.9E-14 78.4 2.6 55 161-215 3-58 (73)
14 KOG0287 Postreplication repair 98.9 3.2E-10 6.8E-15 101.0 -0.1 58 159-216 20-77 (442)
15 KOG0978 E3 ubiquitin ligase in 98.9 6.2E-10 1.3E-14 107.7 1.4 57 160-216 641-698 (698)
16 PF00097 zf-C3HC4: Zinc finger 98.8 2.1E-09 4.5E-14 67.7 2.6 38 165-202 1-41 (41)
17 cd00162 RING RING-finger (Real 98.8 5.2E-09 1.1E-13 65.7 3.4 43 164-206 1-45 (45)
18 COG5574 PEX10 RING-finger-cont 98.8 3.3E-09 7.2E-14 91.7 2.3 52 160-211 213-266 (271)
19 smart00184 RING Ring finger. E 98.7 2.2E-08 4.7E-13 60.6 3.3 38 165-202 1-39 (39)
20 COG5432 RAD18 RING-finger-cont 98.7 8E-09 1.7E-13 90.5 1.5 52 160-211 23-74 (391)
21 PF14634 zf-RING_5: zinc-RING 98.6 1.8E-08 3.8E-13 64.8 2.6 41 164-204 1-44 (44)
22 PF13445 zf-RING_UBOX: RING-ty 98.6 1.5E-08 3.2E-13 65.1 1.8 35 165-200 1-43 (43)
23 PHA02926 zinc finger-like prot 98.6 2.9E-08 6.3E-13 84.2 2.9 48 160-207 168-230 (242)
24 PF12678 zf-rbx1: RING-H2 zinc 98.5 7.5E-08 1.6E-12 68.6 3.2 40 164-203 21-73 (73)
25 PF14835 zf-RING_6: zf-RING of 98.4 4.4E-08 9.6E-13 67.7 0.4 51 161-213 6-57 (65)
26 COG5243 HRD1 HRD ubiquitin lig 98.4 1.4E-07 3.1E-12 85.1 3.0 48 160-207 285-345 (491)
27 KOG0802 E3 ubiquitin ligase [P 98.4 1.6E-07 3.4E-12 90.0 2.6 58 160-217 289-351 (543)
28 TIGR00570 cdk7 CDK-activating 98.3 3.6E-07 7.9E-12 81.4 3.8 57 162-218 3-65 (309)
29 KOG4628 Predicted E3 ubiquitin 98.3 2.6E-07 5.7E-12 83.5 2.7 46 163-208 230-279 (348)
30 KOG2177 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 79.2 1.2 46 159-204 10-55 (386)
31 KOG4172 Predicted E3 ubiquitin 98.3 1.2E-07 2.6E-12 63.4 -0.8 51 163-215 8-60 (62)
32 KOG0824 Predicted E3 ubiquitin 98.2 6.9E-07 1.5E-11 78.7 2.0 51 161-211 6-57 (324)
33 COG5540 RING-finger-containing 98.2 1E-06 2.2E-11 77.8 3.1 47 162-208 323-373 (374)
34 KOG4265 Predicted E3 ubiquitin 98.0 3.9E-06 8.4E-11 75.6 3.4 55 160-216 288-343 (349)
35 KOG0311 Predicted E3 ubiquitin 97.9 8.7E-07 1.9E-11 79.6 -2.1 50 159-208 40-91 (381)
36 KOG4159 Predicted E3 ubiquitin 97.9 4.8E-06 1E-10 76.9 2.1 50 159-208 81-130 (398)
37 KOG2879 Predicted E3 ubiquitin 97.9 1.4E-05 3.1E-10 69.8 4.5 50 158-207 235-287 (298)
38 KOG3039 Uncharacterized conser 97.8 1.3E-05 2.7E-10 69.2 3.4 60 160-219 219-282 (303)
39 PF12861 zf-Apc11: Anaphase-pr 97.8 1.6E-05 3.6E-10 58.1 3.0 31 179-209 51-84 (85)
40 KOG2660 Locus-specific chromos 97.8 7.4E-06 1.6E-10 73.1 0.9 50 160-209 13-63 (331)
41 COG5152 Uncharacterized conser 97.7 1.3E-05 2.9E-10 67.0 1.8 48 160-207 194-241 (259)
42 PF11789 zf-Nse: Zinc-finger o 97.6 3.1E-05 6.6E-10 52.6 1.3 42 160-201 9-53 (57)
43 KOG0826 Predicted E3 ubiquitin 97.5 3.2E-05 7E-10 69.0 1.4 58 160-217 298-356 (357)
44 KOG0297 TNF receptor-associate 97.5 4.3E-05 9.3E-10 70.7 2.2 53 159-211 18-71 (391)
45 KOG1813 Predicted E3 ubiquitin 97.5 3.3E-05 7.2E-10 68.1 0.6 47 161-207 240-286 (313)
46 PF04641 Rtf2: Rtf2 RING-finge 97.4 0.00018 4E-09 62.9 4.8 60 158-218 109-172 (260)
47 KOG4692 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 66.3 2.9 51 158-208 418-468 (489)
48 KOG4275 Predicted E3 ubiquitin 97.3 1.9E-05 4.2E-10 69.5 -2.3 42 162-207 300-342 (350)
49 KOG1645 RING-finger-containing 97.2 9.8E-05 2.1E-09 67.7 0.9 54 162-215 4-64 (463)
50 PF11793 FANCL_C: FANCL C-term 97.1 0.00015 3.2E-09 51.2 0.2 47 162-208 2-67 (70)
51 KOG1039 Predicted E3 ubiquitin 97.0 0.00034 7.4E-09 63.6 2.4 48 160-207 159-221 (344)
52 KOG0804 Cytoplasmic Zn-finger 97.0 0.00045 9.8E-09 64.1 2.8 47 159-207 172-222 (493)
53 KOG1785 Tyrosine kinase negati 97.0 0.0003 6.6E-09 64.5 1.7 50 163-212 370-421 (563)
54 KOG0828 Predicted E3 ubiquitin 97.0 0.00043 9.4E-09 65.0 2.4 48 160-207 569-634 (636)
55 KOG1734 Predicted RING-contain 96.8 0.00047 1E-08 60.3 1.0 54 159-212 221-286 (328)
56 KOG1002 Nucleotide excision re 96.7 0.00054 1.2E-08 64.9 1.2 48 161-208 535-587 (791)
57 COG5194 APC11 Component of SCF 96.7 0.0016 3.6E-08 46.9 3.0 29 179-207 53-81 (88)
58 COG5222 Uncharacterized conser 96.6 0.0012 2.5E-08 58.8 2.1 43 162-204 274-318 (427)
59 KOG0825 PHD Zn-finger protein 96.6 0.00037 8.1E-09 68.4 -1.2 49 160-208 121-172 (1134)
60 smart00744 RINGv The RING-vari 96.5 0.0027 5.8E-08 41.7 2.8 40 164-203 1-49 (49)
61 PF14447 Prok-RING_4: Prokaryo 96.4 0.0018 3.9E-08 43.5 1.7 47 162-210 7-53 (55)
62 KOG0827 Predicted E3 ubiquitin 96.4 0.0015 3.3E-08 59.7 1.8 49 164-212 6-61 (465)
63 KOG2817 Predicted E3 ubiquitin 96.4 0.0025 5.3E-08 58.5 2.8 57 160-216 332-394 (394)
64 COG5219 Uncharacterized conser 96.3 0.001 2.2E-08 66.7 0.0 48 160-207 1467-1523(1525)
65 KOG1571 Predicted E3 ubiquitin 96.3 0.0022 4.8E-08 58.1 2.0 44 161-207 304-347 (355)
66 KOG1493 Anaphase-promoting com 96.2 0.0019 4E-08 46.3 1.0 30 179-208 50-82 (84)
67 KOG1001 Helicase-like transcri 96.1 0.0013 2.9E-08 64.7 -0.5 50 163-213 455-506 (674)
68 PF14570 zf-RING_4: RING/Ubox 95.8 0.0044 9.5E-08 40.6 1.2 42 165-206 1-47 (48)
69 COG5236 Uncharacterized conser 95.3 0.014 3.1E-07 53.0 3.2 48 159-206 58-107 (493)
70 KOG4367 Predicted Zn-finger pr 95.3 0.0086 1.9E-07 55.8 1.8 36 160-195 2-37 (699)
71 PF07800 DUF1644: Protein of u 95.3 0.021 4.5E-07 46.4 3.6 50 162-211 2-95 (162)
72 KOG4185 Predicted E3 ubiquitin 95.2 0.01 2.2E-07 52.4 2.0 44 163-206 4-54 (296)
73 KOG4739 Uncharacterized protei 95.2 0.0048 1E-07 53.2 -0.2 49 164-214 5-55 (233)
74 KOG1814 Predicted E3 ubiquitin 95.1 0.012 2.6E-07 54.3 2.1 35 160-194 182-219 (445)
75 KOG2930 SCF ubiquitin ligase, 95.1 0.012 2.6E-07 44.5 1.6 28 179-206 80-107 (114)
76 COG5175 MOT2 Transcriptional r 95.0 0.016 3.4E-07 52.5 2.6 54 162-215 14-72 (480)
77 KOG3002 Zn finger protein [Gen 94.3 0.028 6.2E-07 50.3 2.3 46 159-207 45-91 (299)
78 PF10367 Vps39_2: Vacuolar sor 93.7 0.025 5.4E-07 42.0 0.7 29 162-190 78-108 (109)
79 COG5109 Uncharacterized conser 93.6 0.045 9.7E-07 49.1 2.3 58 159-216 333-396 (396)
80 PF05290 Baculo_IE-1: Baculovi 93.6 0.053 1.2E-06 42.9 2.3 50 161-210 79-135 (140)
81 KOG4445 Uncharacterized conser 93.5 0.033 7.1E-07 49.7 1.2 48 161-208 114-187 (368)
82 KOG2932 E3 ubiquitin ligase in 93.2 0.04 8.7E-07 49.3 1.2 43 163-207 91-134 (389)
83 PF03854 zf-P11: P-11 zinc fin 93.1 0.033 7.2E-07 36.3 0.4 43 164-208 4-47 (50)
84 KOG1941 Acetylcholine receptor 92.1 0.048 1E-06 50.3 0.3 45 161-205 364-414 (518)
85 KOG3579 Predicted E3 ubiquitin 91.5 0.16 3.5E-06 45.1 2.9 38 159-196 265-306 (352)
86 KOG0298 DEAD box-containing he 91.1 0.055 1.2E-06 56.2 -0.4 45 160-204 1151-1196(1394)
87 KOG2114 Vacuolar assembly/sort 90.9 0.12 2.7E-06 51.7 1.7 42 162-206 840-882 (933)
88 PF08746 zf-RING-like: RING-li 90.6 0.2 4.4E-06 31.9 2.0 38 165-202 1-43 (43)
89 KOG3970 Predicted E3 ubiquitin 90.5 0.21 4.6E-06 43.0 2.6 44 164-207 52-105 (299)
90 PF02891 zf-MIZ: MIZ/SP-RING z 90.3 0.34 7.3E-06 31.8 2.9 42 163-205 3-50 (50)
91 KOG3161 Predicted E3 ubiquitin 90.2 0.072 1.6E-06 51.9 -0.5 40 159-200 8-51 (861)
92 KOG4362 Transcriptional regula 90.0 0.058 1.2E-06 53.0 -1.3 50 162-211 21-73 (684)
93 KOG1428 Inhibitor of type V ad 89.6 0.15 3.2E-06 54.0 1.1 53 159-211 3483-3548(3738)
94 KOG1100 Predicted E3 ubiquitin 89.4 0.16 3.6E-06 43.1 1.2 39 165-207 161-200 (207)
95 PHA03096 p28-like protein; Pro 89.1 0.2 4.3E-06 44.6 1.4 43 163-205 179-232 (284)
96 KOG3113 Uncharacterized conser 89.1 0.42 9.1E-06 41.8 3.4 53 160-214 109-165 (293)
97 PF10272 Tmpp129: Putative tra 88.8 1.3 2.9E-05 40.6 6.6 33 180-212 311-356 (358)
98 PF05883 Baculo_RING: Baculovi 88.2 0.24 5.2E-06 39.3 1.2 37 162-198 26-71 (134)
99 PHA02825 LAP/PHD finger-like p 88.0 0.57 1.2E-05 38.2 3.3 48 160-208 6-60 (162)
100 KOG3039 Uncharacterized conser 87.9 0.29 6.2E-06 42.7 1.6 36 160-195 41-76 (303)
101 KOG1940 Zn-finger protein [Gen 87.5 0.28 6E-06 43.5 1.3 43 162-204 158-204 (276)
102 KOG3268 Predicted E3 ubiquitin 87.1 0.42 9E-06 39.8 2.0 48 161-208 164-229 (234)
103 KOG3800 Predicted E3 ubiquitin 87.0 0.49 1.1E-05 42.1 2.6 34 179-212 22-56 (300)
104 KOG1952 Transcription factor N 86.4 0.43 9.4E-06 48.0 2.1 45 160-204 189-244 (950)
105 COG5220 TFB3 Cdk activating ki 84.9 0.35 7.7E-06 42.0 0.6 52 161-212 9-69 (314)
106 KOG1812 Predicted E3 ubiquitin 83.8 0.41 8.9E-06 44.4 0.6 50 160-209 144-205 (384)
107 PHA02862 5L protein; Provision 81.4 1.3 2.8E-05 35.7 2.5 43 164-207 4-53 (156)
108 KOG1815 Predicted E3 ubiquitin 80.0 2 4.2E-05 40.5 3.6 55 160-214 68-133 (444)
109 PF07191 zinc-ribbons_6: zinc- 72.7 0.21 4.6E-06 35.2 -3.7 40 163-207 2-41 (70)
110 KOG3899 Uncharacterized conser 72.4 2 4.3E-05 38.5 1.4 36 180-215 325-373 (381)
111 COG5183 SSM4 Protein involved 68.7 3.9 8.5E-05 41.4 2.6 59 159-217 9-76 (1175)
112 KOG2068 MOT2 transcription fac 67.9 3.9 8.4E-05 37.1 2.2 45 163-207 250-298 (327)
113 PF12906 RINGv: RING-variant d 67.5 3.3 7E-05 26.7 1.3 38 165-202 1-47 (47)
114 KOG2034 Vacuolar sorting prote 66.7 3.1 6.6E-05 42.3 1.5 35 160-194 815-851 (911)
115 PF10571 UPF0547: Uncharacteri 66.6 2.9 6.3E-05 23.7 0.8 10 164-173 2-11 (26)
116 KOG1812 Predicted E3 ubiquitin 66.0 2.9 6.3E-05 38.8 1.1 41 162-202 306-351 (384)
117 KOG4718 Non-SMC (structural ma 65.3 3.7 8.1E-05 35.1 1.5 44 161-204 180-224 (235)
118 PF04216 FdhE: Protein involve 64.4 1.3 2.7E-05 39.3 -1.5 46 160-205 170-220 (290)
119 PF06906 DUF1272: Protein of u 63.5 11 0.00024 25.5 3.2 44 164-209 7-54 (57)
120 PF10235 Cript: Microtubule-as 62.8 4.9 0.00011 29.8 1.6 36 163-207 45-80 (90)
121 KOG4185 Predicted E3 ubiquitin 61.8 1.8 3.9E-05 38.1 -1.1 43 163-205 208-265 (296)
122 KOG0825 PHD Zn-finger protein 61.0 8.6 0.00019 38.9 3.3 44 163-206 97-153 (1134)
123 KOG0827 Predicted E3 ubiquitin 60.3 0.69 1.5E-05 42.8 -3.9 48 162-209 196-247 (465)
124 TIGR01562 FdhE formate dehydro 59.1 3.2 7E-05 37.4 0.1 46 160-205 182-233 (305)
125 PF01363 FYVE: FYVE zinc finge 58.4 2.5 5.4E-05 28.9 -0.6 33 160-192 7-43 (69)
126 PF04710 Pellino: Pellino; In 57.9 3.3 7.3E-05 38.5 0.0 40 177-216 362-411 (416)
127 PRK03564 formate dehydrogenase 55.5 5.7 0.00012 35.8 1.1 45 160-204 185-234 (309)
128 KOG2169 Zn-finger transcriptio 53.5 8.6 0.00019 38.1 2.0 53 160-212 304-361 (636)
129 KOG0309 Conserved WD40 repeat- 52.8 7.7 0.00017 39.1 1.5 42 160-201 1026-1069(1081)
130 smart00064 FYVE Protein presen 51.3 12 0.00026 25.4 1.9 33 162-194 10-46 (68)
131 KOG3842 Adaptor protein Pellin 49.1 13 0.00028 33.8 2.2 40 177-216 375-424 (429)
132 PF14446 Prok-RING_1: Prokaryo 48.1 17 0.00037 24.3 2.2 41 162-206 5-51 (54)
133 PF05605 zf-Di19: Drought indu 45.8 9.6 0.00021 24.9 0.7 41 161-208 1-43 (54)
134 cd00065 FYVE FYVE domain; Zinc 45.2 13 0.00028 24.2 1.3 31 164-194 4-38 (57)
135 PF13240 zinc_ribbon_2: zinc-r 45.1 3.6 7.8E-05 22.6 -1.2 8 197-204 14-21 (23)
136 COG3813 Uncharacterized protei 44.9 16 0.00035 26.0 1.8 27 180-208 27-53 (84)
137 KOG0824 Predicted E3 ubiquitin 44.6 7.4 0.00016 35.0 0.0 49 159-207 102-151 (324)
138 KOG2113 Predicted RNA binding 43.5 16 0.00035 33.2 1.9 44 161-206 342-386 (394)
139 KOG0883 Cyclophilin type, U bo 42.6 26 0.00056 32.9 3.2 60 160-219 38-97 (518)
140 PF04710 Pellino: Pellino; In 41.9 8.5 0.00018 35.9 0.0 46 162-207 277-339 (416)
141 PF10146 zf-C4H2: Zinc finger- 41.8 19 0.00041 31.1 2.1 27 184-210 196-222 (230)
142 KOG0269 WD40 repeat-containing 40.9 27 0.00057 35.3 3.2 48 163-210 780-831 (839)
143 PF07975 C1_4: TFIIH C1-like d 40.4 17 0.00037 24.0 1.2 24 179-202 26-49 (51)
144 PF14353 CpXC: CpXC protein 39.6 29 0.00064 26.6 2.7 46 163-208 2-50 (128)
145 KOG1829 Uncharacterized conser 38.9 14 0.0003 36.3 0.9 22 179-203 536-557 (580)
146 KOG1356 Putative transcription 38.9 12 0.00027 37.9 0.6 35 159-193 226-262 (889)
147 COG0068 HypF Hydrogenase matur 37.5 21 0.00045 35.8 1.9 43 164-206 103-183 (750)
148 PF06844 DUF1244: Protein of u 36.8 21 0.00046 24.9 1.3 12 183-194 11-22 (68)
149 KOG1815 Predicted E3 ubiquitin 36.5 16 0.00034 34.4 0.9 19 174-192 178-196 (444)
150 COG4647 AcxC Acetone carboxyla 36.2 19 0.00041 28.6 1.1 21 167-187 62-82 (165)
151 KOG2979 Protein involved in DN 35.1 17 0.00036 32.0 0.7 41 162-202 176-219 (262)
152 KOG4451 Uncharacterized conser 32.4 30 0.00064 30.1 1.8 28 183-210 250-277 (286)
153 PF10497 zf-4CXXC_R1: Zinc-fin 31.8 46 0.00099 25.1 2.6 24 181-204 37-69 (105)
154 PRK04023 DNA polymerase II lar 31.6 28 0.00061 36.3 1.8 51 161-213 625-680 (1121)
155 smart00132 LIM Zinc-binding do 31.5 37 0.00081 19.5 1.7 34 165-206 2-37 (39)
156 KOG3799 Rab3 effector RIM1 and 31.4 22 0.00047 28.5 0.8 27 159-189 62-88 (169)
157 PF13248 zf-ribbon_3: zinc-rib 29.3 10 0.00022 21.2 -1.0 8 197-204 17-24 (26)
158 PF13901 DUF4206: Domain of un 28.9 39 0.00084 28.4 1.9 38 162-204 152-197 (202)
159 KOG1819 FYVE finger-containing 28.9 16 0.00035 35.3 -0.4 35 155-189 894-932 (990)
160 smart00647 IBR In Between Ring 28.6 9.5 0.00021 25.1 -1.5 15 179-193 45-59 (64)
161 PF04423 Rad50_zn_hook: Rad50 28.4 19 0.00042 23.5 0.0 11 198-208 22-32 (54)
162 PF00412 LIM: LIM domain; Int 27.6 31 0.00068 22.1 0.9 28 163-190 27-55 (58)
163 KOG3053 Uncharacterized conser 27.5 34 0.00073 30.3 1.3 50 158-207 16-82 (293)
164 KOG2807 RNA polymerase II tran 27.4 39 0.00084 30.9 1.7 39 165-203 333-374 (378)
165 PRK11088 rrmA 23S rRNA methylt 26.6 36 0.00077 29.5 1.4 22 163-184 3-27 (272)
166 PF12773 DZR: Double zinc ribb 26.5 54 0.0012 20.7 1.9 11 197-207 30-40 (50)
167 PLN02248 cellulose synthase-li 25.6 50 0.0011 34.9 2.4 33 179-211 149-181 (1135)
168 KOG2113 Predicted RNA binding 25.4 25 0.00054 32.0 0.2 49 159-207 133-183 (394)
169 PF09986 DUF2225: Uncharacteri 24.9 20 0.00044 30.4 -0.5 52 161-212 4-64 (214)
170 KOG1609 Protein involved in mR 24.5 77 0.0017 27.6 3.1 47 162-208 78-135 (323)
171 cd00350 rubredoxin_like Rubred 24.3 49 0.0011 19.4 1.3 9 196-204 17-25 (33)
172 KOG0801 Predicted E3 ubiquitin 24.3 29 0.00063 28.7 0.3 28 159-186 174-204 (205)
173 COG5627 MMS21 DNA repair prote 23.9 41 0.00088 29.4 1.2 50 161-210 188-242 (275)
174 KOG1729 FYVE finger containing 23.7 38 0.00083 30.3 1.0 51 157-207 163-225 (288)
175 KOG2066 Vacuolar assembly/sort 23.2 34 0.00073 34.7 0.6 39 164-203 786-831 (846)
176 PF06750 DiS_P_DiS: Bacterial 22.7 38 0.00082 24.9 0.7 18 197-214 34-51 (92)
177 PF14569 zf-UDP: Zinc-binding 21.9 1E+02 0.0022 22.3 2.7 47 161-207 8-62 (80)
178 smart00154 ZnF_AN1 AN1-like Zi 21.8 61 0.0013 19.9 1.4 23 165-187 1-25 (39)
179 COG3058 FdhE Uncharacterized p 21.8 62 0.0013 29.0 1.9 45 160-204 183-233 (308)
180 KOG2789 Putative Zn-finger pro 21.4 42 0.0009 31.5 0.8 32 162-193 74-107 (482)
181 KOG3726 Uncharacterized conser 21.4 54 0.0012 32.8 1.6 39 163-204 655-697 (717)
182 smart00734 ZnF_Rad18 Rad18-lik 21.0 34 0.00074 19.2 0.1 10 198-207 3-12 (26)
183 PF05502 Dynactin_p62: Dynacti 20.9 46 0.00099 31.9 1.0 12 162-173 26-37 (483)
184 PF14311 DUF4379: Domain of un 20.3 59 0.0013 21.2 1.2 8 195-202 48-55 (55)
185 PF02318 FYVE_2: FYVE-type zin 20.2 56 0.0012 24.9 1.2 40 164-204 56-102 (118)
No 1
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-14 Score=118.42 Aligned_cols=58 Identities=48% Similarity=1.138 Sum_probs=53.1
Q ss_pred CCCCccccccCCCCCC--ceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLSE--ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~--pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
.+..+.||||++.+.+ |+.+.|||+||+.||+..++...+||+|+++++.+++++|||
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 4556899999998876 456899999999999999999999999999999999999997
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.31 E-value=2.2e-12 Score=107.39 Aligned_cols=60 Identities=32% Similarity=0.753 Sum_probs=52.5
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc----------------CCCCCCCCccccCCCceeecCCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA----------------QGKCPNCRQKVGKRGIFRVYLPT 218 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~----------------~~~CP~Cr~~v~~~~l~~iylp~ 218 (220)
....+.|+||++.+.+|+.++|||.||+.||.+|+.. ...||+|+..+...+++++|--+
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 3456899999999999999999999999999999752 24799999999999999999543
No 3
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.5e-12 Score=107.49 Aligned_cols=58 Identities=28% Similarity=0.721 Sum_probs=53.1
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcC---CCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~~l~~iyl 216 (220)
....|.|-||++..++||.+.|||.||+.||.+|+... ..||+|+..++.+.+++||=
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 46689999999999999999999999999999999853 36899999999999999993
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.21 E-value=1.3e-11 Score=84.57 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=49.2
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeec
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iy 215 (220)
+.||||.+.+.+|+.++|||+||+.||.+|++....||.|+.++..+++++++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence 67999999999999999999999999999999888999999999888887754
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.2e-11 Score=106.19 Aligned_cols=57 Identities=32% Similarity=0.732 Sum_probs=52.1
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeec
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iy 215 (220)
.+....|.+|++...+|..++|||+||+.||..|......||+||.+++..+++-++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeeec
Confidence 345679999999999999999999999999999999888999999999999888665
No 6
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=1.9e-11 Score=78.19 Aligned_cols=38 Identities=37% Similarity=1.068 Sum_probs=30.7
Q ss_pred ccccCCCCCCceEecccCccchhHHHHHHhcC----CCCCCC
Q 027652 165 CPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ----GKCPNC 202 (220)
Q Consensus 165 CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~----~~CP~C 202 (220)
||||++.+.+|++++|||+||..||.++.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998754 369987
No 7
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.8e-11 Score=111.61 Aligned_cols=97 Identities=30% Similarity=0.577 Sum_probs=69.4
Q ss_pred ccCCCCCCC--CCcceeeecCCCCccccCCCCCCCCCCCC-----CCCCccccccCCCCCCceEecccCccchhHHHHHH
Q 027652 121 RRNRPDEAT--PDNCCINVDTSNNNKNDAAPLQLPQDPMA-----AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAI 193 (220)
Q Consensus 121 ~r~~~~~~~--~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l 193 (220)
++....+++ .++..|.+. ..++......+..+.+... ...+..||||++...-|+.+.|||+||..||.+++
T Consensus 139 ~~~~~~~q~f~~any~fvv~-~gd~~~qn~dpD~p~~~e~i~qv~~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~ 217 (513)
T KOG2164|consen 139 RRRDEREQTFLNANYRFVVD-EGDYVLQNTDPDAPVDWEDIFQVYGSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYW 217 (513)
T ss_pred ccccccchhhhccchheeec-ccchhhhccCCccccchHHhhhhhcCcCCcCCcccCCCCcccccccCceeeHHHHHHHH
Confidence 333334444 567778777 4444333333333322211 01178999999999999999999999999999998
Q ss_pred hcC-----CCCCCCCccccCCCceeecCCC
Q 027652 194 AAQ-----GKCPNCRQKVGKRGIFRVYLPT 218 (220)
Q Consensus 194 ~~~-----~~CP~Cr~~v~~~~l~~iylp~ 218 (220)
... ..||+|+..+..++|..++++.
T Consensus 218 ~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 218 NYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred hhhcccCCccCCchhhhccccceeeeeecc
Confidence 744 4799999999999999999864
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.08 E-value=6.1e-11 Score=74.39 Aligned_cols=38 Identities=47% Similarity=1.208 Sum_probs=33.8
Q ss_pred ccccCCCCCCc-eEecccCccchhHHHHHHhcCCCCCCC
Q 027652 165 CPICMGPLSEA-TSTKCGHIFCKDCIKGAIAAQGKCPNC 202 (220)
Q Consensus 165 CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~~~~~CP~C 202 (220)
|+||++.+.+| +.++|||+||+.|+.+|++...+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 678999999999999999998899987
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.06 E-value=9.7e-11 Score=77.29 Aligned_cols=46 Identities=35% Similarity=0.930 Sum_probs=41.3
Q ss_pred CccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCcccc
Q 027652 162 TFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
+..|.||++...+.+.++|||. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999999999999999999 999999999998889999999886
No 10
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.00 E-value=1.3e-10 Score=74.59 Aligned_cols=40 Identities=38% Similarity=1.036 Sum_probs=35.1
Q ss_pred cccccCCCCC---CceEecccCccchhHHHHHHhcCCCCCCCC
Q 027652 164 SCPICMGPLS---EATSTKCGHIFCKDCIKGAIAAQGKCPNCR 203 (220)
Q Consensus 164 ~CpIC~~~~~---~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr 203 (220)
.|+||++.+. ..+.++|||.||..||.+|++....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999884 456779999999999999999999999996
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=3.9e-10 Score=103.59 Aligned_cols=58 Identities=28% Similarity=0.647 Sum_probs=51.1
Q ss_pred CCCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeec
Q 027652 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iy 215 (220)
.....+.|+||++.+.+|+.++|||.||..||..|+.....||+|+..+...++...+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccch
Confidence 3567789999999999999999999999999999998888899999998876665544
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.89 E-value=1.2e-09 Score=94.33 Aligned_cols=47 Identities=30% Similarity=0.737 Sum_probs=40.9
Q ss_pred CCccccccCCCCCCc--------eEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSEA--------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p--------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
.+..|+||++.+.++ +.++|||.||..||.+|+.....||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456899999987653 45689999999999999998899999999886
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.89 E-value=8.9e-10 Score=78.45 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=45.0
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhc-CCCCCCCCccccCCCceeec
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~iy 215 (220)
+.|.|||+.+.+.+|+.+++||+|++.||.+|+.. ...||+|+..+...++++.+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 56899999999999999999999999999999998 77999999999988887653
No 14
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.88 E-value=3.2e-10 Score=100.95 Aligned_cols=58 Identities=24% Similarity=0.580 Sum_probs=52.9
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
.+..+.|-||+++|..|+.++|+|+||..||..++..+..||.|+.++...+|...+|
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhH
Confidence 3456899999999999999999999999999999999999999999999888876654
No 15
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.2e-10 Score=107.68 Aligned_cols=57 Identities=33% Similarity=0.869 Sum_probs=52.8
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHh-cCCCCCCCCccccCCCceeecC
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA-AQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~-~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
...+.||+|...+.+.+++.|||+||..|+.+.+. ++.+||.|...|..+|+++|||
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 45679999999999999999999999999998877 6789999999999999999997
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=2.1e-09 Score=67.74 Aligned_cols=38 Identities=42% Similarity=1.199 Sum_probs=34.6
Q ss_pred ccccCCCCCCce-EecccCccchhHHHHHHh--cCCCCCCC
Q 027652 165 CPICMGPLSEAT-STKCGHIFCKDCIKGAIA--AQGKCPNC 202 (220)
Q Consensus 165 CpIC~~~~~~pv-~l~CgH~fC~~Ci~~~l~--~~~~CP~C 202 (220)
|+||++.+.+++ .++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 889999999999999998 44589987
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.79 E-value=5.2e-09 Score=65.69 Aligned_cols=43 Identities=37% Similarity=1.069 Sum_probs=37.0
Q ss_pred cccccCCCCCCceEec-ccCccchhHHHHHHhc-CCCCCCCCccc
Q 027652 164 SCPICMGPLSEATSTK-CGHIFCKDCIKGAIAA-QGKCPNCRQKV 206 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l~-CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v 206 (220)
.|+||++.+.+++.+. |||.||..|+..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999997777665 9999999999999987 66899998753
No 18
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.3e-09 Score=91.66 Aligned_cols=52 Identities=29% Similarity=0.687 Sum_probs=46.7
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHH-HHhcCC-CCCCCCccccCCCc
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKG-AIAAQG-KCPNCRQKVGKRGI 211 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~-~l~~~~-~CP~Cr~~v~~~~l 211 (220)
+.++.|+||++.+..|..++|||+||..||.. |-++.. .||+||+.+..+++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 56899999999999999999999999999998 766655 59999999988776
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.66 E-value=2.2e-08 Score=60.65 Aligned_cols=38 Identities=39% Similarity=1.147 Sum_probs=34.4
Q ss_pred ccccCCCCCCceEecccCccchhHHHHHHh-cCCCCCCC
Q 027652 165 CPICMGPLSEATSTKCGHIFCKDCIKGAIA-AQGKCPNC 202 (220)
Q Consensus 165 CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~-~~~~CP~C 202 (220)
|+||++....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999998 55679987
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.65 E-value=8e-09 Score=90.49 Aligned_cols=52 Identities=33% Similarity=0.749 Sum_probs=46.6
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCc
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l 211 (220)
...+.|-||...+..|+.++|||+||+.||..++..+..||+||......-+
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 4457999999999999999999999999999999999999999998765433
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=1.8e-08 Score=64.83 Aligned_cols=41 Identities=41% Similarity=0.995 Sum_probs=34.7
Q ss_pred cccccCCCC---CCceEecccCccchhHHHHHHhcCCCCCCCCc
Q 027652 164 SCPICMGPL---SEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 164 ~CpIC~~~~---~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
.|++|++.+ ..+..++|||+||..|+.++......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999988 24678899999999999998855668999975
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.63 E-value=1.5e-08 Score=65.13 Aligned_cols=35 Identities=46% Similarity=1.095 Sum_probs=22.4
Q ss_pred ccccCCCCCC----ceEecccCccchhHHHHHHhcC----CCCC
Q 027652 165 CPICMGPLSE----ATSTKCGHIFCKDCIKGAIAAQ----GKCP 200 (220)
Q Consensus 165 CpIC~~~~~~----pv~l~CgH~fC~~Ci~~~l~~~----~~CP 200 (220)
||||.+ +.+ |+.|+|||+||..|+.++.+.. .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 8999999999999999998854 2576
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.58 E-value=2.9e-08 Score=84.20 Aligned_cols=48 Identities=29% Similarity=0.682 Sum_probs=38.3
Q ss_pred CCCccccccCCCCCC---------ceEecccCccchhHHHHHHhcC------CCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSE---------ATSTKCGHIFCKDCIKGAIAAQ------GKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~---------pv~l~CgH~fC~~Ci~~~l~~~------~~CP~Cr~~v~ 207 (220)
..+..|+||++...+ ++..+|+|.||..||..|.... ..||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 345689999997643 2455999999999999999742 35999999876
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.52 E-value=7.5e-08 Score=68.60 Aligned_cols=40 Identities=40% Similarity=0.942 Sum_probs=33.3
Q ss_pred cccccCCCCCCc-------------eEecccCccchhHHHHHHhcCCCCCCCC
Q 027652 164 SCPICMGPLSEA-------------TSTKCGHIFCKDCIKGAIAAQGKCPNCR 203 (220)
Q Consensus 164 ~CpIC~~~~~~p-------------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr 203 (220)
.|+||++.+.++ +..+|||.|+..||.+|++....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 599999988332 3348999999999999999999999997
No 25
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.44 E-value=4.4e-08 Score=67.70 Aligned_cols=51 Identities=33% Similarity=0.774 Sum_probs=27.1
Q ss_pred CCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCcee
Q 027652 161 PTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFR 213 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~ 213 (220)
..+.|++|.+.+.+|+.+ .|.|+||..|+...+ ...||+|+.+...+|++-
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD~~~ 57 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQDIQI 57 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS---
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHHHHh
Confidence 356899999999999865 999999999997644 346999999988777653
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-07 Score=85.10 Aligned_cols=48 Identities=33% Similarity=0.728 Sum_probs=41.3
Q ss_pred CCCccccccCCCCC-C------------ceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLS-E------------ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~-~------------pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
..+..|.||++.+. . |..++|||.++..|++.|+.++..||+||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 45668999999743 2 378899999999999999999999999999964
No 27
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.6e-07 Score=90.04 Aligned_cols=58 Identities=26% Similarity=0.603 Sum_probs=49.5
Q ss_pred CCCccccccCCCCCC-----ceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCC
Q 027652 160 APTFSCPICMGPLSE-----ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-----pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp 217 (220)
..+..|+||.+.+.. +..++|||.||..|++.|++++..||+||..+..........+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~~~~ 351 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQIAAL 351 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccccccccCC
Confidence 346799999999998 7899999999999999999999999999997766665555444
No 28
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.34 E-value=3.6e-07 Score=81.36 Aligned_cols=57 Identities=23% Similarity=0.642 Sum_probs=43.4
Q ss_pred CccccccCCC-CCCce---Ee-cccCccchhHHHHHHhc-CCCCCCCCccccCCCceeecCCC
Q 027652 162 TFSCPICMGP-LSEAT---ST-KCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYLPT 218 (220)
Q Consensus 162 ~~~CpIC~~~-~~~pv---~l-~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~iylp~ 218 (220)
+..||+|... +.+|. .+ +|||.||..|+..++.. ...||.|+..+..+++....++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D 65 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFED 65 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccccc
Confidence 4589999983 33332 22 79999999999997654 45899999999988877666654
No 29
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.6e-07 Score=83.45 Aligned_cols=46 Identities=24% Similarity=0.681 Sum_probs=40.0
Q ss_pred ccccccCCCCCCc---eEecccCccchhHHHHHHhcCCC-CCCCCccccC
Q 027652 163 FSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIAAQGK-CPNCRQKVGK 208 (220)
Q Consensus 163 ~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~~~~~-CP~Cr~~v~~ 208 (220)
..|+||++.+... ..|||+|.|+..||..|+...++ ||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5899999999864 56799999999999999998865 9999987754
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2e-07 Score=79.24 Aligned_cols=46 Identities=33% Similarity=0.873 Sum_probs=40.5
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
..+.+.|+||++.+..|+.++|||.||..|+..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999999988899999999999998874458999994
No 31
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.2e-07 Score=63.40 Aligned_cols=51 Identities=27% Similarity=0.699 Sum_probs=43.4
Q ss_pred ccccccCCCCCCceEecccCc-cchhHHHHHHh-cCCCCCCCCccccCCCceeec
Q 027652 163 FSCPICMGPLSEATSTKCGHI-FCKDCIKGAIA-AQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~-~~~~CP~Cr~~v~~~~l~~iy 215 (220)
.+|.||++...+.+...|||. .|+.|-.+.++ ....||+||+++. ++++-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~--dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK--DVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH--HHHHhh
Confidence 689999999999999999998 89999888777 4668999999886 455544
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6.9e-07 Score=78.75 Aligned_cols=51 Identities=29% Similarity=0.529 Sum_probs=44.4
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCCC-CCCCCccccCCCc
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGK-CPNCRQKVGKRGI 211 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~-CP~Cr~~v~~~~l 211 (220)
-+-.|+||+....-|+.+.|+|.||+.||+......++ |++||.+|...-+
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 34589999999999999999999999999988877665 9999999986433
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1e-06 Score=77.83 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=40.0
Q ss_pred CccccccCCCCCCc---eEecccCccchhHHHHHHh-cCCCCCCCCccccC
Q 027652 162 TFSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIA-AQGKCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~-~~~~CP~Cr~~v~~ 208 (220)
.-.|+||+..+.+. +.+||.|.|+..|+.+|+. ...+||+||.++..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46899999988643 5679999999999999998 56699999998863
No 34
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.9e-06 Score=75.58 Aligned_cols=55 Identities=25% Similarity=0.732 Sum_probs=47.4
Q ss_pred CCCccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 160 APTFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
+....|.||+....+.+.+||.|. .|..|.+.+......||+||+++.. +..+|.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~--ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE--LLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh--hheecc
Confidence 446799999999999999999998 8999999887778899999999873 555554
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=8.7e-07 Score=79.60 Aligned_cols=50 Identities=38% Similarity=0.840 Sum_probs=42.9
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhcC-CCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQ-GKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~-~~CP~Cr~~v~~ 208 (220)
..-.+.|+||++.++..+++ .|+|.||..||.+.++.. ..||.||+.+..
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 45578999999999998777 799999999999888854 589999998853
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.8e-06 Score=76.86 Aligned_cols=50 Identities=30% Similarity=0.828 Sum_probs=45.6
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
....|.|.||+..+..|++++|||.||..||.+.+.....||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 35689999999999999999999999999999988888899999998864
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.4e-05 Score=69.75 Aligned_cols=50 Identities=32% Similarity=0.731 Sum_probs=42.4
Q ss_pred CCCCCccccccCCCCCCceEe-cccCccchhHHHHHHhc--CCCCCCCCcccc
Q 027652 158 AAAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAA--QGKCPNCRQKVG 207 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~--~~~CP~Cr~~v~ 207 (220)
....+.+||+|.+.++.|... +|||+||+.|+...... ...||.|...+.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 356778999999999999877 59999999999887663 468999988776
No 38
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.3e-05 Score=69.16 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=53.2
Q ss_pred CCCccccccCCCCCCceE----ecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 160 APTFSCPICMGPLSEATS----TKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~----l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
...+.||+|.+.+.+.+. -+|||+||+.|+++++...+.||+|..+++.+||+.+--.+|
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGGT 282 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGGT 282 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeecccc
Confidence 367899999999998643 399999999999999999999999999999999998876655
No 39
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.80 E-value=1.6e-05 Score=58.08 Aligned_cols=31 Identities=42% Similarity=0.837 Sum_probs=27.0
Q ss_pred cccCccchhHHHHHHhcC---CCCCCCCccccCC
Q 027652 179 KCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKR 209 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~ 209 (220)
.|+|.|+..||.+|+..+ ..||+||++...+
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 799999999999999853 5899999987643
No 40
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.77 E-value=7.4e-06 Score=73.11 Aligned_cols=50 Identities=36% Similarity=0.821 Sum_probs=43.9
Q ss_pred CCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 160 APTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
.....|.+|..++.+++++ -|-|+||+.||.+++.....||.|...+...
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4567999999999998766 8999999999999999999999998877643
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.73 E-value=1.3e-05 Score=67.05 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=42.1
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
.-.|.|.||...+..|+.+.|||.||..|..+-.+....|-+|.+...
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred CCceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 346899999999999999999999999999887777789999977553
No 42
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.56 E-value=3.1e-05 Score=52.65 Aligned_cols=42 Identities=33% Similarity=0.778 Sum_probs=29.7
Q ss_pred CCCccccccCCCCCCceEe-cccCccchhHHHHHHhc--CCCCCC
Q 027652 160 APTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAA--QGKCPN 201 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~--~~~CP~ 201 (220)
...+.|||.+..+.+|+.- .|||+|.+..|..++.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4467999999999999875 99999999999999943 347998
No 43
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.2e-05 Score=69.03 Aligned_cols=58 Identities=22% Similarity=0.524 Sum_probs=51.8
Q ss_pred CCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCC
Q 027652 160 APTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp 217 (220)
.+...||+|+....+|..+ -.|-+||+.|+.+++...+.||+...+....+++++|-+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHhcC
Confidence 3567899999999999777 569999999999999999999999999998899998865
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.53 E-value=4.3e-05 Score=70.67 Aligned_cols=53 Identities=36% Similarity=0.880 Sum_probs=47.0
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCc
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l 211 (220)
..+++.|++|...+.+|+.+ .|||.||..|+..|+.....||.|+..+...+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 46788999999999999994 999999999999999998899999888765443
No 45
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.3e-05 Score=68.10 Aligned_cols=47 Identities=34% Similarity=0.682 Sum_probs=42.0
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
-.|.|-||...+..||.+.|||.||..|..+-++....|.+|.+.+.
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 35789999999999999999999999999888877789999987664
No 46
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.42 E-value=0.00018 Score=62.91 Aligned_cols=60 Identities=22% Similarity=0.508 Sum_probs=48.9
Q ss_pred CCCCCccccccCCCCCCc---e-EecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCC
Q 027652 158 AAAPTFSCPICMGPLSEA---T-STKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPT 218 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~p---v-~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~ 218 (220)
.....|.|||....+... + ..+|||+|+..+++... ....||+|..++...|++.|.-++
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence 356678999999988542 2 33999999999999884 456899999999999999987654
No 47
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00011 Score=66.34 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=46.4
Q ss_pred CCCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
+..++..||||.......+..||+|.-|+.||.+.+...+.|-.|+..+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 456788999999999999999999999999999999999999999888764
No 48
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=1.9e-05 Score=69.48 Aligned_cols=42 Identities=36% Similarity=0.823 Sum_probs=37.0
Q ss_pred CccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCcccc
Q 027652 162 TFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
...|.||++.+.+-+.|+|||. -|..|-+++ ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6799999999999999999995 799996644 48999999876
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=9.8e-05 Score=67.71 Aligned_cols=54 Identities=37% Similarity=0.808 Sum_probs=44.7
Q ss_pred CccccccCCCCCCc-----eEecccCccchhHHHHHHhcC--CCCCCCCccccCCCceeec
Q 027652 162 TFSCPICMGPLSEA-----TSTKCGHIFCKDCIKGAIAAQ--GKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 162 ~~~CpIC~~~~~~p-----v~l~CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v~~~~l~~iy 215 (220)
...||||++.+..+ +.+.|||.|-..||++|+.+. +.||.|..+..+++|.++|
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 45899999988765 567999999999999999632 3799999988887777665
No 50
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.06 E-value=0.00015 Score=51.20 Aligned_cols=47 Identities=23% Similarity=0.598 Sum_probs=23.7
Q ss_pred CccccccCCCCC-C---ceEe----cccCccchhHHHHHHhcC-----------CCCCCCCccccC
Q 027652 162 TFSCPICMGPLS-E---ATST----KCGHIFCKDCIKGAIAAQ-----------GKCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~-~---pv~l----~CgH~fC~~Ci~~~l~~~-----------~~CP~Cr~~v~~ 208 (220)
+..|+||+.... . |..+ .|+..|+..|+.+|+... ..||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 357999998765 2 2222 699999999999998731 259999998863
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00034 Score=63.58 Aligned_cols=48 Identities=31% Similarity=0.743 Sum_probs=39.5
Q ss_pred CCCccccccCCCCCCce-----E---ecccCccchhHHHHHHh--c-----CCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEAT-----S---TKCGHIFCKDCIKGAIA--A-----QGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv-----~---l~CgH~fC~~Ci~~~l~--~-----~~~CP~Cr~~v~ 207 (220)
..+..|.||++...+.. . .+|.|.||..||.+|-. + .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 55779999999888765 3 57999999999999984 3 368999998765
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.01 E-value=0.00045 Score=64.12 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=38.1
Q ss_pred CCCCccccccCCCCCCce----EecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEAT----STKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
..+.-+||||++.+...+ ++.|.|.|...|+.+|. ...||+||.-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 445559999999887654 55899999999999884 678999987655
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.00 E-value=0.0003 Score=64.50 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=42.1
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcC--CCCCCCCccccCCCce
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ--GKCPNCRQKVGKRGIF 212 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v~~~~l~ 212 (220)
-.|.||-+--++..+-+|||..|..|+..|.... ..||.||..++-.+-+
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 3799999988888888999999999999998643 5899999999754433
No 54
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00043 Score=64.96 Aligned_cols=48 Identities=33% Similarity=0.674 Sum_probs=37.9
Q ss_pred CCCccccccCCCCCC-----------------ceEecccCccchhHHHHHHhc-CCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSE-----------------ATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-----------------pv~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~ 207 (220)
.....|+||+....- -+.+||.|+|+..|+++|+.. +-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 445689999975431 234599999999999999984 448999999876
No 55
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00047 Score=60.33 Aligned_cols=54 Identities=26% Similarity=0.668 Sum_probs=41.4
Q ss_pred CCCCccccccCCCCCC----------ceEecccCccchhHHHHHHhc--CCCCCCCCccccCCCce
Q 027652 159 AAPTFSCPICMGPLSE----------ATSTKCGHIFCKDCIKGAIAA--QGKCPNCRQKVGKRGIF 212 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~----------pv~l~CgH~fC~~Ci~~~l~~--~~~CP~Cr~~v~~~~l~ 212 (220)
..++..|+||-..+.. ...+.|+|+|+..||+.|-.. ...||.|++++.-+.+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 4567789999876543 346799999999999999764 44799999988654443
No 56
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.74 E-value=0.00054 Score=64.87 Aligned_cols=48 Identities=27% Similarity=0.704 Sum_probs=41.5
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcC-----CCCCCCCccccC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ-----GKCPNCRQKVGK 208 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~-----~~CP~Cr~~v~~ 208 (220)
....|.+|.+...+++...|.|.||..|+++++... -.||.|...++.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 455899999999999999999999999999998742 379999887764
No 57
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.68 E-value=0.0016 Score=46.93 Aligned_cols=29 Identities=34% Similarity=0.630 Sum_probs=27.2
Q ss_pred cccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 179 KCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
.|.|.|+.-||.+|+.....||+++++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 79999999999999999999999999875
No 58
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.59 E-value=0.0012 Score=58.77 Aligned_cols=43 Identities=42% Similarity=1.025 Sum_probs=37.4
Q ss_pred CccccccCCCCCCceEe-cccCccchhHHHHHHhc-CCCCCCCCc
Q 027652 162 TFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAA-QGKCPNCRQ 204 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~-~~~CP~Cr~ 204 (220)
.+.||.|...+.+|+.+ -|+|.||..||...+.. ...||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 38999999999999999 57999999999987764 569999954
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.57 E-value=0.00037 Score=68.45 Aligned_cols=49 Identities=22% Similarity=0.613 Sum_probs=41.0
Q ss_pred CCCccccccCCCCCCc---eEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.....||+|+..+.+. ...+|+|.||..||..|-+....||+||..|..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4567899998876654 334899999999999999999999999998864
No 60
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.48 E-value=0.0027 Score=41.69 Aligned_cols=40 Identities=23% Similarity=0.658 Sum_probs=31.0
Q ss_pred cccccCC--CCCCceEeccc-----CccchhHHHHHHhcCC--CCCCCC
Q 027652 164 SCPICMG--PLSEATSTKCG-----HIFCKDCIKGAIAAQG--KCPNCR 203 (220)
Q Consensus 164 ~CpIC~~--~~~~pv~l~Cg-----H~fC~~Ci~~~l~~~~--~CP~Cr 203 (220)
.|.||++ ...++...||. |.++..|+.+|+.... .||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 34456677885 7799999999997554 899994
No 61
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.42 E-value=0.0018 Score=43.49 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=37.8
Q ss_pred CccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
...|-.|...-...+.++|||..|..|+. +..-+.||.|..++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~--~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFP--GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccC--hhhccCCCCCCCcccCCC
Confidence 34678888887888999999999999975 335568999999987654
No 62
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0015 Score=59.72 Aligned_cols=49 Identities=29% Similarity=0.723 Sum_probs=35.6
Q ss_pred cccccCCCCCCce---Ee-cccCccchhHHHHHHhcC---CCCCCCCccccCCCce
Q 027652 164 SCPICMGPLSEAT---ST-KCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGIF 212 (220)
Q Consensus 164 ~CpIC~~~~~~pv---~l-~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~~l~ 212 (220)
.|.||.+...... .+ .|||+|+..|+..|+... ..||+|+-.+....++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 7999966544332 22 599999999999999853 4799999666554443
No 63
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0025 Score=58.49 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=46.4
Q ss_pred CCCccccccCCCCC---CceEecccCccchhHHHHHHhcC---CCCCCCCccccCCCceeecC
Q 027652 160 APTFSCPICMGPLS---EATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 160 ~~~~~CpIC~~~~~---~pv~l~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~~l~~iyl 216 (220)
-..|.|||=.+.-. .|+.+.|||+.|+.-+.++.+.. .+||.|-......+.+++|+
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 34689998655433 47999999999999999988754 48999999888888888885
No 64
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.30 E-value=0.001 Score=66.70 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=37.1
Q ss_pred CCCccccccCCCCCC-----c--eEecccCccchhHHHHHHhcC--CCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSE-----A--TSTKCGHIFCKDCIKGAIAAQ--GKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-----p--v~l~CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v~ 207 (220)
....+|+||...+.. | .-..|.|.|+.+|+.+|.+.+ ..||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344589999987652 1 223699999999999999864 48999998775
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0022 Score=58.10 Aligned_cols=44 Identities=30% Similarity=0.748 Sum_probs=34.4
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
....|.||.+...+.+.++|||+-| |..-... -..||+||+.+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh-CCCCchhHHHHH
Confidence 3458999999999999999999866 6544332 335999999875
No 66
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0019 Score=46.28 Aligned_cols=30 Identities=40% Similarity=0.750 Sum_probs=25.9
Q ss_pred cccCccchhHHHHHHhc---CCCCCCCCccccC
Q 027652 179 KCGHIFCKDCIKGAIAA---QGKCPNCRQKVGK 208 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~---~~~CP~Cr~~v~~ 208 (220)
.|.|.|..-||.+|+.. +..||+||+....
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 79999999999999984 4589999998764
No 67
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.07 E-value=0.0013 Score=64.72 Aligned_cols=50 Identities=34% Similarity=0.838 Sum_probs=42.9
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcC--CCCCCCCccccCCCcee
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ--GKCPNCRQKVGKRGIFR 213 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v~~~~l~~ 213 (220)
+.|.+|.+ ...++.+.|||.||..|+...+... ..||.|+..+..+++..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 79999999 7888999999999999999988753 37999999887766554
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.79 E-value=0.0044 Score=40.61 Aligned_cols=42 Identities=33% Similarity=0.940 Sum_probs=21.5
Q ss_pred ccccCCCCCCc--eEe--cccCccchhHHHHHHh-cCCCCCCCCccc
Q 027652 165 CPICMGPLSEA--TST--KCGHIFCKDCIKGAIA-AQGKCPNCRQKV 206 (220)
Q Consensus 165 CpIC~~~~~~p--v~l--~CgH~fC~~Ci~~~l~-~~~~CP~Cr~~v 206 (220)
||+|.+.+... ... +||+.+|..|+.+.+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877322 233 6899999999999887 467999999864
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.34 E-value=0.014 Score=52.96 Aligned_cols=48 Identities=29% Similarity=0.747 Sum_probs=40.4
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHH--HhcCCCCCCCCccc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGA--IAAQGKCPNCRQKV 206 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~--l~~~~~CP~Cr~~v 206 (220)
.++...|-||.+.++-...+||+|..|..|..+. +...+.|++||..-
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4566789999999999899999999999997554 55788999998754
No 70
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.31 E-value=0.0086 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.678 Sum_probs=31.9
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhc
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA 195 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~ 195 (220)
++.+.|+||...+.+|++++|+|..|..|....+..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 467799999999999999999999999998876653
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.26 E-value=0.021 Score=46.43 Aligned_cols=50 Identities=28% Similarity=0.615 Sum_probs=35.8
Q ss_pred CccccccCCCCCCceEeccc------------Ccc-chhHHHHHHhc-------------------------------CC
Q 027652 162 TFSCPICMGPLSEATSTKCG------------HIF-CKDCIKGAIAA-------------------------------QG 197 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~Cg------------H~f-C~~Ci~~~l~~-------------------------------~~ 197 (220)
+..||||++.+.+.|.|-|. ..| ...|+.++.+. .-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 45899999999999998543 221 46788777651 11
Q ss_pred CCCCCCccccCCCc
Q 027652 198 KCPNCRQKVGKRGI 211 (220)
Q Consensus 198 ~CP~Cr~~v~~~~l 211 (220)
.||+||..|.-+.+
T Consensus 82 ~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 82 ACPLCRGEVKGWTV 95 (162)
T ss_pred cCccccCceeceEE
Confidence 49999999976543
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.01 Score=52.41 Aligned_cols=44 Identities=32% Similarity=0.773 Sum_probs=36.0
Q ss_pred ccccccCCCCC------CceEecccCccchhHHHHHHhcCC-CCCCCCccc
Q 027652 163 FSCPICMGPLS------EATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKV 206 (220)
Q Consensus 163 ~~CpIC~~~~~------~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v 206 (220)
+.|-||-+.+. .|..+.|||++|..|+.+.+.... .||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 36889987665 367788999999999999887654 799999984
No 73
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.21 E-value=0.0048 Score=53.16 Aligned_cols=49 Identities=29% Similarity=0.703 Sum_probs=33.2
Q ss_pred cccccCCCCC-Cc-eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 164 SCPICMGPLS-EA-TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 164 ~CpIC~~~~~-~p-v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
-|-.|..... .+ ..+.|+|+||..|...-. ...||+|++.+..-.+...
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeecccc
Confidence 5777766444 22 355999999999975332 2389999999765444433
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.012 Score=54.34 Aligned_cols=35 Identities=31% Similarity=0.782 Sum_probs=28.6
Q ss_pred CCCccccccCCCCCCc---eEecccCccchhHHHHHHh
Q 027652 160 APTFSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIA 194 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~ 194 (220)
...+.|.||++...-. +.++|+|+||+.|++.+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 3468999999866542 5679999999999998876
No 75
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.012 Score=44.49 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=25.5
Q ss_pred cccCccchhHHHHHHhcCCCCCCCCccc
Q 027652 179 KCGHIFCKDCIKGAIAAQGKCPNCRQKV 206 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v 206 (220)
.|.|.|+.-||.+|++....||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 6999999999999999999999997643
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.04 E-value=0.016 Score=52.49 Aligned_cols=54 Identities=28% Similarity=0.712 Sum_probs=39.6
Q ss_pred CccccccCCCCCCc--eE--ecccCccchhHHHHHHhc-CCCCCCCCccccCCCceeec
Q 027652 162 TFSCPICMGPLSEA--TS--TKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 162 ~~~CpIC~~~~~~p--v~--l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~iy 215 (220)
+..||+|++.+... -. .+||...|.-|+...... ..+||.||.....+++.-+-
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~ 72 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVT 72 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEe
Confidence 33499999977532 22 378988899998766543 56999999999887776443
No 77
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.26 E-value=0.028 Score=50.32 Aligned_cols=46 Identities=35% Similarity=0.904 Sum_probs=37.7
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
..+-+.||||.+.+..|+.- .=||.-|..|-. +...+||.|+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 45678999999999988543 569999999964 35679999999887
No 78
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.73 E-value=0.025 Score=42.00 Aligned_cols=29 Identities=34% Similarity=0.836 Sum_probs=23.9
Q ss_pred CccccccCCCCCCceE--ecccCccchhHHH
Q 027652 162 TFSCPICMGPLSEATS--TKCGHIFCKDCIK 190 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~--l~CgH~fC~~Ci~ 190 (220)
...|++|...+.+.+. .||||+|+..|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3379999999987644 4999999999975
No 79
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.62 E-value=0.045 Score=49.15 Aligned_cols=58 Identities=24% Similarity=0.478 Sum_probs=45.6
Q ss_pred CCCCccccccCCCCC---CceEecccCccchhHHHHHHhcC---CCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLS---EATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~---~pv~l~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~~l~~iyl 216 (220)
....|.||+=.+.-+ .|+.+.|||+.-+.-+....+.. .+||.|...-...+++++|+
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 456789998555333 47999999999999888776643 48999998888889988875
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.57 E-value=0.053 Score=42.89 Aligned_cols=50 Identities=24% Similarity=0.578 Sum_probs=41.0
Q ss_pred CCccccccCCCCCCceEec----ccCccchhHHHHHHhc---CCCCCCCCccccCCC
Q 027652 161 PTFSCPICMGPLSEATSTK----CGHIFCKDCIKGAIAA---QGKCPNCRQKVGKRG 210 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~----CgH~fC~~Ci~~~l~~---~~~CP~Cr~~v~~~~ 210 (220)
..++|-||.+.-.+...+. ||-..|..|.....+. ...||.|+..++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4568999999999988883 9999999998877764 358999999887543
No 81
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.53 E-value=0.033 Score=49.71 Aligned_cols=48 Identities=27% Similarity=0.688 Sum_probs=36.9
Q ss_pred CCccccccCCCCCCc---eEecccCccchhHHHHHHhc-----------------------CCCCCCCCccccC
Q 027652 161 PTFSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIAA-----------------------QGKCPNCRQKVGK 208 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~~-----------------------~~~CP~Cr~~v~~ 208 (220)
....|.||+.-|.+. +.++|-|-|+..|+.+++.. ...||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 344799999877753 56799999999999887751 1259999998863
No 82
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.04 Score=49.34 Aligned_cols=43 Identities=28% Similarity=0.754 Sum_probs=31.5
Q ss_pred ccccccCCCCCC-ceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 163 FSCPICMGPLSE-ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 163 ~~CpIC~~~~~~-pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
-.|--|-..+.. ...++|.|+||..|.. ....+.||.|-.++.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECAR--SDSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhh--cCccccCcCcccHHH
Confidence 368888665543 3567999999999964 334678999987764
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.06 E-value=0.033 Score=36.34 Aligned_cols=43 Identities=23% Similarity=0.759 Sum_probs=26.2
Q ss_pred cccccCCCCCCceEeccc-CccchhHHHHHHhcCCCCCCCCccccC
Q 027652 164 SCPICMGPLSEATSTKCG-HIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l~Cg-H~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.|.-|. +.+.-.+.|. |-.|..|+..++..+..||+|..++..
T Consensus 4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 466665 4445567886 668999999999999999999998864
No 84
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.15 E-value=0.048 Score=50.31 Aligned_cols=45 Identities=27% Similarity=0.740 Sum_probs=35.1
Q ss_pred CCccccccCCCCCC-c---eEecccCccchhHHHHHHhcC--CCCCCCCcc
Q 027652 161 PTFSCPICMGPLSE-A---TSTKCGHIFCKDCIKGAIAAQ--GKCPNCRQK 205 (220)
Q Consensus 161 ~~~~CpIC~~~~~~-p---v~l~CgH~fC~~Ci~~~l~~~--~~CP~Cr~~ 205 (220)
-.+.|-.|-+.+-. + -.+||.|+|+.+|+..++.+. ..||.||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35689999886542 2 356999999999999998754 489999943
No 85
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.16 Score=45.06 Aligned_cols=38 Identities=26% Similarity=0.718 Sum_probs=32.6
Q ss_pred CCCCccccccCCCCCCceEecc----cCccchhHHHHHHhcC
Q 027652 159 AAPTFSCPICMGPLSEATSTKC----GHIFCKDCIKGAIAAQ 196 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~C----gH~fC~~Ci~~~l~~~ 196 (220)
....+.|.+|.+.+.+...+.| .|.||+.|-.+.++.+
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 3456899999999999988887 5889999999998865
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.11 E-value=0.055 Score=56.24 Aligned_cols=45 Identities=31% Similarity=0.730 Sum_probs=39.8
Q ss_pred CCCccccccCCCCC-CceEecccCccchhHHHHHHhcCCCCCCCCc
Q 027652 160 APTFSCPICMGPLS-EATSTKCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 160 ~~~~~CpIC~~~~~-~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
...+.|.||.+.+. ...+..|||.+|..|...|+..+..||+|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34569999999998 5677899999999999999999999999963
No 87
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=0.12 Score=51.68 Aligned_cols=42 Identities=29% Similarity=0.808 Sum_probs=34.7
Q ss_pred CccccccCCCCCCc-eEecccCccchhHHHHHHhcCCCCCCCCccc
Q 027652 162 TFSCPICMGPLSEA-TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKV 206 (220)
Q Consensus 162 ~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v 206 (220)
.-.|..|...+.-| |...|||.|+..|+. .....||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 35899999999888 456999999999987 4566999998744
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.56 E-value=0.2 Score=31.88 Aligned_cols=38 Identities=29% Similarity=0.760 Sum_probs=23.2
Q ss_pred ccccCCCCCCceEec---ccCccchhHHHHHHhcCC--CCCCC
Q 027652 165 CPICMGPLSEATSTK---CGHIFCKDCIKGAIAAQG--KCPNC 202 (220)
Q Consensus 165 CpIC~~~~~~pv~l~---CgH~fC~~Ci~~~l~~~~--~CP~C 202 (220)
|.+|.++....+.-+ |+-.++..|+.++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888777766554 888899999999998655 69987
No 89
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=0.21 Score=42.99 Aligned_cols=44 Identities=32% Similarity=0.743 Sum_probs=36.1
Q ss_pred cccccCCCCC--CceEecccCccchhHHHHHHhcC--------CCCCCCCcccc
Q 027652 164 SCPICMGPLS--EATSTKCGHIFCKDCIKGAIAAQ--------GKCPNCRQKVG 207 (220)
Q Consensus 164 ~CpIC~~~~~--~pv~l~CgH~fC~~Ci~~~l~~~--------~~CP~Cr~~v~ 207 (220)
-|.+|...+. +.+.+.|-|.|++.|+.+|...- -.||.|..++-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 6999998776 45788999999999999987742 26999988764
No 90
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.32 E-value=0.34 Score=31.82 Aligned_cols=42 Identities=24% Similarity=0.661 Sum_probs=22.5
Q ss_pred ccccccCCCCCCceEe-cccCccchhHHHHHHh---cCC--CCCCCCcc
Q 027652 163 FSCPICMGPLSEATST-KCGHIFCKDCIKGAIA---AQG--KCPNCRQK 205 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~---~~~--~CP~Cr~~ 205 (220)
+.||+....+..|+.. .|.|..|..- ..|+. ... .||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5799999999999876 8999987653 33333 222 69999763
No 91
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.072 Score=51.90 Aligned_cols=40 Identities=30% Similarity=0.773 Sum_probs=30.9
Q ss_pred CCCCccccccCCCCC----CceEecccCccchhHHHHHHhcCCCCC
Q 027652 159 AAPTFSCPICMGPLS----EATSTKCGHIFCKDCIKGAIAAQGKCP 200 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~----~pv~l~CgH~fC~~Ci~~~l~~~~~CP 200 (220)
..+.+.|+||...+. .|+.+.|||+.|..|+.... ...||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 345568999977664 58899999999999998654 45676
No 92
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.02 E-value=0.058 Score=53.03 Aligned_cols=50 Identities=32% Similarity=0.826 Sum_probs=40.2
Q ss_pred CccccccCCCCCCceEecccCccchhHHHHHHhcC---CCCCCCCccccCCCc
Q 027652 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGI 211 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~~l 211 (220)
.+.|+||...+++|+.+.|-|.||..|+...+... ..||+|+..+.+..+
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 45899999999999999999999999987665533 379999876665443
No 93
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.56 E-value=0.15 Score=54.01 Aligned_cols=53 Identities=25% Similarity=0.565 Sum_probs=39.6
Q ss_pred CCCCccccccCCCCC---CceEecccCccchhHHHHHHhcC----------CCCCCCCccccCCCc
Q 027652 159 AAPTFSCPICMGPLS---EATSTKCGHIFCKDCIKGAIAAQ----------GKCPNCRQKVGKRGI 211 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~---~pv~l~CgH~fC~~Ci~~~l~~~----------~~CP~Cr~~v~~~~l 211 (220)
.+.+..|-||+..-- ..+.+.|+|+|+..|....+... ..||+|..++...-|
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence 455778999987432 23678999999999998877632 269999998875433
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=0.16 Score=43.10 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=31.7
Q ss_pred ccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCcccc
Q 027652 165 CPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 165 CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
|-.|...-...+.+||.|. +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 9999998888778899996 99999542 346999987654
No 95
>PHA03096 p28-like protein; Provisional
Probab=89.09 E-value=0.2 Score=44.65 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=30.6
Q ss_pred ccccccCCCCCCc--------eEecccCccchhHHHHHHhcC---CCCCCCCcc
Q 027652 163 FSCPICMGPLSEA--------TSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQK 205 (220)
Q Consensus 163 ~~CpIC~~~~~~p--------v~l~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~ 205 (220)
-.|.||++..... ..-.|.|.||..|+..|.... ..||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 4799999866532 233799999999999998742 245555543
No 96
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=0.42 Score=41.81 Aligned_cols=53 Identities=17% Similarity=0.417 Sum_probs=41.1
Q ss_pred CCCccccccCCCCCCc----eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 160 APTFSCPICMGPLSEA----TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p----v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
...|.|||-.-.+... +...|||+|-.+-+++.. ...|++|.+.+...+++.|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEee
Confidence 4468999976666543 344899999998887764 6789999999998887754
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.78 E-value=1.3 Score=40.64 Aligned_cols=33 Identities=27% Similarity=0.749 Sum_probs=25.8
Q ss_pred ccCccchhHHHHHHhc-------------CCCCCCCCccccCCCce
Q 027652 180 CGHIFCKDCIKGAIAA-------------QGKCPNCRQKVGKRGIF 212 (220)
Q Consensus 180 CgH~fC~~Ci~~~l~~-------------~~~CP~Cr~~v~~~~l~ 212 (220)
|....|..|+-+|+.. ...||+||+++...|+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~ 356 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVC 356 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeee
Confidence 5666799999999872 12699999999877764
No 98
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=88.18 E-value=0.24 Score=39.28 Aligned_cols=37 Identities=27% Similarity=0.636 Sum_probs=27.5
Q ss_pred CccccccCCCCCC--c-eEeccc------CccchhHHHHHHhcCCC
Q 027652 162 TFSCPICMGPLSE--A-TSTKCG------HIFCKDCIKGAIAAQGK 198 (220)
Q Consensus 162 ~~~CpIC~~~~~~--p-v~l~Cg------H~fC~~Ci~~~l~~~~~ 198 (220)
..+|.||++.+.+ . +.++|| |.||..|+++|.+....
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~r 71 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNR 71 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccC
Confidence 4589999998876 3 344665 67999999999654433
No 99
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=88.00 E-value=0.57 Score=38.24 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=34.3
Q ss_pred CCCccccccCCCCCCceEeccc--Cc---cchhHHHHHHhcC--CCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSEATSTKCG--HI---FCKDCIKGAIAAQ--GKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~Cg--H~---fC~~Ci~~~l~~~--~~CP~Cr~~v~~ 208 (220)
.....|-||++.... ..-||. .. .+..|+.+|+..+ ..|++|..+...
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 445589999987542 234554 32 3899999999854 479999988753
No 100
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=0.29 Score=42.73 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=31.5
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhc
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA 195 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~ 195 (220)
.+-..|.+|+....+|+.++=||+||..||.+++..
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 344578999999999999999999999999888753
No 101
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.52 E-value=0.28 Score=43.52 Aligned_cols=43 Identities=37% Similarity=0.834 Sum_probs=35.9
Q ss_pred CccccccCCCCC----CceEecccCccchhHHHHHHhcCCCCCCCCc
Q 027652 162 TFSCPICMGPLS----EATSTKCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 162 ~~~CpIC~~~~~----~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
...||||.+.+. .+..++|||....+|+..+....-.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 445999988665 3567799999999999999887789999988
No 102
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=0.42 Score=39.84 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=35.0
Q ss_pred CCccccccCCCCCCce-------EecccCccchhHHHHHHhc-----C------CCCCCCCccccC
Q 027652 161 PTFSCPICMGPLSEAT-------STKCGHIFCKDCIKGAIAA-----Q------GKCPNCRQKVGK 208 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv-------~l~CgH~fC~~Ci~~~l~~-----~------~~CP~Cr~~v~~ 208 (220)
....|-||+..--+.+ ...||..|+.-|+..|++. + ..||.|..++..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3457888876444332 2379999999999999983 1 369999998864
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=0.49 Score=42.07 Aligned_cols=34 Identities=26% Similarity=0.811 Sum_probs=28.5
Q ss_pred cccCccchhHHHHHHhc-CCCCCCCCccccCCCce
Q 027652 179 KCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIF 212 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~ 212 (220)
+|||..|..|+...+.. ...||.|...+.+.++.
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 89999999999988774 45899999888776654
No 104
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=86.40 E-value=0.43 Score=47.95 Aligned_cols=45 Identities=27% Similarity=0.730 Sum_probs=34.9
Q ss_pred CCCccccccCCCCCCceEe----cccCccchhHHHHHHhcC-------CCCCCCCc
Q 027652 160 APTFSCPICMGPLSEATST----KCGHIFCKDCIKGAIAAQ-------GKCPNCRQ 204 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l----~CgH~fC~~Ci~~~l~~~-------~~CP~Cr~ 204 (220)
...+.|-||.+.+.....+ .|-|+|+..||++|.+.. -+||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4578999999977654322 588999999999998742 16999983
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.92 E-value=0.35 Score=42.04 Aligned_cols=52 Identities=21% Similarity=0.609 Sum_probs=36.7
Q ss_pred CCccccccCCCC-CCc--eEe--c-ccCccchhHHHHHHhcC-CCCC--CCCccccCCCce
Q 027652 161 PTFSCPICMGPL-SEA--TST--K-CGHIFCKDCIKGAIAAQ-GKCP--NCRQKVGKRGIF 212 (220)
Q Consensus 161 ~~~~CpIC~~~~-~~p--v~l--~-CgH~fC~~Ci~~~l~~~-~~CP--~Cr~~v~~~~l~ 212 (220)
.+..||+|.... -+| +.+ | |-|..|.+|+.+.+... ..|| -|.+-+.+.+++
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~ 69 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFI 69 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhccc
Confidence 345899998743 344 222 4 99999999999988754 4899 687766654444
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.77 E-value=0.41 Score=44.36 Aligned_cols=50 Identities=40% Similarity=0.885 Sum_probs=33.3
Q ss_pred CCCccccccCCCCCCc----eEecccCccchhHHHHHHhcC------CCCCC--CCccccCC
Q 027652 160 APTFSCPICMGPLSEA----TSTKCGHIFCKDCIKGAIAAQ------GKCPN--CRQKVGKR 209 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p----v~l~CgH~fC~~Ci~~~l~~~------~~CP~--Cr~~v~~~ 209 (220)
.....|.||+.....+ ....|+|.||..|+++++... ..||. |...++..
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLE 205 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHH
Confidence 3456899999433322 245899999999999988733 25653 55555443
No 107
>PHA02862 5L protein; Provisional
Probab=81.38 E-value=1.3 Score=35.65 Aligned_cols=43 Identities=26% Similarity=0.521 Sum_probs=32.0
Q ss_pred cccccCCCCCCceEecccC-----ccchhHHHHHHhcCC--CCCCCCcccc
Q 027652 164 SCPICMGPLSEATSTKCGH-----IFCKDCIKGAIAAQG--KCPNCRQKVG 207 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l~CgH-----~fC~~Ci~~~l~~~~--~CP~Cr~~v~ 207 (220)
.|-||++.-.+. .-||.- ..+..|+.+|+..+. .|++|+.+..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 699999876544 345542 258999999998543 7999998875
No 108
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.96 E-value=2 Score=40.50 Aligned_cols=55 Identities=29% Similarity=0.724 Sum_probs=39.6
Q ss_pred CCCccccccCCCCCC-ceEecccCccchhHHHHHHhcC--------CCCC--CCCccccCCCceee
Q 027652 160 APTFSCPICMGPLSE-ATSTKCGHIFCKDCIKGAIAAQ--------GKCP--NCRQKVGKRGIFRV 214 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-pv~l~CgH~fC~~Ci~~~l~~~--------~~CP--~Cr~~v~~~~l~~i 214 (220)
.....|.||.+.+.. ...+.|||.||..|+..++... -+|| -|.+.+....+..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeee
Confidence 445689999998875 6677999999999999988732 1455 46666655444433
No 109
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=72.72 E-value=0.21 Score=35.23 Aligned_cols=40 Identities=33% Similarity=0.750 Sum_probs=21.3
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
..||.|...+.- .=||.+|..|-+.+. ....||.|..++.
T Consensus 2 ~~CP~C~~~L~~----~~~~~~C~~C~~~~~-~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW----QGGHYHCEACQKDYK-KEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE----ETTEEEETTT--EEE-EEEE-TTT-SB-E
T ss_pred CcCCCCCCccEE----eCCEEECccccccce-ecccCCCcccHHH
Confidence 479999876432 227888888876432 3457888888765
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.41 E-value=2 Score=38.48 Aligned_cols=36 Identities=25% Similarity=0.794 Sum_probs=27.5
Q ss_pred ccCccchhHHHHHHh-------------cCCCCCCCCccccCCCceeec
Q 027652 180 CGHIFCKDCIKGAIA-------------AQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 180 CgH~fC~~Ci~~~l~-------------~~~~CP~Cr~~v~~~~l~~iy 215 (220)
|....|..|+.+|.. .+..||+||+.+...|+.-+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v~ 373 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCVD 373 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEEE
Confidence 566779999988875 234799999999877776543
No 111
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.68 E-value=3.9 Score=41.36 Aligned_cols=59 Identities=19% Similarity=0.430 Sum_probs=40.7
Q ss_pred CCCCccccccCCCC--CCceEecccCc-----cchhHHHHHHhcC--CCCCCCCccccCCCceeecCC
Q 027652 159 AAPTFSCPICMGPL--SEATSTKCGHI-----FCKDCIKGAIAAQ--GKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 159 ~~~~~~CpIC~~~~--~~pv~l~CgH~-----fC~~Ci~~~l~~~--~~CP~Cr~~v~~~~l~~iylp 217 (220)
-+++..|.||...- .+|..-||.-. .+..|+.+|+.-+ .+|-+|..++..+++..--.|
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP 76 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMP 76 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCC
Confidence 34557999998643 34555566532 5899999999854 489999999986655443333
No 112
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.90 E-value=3.9 Score=37.11 Aligned_cols=45 Identities=36% Similarity=0.828 Sum_probs=35.7
Q ss_pred ccccccCCCCC--CceEe--cccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 163 FSCPICMGPLS--EATST--KCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 163 ~~CpIC~~~~~--~pv~l--~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
-.||+|.+.+. +...+ +||+..|..|+.........||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 58999999763 22333 78999999999988888889999997654
No 113
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=67.48 E-value=3.3 Score=26.69 Aligned_cols=38 Identities=26% Similarity=0.640 Sum_probs=23.0
Q ss_pred ccccCCCCCC--ceEeccc--C---ccchhHHHHHHhc--CCCCCCC
Q 027652 165 CPICMGPLSE--ATSTKCG--H---IFCKDCIKGAIAA--QGKCPNC 202 (220)
Q Consensus 165 CpIC~~~~~~--pv~l~Cg--H---~fC~~Ci~~~l~~--~~~CP~C 202 (220)
|-||++...+ +...||+ - ..+..|+.+|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678775443 3455654 2 3588999999984 3478877
No 114
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.74 E-value=3.1 Score=42.29 Aligned_cols=35 Identities=34% Similarity=0.673 Sum_probs=26.6
Q ss_pred CCCccccccCCCCCC-c-eEecccCccchhHHHHHHh
Q 027652 160 APTFSCPICMGPLSE-A-TSTKCGHIFCKDCIKGAIA 194 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-p-v~l~CgH~fC~~Ci~~~l~ 194 (220)
+....|.+|...+.. | ...+|||.|++.|+.+...
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 344589999886653 4 4559999999999977654
No 115
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=66.62 E-value=2.9 Score=23.74 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=5.3
Q ss_pred cccccCCCCC
Q 027652 164 SCPICMGPLS 173 (220)
Q Consensus 164 ~CpIC~~~~~ 173 (220)
.||-|.....
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 3666655443
No 116
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.04 E-value=2.9 Score=38.75 Aligned_cols=41 Identities=29% Similarity=0.685 Sum_probs=29.7
Q ss_pred CccccccCCCCC-----CceEecccCccchhHHHHHHhcCCCCCCC
Q 027652 162 TFSCPICMGPLS-----EATSTKCGHIFCKDCIKGAIAAQGKCPNC 202 (220)
Q Consensus 162 ~~~CpIC~~~~~-----~pv~l~CgH~fC~~Ci~~~l~~~~~CP~C 202 (220)
-..||.|...+. +-++-.|||-||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 457999977543 23555799999999998887766656443
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.33 E-value=3.7 Score=35.10 Aligned_cols=44 Identities=18% Similarity=0.584 Sum_probs=35.2
Q ss_pred CCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCc
Q 027652 161 PTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
....|.+|.......+.. .||-.|...|+.+++.....||.|.-
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 345899999977765544 67777889999999998889999943
No 118
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=64.37 E-value=1.3 Score=39.28 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCccccccCCCCCCceEecc---c--CccchhHHHHHHhcCCCCCCCCcc
Q 027652 160 APTFSCPICMGPLSEATSTKC---G--HIFCKDCIKGAIAAQGKCPNCRQK 205 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~C---g--H~fC~~Ci~~~l~~~~~CP~Cr~~ 205 (220)
+..-.||||-......+...= | |.+|..|-..|......||.|...
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 445699999988776655533 3 568999999998777799999654
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=63.50 E-value=11 Score=25.49 Aligned_cols=44 Identities=32% Similarity=0.834 Sum_probs=29.8
Q ss_pred cccccCCCCCCc--eEecccC--ccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 164 SCPICMGPLSEA--TSTKCGH--IFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 164 ~CpIC~~~~~~p--v~l~CgH--~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
.|-.|-..+... ...-|.+ +||..|....+ ...||-|...+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 466665554422 2345554 69999998876 67899999887643
No 120
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=62.80 E-value=4.9 Score=29.77 Aligned_cols=36 Identities=28% Similarity=0.775 Sum_probs=28.1
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
-.|.||...+..+ ||.||..|.. ....|.+|.+.+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAY----KKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhc----ccCcccccCCeec
Confidence 3799998766543 8899999942 4668999998884
No 121
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.78 E-value=1.8 Score=38.14 Aligned_cols=43 Identities=33% Similarity=0.633 Sum_probs=32.8
Q ss_pred ccccccCCCCC------CceEec--------ccCccchhHHHHHHhcC-CCCCCCCcc
Q 027652 163 FSCPICMGPLS------EATSTK--------CGHIFCKDCIKGAIAAQ-GKCPNCRQK 205 (220)
Q Consensus 163 ~~CpIC~~~~~------~pv~l~--------CgH~fC~~Ci~~~l~~~-~~CP~Cr~~ 205 (220)
..|.||...+. .|..+. |||..|..|+...+... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 47899977665 234445 99999999999987755 489999863
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.96 E-value=8.6 Score=38.93 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=28.7
Q ss_pred ccccccCCCCCCce----Ee---cccCccchhHHHHHHhcC------CCCCCCCccc
Q 027652 163 FSCPICMGPLSEAT----ST---KCGHIFCKDCIKGAIAAQ------GKCPNCRQKV 206 (220)
Q Consensus 163 ~~CpIC~~~~~~pv----~l---~CgH~fC~~Ci~~~l~~~------~~CP~Cr~~v 206 (220)
.+|++|...+..++ .. .|+|.||..||+.|...- ..|+.|..-|
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 35666655555422 23 499999999999998732 2467776544
No 123
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.32 E-value=0.69 Score=42.80 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=39.8
Q ss_pred CccccccCCCCCCc----eEecccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 162 TFSCPICMGPLSEA----TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 162 ~~~CpIC~~~~~~p----v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
.-+|.||...+..- ..+.|||.+...|+.+|+....+||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 34799999877643 4568999999999999999888999999887643
No 124
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=59.14 E-value=3.2 Score=37.37 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=34.1
Q ss_pred CCCccccccCCCCCCceEe----ccc--CccchhHHHHHHhcCCCCCCCCcc
Q 027652 160 APTFSCPICMGPLSEATST----KCG--HIFCKDCIKGAIAAQGKCPNCRQK 205 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l----~Cg--H~fC~~Ci~~~l~~~~~CP~Cr~~ 205 (220)
+..-.||+|-......+.. .=| +.+|..|-..|-....+||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3456899999887655432 234 457999999998888899999763
No 125
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=58.36 E-value=2.5 Score=28.92 Aligned_cols=33 Identities=24% Similarity=0.608 Sum_probs=16.3
Q ss_pred CCCccccccCCCCCCceE----ecccCccchhHHHHH
Q 027652 160 APTFSCPICMGPLSEATS----TKCGHIFCKDCIKGA 192 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~----l~CgH~fC~~Ci~~~ 192 (220)
.+...|.+|...|.--.. -.||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 344589999988743211 179999999997543
No 126
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=57.93 E-value=3.3 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=0.0
Q ss_pred EecccCccchhHHHHHHhc---------CCCCCCCCcccc-CCCceeecC
Q 027652 177 STKCGHIFCKDCIKGAIAA---------QGKCPNCRQKVG-KRGIFRVYL 216 (220)
Q Consensus 177 ~l~CgH~fC~~Ci~~~l~~---------~~~CP~Cr~~v~-~~~l~~iyl 216 (220)
..||||+--.+..+-|.+. ...||.|-..+. ..-++++++
T Consensus 362 F~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 362 FNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------
T ss_pred ecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 4489998766666666541 247999999987 455666655
No 127
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=55.52 E-value=5.7 Score=35.85 Aligned_cols=45 Identities=24% Similarity=0.495 Sum_probs=33.9
Q ss_pred CCCccccccCCCCCCceEe---ccc--CccchhHHHHHHhcCCCCCCCCc
Q 027652 160 APTFSCPICMGPLSEATST---KCG--HIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~Cg--H~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
+..-.||+|-......+.. .=| +.+|..|-..|-....+||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3567999999987655432 234 34799999999888889999975
No 128
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=53.51 E-value=8.6 Score=38.05 Aligned_cols=53 Identities=21% Similarity=0.542 Sum_probs=35.2
Q ss_pred CCCccccccCCCCCCceE-ecccCccchhHHHHHHhcCC----CCCCCCccccCCCce
Q 027652 160 APTFSCPICMGPLSEATS-TKCGHIFCKDCIKGAIAAQG----KCPNCRQKVGKRGIF 212 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~-l~CgH~fC~~Ci~~~l~~~~----~CP~Cr~~v~~~~l~ 212 (220)
...+.|||+...+.-|.. ..|.|.-|..-..-...... .||+|.+.....+++
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred eeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 446899999887776644 47888777765432222221 699999888766554
No 129
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.78 E-value=7.7 Score=39.08 Aligned_cols=42 Identities=26% Similarity=0.596 Sum_probs=31.0
Q ss_pred CCCccccccCCCCCCc--eEecccCccchhHHHHHHhcCCCCCC
Q 027652 160 APTFSCPICMGPLSEA--TSTKCGHIFCKDCIKGAIAAQGKCPN 201 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p--v~l~CgH~fC~~Ci~~~l~~~~~CP~ 201 (220)
...+.|.+|.-...-. +-..|||+.+..|...|....-.||.
T Consensus 1026 ~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 3456677776444332 23489999999999999998888885
No 130
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=49.09 E-value=13 Score=33.83 Aligned_cols=40 Identities=20% Similarity=0.556 Sum_probs=24.3
Q ss_pred EecccCccchhHHHHHHh---------cCCCCCCCCcccc-CCCceeecC
Q 027652 177 STKCGHIFCKDCIKGAIA---------AQGKCPNCRQKVG-KRGIFRVYL 216 (220)
Q Consensus 177 ~l~CgH~fC~~Ci~~~l~---------~~~~CP~Cr~~v~-~~~l~~iyl 216 (220)
..||||+--..=.+=|.. .+..||.|...+. ....+++.+
T Consensus 375 F~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ikliF 424 (429)
T KOG3842|consen 375 FNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGYIKLIF 424 (429)
T ss_pred cCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCceEEEEE
Confidence 348999644444444433 1236999988885 455555544
No 132
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=48.09 E-value=17 Score=24.35 Aligned_cols=41 Identities=27% Similarity=0.767 Sum_probs=28.4
Q ss_pred CccccccCCCC--CCceEe--cccCccchhHHHHHHhcCCCCCC--CCccc
Q 027652 162 TFSCPICMGPL--SEATST--KCGHIFCKDCIKGAIAAQGKCPN--CRQKV 206 (220)
Q Consensus 162 ~~~CpIC~~~~--~~pv~l--~CgH~fC~~Ci~~~l~~~~~CP~--Cr~~v 206 (220)
...|++|-+.+ .+.+.. .||-.|+..|..+ ...|-. |...+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCCc
Confidence 34799999999 444444 7999999999753 345654 54443
No 133
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=45.84 E-value=9.6 Score=24.93 Aligned_cols=41 Identities=29% Similarity=0.646 Sum_probs=21.4
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHh--cCCCCCCCCccccC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA--AQGKCPNCRQKVGK 208 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~--~~~~CP~Cr~~v~~ 208 (220)
+.|.||.|...+... .| +.-|...-.. ....||+|...+..
T Consensus 1 ~~f~CP~C~~~~~~~-~L------~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-SL------VEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CCcCCCCCCCccCHH-HH------HHHHHhHCcCCCCCccCCCchhhhhh
Confidence 357899999844321 11 1112211111 12369999876553
No 134
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.18 E-value=13 Score=24.16 Aligned_cols=31 Identities=35% Similarity=0.846 Sum_probs=21.3
Q ss_pred cccccCCCCCCc----eEecccCccchhHHHHHHh
Q 027652 164 SCPICMGPLSEA----TSTKCGHIFCKDCIKGAIA 194 (220)
Q Consensus 164 ~CpIC~~~~~~p----v~l~CgH~fC~~Ci~~~l~ 194 (220)
.|.+|...|.-- .-..||++||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 688887655432 2237999999999865543
No 135
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=45.12 E-value=3.6 Score=22.57 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=3.8
Q ss_pred CCCCCCCc
Q 027652 197 GKCPNCRQ 204 (220)
Q Consensus 197 ~~CP~Cr~ 204 (220)
..||.|..
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555544
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.94 E-value=16 Score=26.03 Aligned_cols=27 Identities=33% Similarity=0.879 Sum_probs=20.8
Q ss_pred ccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 180 CGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 180 CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
--++||..|....+ ...||-|...+..
T Consensus 27 fEcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 27 FECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred EeeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 34789999987554 6789999887754
No 137
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=7.4 Score=35.02 Aligned_cols=49 Identities=37% Similarity=0.745 Sum_probs=40.3
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
..+...|-+|...+.-|... .|+|-||+-|...|......||.|+....
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred cCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 45566899999998887666 59999999999988887788888877654
No 138
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=43.51 E-value=16 Score=33.22 Aligned_cols=44 Identities=7% Similarity=-0.088 Sum_probs=34.0
Q ss_pred CCccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccc
Q 027652 161 PTFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKV 206 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v 206 (220)
..+.|-.|-.-+...+-.+|+|. ||..|.. +.....||+|....
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 35688888887777777799996 9999976 44567899996543
No 139
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.60 E-value=26 Score=32.85 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=52.7
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
..-..|.+-+-++.+|+-+.-|.+|=..-|.+|++....=|+-.+++..++|+++-+-..
T Consensus 38 LP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F~Kn 97 (518)
T KOG0883|consen 38 LPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKFHKN 97 (518)
T ss_pred CChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCCCCccccccceeeeeccC
Confidence 445578999999999999999999999999999999999999999999999998866443
No 140
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.93 E-value=8.5 Score=35.86 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=0.0
Q ss_pred CccccccCCCCCCc--------------eEecccCccchhHHHHHHh---cCCCCCCCCcccc
Q 027652 162 TFSCPICMGPLSEA--------------TSTKCGHIFCKDCIKGAIA---AQGKCPNCRQKVG 207 (220)
Q Consensus 162 ~~~CpIC~~~~~~p--------------v~l~CgH~fC~~Ci~~~l~---~~~~CP~Cr~~v~ 207 (220)
...||+=+..+.-| +-+.|||++-+.=+..... ....||+|+..-.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCccccCC
Confidence 34788765544322 4468999876543321111 2458999987544
No 141
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.83 E-value=19 Score=31.11 Aligned_cols=27 Identities=26% Similarity=0.615 Sum_probs=22.5
Q ss_pred cchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 184 FCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 184 fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
-|..|.....+....||+|+.+-..++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCC
Confidence 599999888888889999988776544
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.91 E-value=27 Score=35.30 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=34.4
Q ss_pred ccccccCCCCCCceEe--cccCccchhHHHHHHhcCCCCCC--CCccccCCC
Q 027652 163 FSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQGKCPN--CRQKVGKRG 210 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~~~CP~--Cr~~v~~~~ 210 (220)
..|.+|...+..-..- -|||.-+..|+++|+.....||. |......+.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~~~ 831 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCHYSS 831 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccccccc
Confidence 4677887666543222 69999999999999998888876 655544333
No 143
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=40.36 E-value=17 Score=24.03 Aligned_cols=24 Identities=38% Similarity=0.845 Sum_probs=12.1
Q ss_pred cccCccchhHHHHHHhcCCCCCCC
Q 027652 179 KCGHIFCKDCIKGAIAAQGKCPNC 202 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~~~CP~C 202 (220)
.|++.||..|=.=.-..--.||-|
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CCCCccccCcChhhhccccCCcCC
Confidence 578899999943211122368877
No 144
>PF14353 CpXC: CpXC protein
Probab=39.60 E-value=29 Score=26.56 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=25.0
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhc---CCCCCCCCccccC
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA---QGKCPNCRQKVGK 208 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~---~~~CP~Cr~~v~~ 208 (220)
.+||.|...+...+-+.-.-..=..-..+.+.. ...||.|...+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 479999887765543322221222222333322 2379999887753
No 145
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=38.89 E-value=14 Score=36.26 Aligned_cols=22 Identities=32% Similarity=0.933 Sum_probs=17.0
Q ss_pred cccCccchhHHHHHHhcCCCCCCCC
Q 027652 179 KCGHIFCKDCIKGAIAAQGKCPNCR 203 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~~~CP~Cr 203 (220)
.||++|+..|+.+ .+..||.|-
T Consensus 536 ~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 536 TCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHhc---cCCCCCchH
Confidence 7999999999754 344599993
No 146
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=38.86 E-value=12 Score=37.93 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=28.0
Q ss_pred CCCCccccccCCCCCCce--EecccCccchhHHHHHH
Q 027652 159 AAPTFSCPICMGPLSEAT--STKCGHIFCKDCIKGAI 193 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv--~l~CgH~fC~~Ci~~~l 193 (220)
....-.|-.|...+.+.. -..||+.||..|+..|.
T Consensus 226 ~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cCcchhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 345568999999888753 34899999999999984
No 147
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=37.46 E-value=21 Score=35.80 Aligned_cols=43 Identities=28% Similarity=0.697 Sum_probs=30.3
Q ss_pred cccccCCCCCCce----------EecccCcc--------------------chhHHHHHHhc--------CCCCCCCCcc
Q 027652 164 SCPICMGPLSEAT----------STKCGHIF--------------------CKDCIKGAIAA--------QGKCPNCRQK 205 (220)
Q Consensus 164 ~CpIC~~~~~~pv----------~l~CgH~f--------------------C~~Ci~~~l~~--------~~~CP~Cr~~ 205 (220)
.|+-|+..+.+|. -+.||..| |..|-+++... ...||.|.-.
T Consensus 103 ~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~ 182 (750)
T COG0068 103 TCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCGPH 182 (750)
T ss_pred hhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccCCC
Confidence 7999988777762 34677766 99998877542 2269999654
Q ss_pred c
Q 027652 206 V 206 (220)
Q Consensus 206 v 206 (220)
+
T Consensus 183 ~ 183 (750)
T COG0068 183 L 183 (750)
T ss_pred e
Confidence 4
No 148
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.77 E-value=21 Score=24.93 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=8.8
Q ss_pred ccchhHHHHHHh
Q 027652 183 IFCKDCIKGAIA 194 (220)
Q Consensus 183 ~fC~~Ci~~~l~ 194 (220)
-||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 149
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=16 Score=34.40 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=13.7
Q ss_pred CceEecccCccchhHHHHH
Q 027652 174 EATSTKCGHIFCKDCIKGA 192 (220)
Q Consensus 174 ~pv~l~CgH~fC~~Ci~~~ 192 (220)
.++.-.|||.||+.|...|
T Consensus 178 ~~v~C~~g~~FC~~C~~~~ 196 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEES 196 (444)
T ss_pred cceeCCCCchhHhhccccc
Confidence 3456688899999986544
No 150
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.17 E-value=19 Score=28.62 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=15.6
Q ss_pred ccCCCCCCceEecccCccchh
Q 027652 167 ICMGPLSEATSTKCGHIFCKD 187 (220)
Q Consensus 167 IC~~~~~~pv~l~CgH~fC~~ 187 (220)
||+..-...+...|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 666666665667999999964
No 151
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=35.10 E-value=17 Score=32.04 Aligned_cols=41 Identities=29% Similarity=0.604 Sum_probs=32.9
Q ss_pred CccccccCCCCCCce-EecccCccchhHHHHHHhc--CCCCCCC
Q 027652 162 TFSCPICMGPLSEAT-STKCGHIFCKDCIKGAIAA--QGKCPNC 202 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv-~l~CgH~fC~~Ci~~~l~~--~~~CP~C 202 (220)
.+.||+-...+.+|+ ...|||+|=..-+..++.. .-.||+-
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 578999888888885 4599999999999888765 3368873
No 152
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=32.42 E-value=30 Score=30.11 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.3
Q ss_pred ccchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 183 IFCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 183 ~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
..|..|-....+....||+|+.+...++
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 3588998888888889999988775544
No 153
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=31.80 E-value=46 Score=25.14 Aligned_cols=24 Identities=33% Similarity=0.897 Sum_probs=17.1
Q ss_pred cCccchhHHHHHHhc---------CCCCCCCCc
Q 027652 181 GHIFCKDCIKGAIAA---------QGKCPNCRQ 204 (220)
Q Consensus 181 gH~fC~~Ci~~~l~~---------~~~CP~Cr~ 204 (220)
.-.||..||...... .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 556999998766542 126999986
No 154
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.57 E-value=28 Score=36.31 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=33.7
Q ss_pred CCccccccCCCCCCceEecccC-----ccchhHHHHHHhcCCCCCCCCccccCCCcee
Q 027652 161 PTFSCPICMGPLSEATSTKCGH-----IFCKDCIKGAIAAQGKCPNCRQKVGKRGIFR 213 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH-----~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~ 213 (220)
....|+-|-.......--.||. .||..|-. ......||.|...+.....+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPTPYSKRK 680 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCCccceEE
Confidence 4568999988754433335884 49999933 223457999998887544443
No 155
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=31.51 E-value=37 Score=19.45 Aligned_cols=34 Identities=24% Similarity=0.747 Sum_probs=18.4
Q ss_pred ccccCCCCCCc--eEecccCccchhHHHHHHhcCCCCCCCCccc
Q 027652 165 CPICMGPLSEA--TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKV 206 (220)
Q Consensus 165 CpIC~~~~~~p--v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v 206 (220)
|..|...+... ....=+..|+..|+ .|..|...+
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCC--------CCcccCCcC
Confidence 67777766653 22233445555553 466665554
No 156
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.40 E-value=22 Score=28.48 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=16.2
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHH
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCI 189 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci 189 (220)
..++..|-||+..-. .-.|||. |..|-
T Consensus 62 v~ddatC~IC~KTKF---ADG~GH~-C~YCq 88 (169)
T KOG3799|consen 62 VGDDATCGICHKTKF---ADGCGHN-CSYCQ 88 (169)
T ss_pred cCcCcchhhhhhccc---ccccCcc-cchhh
Confidence 345568999987432 1257873 45553
No 157
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.33 E-value=10 Score=21.17 Aligned_cols=8 Identities=50% Similarity=1.198 Sum_probs=3.7
Q ss_pred CCCCCCCc
Q 027652 197 GKCPNCRQ 204 (220)
Q Consensus 197 ~~CP~Cr~ 204 (220)
..||.|..
T Consensus 17 ~fC~~CG~ 24 (26)
T PF13248_consen 17 KFCPNCGA 24 (26)
T ss_pred ccChhhCC
Confidence 34555543
No 158
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=28.88 E-value=39 Score=28.38 Aligned_cols=38 Identities=34% Similarity=0.922 Sum_probs=24.9
Q ss_pred CccccccCCC-----CCCceEe---cccCccchhHHHHHHhcCCCCCCCCc
Q 027652 162 TFSCPICMGP-----LSEATST---KCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 162 ~~~CpIC~~~-----~~~pv~l---~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
.+.|-+|... |....+. .|+.+|+..|+. ...||.|-.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 5678888751 1121222 688999999975 267999943
No 159
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=28.87 E-value=16 Score=35.26 Aligned_cols=35 Identities=26% Similarity=0.625 Sum_probs=23.1
Q ss_pred CCCCCCCCccccccCCCCCCc----eEecccCccchhHH
Q 027652 155 DPMAAAPTFSCPICMGPLSEA----TSTKCGHIFCKDCI 189 (220)
Q Consensus 155 ~~~~~~~~~~CpIC~~~~~~p----v~l~CgH~fC~~Ci 189 (220)
+..+.++-..|-.|...|..- ..-.||-+||..|-
T Consensus 894 awipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs 932 (990)
T KOG1819|consen 894 AWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCS 932 (990)
T ss_pred ccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccc
Confidence 344555556777777666432 23379999999994
No 160
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=28.63 E-value=9.5 Score=25.09 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=12.1
Q ss_pred cccCccchhHHHHHH
Q 027652 179 KCGHIFCKDCIKGAI 193 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l 193 (220)
.||+.||..|...|.
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 689999999977663
No 161
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.36 E-value=19 Score=23.49 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=5.9
Q ss_pred CCCCCCccccC
Q 027652 198 KCPNCRQKVGK 208 (220)
Q Consensus 198 ~CP~Cr~~v~~ 208 (220)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999998864
No 162
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=27.58 E-value=31 Score=22.10 Aligned_cols=28 Identities=39% Similarity=0.912 Sum_probs=13.3
Q ss_pred ccccccCCCCCCc-eEecccCccchhHHH
Q 027652 163 FSCPICMGPLSEA-TSTKCGHIFCKDCIK 190 (220)
Q Consensus 163 ~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~ 190 (220)
+.|..|...+... ....=|..||..|..
T Consensus 27 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~ 55 (58)
T PF00412_consen 27 FKCSKCGKPLNDGDFYEKDGKPYCKDCYQ 55 (58)
T ss_dssp SBETTTTCBTTTSSEEEETTEEEEHHHHH
T ss_pred cccCCCCCccCCCeeEeECCEEECHHHHh
Confidence 4555555554443 233344455555543
No 163
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.49 E-value=34 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.448 Sum_probs=33.8
Q ss_pred CCCCCccccccCCCCCCceEe----ccc-----CccchhHHHHHHhcCC--------CCCCCCcccc
Q 027652 158 AAAPTFSCPICMGPLSEATST----KCG-----HIFCKDCIKGAIAAQG--------KCPNCRQKVG 207 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l----~Cg-----H~fC~~Ci~~~l~~~~--------~CP~Cr~~v~ 207 (220)
..+.+..|-||+..-.+...- ||. |=.+..|+..|+.... .||.|+....
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 345667899999866654322 442 2368999999987432 5999987653
No 164
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=27.43 E-value=39 Score=30.92 Aligned_cols=39 Identities=31% Similarity=0.748 Sum_probs=21.0
Q ss_pred ccccCCCCCCceEe---cccCccchhHHHHHHhcCCCCCCCC
Q 027652 165 CPICMGPLSEATST---KCGHIFCKDCIKGAIAAQGKCPNCR 203 (220)
Q Consensus 165 CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~l~~~~~CP~Cr 203 (220)
|-.|++........ .|.++||..|=.=....-..||-|.
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 66664444332222 5778888888432222233678774
No 165
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.64 E-value=36 Score=29.46 Aligned_cols=22 Identities=36% Similarity=0.824 Sum_probs=15.6
Q ss_pred ccccccCCCCCC-ceEe--cccCcc
Q 027652 163 FSCPICMGPLSE-ATST--KCGHIF 184 (220)
Q Consensus 163 ~~CpIC~~~~~~-pv~l--~CgH~f 184 (220)
+.||+|...+.. ...+ ..||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 689999998862 2334 557887
No 166
>PF12773 DZR: Double zinc ribbon
Probab=26.46 E-value=54 Score=20.67 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=6.8
Q ss_pred CCCCCCCcccc
Q 027652 197 GKCPNCRQKVG 207 (220)
Q Consensus 197 ~~CP~Cr~~v~ 207 (220)
..||.|...+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 35777766554
No 167
>PLN02248 cellulose synthase-like protein
Probab=25.57 E-value=50 Score=34.89 Aligned_cols=33 Identities=30% Similarity=0.899 Sum_probs=28.1
Q ss_pred cccCccchhHHHHHHhcCCCCCCCCccccCCCc
Q 027652 179 KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l 211 (220)
.|++..|..|....++....||-|+.+.+..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 688889999999999888899999998865443
No 168
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.36 E-value=25 Score=32.00 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCCCccccccCCCCCCceEecccCc-cchhHHHHH-HhcCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHI-FCKDCIKGA-IAAQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~-l~~~~~CP~Cr~~v~ 207 (220)
......|.+|+.--......+|+|. ||..|.-+. .++...|++|...+.
T Consensus 133 ~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 133 KGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred ccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 4566789999887777777799994 999997655 555667999976554
No 169
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.89 E-value=20 Score=30.35 Aligned_cols=52 Identities=15% Similarity=0.370 Sum_probs=29.5
Q ss_pred CCccccccCCCCCCceEecc-------cCccchhH--HHHHHhcCCCCCCCCccccCCCce
Q 027652 161 PTFSCPICMGPLSEATSTKC-------GHIFCKDC--IKGAIAAQGKCPNCRQKVGKRGIF 212 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~C-------gH~fC~~C--i~~~l~~~~~CP~Cr~~v~~~~l~ 212 (220)
....||+|...|.......- .--||..- +.+.+..-..||.|......+++.
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~ 64 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFE 64 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccc
Confidence 45789999998876533211 01133221 222222233699999988876655
No 170
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.51 E-value=77 Score=27.56 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=33.2
Q ss_pred CccccccCCCCCC----ceEeccc-----CccchhHHHHHHh--cCCCCCCCCccccC
Q 027652 162 TFSCPICMGPLSE----ATSTKCG-----HIFCKDCIKGAIA--AQGKCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~~----pv~l~Cg-----H~fC~~Ci~~~l~--~~~~CP~Cr~~v~~ 208 (220)
...|-||...... +...+|. +..+..|+..|.. ....|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999985543 3455553 2258999999998 44579999876654
No 171
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.34 E-value=49 Score=19.38 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=6.4
Q ss_pred CCCCCCCCc
Q 027652 196 QGKCPNCRQ 204 (220)
Q Consensus 196 ~~~CP~Cr~ 204 (220)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 447888865
No 172
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.29 E-value=29 Score=28.66 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=19.9
Q ss_pred CCCCccccccCCCCCCc---eEecccCccch
Q 027652 159 AAPTFSCPICMGPLSEA---TSTKCGHIFCK 186 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p---v~l~CgH~fC~ 186 (220)
..++-+|.||++.+..- ..+||--+|++
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45667999999988743 45688766553
No 173
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.94 E-value=41 Score=29.41 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=36.2
Q ss_pred CCccccccCCCCCCce-EecccCccchhHHHHHHhcC--CCCCC--CCccccCCC
Q 027652 161 PTFSCPICMGPLSEAT-STKCGHIFCKDCIKGAIAAQ--GKCPN--CRQKVGKRG 210 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv-~l~CgH~fC~~Ci~~~l~~~--~~CP~--Cr~~v~~~~ 210 (220)
-+.+|||-+.....|+ ...|.|.|=..-|..++... ..||. |-+.+....
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~ 242 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDP 242 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccc
Confidence 3679999887777664 55999999999998888743 46774 655555443
No 174
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=23.69 E-value=38 Score=30.29 Aligned_cols=51 Identities=18% Similarity=0.558 Sum_probs=32.5
Q ss_pred CCCCCCccccccCCC-CCCc----eEecccCccchhHHHHHHhc-----C--CCCCCCCcccc
Q 027652 157 MAAAPTFSCPICMGP-LSEA----TSTKCGHIFCKDCIKGAIAA-----Q--GKCPNCRQKVG 207 (220)
Q Consensus 157 ~~~~~~~~CpIC~~~-~~~p----v~l~CgH~fC~~Ci~~~l~~-----~--~~CP~Cr~~v~ 207 (220)
.+..+...|.+|... |..- .--.||++||..|-...+.. . ..|..|...+.
T Consensus 163 ~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 163 LPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 345667899999984 3321 12279999999997552221 1 15888866664
No 175
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.24 E-value=34 Score=34.72 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=27.0
Q ss_pred cccccCCCCC-------CceEecccCccchhHHHHHHhcCCCCCCCC
Q 027652 164 SCPICMGPLS-------EATSTKCGHIFCKDCIKGAIAAQGKCPNCR 203 (220)
Q Consensus 164 ~CpIC~~~~~-------~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr 203 (220)
.|..|+.... .-+...|||.|++.|+.-...+.. |-.|.
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 7888887554 235669999999999865544333 65553
No 176
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=22.74 E-value=38 Score=24.91 Aligned_cols=18 Identities=17% Similarity=0.660 Sum_probs=11.8
Q ss_pred CCCCCCCccccCCCceee
Q 027652 197 GKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 197 ~~CP~Cr~~v~~~~l~~i 214 (220)
+.||.|.+++.-.+++++
T Consensus 34 S~C~~C~~~L~~~~lIPi 51 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPI 51 (92)
T ss_pred CcCcCCCCcCcccccchH
Confidence 457777777766666655
No 177
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=21.95 E-value=1e+02 Score=22.31 Aligned_cols=47 Identities=19% Similarity=0.530 Sum_probs=18.6
Q ss_pred CCccccccCCCCCC----ceEe---cccCccchhHHHHHHhc-CCCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSE----ATST---KCGHIFCKDCIKGAIAA-QGKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~----pv~l---~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~ 207 (220)
..-.|.||-+..-- .+.+ .|+--.|+.|..--.+. ...||.|+...+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34479999875432 1333 56777899998654443 457999987765
No 178
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.79 E-value=61 Score=19.90 Aligned_cols=23 Identities=26% Similarity=0.894 Sum_probs=12.7
Q ss_pred ccccCCCCCC-ceEec-ccCccchh
Q 027652 165 CPICMGPLSE-ATSTK-CGHIFCKD 187 (220)
Q Consensus 165 CpIC~~~~~~-pv~l~-CgH~fC~~ 187 (220)
|.+|.....- |..-. |+.+||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 4455554433 54444 77777753
No 179
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=62 Score=28.99 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=32.2
Q ss_pred CCCccccccCCCCCCceEec----ccCc--cchhHHHHHHhcCCCCCCCCc
Q 027652 160 APTFSCPICMGPLSEATSTK----CGHI--FCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~----CgH~--fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
+..-.||+|-..+...++.. =|-. -|.-|...|.....+|--|..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccc
Confidence 34458999998877664432 2322 399999999988778888854
No 180
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.42 E-value=42 Score=31.52 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=22.9
Q ss_pred CccccccCCCCCCc--eEecccCccchhHHHHHH
Q 027652 162 TFSCPICMGPLSEA--TSTKCGHIFCKDCIKGAI 193 (220)
Q Consensus 162 ~~~CpIC~~~~~~p--v~l~CgH~fC~~Ci~~~l 193 (220)
+..||||+-.+... .+.-|....|..|+.++-
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheeccc
Confidence 35899999765543 233688889999986654
No 181
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=54 Score=32.76 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=27.2
Q ss_pred ccccccCCCCC----CceEecccCccchhHHHHHHhcCCCCCCCCc
Q 027652 163 FSCPICMGPLS----EATSTKCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 163 ~~CpIC~~~~~----~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
-.|-+|..+-. -+.++.|+..||..|...+ ...|++|.-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~---~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY---ASISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhh---hccCcccCc
Confidence 37888876433 2345689999999996554 557888843
No 182
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.01 E-value=34 Score=19.15 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=5.9
Q ss_pred CCCCCCcccc
Q 027652 198 KCPNCRQKVG 207 (220)
Q Consensus 198 ~CP~Cr~~v~ 207 (220)
.||+|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 4666666553
No 183
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.90 E-value=46 Score=31.89 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=5.9
Q ss_pred CccccccCCCCC
Q 027652 162 TFSCPICMGPLS 173 (220)
Q Consensus 162 ~~~CpIC~~~~~ 173 (220)
.+.||-|+..+.
T Consensus 26 ~~yCp~CL~~~p 37 (483)
T PF05502_consen 26 SYYCPNCLFEVP 37 (483)
T ss_pred eeECccccccCC
Confidence 445555554443
No 184
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.27 E-value=59 Score=21.16 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=5.4
Q ss_pred cCCCCCCC
Q 027652 195 AQGKCPNC 202 (220)
Q Consensus 195 ~~~~CP~C 202 (220)
....||.|
T Consensus 48 ~~~~CP~C 55 (55)
T PF14311_consen 48 RGKGCPYC 55 (55)
T ss_pred CCCCCCCC
Confidence 45578877
No 185
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.18 E-value=56 Score=24.90 Aligned_cols=40 Identities=25% Similarity=0.635 Sum_probs=22.5
Q ss_pred cccccCCCCC---Cc--eEecccCccchhHHHHHHhcCC--CCCCCCc
Q 027652 164 SCPICMGPLS---EA--TSTKCGHIFCKDCIKGAIAAQG--KCPNCRQ 204 (220)
Q Consensus 164 ~CpIC~~~~~---~p--v~l~CgH~fC~~Ci~~~l~~~~--~CP~Cr~ 204 (220)
.|.+|...|. +. +-..|+|.+|..|-.. ..... .|-+|.+
T Consensus 56 ~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 56 HCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp B-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred chhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 7999976442 22 2337999999999543 11111 4777644
Done!