Query 027652
Match_columns 220
No_of_seqs 253 out of 1972
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.5 3.5E-15 1.2E-19 103.3 3.1 58 159-216 7-71 (71)
2 2xeu_A Ring finger protein 4; 99.5 8.1E-15 2.8E-19 99.2 3.2 56 161-216 2-64 (64)
3 1t1h_A Gspef-atpub14, armadill 99.5 6.8E-14 2.3E-18 98.8 5.7 57 159-215 5-62 (78)
4 2d8t_A Dactylidin, ring finger 99.4 3.5E-14 1.2E-18 98.8 3.4 57 158-214 11-67 (71)
5 2djb_A Polycomb group ring fin 99.4 1.5E-13 5.2E-18 95.8 6.6 56 159-214 12-68 (72)
6 2ecw_A Tripartite motif-contai 99.4 3.2E-13 1.1E-17 96.0 7.8 59 159-217 16-80 (85)
7 2ecy_A TNF receptor-associated 99.4 1.9E-13 6.7E-18 93.6 5.4 53 159-211 12-65 (66)
8 2ecv_A Tripartite motif-contai 99.4 4.1E-13 1.4E-17 95.4 7.0 58 159-216 16-79 (85)
9 2ysl_A Tripartite motif-contai 99.4 3.4E-13 1.2E-17 93.8 6.3 53 159-211 17-72 (73)
10 2yur_A Retinoblastoma-binding 99.4 2.4E-13 8.3E-18 95.4 5.5 51 158-208 11-64 (74)
11 2ct2_A Tripartite motif protei 99.4 3.3E-13 1.1E-17 96.9 5.6 55 158-212 11-72 (88)
12 2kr4_A Ubiquitin conjugation f 99.4 3.3E-13 1.1E-17 97.7 5.6 56 159-214 11-66 (85)
13 3lrq_A E3 ubiquitin-protein li 99.4 1.3E-13 4.4E-18 102.4 3.0 57 160-216 20-78 (100)
14 1g25_A CDK-activating kinase a 99.4 2.6E-13 8.9E-18 92.7 4.1 57 161-217 2-64 (65)
15 2egp_A Tripartite motif-contai 99.4 1.2E-13 4E-18 97.5 2.2 58 159-216 9-73 (79)
16 1wgm_A Ubiquitin conjugation f 99.4 7.4E-13 2.5E-17 98.5 6.1 57 159-215 19-76 (98)
17 2kre_A Ubiquitin conjugation f 99.4 7.2E-13 2.5E-17 98.8 5.7 57 159-215 26-82 (100)
18 3ztg_A E3 ubiquitin-protein li 99.4 5.9E-13 2E-17 96.8 4.9 55 159-213 10-68 (92)
19 2csy_A Zinc finger protein 183 99.3 1.2E-12 4.2E-17 93.1 6.3 49 159-207 12-60 (81)
20 2ea6_A Ring finger protein 4; 99.3 6.1E-13 2.1E-17 91.1 4.5 50 159-208 12-68 (69)
21 2ect_A Ring finger protein 126 99.3 2.6E-12 8.8E-17 90.6 6.1 56 159-214 12-70 (78)
22 4ap4_A E3 ubiquitin ligase RNF 99.3 9.4E-13 3.2E-17 100.8 3.7 59 160-218 5-70 (133)
23 2ecn_A Ring finger protein 141 99.3 9.2E-13 3.1E-17 91.0 3.0 56 159-215 12-67 (70)
24 4ayc_A E3 ubiquitin-protein li 99.3 9.9E-13 3.4E-17 102.9 3.4 47 162-208 53-99 (138)
25 2y43_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 96.2 3.8 54 161-214 21-75 (99)
26 2ysj_A Tripartite motif-contai 99.3 5.4E-12 1.8E-16 85.4 6.3 44 159-202 17-63 (63)
27 3fl2_A E3 ubiquitin-protein li 99.3 2E-12 6.7E-17 99.2 4.0 48 161-208 51-99 (124)
28 1jm7_A BRCA1, breast cancer ty 99.3 3.3E-12 1.1E-16 95.7 4.6 55 161-215 20-77 (112)
29 2ckl_A Polycomb group ring fin 99.3 2.6E-12 8.9E-17 96.3 4.0 50 160-209 13-63 (108)
30 2vje_A E3 ubiquitin-protein li 99.3 3.6E-12 1.2E-16 87.3 4.1 57 159-217 5-64 (64)
31 4ap4_A E3 ubiquitin ligase RNF 99.2 2E-12 7E-17 98.9 2.7 57 160-216 70-133 (133)
32 2ecm_A Ring finger and CHY zin 99.2 6E-12 2E-16 82.7 4.5 48 160-207 3-54 (55)
33 3hct_A TNF receptor-associated 99.2 3.4E-12 1.2E-16 97.2 3.7 56 158-213 14-70 (118)
34 1chc_A Equine herpes virus-1 r 99.2 8.1E-12 2.8E-16 85.6 5.1 47 161-207 4-51 (68)
35 1iym_A EL5; ring-H2 finger, ub 99.2 6.5E-12 2.2E-16 82.6 3.9 48 160-207 3-54 (55)
36 1x4j_A Ring finger protein 38; 99.2 9.6E-12 3.3E-16 87.1 4.6 49 160-208 21-72 (75)
37 2kiz_A E3 ubiquitin-protein li 99.2 1.7E-11 5.6E-16 84.4 5.6 50 159-208 11-63 (69)
38 2yu4_A E3 SUMO-protein ligase 99.2 7E-12 2.4E-16 92.1 4.0 56 159-214 4-69 (94)
39 2ecj_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 81.8 4.6 44 159-202 12-58 (58)
40 2c2l_A CHIP, carboxy terminus 99.2 8.6E-12 2.9E-16 106.6 4.7 56 159-214 205-261 (281)
41 1z6u_A NP95-like ring finger p 99.2 7.8E-12 2.7E-16 99.6 4.1 49 161-209 77-126 (150)
42 2ep4_A Ring finger protein 24; 99.2 1.8E-11 6.3E-16 85.3 5.0 50 159-208 12-64 (74)
43 3l11_A E3 ubiquitin-protein li 99.2 3E-12 1E-16 96.9 0.4 50 159-208 12-62 (115)
44 1rmd_A RAG1; V(D)J recombinati 99.2 1.2E-11 4E-16 93.7 3.6 54 160-213 21-75 (116)
45 2l0b_A E3 ubiquitin-protein li 99.2 1.5E-11 5.1E-16 89.7 3.9 49 160-208 38-89 (91)
46 1jm7_B BARD1, BRCA1-associated 99.1 7.4E-12 2.5E-16 95.2 1.7 53 160-214 20-73 (117)
47 2ckl_B Ubiquitin ligase protei 99.1 2.5E-11 8.7E-16 97.4 4.2 50 159-208 51-102 (165)
48 2vje_B MDM4 protein; proto-onc 99.1 2.4E-11 8.1E-16 83.0 3.1 55 160-216 5-62 (63)
49 2f42_A STIP1 homology and U-bo 99.1 3.2E-11 1.1E-15 98.9 4.3 57 159-215 103-160 (179)
50 4ic3_A E3 ubiquitin-protein li 99.1 1.4E-11 4.6E-16 86.7 1.6 50 161-216 23-73 (74)
51 1bor_A Transcription factor PM 99.1 1.7E-11 6E-16 81.6 2.1 46 160-208 4-49 (56)
52 1e4u_A Transcriptional repress 99.1 8.9E-11 3.1E-15 83.7 5.3 56 159-214 8-68 (78)
53 2bay_A PRE-mRNA splicing facto 99.1 5.8E-11 2E-15 80.8 3.5 56 162-217 3-59 (61)
54 1v87_A Deltex protein 2; ring- 99.1 6.2E-11 2.1E-15 89.2 3.7 47 162-208 25-94 (114)
55 3hcs_A TNF receptor-associated 99.1 5.8E-11 2E-15 95.6 3.7 55 159-213 15-70 (170)
56 3knv_A TNF receptor-associated 99.1 2.6E-11 9E-16 95.6 1.6 49 159-207 28-77 (141)
57 2ecl_A Ring-box protein 2; RNF 99.1 1.5E-10 5E-15 82.7 5.2 52 160-211 13-79 (81)
58 2ecg_A Baculoviral IAP repeat- 99.0 9.2E-11 3.1E-15 82.4 2.7 50 161-216 24-74 (75)
59 2ea5_A Cell growth regulator w 99.0 5.5E-10 1.9E-14 77.4 6.4 54 159-218 12-66 (68)
60 2yho_A E3 ubiquitin-protein li 99.0 1.8E-10 6E-15 82.2 2.5 52 162-219 18-70 (79)
61 2y1n_A E3 ubiquitin-protein li 98.9 3.6E-10 1.2E-14 102.6 3.7 50 162-211 332-382 (389)
62 3dpl_R Ring-box protein 1; ubi 98.9 9E-10 3.1E-14 82.9 3.8 47 162-208 37-101 (106)
63 3htk_C E3 SUMO-protein ligase 98.9 9E-10 3.1E-14 95.0 3.1 56 159-214 178-238 (267)
64 3t6p_A Baculoviral IAP repeat- 98.7 2.7E-09 9.1E-14 95.6 1.5 50 161-216 294-344 (345)
65 4a0k_B E3 ubiquitin-protein li 98.6 4.5E-09 1.5E-13 80.5 0.6 47 163-209 49-113 (117)
66 1wim_A KIAA0161 protein; ring 98.6 4.5E-09 1.5E-13 76.7 0.5 54 160-213 3-71 (94)
67 2d8s_A Cellular modulator of i 98.5 8.5E-08 2.9E-12 68.5 4.8 50 160-209 13-71 (80)
68 2ct0_A Non-SMC element 1 homol 98.3 1.4E-06 4.9E-11 61.2 5.9 48 160-207 13-63 (74)
69 3vk6_A E3 ubiquitin-protein li 97.9 8.3E-06 2.9E-10 60.3 3.3 45 164-208 3-49 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.7 8.1E-06 2.8E-10 72.9 1.9 49 160-208 306-373 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.7 2.6E-05 8.9E-10 52.4 3.8 49 160-208 4-59 (60)
72 3nw0_A Non-structural maintena 96.4 0.0025 8.5E-08 54.0 4.2 47 162-208 180-229 (238)
73 3m62_A Ubiquitin conjugation f 95.9 0.0053 1.8E-07 61.2 4.1 55 160-214 889-944 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.0048 1.6E-07 44.7 2.0 32 161-192 2-36 (101)
75 2ko5_A Ring finger protein Z; 95.1 0.0058 2E-07 44.5 1.1 48 159-208 25-73 (99)
76 2cs3_A Protein C14ORF4, MY039 93.3 0.055 1.9E-06 38.3 2.9 37 159-195 12-52 (93)
77 3i2d_A E3 SUMO-protein ligase 87.5 0.45 1.6E-05 42.6 4.0 52 161-212 248-304 (371)
78 4fo9_A E3 SUMO-protein ligase 85.8 0.63 2.1E-05 41.5 4.0 52 161-212 214-270 (360)
79 1m3v_A FLIN4, fusion of the LI 80.3 1 3.4E-05 33.3 2.6 50 162-211 32-84 (122)
80 3t7l_A Zinc finger FYVE domain 75.9 1.4 4.7E-05 31.3 2.2 49 159-207 17-75 (90)
81 1z2q_A LM5-1; membrane protein 75.8 2 7E-05 29.9 3.0 34 158-191 17-54 (84)
82 1y02_A CARP2, FYVE-ring finger 73.0 0.23 8E-06 37.6 -2.7 46 159-204 16-65 (120)
83 1x4u_A Zinc finger, FYVE domai 71.1 2.7 9.4E-05 29.2 2.7 32 159-190 11-46 (84)
84 2yw8_A RUN and FYVE domain-con 71.0 1.7 5.7E-05 30.2 1.5 33 159-191 16-52 (82)
85 3mpx_A FYVE, rhogef and PH dom 68.4 1 3.6E-05 40.1 0.0 49 159-207 372-431 (434)
86 1joc_A EEA1, early endosomal a 68.2 1.8 6E-05 32.6 1.3 31 161-191 68-102 (125)
87 1vfy_A Phosphatidylinositol-3- 64.6 3.1 0.00011 28.1 1.8 29 162-190 11-43 (73)
88 1wil_A KIAA1045 protein; ring 64.5 6.7 0.00023 27.8 3.5 32 160-192 13-47 (89)
89 1wfk_A Zinc finger, FYVE domai 63.5 3.4 0.00012 29.2 1.9 32 160-191 7-42 (88)
90 2xjy_A Rhombotin-2; oncoprotei 61.8 6.1 0.00021 29.0 3.2 49 161-209 28-79 (131)
91 3mjh_B Early endosome antigen 61.5 1.4 4.9E-05 25.8 -0.3 15 161-175 4-18 (34)
92 2xqn_T Testin, TESS; metal-bin 60.6 10 0.00034 27.6 4.2 47 161-209 29-76 (126)
93 1wd2_A Ariadne-1 protein homol 60.6 1.4 4.8E-05 29.0 -0.5 32 163-194 7-46 (60)
94 2rgt_A Fusion of LIM/homeobox 60.1 11 0.00037 29.1 4.6 48 161-210 32-79 (169)
95 1x64_A Alpha-actinin-2 associa 59.9 16 0.00056 24.8 5.0 42 161-210 24-65 (89)
96 2lri_C Autoimmune regulator; Z 59.3 8.6 0.0003 25.5 3.3 43 162-206 12-60 (66)
97 1rut_X Flinc4, fusion protein 59.0 3.5 0.00012 32.7 1.5 49 161-209 31-82 (188)
98 2d8v_A Zinc finger FYVE domain 59.0 6 0.0002 26.7 2.4 34 160-194 6-40 (67)
99 2fiy_A Protein FDHE homolog; F 58.3 2.7 9.3E-05 36.6 0.8 46 160-205 180-231 (309)
100 1x62_A C-terminal LIM domain p 56.9 8.8 0.0003 25.6 3.1 38 162-207 15-52 (79)
101 1dvp_A HRS, hepatocyte growth 56.7 3.9 0.00013 33.4 1.4 32 160-191 159-194 (220)
102 3zyq_A Hepatocyte growth facto 56.1 7.3 0.00025 32.0 3.0 31 161-191 163-197 (226)
103 2jtn_A LIM domain-binding prot 55.4 9.9 0.00034 29.7 3.6 47 161-209 86-132 (182)
104 2cup_A Skeletal muscle LIM-pro 51.5 11 0.00038 26.2 3.0 48 161-210 32-80 (101)
105 1z60_A TFIIH basal transcripti 51.5 7.1 0.00024 25.6 1.8 39 164-202 17-58 (59)
106 2k16_A Transcription initiatio 51.3 2.9 9.9E-05 28.2 -0.2 49 160-208 16-71 (75)
107 2ct7_A Ring finger protein 31; 50.5 16 0.00054 25.2 3.6 29 164-192 27-61 (86)
108 2l5u_A Chromodomain-helicase-D 49.9 7.1 0.00024 25.4 1.6 44 159-204 8-57 (61)
109 1wff_A Riken cDNA 2810002D23 p 49.5 27 0.00094 24.5 4.7 30 159-188 22-53 (85)
110 2co8_A NEDD9 interacting prote 47.4 25 0.00084 23.6 4.2 43 160-210 13-56 (82)
111 2dar_A PDZ and LIM domain prot 46.9 19 0.00066 24.5 3.6 38 163-208 26-63 (90)
112 1weo_A Cellulose synthase, cat 42.2 42 0.0014 23.9 4.7 46 162-207 16-69 (93)
113 1f62_A Transcription factor WS 41.7 8.7 0.0003 23.7 1.0 41 164-204 2-49 (51)
114 2jrp_A Putative cytoplasmic pr 41.0 1.2 4.2E-05 31.3 -3.4 21 197-217 52-72 (81)
115 2jne_A Hypothetical protein YF 39.1 1.2 4.2E-05 32.4 -3.8 40 163-207 33-72 (101)
116 1mm2_A MI2-beta; PHD, zinc fin 38.9 11 0.00036 24.5 1.1 46 160-207 7-58 (61)
117 2jmo_A Parkin; IBR, E3 ligase, 37.2 2.7 9.3E-05 29.0 -2.2 16 179-194 55-70 (80)
118 2gmg_A Hypothetical protein PF 36.9 8.7 0.0003 28.2 0.4 25 179-208 72-96 (105)
119 2jr6_A UPF0434 protein NMA0874 36.0 6.1 0.00021 26.6 -0.5 45 159-219 5-49 (68)
120 1v6g_A Actin binding LIM prote 35.8 21 0.00073 23.7 2.3 37 164-208 17-53 (81)
121 2d8x_A Protein pinch; LIM doma 35.6 25 0.00087 22.5 2.6 30 163-192 32-62 (70)
122 1x4w_A Hypothetical protein FL 34.8 20 0.0007 24.1 2.0 29 159-187 12-44 (67)
123 1wen_A Inhibitor of growth fam 33.8 60 0.0021 21.6 4.3 44 160-207 14-67 (71)
124 1x61_A Thyroid receptor intera 33.3 41 0.0014 21.5 3.4 33 162-194 33-66 (72)
125 1wyh_A SLIM 2, skeletal muscle 33.2 28 0.00097 22.3 2.6 30 163-192 34-64 (72)
126 2lv9_A Histone-lysine N-methyl 33.2 18 0.0006 25.8 1.6 44 160-204 26-75 (98)
127 2l43_A N-teminal domain from h 33.1 18 0.00062 25.2 1.6 54 159-212 22-82 (88)
128 1weu_A Inhibitor of growth fam 32.9 68 0.0023 22.6 4.6 44 160-207 34-87 (91)
129 1iml_A CRIP, cysteine rich int 32.0 50 0.0017 21.4 3.7 45 161-207 26-72 (76)
130 1x4k_A Skeletal muscle LIM-pro 31.0 40 0.0014 21.5 3.1 28 163-190 34-62 (72)
131 2lbm_A Transcriptional regulat 30.8 41 0.0014 25.7 3.4 44 161-204 62-116 (142)
132 3fyb_A Protein of unknown func 30.5 20 0.00068 26.0 1.4 12 183-194 41-52 (104)
133 2o35_A Hypothetical protein DU 30.5 20 0.00068 26.1 1.4 12 184-195 43-54 (105)
134 1nyp_A Pinch protein; LIM doma 30.2 25 0.00087 22.2 1.9 28 163-190 32-60 (66)
135 2d8z_A Four and A half LIM dom 30.1 31 0.0011 22.0 2.3 31 162-192 31-62 (70)
136 2cor_A Pinch protein; LIM doma 29.0 56 0.0019 21.6 3.6 27 163-189 42-68 (79)
137 2cu8_A Cysteine-rich protein 2 29.0 55 0.0019 21.2 3.5 25 164-188 11-36 (76)
138 1x68_A FHL5 protein; four-and- 28.5 40 0.0014 22.0 2.7 10 164-173 7-16 (76)
139 1b8t_A Protein (CRP1); LIM dom 28.3 60 0.002 25.3 4.1 34 161-194 33-67 (192)
140 2cur_A Skeletal muscle LIM-pro 28.2 32 0.0011 21.9 2.1 31 162-192 31-62 (69)
141 1x63_A Skeletal muscle LIM-pro 28.0 43 0.0015 22.0 2.8 29 163-191 44-73 (82)
142 3o36_A Transcription intermedi 27.8 13 0.00045 29.2 0.1 44 162-207 4-53 (184)
143 4gut_A Lysine-specific histone 27.1 32 0.0011 33.4 2.7 32 163-194 14-55 (776)
144 1wfh_A Zinc finger (AN1-like) 27.1 62 0.0021 21.4 3.3 29 159-187 12-41 (64)
145 1x4l_A Skeletal muscle LIM-pro 26.9 34 0.0012 22.0 2.1 10 163-172 36-45 (72)
146 1xwh_A Autoimmune regulator; P 26.9 7.9 0.00027 25.5 -1.2 46 160-207 6-57 (66)
147 1wfp_A Zinc finger (AN1-like) 26.9 67 0.0023 21.9 3.5 29 159-187 22-51 (74)
148 1wig_A KIAA1808 protein; LIM d 26.2 49 0.0017 21.5 2.8 32 161-192 30-63 (73)
149 2jny_A Uncharacterized BCR; st 25.5 11 0.00036 25.4 -0.7 44 160-219 8-51 (67)
150 2cuq_A Four and A half LIM dom 24.6 43 0.0015 21.9 2.3 30 163-192 42-72 (80)
151 1fp0_A KAP-1 corepressor; PHD 24.5 30 0.001 24.3 1.5 45 160-206 23-73 (88)
152 2pk7_A Uncharacterized protein 23.2 6.8 0.00023 26.5 -2.1 44 160-219 6-49 (69)
153 2js4_A UPF0434 protein BB2007; 23.0 7 0.00024 26.5 -2.0 45 159-219 5-49 (70)
154 2dlo_A Thyroid receptor-intera 23.0 36 0.0012 22.5 1.6 29 163-191 42-72 (81)
155 1x3h_A Leupaxin; paxillin fami 22.9 40 0.0014 22.1 1.9 29 163-191 42-71 (80)
156 1zbd_B Rabphilin-3A; G protein 22.3 24 0.00082 26.7 0.6 28 163-190 56-88 (134)
157 2ro1_A Transcription intermedi 22.0 21 0.0007 28.5 0.2 43 164-206 4-50 (189)
158 2pv0_B DNA (cytosine-5)-methyl 21.9 48 0.0017 29.6 2.6 44 162-205 93-148 (386)
159 3vth_A Hydrogenase maturation 21.1 37 0.0013 33.0 1.8 46 161-206 110-193 (761)
160 1wg2_A Zinc finger (AN1-like) 21.0 1E+02 0.0036 20.3 3.5 28 160-187 13-41 (64)
161 1x6a_A LIMK-2, LIM domain kina 20.7 43 0.0015 22.0 1.7 33 161-193 40-75 (81)
162 3u5n_A E3 ubiquitin-protein li 20.6 19 0.00063 29.0 -0.3 45 161-207 6-56 (207)
163 1wfl_A Zinc finger protein 216 20.2 1.4E+02 0.0047 20.3 4.1 28 160-187 23-51 (74)
164 3ql9_A Transcriptional regulat 20.2 79 0.0027 23.7 3.2 43 162-204 57-110 (129)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=3.5e-15 Score=103.28 Aligned_cols=58 Identities=40% Similarity=1.025 Sum_probs=53.7
Q ss_pred CCCCccccccCCCCCCc-------eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLSEA-------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p-------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
..+.+.|+||++.+.++ +.++|||+||..|+.+|+.....||+||+.+..++++++||
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 45677999999999887 88899999999999999999999999999999999999997
No 2
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=8.1e-15 Score=99.22 Aligned_cols=56 Identities=39% Similarity=1.046 Sum_probs=52.0
Q ss_pred CCccccccCCCCCCc-------eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 161 PTFSCPICMGPLSEA-------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p-------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
+.+.|+||++.+.++ +.++|||.||..|+.+|+.....||+||+.+..++++++||
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 456899999999876 78899999999999999999889999999999999999997
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=6.8e-14 Score=98.78 Aligned_cols=57 Identities=19% Similarity=0.469 Sum_probs=51.1
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc-CCCCCCCCccccCCCceeec
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~iy 215 (220)
..+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||+|++.+...++.+.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 4567899999999999999999999999999999986 67899999999887777654
No 4
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=98.83 Aligned_cols=57 Identities=28% Similarity=0.574 Sum_probs=50.5
Q ss_pred CCCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
...+.+.|+||++.+.+++.++|||+||..||.+|+.....||+||+.+...++.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 356678999999999999999999999999999999888899999999987665543
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=95.81 Aligned_cols=56 Identities=34% Similarity=0.704 Sum_probs=50.7
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
..+.+.|+||++.+.+|+.+ +|||+||..||.+|+.....||+||+.+...++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 46678999999999999987 999999999999999988899999999998777654
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=3.2e-13 Score=96.00 Aligned_cols=59 Identities=31% Similarity=0.676 Sum_probs=52.6
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc------CCCCCCCCccccCCCceeecCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA------QGKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~------~~~CP~Cr~~v~~~~l~~iylp 217 (220)
..+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+...++.+.+.-
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 4567899999999999999999999999999999987 5689999999998888877653
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=93.59 Aligned_cols=53 Identities=26% Similarity=0.746 Sum_probs=47.5
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHh-cCCCCCCCCccccCCCc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA-AQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~-~~~~CP~Cr~~v~~~~l 211 (220)
..+.+.|+||++.+.+|+.++|||+||..|+.+|+. ....||+||+.+..+++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 456789999999999999999999999999999995 45689999999988765
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-13 Score=95.42 Aligned_cols=58 Identities=29% Similarity=0.700 Sum_probs=51.7
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc------CCCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA------QGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~------~~~CP~Cr~~v~~~~l~~iyl 216 (220)
..+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+...++.+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 4567899999999999999999999999999999987 678999999999887776654
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=93.77 Aligned_cols=53 Identities=36% Similarity=0.770 Sum_probs=47.2
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHh---cCCCCCCCCccccCCCc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA---AQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~---~~~~CP~Cr~~v~~~~l 211 (220)
..+.+.|+||++.+.+|+.++|||+||..|+.+|+. ....||+||+.+..+++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 566789999999999999999999999999999996 34589999999987665
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=95.43 Aligned_cols=51 Identities=27% Similarity=0.740 Sum_probs=45.4
Q ss_pred CCCCCccccccCCCCCCceEec-ccCccchhHHHHHHhcC--CCCCCCCccccC
Q 027652 158 AAAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQ--GKCPNCRQKVGK 208 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l~-CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v~~ 208 (220)
...+.+.|+||++.+.+|+.++ |||+||..||..|+... ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3567789999999999999999 99999999999999865 589999998654
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=96.91 Aligned_cols=55 Identities=29% Similarity=0.779 Sum_probs=48.1
Q ss_pred CCCCCccccccCCCCCC----ceEecccCccchhHHHHHHhcC---CCCCCCCccccCCCce
Q 027652 158 AAAPTFSCPICMGPLSE----ATSTKCGHIFCKDCIKGAIAAQ---GKCPNCRQKVGKRGIF 212 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~----pv~l~CgH~fC~~Ci~~~l~~~---~~CP~Cr~~v~~~~l~ 212 (220)
...+.+.|+||++.+.+ ++.++|||+||..|+.+|+... ..||+||+.+...++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence 35667899999999998 9999999999999999999875 6899999999876543
No 12
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.39 E-value=3.3e-13 Score=97.69 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=51.3
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
..+.+.||||++.+.+||+++|||+||..||.+|+.....||.|+.++...+|++.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 45688999999999999999999999999999999988899999999998777764
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=102.44 Aligned_cols=57 Identities=32% Similarity=0.737 Sum_probs=51.3
Q ss_pred CCCccccccCCCCCCceE-ecccCccchhHHHHHHhcC-CCCCCCCccccCCCceeecC
Q 027652 160 APTFSCPICMGPLSEATS-TKCGHIFCKDCIKGAIAAQ-GKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~-l~CgH~fC~~Ci~~~l~~~-~~CP~Cr~~v~~~~l~~iyl 216 (220)
.+.+.|+||++.+.+|+. ++|||+||..||.+|+... ..||+||..+...++++.++
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHH
Confidence 456799999999999999 9999999999999999987 69999999999888877654
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=2.6e-13 Score=92.68 Aligned_cols=57 Identities=23% Similarity=0.621 Sum_probs=49.3
Q ss_pred CCccccccCC-CCCCc----eEecccCccchhHHHHHHhc-CCCCCCCCccccCCCceeecCC
Q 027652 161 PTFSCPICMG-PLSEA----TSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 161 ~~~~CpIC~~-~~~~p----v~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~iylp 217 (220)
+++.|+||++ .+.++ +.++|||+||..|+.+|+.. ...||+||+.+..+++++.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 3568999999 78877 46799999999999999664 4579999999999999998875
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=97.46 Aligned_cols=58 Identities=28% Similarity=0.630 Sum_probs=50.9
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc-------CCCCCCCCccccCCCceeecC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-------QGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~-------~~~CP~Cr~~v~~~~l~~iyl 216 (220)
..+.+.|+||++.+.+|+.++|||+||..|+.+|+.. ...||+||..+...++.+.+.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 4567899999999999999999999999999999876 458999999998877776654
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=7.4e-13 Score=98.46 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=51.9
Q ss_pred CCCCccccccCCCCCCceEeccc-CccchhHHHHHHhcCCCCCCCCccccCCCceeec
Q 027652 159 AAPTFSCPICMGPLSEATSTKCG-HIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~Cg-H~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iy 215 (220)
..+.+.||||++++.+||+++|| |+||..||.+|+.....||+|+.++...+|++.+
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcH
Confidence 45689999999999999999999 9999999999998888999999999988877653
No 17
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.35 E-value=7.2e-13 Score=98.84 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeec
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iy 215 (220)
..+.+.||||++.+.+||+++|||+||..||.+|+.....||.|+.++...+|++.+
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 456889999999999999999999999999999998888999999999988877653
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-13 Score=96.78 Aligned_cols=55 Identities=25% Similarity=0.724 Sum_probs=47.0
Q ss_pred CCCCccccccCCCCCCceEec-ccCccchhHHHHHHhcC--CCCCCCCccc-cCCCcee
Q 027652 159 AAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQ--GKCPNCRQKV-GKRGIFR 213 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~-CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v-~~~~l~~ 213 (220)
..+.+.|+||++.+.+|++++ |||+||..||..|+... ..||+||..+ ...++..
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEE
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCc
Confidence 567889999999999999999 99999999999998754 4899999997 4445544
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=93.08 Aligned_cols=49 Identities=33% Similarity=0.718 Sum_probs=45.5
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
....+.|+||++.+.+|+.++|||+||..||.+|+.....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999999999999999999999999998889999999986
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.1e-13 Score=91.13 Aligned_cols=50 Identities=44% Similarity=1.097 Sum_probs=45.2
Q ss_pred CCCCccccccCCCCCCc-------eEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEA-------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p-------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
..+.+.|+||++.+.++ +.++|||+||..||.+|+.....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45678999999999887 888999999999999999998899999998864
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=2.6e-12 Score=90.55 Aligned_cols=56 Identities=21% Similarity=0.600 Sum_probs=47.9
Q ss_pred CCCCccccccCCCCCCc---eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 159 AAPTFSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
......|+||++.+..+ +.++|||.||..||.+|+.....||+||+.+...++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 45677999999988765 456999999999999999988899999999988776653
No 22
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=9.4e-13 Score=100.83 Aligned_cols=59 Identities=39% Similarity=1.005 Sum_probs=54.5
Q ss_pred CCCccccccCCCCCCc-------eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCC
Q 027652 160 APTFSCPICMGPLSEA-------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPT 218 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p-------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~ 218 (220)
.+.+.|+||++.+.++ +.++|||+||..||.+|++....||+||+.+..+++.++|+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~ 70 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS 70 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCC
Confidence 4567999999999988 8999999999999999999888999999999999999998864
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=9.2e-13 Score=91.02 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=48.4
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeec
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iy 215 (220)
..+.+.|+||++.+.+ +.++|||.||..|+.+|+.....||+||+.+...+...++
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccC
Confidence 4556799999999999 8999999999999999998888999999999866554443
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=9.9e-13 Score=102.95 Aligned_cols=47 Identities=32% Similarity=0.770 Sum_probs=43.9
Q ss_pred CccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.+.|+||++.+.+|++++|||+||..||..|+.....||+||+.+..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999999999999999999999999999988899999999864
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=96.23 Aligned_cols=54 Identities=24% Similarity=0.605 Sum_probs=48.6
Q ss_pred CCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 161 PTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
+.+.|+||++.+.+|+.+ +|||+||..|+.+|+.....||+||..+...++.+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcC
Confidence 467999999999999988 899999999999999988899999999987666654
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.4e-12 Score=85.43 Aligned_cols=44 Identities=36% Similarity=0.828 Sum_probs=39.9
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc---CCCCCCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA---QGKCPNC 202 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~---~~~CP~C 202 (220)
..+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5677899999999999999999999999999999983 4589998
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=99.25 Aligned_cols=48 Identities=38% Similarity=0.841 Sum_probs=43.6
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCccccC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGK 208 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~~ 208 (220)
+.+.|+||++.+.+|++++|||+||..||..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4568999999999999999999999999999998544 89999999976
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.3e-12 Score=95.67 Aligned_cols=55 Identities=36% Similarity=0.861 Sum_probs=48.3
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCC---CCCCCCccccCCCceeec
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG---KCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~---~CP~Cr~~v~~~~l~~iy 215 (220)
+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+...++...+
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 3458999999999999999999999999999998653 899999999987776654
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=2.6e-12 Score=96.26 Aligned_cols=50 Identities=36% Similarity=0.786 Sum_probs=46.1
Q ss_pred CCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 160 APTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
.+.+.|+||++.+.+|+.+ +|||+||..||..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567999999999999998 9999999999999999888999999998864
No 30
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.25 E-value=3.6e-12 Score=87.35 Aligned_cols=57 Identities=32% Similarity=0.621 Sum_probs=50.8
Q ss_pred CCCCccccccCCCCCCceEe--cccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecCC
Q 027652 159 AAPTFSCPICMGPLSEATST--KCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l--~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp 217 (220)
..++..|+||++.+.+++.+ +|||. ||..|+.+|......||+||+++. .++++|+|
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~~ 64 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTYFP 64 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEECC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeeecC
Confidence 34566899999999999987 99999 899999999988889999999986 68999985
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2e-12 Score=98.93 Aligned_cols=57 Identities=40% Similarity=1.041 Sum_probs=52.7
Q ss_pred CCCccccccCCCCCCc-------eEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 160 APTFSCPICMGPLSEA-------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p-------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
.+...|+||++.+.++ +.++|||+||..|+.+|+.....||+||..+..++++++||
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 4566899999998876 88899999999999999999999999999999999999997
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.24 E-value=6e-12 Score=82.67 Aligned_cols=48 Identities=25% Similarity=0.710 Sum_probs=42.2
Q ss_pred CCCccccccCCCCCC----ceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSE----ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~----pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
.....|+||++.+.+ ++.++|||.||..|+.+|+.....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345689999999865 678899999999999999998899999998874
No 33
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.24 E-value=3.4e-12 Score=97.22 Aligned_cols=56 Identities=39% Similarity=0.836 Sum_probs=49.5
Q ss_pred CCCCCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCccccCCCcee
Q 027652 158 AAAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKRGIFR 213 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~~~~l~~ 213 (220)
...+.+.|+||++.+.+|+.++|||+||..||.+|+.... .||+||..+...++++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 3567789999999999999999999999999999998765 9999999998766654
No 34
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=8.1e-12 Score=85.62 Aligned_cols=47 Identities=34% Similarity=0.694 Sum_probs=42.8
Q ss_pred CCccccccCCCCCCc-eEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSEA-TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
....|+||++.+.++ +.++|||.||..|+.+|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 455899999999986 77899999999999999998899999999886
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.22 E-value=6.5e-12 Score=82.59 Aligned_cols=48 Identities=29% Similarity=0.725 Sum_probs=42.3
Q ss_pred CCCccccccCCCCCC---ceEec-ccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSE---ATSTK-CGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~---pv~l~-CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
++...|+||++.+.+ ++.++ |||.||..|+.+|++....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456689999999887 67776 9999999999999998889999998774
No 36
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=9.6e-12 Score=87.14 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=43.6
Q ss_pred CCCccccccCCCCCCc---eEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSEA---TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.+...|+||++.+..+ +.++|||.||..||.+|++....||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899999988876 678999999999999999999999999998864
No 37
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=84.38 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=43.1
Q ss_pred CCCCccccccCCCCC---CceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLS---EATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~---~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
......|+||++.+. .++.++|||.||..||.+|+.....||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 445678999999875 35778999999999999999988899999998864
No 38
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=7e-12 Score=92.14 Aligned_cols=56 Identities=27% Similarity=0.685 Sum_probs=48.1
Q ss_pred CCCCccccccCCCCCCceEec-ccCccchhHHHHHHhcC------CCCCC--CCcc-ccCCCceee
Q 027652 159 AAPTFSCPICMGPLSEATSTK-CGHIFCKDCIKGAIAAQ------GKCPN--CRQK-VGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~-CgH~fC~~Ci~~~l~~~------~~CP~--Cr~~-v~~~~l~~i 214 (220)
..+.+.||||++.|.+||+++ |||+||..||.+|+... ..||+ |+.. +...+|++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 456789999999999999996 99999999999999853 48999 8877 777777654
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=81.81 Aligned_cols=44 Identities=36% Similarity=0.785 Sum_probs=38.9
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHh---cCCCCCCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA---AQGKCPNC 202 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~---~~~~CP~C 202 (220)
..+.+.|+||++.+.+|+.++|||+||..||.+|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999999999999999999999999954 45689988
No 40
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.20 E-value=8.6e-12 Score=106.60 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCccccCCCceee
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~~~~l~~i 214 (220)
..+.+.||||++.+.+||+++|||+||..||.+|+.... .||+|+.++...++++.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 446789999999999999999999999999999998644 59999999988777654
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=7.8e-12 Score=99.57 Aligned_cols=49 Identities=35% Similarity=0.845 Sum_probs=44.6
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCccccCC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKR 209 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~~~ 209 (220)
+.+.|+||++.+.+|++++|||+||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4568999999999999999999999999999998654 899999999865
No 42
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=85.28 Aligned_cols=50 Identities=20% Similarity=0.521 Sum_probs=43.2
Q ss_pred CCCCccccccCCCCCCceE---ecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEATS---TKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~---l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
......|+||++.+..+.. ++|||.||..||.+|++....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4556799999999876643 4999999999999999988899999999864
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=3e-12 Score=96.87 Aligned_cols=50 Identities=32% Similarity=0.778 Sum_probs=44.7
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhc-CCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~ 208 (220)
..+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4567899999999999999999999999999999875 5589999998863
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=93.73 Aligned_cols=54 Identities=30% Similarity=0.691 Sum_probs=47.9
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhc-CCCCCCCCccccCCCcee
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFR 213 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~ 213 (220)
.+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||+||..+...++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 346799999999999999999999999999999987 668999999998766543
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=89.68 Aligned_cols=49 Identities=33% Similarity=0.717 Sum_probs=43.4
Q ss_pred CCCccccccCCCCCC---ceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSE---ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~---pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.+...|+||++.+.. ++.++|||.||..||.+|+.....||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999998876 6778999999999999999988899999998864
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=7.4e-12 Score=95.21 Aligned_cols=53 Identities=26% Similarity=0.624 Sum_probs=46.5
Q ss_pred CCCccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 160 APTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
.+.+.|+||++.+.+|+.+ +|||+||..||..|+. ..||+||..+...++...
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 3567999999999999999 9999999999999986 789999999977666543
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=2.5e-11 Score=97.37 Aligned_cols=50 Identities=38% Similarity=0.903 Sum_probs=44.8
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhc-CCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAA-QGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~ 208 (220)
..+.+.|+||++.+.+|+.+ +|||+||..||.+|+.. ...||+||..+..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34567999999999999988 99999999999999986 6689999999864
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=2.4e-11 Score=82.99 Aligned_cols=55 Identities=20% Similarity=0.594 Sum_probs=48.4
Q ss_pred CCCccccccCCCCCCceEe--cccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 160 APTFSCPICMGPLSEATST--KCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l--~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
.....|+||++.+.+++.+ +|||. ||..|+.++......||+||+++. .++++|+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEEec
Confidence 3455899999999999888 99998 999999999888889999999986 6888885
No 49
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.12 E-value=3.2e-11 Score=98.86 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=50.4
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCccccCCCceeec
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKRGIFRVY 215 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~~~~l~~iy 215 (220)
..+.+.||||++++.+||+++|||+||..||..|+.... .||+|+.++...++++.+
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 356789999999999999999999999999999998643 699999999987877653
No 50
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.11 E-value=1.4e-11 Score=86.66 Aligned_cols=50 Identities=28% Similarity=0.644 Sum_probs=44.2
Q ss_pred CCccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
+.+.|+||++.+.+++.++|||. ||..|+..| ..||+||+.+. ..+++|+
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~~ 73 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT--FKQKILM 73 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS--EEEECBC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc--CcEEEee
Confidence 45689999999999999999999 999998876 78999999987 4677776
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=1.7e-11 Score=81.56 Aligned_cols=46 Identities=20% Similarity=0.521 Sum_probs=40.6
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 46678999999999999999999999999876 35689999998864
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.10 E-value=8.9e-11 Score=83.66 Aligned_cols=56 Identities=27% Similarity=0.651 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCC--CceEec--ccCccchhHHHHHHhc-CCCCCCCCccccCCCceee
Q 027652 159 AAPTFSCPICMGPLS--EATSTK--CGHIFCKDCIKGAIAA-QGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~--~pv~l~--CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~~~l~~i 214 (220)
..+.+.||||++.+. +++.++ |||.||..|+.++... ...||.||+.+....+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 456789999999774 345555 9999999999988753 4589999999987766543
No 53
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.08 E-value=5.8e-11 Score=80.81 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=51.8
Q ss_pred CccccccCCCCCCceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCC
Q 027652 162 TFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp 217 (220)
.+.||||++.+.+|+.+ +|||+|++.||.+|+.....||++++++..++|+++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 47899999999999999 999999999999999988889999999999999998754
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.07 E-value=6.2e-11 Score=89.23 Aligned_cols=47 Identities=34% Similarity=0.706 Sum_probs=39.4
Q ss_pred CccccccCCCCCCce------------------EecccCccchhHHHHHHh-----cCCCCCCCCccccC
Q 027652 162 TFSCPICMGPLSEAT------------------STKCGHIFCKDCIKGAIA-----AQGKCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv------------------~l~CgH~fC~~Ci~~~l~-----~~~~CP~Cr~~v~~ 208 (220)
+..|+||++.+..+. .++|||.||..||.+|+. ....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 358999999986653 679999999999999994 45689999998864
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=5.8e-11 Score=95.63 Aligned_cols=55 Identities=40% Similarity=0.850 Sum_probs=48.9
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCccccCCCcee
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVGKRGIFR 213 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~~~~l~~ 213 (220)
..+.+.|+||++.+.+|+.++|||+||..||.+|+.... .||+||..+...++++
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 567889999999999999999999999999999998644 9999999998766554
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.07 E-value=2.6e-11 Score=95.59 Aligned_cols=49 Identities=20% Similarity=0.630 Sum_probs=44.4
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCC-CCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQG-KCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~-~CP~Cr~~v~ 207 (220)
..+.+.|+||++.+.+|+.++|||+||..||.+|+.... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 467889999999999999999999999999999998665 8999999764
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=82.70 Aligned_cols=52 Identities=23% Similarity=0.508 Sum_probs=43.0
Q ss_pred CCCccccccCCCCCC--------------ceEe-cccCccchhHHHHHHhcCCCCCCCCccccCCCc
Q 027652 160 APTFSCPICMGPLSE--------------ATST-KCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~--------------pv~l-~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l 211 (220)
.++..|+||++.+.+ ++.+ +|||.||..||.+|+.....||+||+.+...++
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 345679999998866 4455 599999999999999998999999999875543
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=9.2e-11 Score=82.43 Aligned_cols=50 Identities=28% Similarity=0.680 Sum_probs=42.9
Q ss_pred CCccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
+...|+||++.+.+++.++|||. ||..|+.+ ...||+||+++.. .+++|+
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~--~~~i~~ 74 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF--KQKIFM 74 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC--CCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC--cEEEec
Confidence 35689999999999999999999 99999853 4789999999874 567775
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.5e-10 Score=77.39 Aligned_cols=54 Identities=28% Similarity=0.592 Sum_probs=46.7
Q ss_pred CCCCccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecCCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPT 218 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~ 218 (220)
..+...|+||++...+++.++|||. ||..|+.. ...||+||+.+. ..+++|.|.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~--~~~~i~~~~ 66 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ--ESFALSGPS 66 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC--CEECCCSSC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh--ceEEeecCC
Confidence 3456789999999999999999999 99999873 478999999887 478888875
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.97 E-value=1.8e-10 Score=82.17 Aligned_cols=52 Identities=35% Similarity=0.797 Sum_probs=45.4
Q ss_pred CccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 162 TFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
...|+||++.+.+++.++|||. ||..|+..+ ..||+||..+.. .+++|+|..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~~p~~ 70 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH--VQHVYLPTH 70 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE--EEECBCTTC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC--eEEEEeCcc
Confidence 4589999999999999999999 999998754 499999999884 688898853
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=3.6e-10 Score=102.56 Aligned_cols=50 Identities=24% Similarity=0.592 Sum_probs=45.0
Q ss_pred CccccccCCCCCCceEecccCccchhHHHHHHh-cCCCCCCCCccccCCCc
Q 027652 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA-AQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~-~~~~CP~Cr~~v~~~~l 211 (220)
...|+||++.+.+++.++|||.||..|+..|+. ....||+||..+....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 369999999999999999999999999999998 57799999999986443
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.88 E-value=9e-10 Score=82.88 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=40.3
Q ss_pred CccccccCCCCCCc------------------eEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 162 TFSCPICMGPLSEA------------------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~~p------------------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
...|+||++.+.++ +.++|||.||..||.+|+.....||+||+.+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 44799999988754 446999999999999999998999999998753
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.85 E-value=9e-10 Score=94.96 Aligned_cols=56 Identities=30% Similarity=0.644 Sum_probs=48.7
Q ss_pred CCCCccccccCCCCCCceEe-cccCccchhHHHHHHhcC--CCCCC--CCccccCCCceee
Q 027652 159 AAPTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQ--GKCPN--CRQKVGKRGIFRV 214 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~--~~CP~--Cr~~v~~~~l~~i 214 (220)
....+.||||+..+.+||+. .|||+||+.||..|+... ..||+ |++.+...+|...
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 45678999999999999985 999999999999998754 37999 9999988877653
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.71 E-value=2.7e-09 Score=95.64 Aligned_cols=50 Identities=32% Similarity=0.833 Sum_probs=43.6
Q ss_pred CCccccccCCCCCCceEecccCc-cchhHHHHHHhcCCCCCCCCccccCCCceeecC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHI-FCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYL 216 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~-fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iyl 216 (220)
+...|+||++.+.+++.++|||. ||..|+..| ..||+||.++. ..+++|+
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~--~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK--GTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC--EEEECC-
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc--CeEEeec
Confidence 46799999999999999999999 999998865 78999999987 4567775
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.63 E-value=4.5e-09 Score=80.48 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=0.0
Q ss_pred ccccccCCCCCCc------------------eEecccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 163 FSCPICMGPLSEA------------------TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 163 ~~CpIC~~~~~~p------------------v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
..|+||++.+.++ +.++|+|.||..||.+|+.....||+||+.+...
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4799999988653 2248999999999999999988999999987543
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=4.5e-09 Score=76.65 Aligned_cols=54 Identities=26% Similarity=0.664 Sum_probs=42.3
Q ss_pred CCCccccccCCCCCCceEe---cccCccchhHHHHHHhc--------CCCCCC--CCcc--ccCCCcee
Q 027652 160 APTFSCPICMGPLSEATST---KCGHIFCKDCIKGAIAA--------QGKCPN--CRQK--VGKRGIFR 213 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~l~~--------~~~CP~--Cr~~--v~~~~l~~ 213 (220)
.+.+.|+||++.+..+..+ +|||.||..|+..++.. ...||. |+.. +....+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ 71 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIEC 71 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHH
Confidence 3467899999998887554 69999999999999873 137999 9998 66554443
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=8.5e-08 Score=68.45 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCccccccCCCCC--CceEeccc-----CccchhHHHHHHhcC--CCCCCCCccccCC
Q 027652 160 APTFSCPICMGPLS--EATSTKCG-----HIFCKDCIKGAIAAQ--GKCPNCRQKVGKR 209 (220)
Q Consensus 160 ~~~~~CpIC~~~~~--~pv~l~Cg-----H~fC~~Ci~~~l~~~--~~CP~Cr~~v~~~ 209 (220)
.+...|.||++.+. ++..++|. |.|+..||.+|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34558999998764 56778996 999999999999865 4899999998743
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.4e-06 Score=61.24 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=40.3
Q ss_pred CCCccccccCCCCCCceEe-cccCccchhHHHHHHhcC--CCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQ--GKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~--~~CP~Cr~~v~ 207 (220)
+....|+||+..+.....- .|+|.|+..||.+|++.. ..||+|+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456899999988755444 899999999999999876 78999998876
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.86 E-value=8.3e-06 Score=60.27 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=37.4
Q ss_pred cccccCCCCCCc-eEecccCccchhHHHHHHhc-CCCCCCCCccccC
Q 027652 164 SCPICMGPLSEA-TSTKCGHIFCKDCIKGAIAA-QGKCPNCRQKVGK 208 (220)
Q Consensus 164 ~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~~ 208 (220)
.|++|.-++..- ..+||+|+||+.|+..|.+. .+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 689998877754 45699999999999998754 6789999999873
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.74 E-value=8.1e-06 Score=72.90 Aligned_cols=49 Identities=22% Similarity=0.553 Sum_probs=38.8
Q ss_pred CCCccccccCCCCCC----ce----EecccCccchhHHHHHHhcC-----------CCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSE----AT----STKCGHIFCKDCIKGAIAAQ-----------GKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~----pv----~l~CgH~fC~~Ci~~~l~~~-----------~~CP~Cr~~v~~ 208 (220)
+....|+||+..+.+ |. ...|||.|+..|+.+|++.. ..||.|+.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999998776 21 23799999999999999742 369999998864
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.72 E-value=2.6e-05 Score=52.40 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCCceEeccc--C---ccchhHHHHHHhc--CCCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSEATSTKCG--H---IFCKDCIKGAIAA--QGKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~Cg--H---~fC~~Ci~~~l~~--~~~CP~Cr~~v~~ 208 (220)
++...|.||++...++..+||. + .|+..|+.+|+.. ...||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3445899999876666667854 4 7999999999975 4689999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.40 E-value=0.0025 Score=53.95 Aligned_cols=47 Identities=23% Similarity=0.561 Sum_probs=38.6
Q ss_pred CccccccCCCCCCceEe-cccCccchhHHHHHHhcCC--CCCCCCccccC
Q 027652 162 TFSCPICMGPLSEATST-KCGHIFCKDCIKGAIAAQG--KCPNCRQKVGK 208 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci~~~l~~~~--~CP~Cr~~v~~ 208 (220)
...|.+|.+.......- .|+|.|+..|+.+|++... .||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 34899999988866555 4999999999999987544 89999887654
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.87 E-value=0.0053 Score=61.21 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCCccccccCCCCCCceEeccc-CccchhHHHHHHhcCCCCCCCCccccCCCceee
Q 027652 160 APTFSCPICMGPLSEATSTKCG-HIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRV 214 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~Cg-H~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~i 214 (220)
.+.|.|||-.+.+.+||+++.| ++|=..+|.+|+.....||..|.++...++++.
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 4688999999999999999998 589999999999988899999999998887764
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.61 E-value=0.0048 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.691 Sum_probs=26.7
Q ss_pred CCccccccCCC-CCCceE--ecccCccchhHHHHH
Q 027652 161 PTFSCPICMGP-LSEATS--TKCGHIFCKDCIKGA 192 (220)
Q Consensus 161 ~~~~CpIC~~~-~~~pv~--l~CgH~fC~~Ci~~~ 192 (220)
++..|+||.+. +.+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 34689999975 677777 799999999999873
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.13 E-value=0.0058 Score=44.47 Aligned_cols=48 Identities=19% Similarity=0.530 Sum_probs=39.1
Q ss_pred CCCCccccccCCCCCCceEeccc-CccchhHHHHHHhcCCCCCCCCccccC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCG-HIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~Cg-H~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
....+.|..|..... -.+.|. |.+|..|+.-++..+..||+|..++..
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 445678999985444 466775 778999999999999999999999875
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.31 E-value=0.055 Score=38.29 Aligned_cols=37 Identities=30% Similarity=0.724 Sum_probs=31.0
Q ss_pred CCCCccccccCCCCCCceEecc----cCccchhHHHHHHhc
Q 027652 159 AAPTFSCPICMGPLSEATSTKC----GHIFCKDCIKGAIAA 195 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~C----gH~fC~~Ci~~~l~~ 195 (220)
....+.|.+|.+.+.+...+.| +|.||..|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3456799999999999877766 588999999998884
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.49 E-value=0.45 Score=42.60 Aligned_cols=52 Identities=19% Similarity=0.506 Sum_probs=38.1
Q ss_pred CCccccccCCCCCCceEe-cccCccchhH--HHHHHhcC--CCCCCCCccccCCCce
Q 027652 161 PTFSCPICMGPLSEATST-KCGHIFCKDC--IKGAIAAQ--GKCPNCRQKVGKRGIF 212 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l-~CgH~fC~~C--i~~~l~~~--~~CP~Cr~~v~~~~l~ 212 (220)
-.+.||+-...+..|+.- .|.|..|+.- +..+.... -.||+|.+.+...+|+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 357999999999999876 8999977664 33332222 3799999988766654
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.79 E-value=0.63 Score=41.54 Aligned_cols=52 Identities=21% Similarity=0.456 Sum_probs=37.8
Q ss_pred CCccccccCCCCCCceEe-cccCccchhHH--HHHHhcC--CCCCCCCccccCCCce
Q 027652 161 PTFSCPICMGPLSEATST-KCGHIFCKDCI--KGAIAAQ--GKCPNCRQKVGKRGIF 212 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l-~CgH~fC~~Ci--~~~l~~~--~~CP~Cr~~v~~~~l~ 212 (220)
-.+.||+-...+..|+.- .|.|.-|+.-. ..+.... -.||+|.+.+...+|.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 456899999999999876 89999776542 2222222 3799999998866654
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=80.25 E-value=1 Score=33.34 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=37.9
Q ss_pred CccccccCCCCCC---ceEecccCccchhHHHHHHhcCCCCCCCCccccCCCc
Q 027652 162 TFSCPICMGPLSE---ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGI 211 (220)
Q Consensus 162 ~~~CpIC~~~~~~---pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l 211 (220)
=|.|..|...+.+ .....=|..||..|..+.+....+|..|..+|....+
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 3789999988863 3445677889999998876544589999998886443
No 80
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.86 E-value=1.4 Score=31.27 Aligned_cols=49 Identities=18% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCCCccccccCCCCCCc----eEecccCccchhHHHHHHh------cCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEA----TSTKCGHIFCKDCIKGAIA------AQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p----v~l~CgH~fC~~Ci~~~l~------~~~~CP~Cr~~v~ 207 (220)
..+...|.+|...|.-- .-..||++||..|...... ....|-.|...+.
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 33456799998876532 1227999999999754321 1224666665554
No 81
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=75.85 E-value=2 Score=29.89 Aligned_cols=34 Identities=21% Similarity=0.579 Sum_probs=24.5
Q ss_pred CCCCCccccccCCCCCCce----EecccCccchhHHHH
Q 027652 158 AAAPTFSCPICMGPLSEAT----STKCGHIFCKDCIKG 191 (220)
Q Consensus 158 ~~~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~ 191 (220)
+..+...|.+|...|.--. --.||++||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4456678999988776321 127999999999754
No 82
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.97 E-value=0.23 Score=37.55 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=27.0
Q ss_pred CCCCccccccCCCCCCce----EecccCccchhHHHHHHhcCCCCCCCCc
Q 027652 159 AAPTFSCPICMGPLSEAT----STKCGHIFCKDCIKGAIAAQGKCPNCRQ 204 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~ 204 (220)
..+...|..|...|.--. --.||.+||..|..........|-.|..
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 344568999988776421 2279999999997554444455666644
No 83
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.11 E-value=2.7 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.632 Sum_probs=23.0
Q ss_pred CCCCccccccCCCCCCce----EecccCccchhHHH
Q 027652 159 AAPTFSCPICMGPLSEAT----STKCGHIFCKDCIK 190 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~ 190 (220)
..+...|.+|...|.--. --.||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 445568999998775321 12799999999964
No 84
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.99 E-value=1.7 Score=30.24 Aligned_cols=33 Identities=30% Similarity=0.751 Sum_probs=23.6
Q ss_pred CCCCccccccCCCCCCce----EecccCccchhHHHH
Q 027652 159 AAPTFSCPICMGPLSEAT----STKCGHIFCKDCIKG 191 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~ 191 (220)
..+...|.+|...|.--. --.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445568999998776321 127999999999753
No 85
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=68.40 E-value=1 Score=40.08 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCc----eEecccCccchhHHHHHHh-------cCCCCCCCCcccc
Q 027652 159 AAPTFSCPICMGPLSEA----TSTKCGHIFCKDCIKGAIA-------AQGKCPNCRQKVG 207 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p----v~l~CgH~fC~~Ci~~~l~-------~~~~CP~Cr~~v~ 207 (220)
..+...|.+|...|.-- .-..||++||..|...... ....|-.|...+.
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 34456899998877532 1237999999999865432 1235888866554
No 86
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.23 E-value=1.8 Score=32.65 Aligned_cols=31 Identities=29% Similarity=0.731 Sum_probs=22.0
Q ss_pred CCccccccCCCCCCce----EecccCccchhHHHH
Q 027652 161 PTFSCPICMGPLSEAT----STKCGHIFCKDCIKG 191 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~ 191 (220)
+...|.+|...|.--. --.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3447999988776321 127999999999643
No 87
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=64.56 E-value=3.1 Score=28.15 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=21.2
Q ss_pred CccccccCCCCCCceE----ecccCccchhHHH
Q 027652 162 TFSCPICMGPLSEATS----TKCGHIFCKDCIK 190 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~----l~CgH~fC~~Ci~ 190 (220)
+..|.+|...|.--.. -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3489999987763221 2799999999964
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=64.52 E-value=6.7 Score=27.80 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCccccccCCCCCCceEe---cccCccchhHHHHH
Q 027652 160 APTFSCPICMGPLSEATST---KCGHIFCKDCIKGA 192 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~ 192 (220)
..+..|.||...- ....+ -|+-+|+..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 3566899997543 33344 57899999999987
No 89
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=63.53 E-value=3.4 Score=29.15 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=22.4
Q ss_pred CCCccccccCCCCCCce----EecccCccchhHHHH
Q 027652 160 APTFSCPICMGPLSEAT----STKCGHIFCKDCIKG 191 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~ 191 (220)
.+...|.+|...|.--. --.||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34448999988766321 127999999999653
No 90
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=61.82 E-value=6.1 Score=28.98 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=35.3
Q ss_pred CCccccccCCCCCC---ceEecccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 161 PTFSCPICMGPLSE---ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 161 ~~~~CpIC~~~~~~---pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
+=|.|..|...+.. .....=|..||..|..+......+|..|.+.|...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 45788889888752 34556778899999877653333899998888653
No 91
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=61.46 E-value=1.4 Score=25.82 Aligned_cols=15 Identities=47% Similarity=0.953 Sum_probs=11.0
Q ss_pred CCccccccCCCCCCc
Q 027652 161 PTFSCPICMGPLSEA 175 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p 175 (220)
+.|.||+|+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 457888888777654
No 92
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=60.60 E-value=10 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=35.5
Q ss_pred CCccccccCCCCCCc-eEecccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 161 PTFSCPICMGPLSEA-TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
+-|.|..|...+... ....=|..||..|..+. ...+|..|.++|...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 347889998887753 34467888999998654 457899999999853
No 93
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.56 E-value=1.4 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=21.9
Q ss_pred ccccccCCCCCCc-----eEec---ccCccchhHHHHHHh
Q 027652 163 FSCPICMGPLSEA-----TSTK---CGHIFCKDCIKGAIA 194 (220)
Q Consensus 163 ~~CpIC~~~~~~p-----v~l~---CgH~fC~~Ci~~~l~ 194 (220)
-.||-|...+... ++-. |++.||+.|...|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 3688887766542 2333 888899988877654
No 94
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=60.12 E-value=11 Score=29.09 Aligned_cols=48 Identities=23% Similarity=0.512 Sum_probs=34.6
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
+=|.|..|...+.......=|..||..|..+.. ..+|..|...|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCCCc
Confidence 457888898877765445567789999986653 567888888776543
No 95
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=59.89 E-value=16 Score=24.84 Aligned_cols=42 Identities=17% Similarity=0.421 Sum_probs=27.7
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
....|..|...+...++..-+..|+..|+ .|-.|...|....
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCCCCC
Confidence 34578888887776555556666666663 5777877776543
No 96
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=59.34 E-value=8.6 Score=25.54 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=29.6
Q ss_pred CccccccCCCCCCceEe--cccCccchhHHHHHHhcCC----CCCCCCccc
Q 027652 162 TFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQG----KCPNCRQKV 206 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~~----~CP~Cr~~v 206 (220)
...|.||.+.-. +.+ .|...|+..|+...+.... .|+.|....
T Consensus 12 ~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 447999986422 222 7888999999976655332 799997643
No 97
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=59.02 E-value=3.5 Score=32.66 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=34.9
Q ss_pred CCccccccCCCCCC---ceEecccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 161 PTFSCPICMGPLSE---ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 161 ~~~~CpIC~~~~~~---pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
+=|.|..|...+.. .....=|..||..|..+......+|..|.+.|...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 34788888887764 44556678899999877653223799999888753
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.01 E-value=6 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.583 Sum_probs=24.2
Q ss_pred CCCccccccCCCCCCceEecc-cCccchhHHHHHHh
Q 027652 160 APTFSCPICMGPLSEATSTKC-GHIFCKDCIKGAIA 194 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~C-gH~fC~~Ci~~~l~ 194 (220)
++...|-||.+... -.-+.| |-.||..|+...-.
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHcc
Confidence 34458999998733 223467 77899999988763
No 99
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=58.31 E-value=2.7 Score=36.58 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=35.1
Q ss_pred CCCccccccCCCCCCceEe----ccc--CccchhHHHHHHhcCCCCCCCCcc
Q 027652 160 APTFSCPICMGPLSEATST----KCG--HIFCKDCIKGAIAAQGKCPNCRQK 205 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l----~Cg--H~fC~~Ci~~~l~~~~~CP~Cr~~ 205 (220)
+..-.||+|-......+.. .=| +.+|..|-..|.....+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5667999999987765543 234 457999988887777799999775
No 100
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.86 E-value=8.8 Score=25.64 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=24.8
Q ss_pred CccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
...|..|...+...++..-+..|+..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4478888887776555555666666553 4667766664
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.74 E-value=3.9 Score=33.38 Aligned_cols=32 Identities=25% Similarity=0.645 Sum_probs=22.8
Q ss_pred CCCccccccCCCCCCce----EecccCccchhHHHH
Q 027652 160 APTFSCPICMGPLSEAT----STKCGHIFCKDCIKG 191 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~ 191 (220)
.+...|.+|...|.--. --.||++||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34579999988775321 127999999999643
No 102
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.09 E-value=7.3 Score=32.02 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=22.5
Q ss_pred CCccccccCCCCCCce----EecccCccchhHHHH
Q 027652 161 PTFSCPICMGPLSEAT----STKCGHIFCKDCIKG 191 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv----~l~CgH~fC~~Ci~~ 191 (220)
+...|.+|...|.--. --.||++||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4468999988776321 227999999999653
No 103
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=55.39 E-value=9.9 Score=29.74 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=33.8
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCC
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKR 209 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~ 209 (220)
.-|.|..|...+.......=|..||..|..+. ...+|..|...|...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccCCC
Confidence 45788888888776544556778999997653 356888898888654
No 104
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=51.54 E-value=11 Score=26.18 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=34.6
Q ss_pred CCccccccCCCCCCc-eEecccCccchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 161 PTFSCPICMGPLSEA-TSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
.=|.|..|...+... ....=|..||..|..+. ...+|..|.+.|...+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVAGD 80 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCSSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccccCC
Confidence 347889998888654 33466788999997432 3568999999997543
No 105
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.50 E-value=7.1 Score=25.61 Aligned_cols=39 Identities=31% Similarity=0.712 Sum_probs=26.2
Q ss_pred cccccCCCCCCceEe---cccCccchhHHHHHHhcCCCCCCC
Q 027652 164 SCPICMGPLSEATST---KCGHIFCKDCIKGAIAAQGKCPNC 202 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~l~~~~~CP~C 202 (220)
.|-.|+..+.+.... .|++.||..|=.=....-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 588888887655433 789999999943222223368877
No 106
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.27 E-value=2.9 Score=28.22 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=32.0
Q ss_pred CCCccccccCCCCCCceEe---cccCccchhHHHHHHhc----CCCCCCCCccccC
Q 027652 160 APTFSCPICMGPLSEATST---KCGHIFCKDCIKGAIAA----QGKCPNCRQKVGK 208 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~l~~----~~~CP~Cr~~v~~ 208 (220)
.+...|++|.........+ .|..-|+..|+.--... .-.||.|...+.+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 4456799998765443334 57777899998533221 2369999877654
No 107
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.48 E-value=16 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=19.2
Q ss_pred cccccCCCCC-----CceEec-ccCccchhHHHHH
Q 027652 164 SCPICMGPLS-----EATSTK-CGHIFCKDCIKGA 192 (220)
Q Consensus 164 ~CpIC~~~~~-----~pv~l~-CgH~fC~~Ci~~~ 192 (220)
.||-|...+. ..+.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4887765432 124444 9999999997766
No 108
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=49.89 E-value=7.1 Score=25.35 Aligned_cols=44 Identities=16% Similarity=0.487 Sum_probs=29.1
Q ss_pred CCCCccccccCCCCCCceEe--cccCccchhHHHHHHhcC----CCCCCCCc
Q 027652 159 AAPTFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQ----GKCPNCRQ 204 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~----~~CP~Cr~ 204 (220)
......|.+|... ..+.+ .|...|+..|+..-+... -.||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456689999874 22222 677789999987643321 26999964
No 109
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=49.48 E-value=27 Score=24.52 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=22.4
Q ss_pred CCCCccccccCCCCCC--ceEecccCccchhH
Q 027652 159 AAPTFSCPICMGPLSE--ATSTKCGHIFCKDC 188 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~--pv~l~CgH~fC~~C 188 (220)
......|..|...+.- +..-.||.+||..-
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECRCGNNFCASH 53 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECTTCCEECTTT
T ss_pred cccCccchhhCCeecccCCeEcCCCCEecccC
Confidence 4456799999875543 67778999999753
No 110
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.44 E-value=25 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=25.9
Q ss_pred CCCccccccCCCCCC-ceEecccCccchhHHHHHHhcCCCCCCCCccccCCC
Q 027652 160 APTFSCPICMGPLSE-ATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRG 210 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~ 210 (220)
.....|..|...+.. ..+..-+..|+..|+ +|-.|...|....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 345589999887643 233345555666653 4667777665544
No 111
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.89 E-value=19 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.382 Sum_probs=22.4
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
..|+.|...+....+..-+..|+..|+ .|-.|...|..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCCC
Confidence 367777776665555555555555553 46666666654
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.15 E-value=42 Score=23.89 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=32.3
Q ss_pred CccccccCCCCCCc----eEe---cccCccchhHHHHHHhc-CCCCCCCCcccc
Q 027652 162 TFSCPICMGPLSEA----TST---KCGHIFCKDCIKGAIAA-QGKCPNCRQKVG 207 (220)
Q Consensus 162 ~~~CpIC~~~~~~p----v~l---~CgH~fC~~Ci~~~l~~-~~~CP~Cr~~v~ 207 (220)
.-.|.||-+..--. +.+ .|+-..|+.|+.--.+. ...||.|.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34899998854321 333 57777899998755553 458999988875
No 113
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.69 E-value=8.7 Score=23.70 Aligned_cols=41 Identities=22% Similarity=0.614 Sum_probs=25.4
Q ss_pred cccccCCCCCCceEe---cccCccchhHHHHHHhcC----CCCCCCCc
Q 027652 164 SCPICMGPLSEATST---KCGHIFCKDCIKGAIAAQ----GKCPNCRQ 204 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~l~~~----~~CP~Cr~ 204 (220)
.|.+|...-.....+ .|...|+..|+..-+... -.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887654322233 677789999986443322 25999865
No 114
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.97 E-value=1.2 Score=31.26 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=13.6
Q ss_pred CCCCCCCccccCCCceeecCC
Q 027652 197 GKCPNCRQKVGKRGIFRVYLP 217 (220)
Q Consensus 197 ~~CP~Cr~~v~~~~l~~iylp 217 (220)
..|+.|..-++++.+.=.|.|
T Consensus 52 yFC~~C~~LiSkkrv~f~~~~ 72 (81)
T 2jrp_A 52 YFCQNGHGLISKKRVNFVISD 72 (81)
T ss_dssp ECCTTTTCCCCTTSSEEEECC
T ss_pred eeeccCCCEeecceEEEEecc
Confidence 357777777777666655554
No 115
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.09 E-value=1.2 Score=32.35 Aligned_cols=40 Identities=30% Similarity=0.768 Sum_probs=25.7
Q ss_pred ccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCcccc
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
..||.|...+.- .=++.+|..|-+.+ .....||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchh-hccccCcchhhHHH
Confidence 589999976542 22344588885432 23457999988775
No 116
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.90 E-value=11 Score=24.51 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCccccccCCCCCCceEe--cccCccchhHHHHHHhcC----CCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQ----GKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~----~~CP~Cr~~v~ 207 (220)
.....|.+|...- ...+ .|...|+..|+..-+... -.||.|.....
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456799998632 1222 677788999986433321 26999976543
No 117
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.24 E-value=2.7 Score=28.98 Aligned_cols=16 Identities=31% Similarity=0.972 Sum_probs=13.1
Q ss_pred cccCccchhHHHHHHh
Q 027652 179 KCGHIFCKDCIKGAIA 194 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~ 194 (220)
.||+.||..|...|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999877643
No 118
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.91 E-value=8.7 Score=28.19 Aligned_cols=25 Identities=32% Similarity=0.846 Sum_probs=15.7
Q ss_pred cccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 179 KCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 179 ~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.||+.|+. -+.....||.|+..-..
T Consensus 72 ~CG~~F~~-----~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFKA-----EINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCCC-----CSSCCSSCSSSCCCCBC
T ss_pred hCcCeecc-----cCCCCCCCcCCCCCccC
Confidence 58888721 12345689999876543
No 119
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=35.98 E-value=6.1 Score=26.63 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=30.5
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
..+.+.||+|...+.-.. .. ..-.|+.|+..+...+=+++.|+..
T Consensus 5 LL~iL~CP~ck~~L~~~~--~~--------------~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQ--DK--------------QELWSRQAKLAYPIKDGIPYMLENE 49 (68)
T ss_dssp SSCCCBCSSSCCBCEEET--TT--------------TEEEETTTTEEEEEETTEECCCTTT
T ss_pred HhhheECCCCCCcCeEeC--CC--------------CEEEcCCCCcEecCCCCeeeeChhh
Confidence 356678999998655211 11 1225788888888888888888874
No 120
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.85 E-value=21 Score=23.67 Aligned_cols=37 Identities=22% Similarity=0.514 Sum_probs=20.3
Q ss_pred cccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccC
Q 027652 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGK 208 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~ 208 (220)
.|+.|...+...++..-+..|+..|+ .|-.|.+.+..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred cCccccCEeccceEEECCceeCccCC--------ccccCCCCCCC
Confidence 57777665554444444545555442 45666666553
No 121
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.62 E-value=25 Score=22.49 Aligned_cols=30 Identities=23% Similarity=0.713 Sum_probs=13.3
Q ss_pred ccccccCCCCCCce-EecccCccchhHHHHH
Q 027652 163 FSCPICMGPLSEAT-STKCGHIFCKDCIKGA 192 (220)
Q Consensus 163 ~~CpIC~~~~~~pv-~l~CgH~fC~~Ci~~~ 192 (220)
|.|..|...+.... ...-|..||..|..+.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 45555554444321 1233445555555443
No 122
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.75 E-value=20 Score=24.06 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=21.7
Q ss_pred CCCCccccccCCCCCCc----eEecccCccchh
Q 027652 159 AAPTFSCPICMGPLSEA----TSTKCGHIFCKD 187 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~p----v~l~CgH~fC~~ 187 (220)
......|..|...+.-+ ..-.||.+||..
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 44556899999877755 344899999975
No 123
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=33.78 E-value=60 Score=21.57 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=27.6
Q ss_pred CCCccccccCCCCCCceEe---c--cc-CccchhHHHHHHhc----CCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEATST---K--CG-HIFCKDCIKGAIAA----QGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~--Cg-H~fC~~Ci~~~l~~----~~~CP~Cr~~v~ 207 (220)
.+...| +|....... .+ . |. .-|+..|+. +.. .-.||.|...-.
T Consensus 14 ~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 345578 898865443 44 3 55 468999985 222 226999976554
No 124
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.31 E-value=41 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.518 Sum_probs=22.3
Q ss_pred CccccccCCCCCCc-eEecccCccchhHHHHHHh
Q 027652 162 TFSCPICMGPLSEA-TSTKCGHIFCKDCIKGAIA 194 (220)
Q Consensus 162 ~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~ 194 (220)
=|.|..|...+... ....=|..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 46788887777543 3345567788888876654
No 125
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.24 E-value=28 Score=22.29 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=16.4
Q ss_pred ccccccCCCCCCc-eEecccCccchhHHHHH
Q 027652 163 FSCPICMGPLSEA-TSTKCGHIFCKDCIKGA 192 (220)
Q Consensus 163 ~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~ 192 (220)
|.|..|...+... ....=|..||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 5666666655542 22344556677666543
No 126
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.20 E-value=18 Score=25.78 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=27.2
Q ss_pred CCCccccccCCCCCCceEe---cccCccchhHHHHHHhc---CCCCCCCCc
Q 027652 160 APTFSCPICMGPLSEATST---KCGHIFCKDCIKGAIAA---QGKCPNCRQ 204 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~CgH~fC~~Ci~~~l~~---~~~CP~Cr~ 204 (220)
.+...| ||.........+ .|..-|+..|+..-... .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 445678 887765544445 56667888887432221 237999964
No 127
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.08 E-value=18 Score=25.25 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=33.2
Q ss_pred CCCCccccccCCCC--CCceEe---cccCccchhHHHHHHhc--CCCCCCCCccccCCCce
Q 027652 159 AAPTFSCPICMGPL--SEATST---KCGHIFCKDCIKGAIAA--QGKCPNCRQKVGKRGIF 212 (220)
Q Consensus 159 ~~~~~~CpIC~~~~--~~pv~l---~CgH~fC~~Ci~~~l~~--~~~CP~Cr~~v~~~~l~ 212 (220)
..++..|.||...- .....+ .|.-.|+..|+..-... .-.||.|........|.
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC--
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhhh
Confidence 34567899999764 222333 67778999998643221 22699997766655543
No 128
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.91 E-value=68 Score=22.57 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=27.3
Q ss_pred CCCccccccCCCCCCceEe---c--cc-CccchhHHHHHHhc----CCCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEATST---K--CG-HIFCKDCIKGAIAA----QGKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l---~--Cg-H~fC~~Ci~~~l~~----~~~CP~Cr~~v~ 207 (220)
.+...| +|....... .+ . |. .-|+..|+. +.. .-.||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345677 998865432 33 3 54 458889975 222 237999976544
No 129
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.97 E-value=50 Score=21.41 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCccccccCCCCCC-ceEecccCccch-hHHHHHHhcCCCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSE-ATSTKCGHIFCK-DCIKGAIAAQGKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~-pv~l~CgH~fC~-~Ci~~~l~~~~~CP~Cr~~v~ 207 (220)
+=|.|..|...+.. .....=|..||. .|..+. ...+|..|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCCcee
Confidence 45789999888775 344566788999 698654 4567888876543
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.04 E-value=40 Score=21.50 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=12.3
Q ss_pred ccccccCCCCCCc-eEecccCccchhHHH
Q 027652 163 FSCPICMGPLSEA-TSTKCGHIFCKDCIK 190 (220)
Q Consensus 163 ~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~ 190 (220)
|.|..|...+... ....=|..||..|..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYE 62 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHh
Confidence 4455555444432 122334445555544
No 131
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=30.81 E-value=41 Score=25.74 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=29.2
Q ss_pred CCccccccCCCCCCceEecccCccchhHHHHHHh---------cC--CCCCCCCc
Q 027652 161 PTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIA---------AQ--GKCPNCRQ 204 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~---------~~--~~CP~Cr~ 204 (220)
.+..|.+|.+.-.-----.|-.+||..|+.+-+. .. =.||.|..
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3568999987543111117888999999986552 11 26999974
No 132
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.49 E-value=20 Score=26.02 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=10.6
Q ss_pred ccchhHHHHHHh
Q 027652 183 IFCKDCIKGAIA 194 (220)
Q Consensus 183 ~fC~~Ci~~~l~ 194 (220)
-||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 133
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.46 E-value=20 Score=26.06 Aligned_cols=12 Identities=25% Similarity=0.924 Sum_probs=10.6
Q ss_pred cchhHHHHHHhc
Q 027652 184 FCKDCIKGAIAA 195 (220)
Q Consensus 184 fC~~Ci~~~l~~ 195 (220)
||..|+.+|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 134
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.23 E-value=25 Score=22.21 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=11.1
Q ss_pred ccccccCCCCCCc-eEecccCccchhHHH
Q 027652 163 FSCPICMGPLSEA-TSTKCGHIFCKDCIK 190 (220)
Q Consensus 163 ~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~ 190 (220)
|.|..|...+... ....=|..||..|..
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 3444444433321 122334444544443
No 135
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.14 E-value=31 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=16.6
Q ss_pred CccccccCCCCCCc-eEecccCccchhHHHHH
Q 027652 162 TFSCPICMGPLSEA-TSTKCGHIFCKDCIKGA 192 (220)
Q Consensus 162 ~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~ 192 (220)
=|.|..|...+... ....=|..||..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 35666666655432 22344556677666543
No 136
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.05 E-value=56 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.701 Sum_probs=11.3
Q ss_pred ccccccCCCCCCceEecccCccchhHH
Q 027652 163 FSCPICMGPLSEATSTKCGHIFCKDCI 189 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l~CgH~fC~~Ci 189 (220)
|.|..|...+.......=|..||..|.
T Consensus 42 F~C~~C~~~L~~~~f~~~g~~yC~~cy 68 (79)
T 2cor_A 42 FNCANCGKELTADARELKGELYCLPCH 68 (79)
T ss_dssp SBCSSSCCBCCTTCEEETTEEECHHHH
T ss_pred CEeCCCCCccCCCCEeECCEEeCHHHH
Confidence 444445444433222233344555443
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.96 E-value=55 Score=21.20 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=11.1
Q ss_pred cccccCCCCC-CceEecccCccchhH
Q 027652 164 SCPICMGPLS-EATSTKCGHIFCKDC 188 (220)
Q Consensus 164 ~CpIC~~~~~-~pv~l~CgH~fC~~C 188 (220)
.|+.|...+. ...+..-+..|+..|
T Consensus 11 ~C~~C~~~I~~~~~v~a~~~~~H~~C 36 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVSSLGKDWHKFC 36 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTT
T ss_pred CCcCCCCEeECCeEEEECCeEeeCCC
Confidence 4666655544 223333344444443
No 138
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.49 E-value=40 Score=21.96 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=5.3
Q ss_pred cccccCCCCC
Q 027652 164 SCPICMGPLS 173 (220)
Q Consensus 164 ~CpIC~~~~~ 173 (220)
.|+.|...+.
T Consensus 7 ~C~~C~~~I~ 16 (76)
T 1x68_A 7 GCVACSKPIS 16 (76)
T ss_dssp CCTTTCCCCC
T ss_pred CCccCCCccc
Confidence 4555555544
No 139
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.32 E-value=60 Score=25.30 Aligned_cols=34 Identities=24% Similarity=0.617 Sum_probs=25.1
Q ss_pred CCccccccCCCCCCc-eEecccCccchhHHHHHHh
Q 027652 161 PTFSCPICMGPLSEA-TSTKCGHIFCKDCIKGAIA 194 (220)
Q Consensus 161 ~~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~l~ 194 (220)
+=|.|..|...+... ....=|..||..|..+...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 457899998877764 3345577899999987764
No 140
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.18 E-value=32 Score=21.89 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=16.9
Q ss_pred CccccccCCCCCCc-eEecccCccchhHHHHH
Q 027652 162 TFSCPICMGPLSEA-TSTKCGHIFCKDCIKGA 192 (220)
Q Consensus 162 ~~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~~ 192 (220)
=|.|..|...+... ....=|..||..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 35666666655432 22344556677766544
No 141
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.97 E-value=43 Score=22.05 Aligned_cols=29 Identities=21% Similarity=0.572 Sum_probs=12.5
Q ss_pred ccccccCCCCCCc-eEecccCccchhHHHH
Q 027652 163 FSCPICMGPLSEA-TSTKCGHIFCKDCIKG 191 (220)
Q Consensus 163 ~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~ 191 (220)
|.|..|...+... ....=|..||..|..+
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHHHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHHHHH
Confidence 4445554444332 2223344455555443
No 142
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=27.78 E-value=13 Score=29.19 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=27.9
Q ss_pred CccccccCCCCCCceEe--cccCccchhHHHHHHhcC----CCCCCCCcccc
Q 027652 162 TFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQ----GKCPNCRQKVG 207 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~----~~CP~Cr~~v~ 207 (220)
+..|.+|...-. ... .|...|+..|+..-+... -.||.|+..-.
T Consensus 4 ~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 346999986422 222 677788888975544322 26999987543
No 143
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=27.13 E-value=32 Score=33.36 Aligned_cols=32 Identities=31% Similarity=0.859 Sum_probs=24.3
Q ss_pred ccccccCCCCCCc----------eEecccCccchhHHHHHHh
Q 027652 163 FSCPICMGPLSEA----------TSTKCGHIFCKDCIKGAIA 194 (220)
Q Consensus 163 ~~CpIC~~~~~~p----------v~l~CgH~fC~~Ci~~~l~ 194 (220)
..||+|+-...+. ..+.||-+||..|+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~ 55 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR 55 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhc
Confidence 3688888766542 4568999999999987655
No 144
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.10 E-value=62 Score=21.45 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=20.9
Q ss_pred CCCCccccccCCCCCC-ceEecccCccchh
Q 027652 159 AAPTFSCPICMGPLSE-ATSTKCGHIFCKD 187 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~-pv~l~CgH~fC~~ 187 (220)
......|..|...+.- +..-.||.+||..
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 3445689999886443 4555899999975
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.90 E-value=34 Score=21.97 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=4.4
Q ss_pred ccccccCCCC
Q 027652 163 FSCPICMGPL 172 (220)
Q Consensus 163 ~~CpIC~~~~ 172 (220)
|.|..|...+
T Consensus 36 F~C~~C~~~L 45 (72)
T 1x4l_A 36 FNCKKCSLSL 45 (72)
T ss_dssp CBCSSSCCBC
T ss_pred CEeccCCCcC
Confidence 4444444443
No 146
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=26.87 E-value=7.9 Score=25.49 Aligned_cols=46 Identities=17% Similarity=0.397 Sum_probs=27.4
Q ss_pred CCCccccccCCCCCCceEe--cccCccchhHHHHHHhcC----CCCCCCCcccc
Q 027652 160 APTFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQ----GKCPNCRQKVG 207 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~----~~CP~Cr~~v~ 207 (220)
..+..|.||...- ...+ .|...|+..|+..-+... -.||.|...-.
T Consensus 6 ~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCCC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 3455799998642 1222 677778888876433321 25888865443
No 147
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.86 E-value=67 Score=21.92 Aligned_cols=29 Identities=21% Similarity=0.571 Sum_probs=21.0
Q ss_pred CCCCccccccCCCCCC-ceEecccCccchh
Q 027652 159 AAPTFSCPICMGPLSE-ATSTKCGHIFCKD 187 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~-pv~l~CgH~fC~~ 187 (220)
......|..|...+.- +..-.||.+||..
T Consensus 22 k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cccCccchhhcCcccccceEeccCCEeccc
Confidence 4456789999865443 4555899999975
No 148
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.17 E-value=49 Score=21.50 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCccccccCCCCC--CceEecccCccchhHHHHH
Q 027652 161 PTFSCPICMGPLS--EATSTKCGHIFCKDCIKGA 192 (220)
Q Consensus 161 ~~~~CpIC~~~~~--~pv~l~CgH~fC~~Ci~~~ 192 (220)
+=|.|..|...+. ......=|..||..|..+.
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 3467777777665 2233345567777776554
No 149
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.51 E-value=11 Score=25.38 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=28.7
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
.+-+.||+|...+.--. ....-.|+.|+..+...+=+++.|+..
T Consensus 8 LeiL~CP~ck~~L~~~~----------------~~g~LvC~~c~~~YPI~dGIPvmL~~E 51 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLE----------------SEQLLVNERLNLAYRIDDGIPVLLIDE 51 (67)
T ss_dssp TCCCBCTTTCCBCEEET----------------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred HHHhCCCCCCCcCeEeC----------------CCCEEEcCCCCccccCCCCEeeeChhH
Confidence 45678999998655211 011225777888787777778887764
No 150
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.64 E-value=43 Score=21.93 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=15.6
Q ss_pred ccccccCCCCCC-ceEecccCccchhHHHHH
Q 027652 163 FSCPICMGPLSE-ATSTKCGHIFCKDCIKGA 192 (220)
Q Consensus 163 ~~CpIC~~~~~~-pv~l~CgH~fC~~Ci~~~ 192 (220)
|.|..|...+.. .....=|..||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 556666655543 223344555666665443
No 151
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.48 E-value=30 Score=24.33 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=29.3
Q ss_pred CCCccccccCCCCCCceEe--cccCccchhHHHHHHhcCC----CCCCCCccc
Q 027652 160 APTFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQG----KCPNCRQKV 206 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~~----~CP~Cr~~v 206 (220)
.....|.+|...- ...+ .|.-.|+..|+.+-+.... .||.|...-
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 4456899998753 1222 6777788999866554322 699997543
No 152
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.22 E-value=6.8 Score=26.46 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=28.3
Q ss_pred CCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 160 APTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
.+.+.||+|...+.-... ...-.|+.|+..+...+=+++.|+..
T Consensus 6 LeiL~CP~ck~~L~~~~~----------------~~~LiC~~cg~~YPI~dGIPvmL~~e 49 (69)
T 2pk7_A 6 LDILACPICKGPLKLSAD----------------KTELISKGAGLAYPIRDGIPVMLESE 49 (69)
T ss_dssp GGTCCCTTTCCCCEECTT----------------SSEEEETTTTEEEEEETTEECCCGGG
T ss_pred HhheeCCCCCCcCeEeCC----------------CCEEEcCCCCcEecCcCCeeeeChhh
Confidence 455689999986652100 11225777888887777778877753
No 153
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.03 E-value=7 Score=26.46 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCCccccccCCCCCCceEecccCccchhHHHHHHhcCCCCCCCCccccCCCceeecCCCC
Q 027652 159 AAPTFSCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQGKCPNCRQKVGKRGIFRVYLPTL 219 (220)
Q Consensus 159 ~~~~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~~~CP~Cr~~v~~~~l~~iylp~~ 219 (220)
..+.+.||+|...+.-.. ....-.|+.|+..+...+=+++.|+..
T Consensus 5 LL~iL~CP~ck~~L~~~~----------------~~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQR----------------AQAELVCNADRLAFPVRDGVPIMLEAE 49 (70)
T ss_dssp CCCCCBCTTTCCBEEEET----------------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred HhhheECCCCCCcCEEeC----------------CCCEEEcCCCCceecCCCCeeeeChhh
Confidence 356678999998654210 011225778888887777778877753
No 154
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.03 E-value=36 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=14.4
Q ss_pred ccccccCCCCCCceEe-c-ccCccchhHHHH
Q 027652 163 FSCPICMGPLSEATST-K-CGHIFCKDCIKG 191 (220)
Q Consensus 163 ~~CpIC~~~~~~pv~l-~-CgH~fC~~Ci~~ 191 (220)
|.|..|...+...... . =|..||..|..+
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHR 72 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHH
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHH
Confidence 5566665555433222 1 245566666543
No 155
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.94 E-value=40 Score=22.07 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=13.4
Q ss_pred ccccccCCCCCCc-eEecccCccchhHHHH
Q 027652 163 FSCPICMGPLSEA-TSTKCGHIFCKDCIKG 191 (220)
Q Consensus 163 ~~CpIC~~~~~~p-v~l~CgH~fC~~Ci~~ 191 (220)
|.|..|...+... ....=|..||..|..+
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~ 71 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHH 71 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHH
Confidence 4555555544432 2223344555555543
No 156
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.31 E-value=24 Score=26.72 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=19.5
Q ss_pred ccccccCCCCC---Cce--EecccCccchhHHH
Q 027652 163 FSCPICMGPLS---EAT--STKCGHIFCKDCIK 190 (220)
Q Consensus 163 ~~CpIC~~~~~---~pv--~l~CgH~fC~~Ci~ 190 (220)
..|.+|...+. +.. -..|.|.+|..|-.
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 47999998773 222 23788889988853
No 157
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=22.00 E-value=21 Score=28.45 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=25.8
Q ss_pred cccccCCCCCCceEecccCccchhHHHHHHhcC----CCCCCCCccc
Q 027652 164 SCPICMGPLSEATSTKCGHIFCKDCIKGAIAAQ----GKCPNCRQKV 206 (220)
Q Consensus 164 ~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l~~~----~~CP~Cr~~v 206 (220)
.|.+|...-.--.--.|...|+..|+..-+... -.||.|...-
T Consensus 4 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 688888643211111577788888886544321 2699997653
No 158
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.89 E-value=48 Score=29.61 Aligned_cols=44 Identities=18% Similarity=0.520 Sum_probs=28.7
Q ss_pred CccccccCCCCCCceE--ecccCccchhHHHHHHhc---------C-CCCCCCCcc
Q 027652 162 TFSCPICMGPLSEATS--TKCGHIFCKDCIKGAIAA---------Q-GKCPNCRQK 205 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~--l~CgH~fC~~Ci~~~l~~---------~-~~CP~Cr~~ 205 (220)
...|.+|-+.-.--.- -.|...||..||...+-. . =.|=+|.-.
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4589999875421111 168899999999887731 1 168788543
No 159
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=21.10 E-value=37 Score=33.02 Aligned_cols=46 Identities=24% Similarity=0.604 Sum_probs=31.6
Q ss_pred CCccccccCCCCCCce----------EecccCcc--------------------chhHHHHHHhc--------CCCCCCC
Q 027652 161 PTFSCPICMGPLSEAT----------STKCGHIF--------------------CKDCIKGAIAA--------QGKCPNC 202 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv----------~l~CgH~f--------------------C~~Ci~~~l~~--------~~~CP~C 202 (220)
+.-.|+-|+..+.+|. -+.||..| |..|..+|... ...||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 4458999987777652 24677544 99999988652 1269999
Q ss_pred Cccc
Q 027652 203 RQKV 206 (220)
Q Consensus 203 r~~v 206 (220)
.=.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 6655
No 160
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.00 E-value=1e+02 Score=20.32 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=20.5
Q ss_pred CCCccccccCCCCCC-ceEecccCccchh
Q 027652 160 APTFSCPICMGPLSE-ATSTKCGHIFCKD 187 (220)
Q Consensus 160 ~~~~~CpIC~~~~~~-pv~l~CgH~fC~~ 187 (220)
.....|..|...+.- +..-.||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345689999986543 4555899999975
No 161
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.68 E-value=43 Score=22.01 Aligned_cols=33 Identities=18% Similarity=0.569 Sum_probs=19.5
Q ss_pred CCccccccCCCCCC--ceEe-cccCccchhHHHHHH
Q 027652 161 PTFSCPICMGPLSE--ATST-KCGHIFCKDCIKGAI 193 (220)
Q Consensus 161 ~~~~CpIC~~~~~~--pv~l-~CgH~fC~~Ci~~~l 193 (220)
+=|.|..|...+.. ...+ .=|..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 34677777776642 3332 455677777776554
No 162
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.62 E-value=19 Score=28.96 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCccccccCCCCCCceEe--cccCccchhHHHHHHhcC----CCCCCCCcccc
Q 027652 161 PTFSCPICMGPLSEATST--KCGHIFCKDCIKGAIAAQ----GKCPNCRQKVG 207 (220)
Q Consensus 161 ~~~~CpIC~~~~~~pv~l--~CgH~fC~~Ci~~~l~~~----~~CP~Cr~~v~ 207 (220)
....|.+|...-. ..+ .|...|+..|+..-+... -.||.|+..-.
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3456999986421 222 677789999976544322 26999976543
No 163
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.23 E-value=1.4e+02 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.636 Sum_probs=20.2
Q ss_pred CCCccccccCCCCC-CceEecccCccchh
Q 027652 160 APTFSCPICMGPLS-EATSTKCGHIFCKD 187 (220)
Q Consensus 160 ~~~~~CpIC~~~~~-~pv~l~CgH~fC~~ 187 (220)
.....|..|...+. .+..-.||..||..
T Consensus 23 ~~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 23 PKKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp SCTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeecCCCCEechh
Confidence 34568999988533 34566899999974
No 164
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.20 E-value=79 Score=23.75 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=27.2
Q ss_pred CccccccCCCCCCceEecccCccchhHHHHHH------hc---C--CCCCCCCc
Q 027652 162 TFSCPICMGPLSEATSTKCGHIFCKDCIKGAI------AA---Q--GKCPNCRQ 204 (220)
Q Consensus 162 ~~~CpIC~~~~~~pv~l~CgH~fC~~Ci~~~l------~~---~--~~CP~Cr~ 204 (220)
+..|.+|.+.-.-.---.|-..||..|+.+.+ .. . =.|+.|.-
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34699998643211111688899999998652 11 1 27999954
Done!