BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027653
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9X|D Chain D, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|H Chain H, The Crystal Structure Of Human Gins Core Complex
pdb|2Q9Q|B Chain B, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|F Chain F, The Crystal Structure Of Full Length Human Gins Complex
Length = 223
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 25/184 (13%)
Query: 6 GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
DG + E+ L E L+ AW NEK APE+L+ + +V+ EQ++ MEE +
Sbjct: 12 SDGGSEEV----VLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRR 67
Query: 66 YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSD 120
+ + L VS++QM+++R ++L SYLR RL K+EK+ ++ + E S LS
Sbjct: 68 ---AKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSP 124
Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDM---VPEPQLDTFIACK 177
E F + + + E +L+ L +P N Q V D+ VP+P LD+++ +
Sbjct: 125 EELAFAREFMANTESYLKNVALKHMPPNLQKV----------DLFRAVPKPDLDSYVFLR 174
Query: 178 ARNR 181
R R
Sbjct: 175 VRER 178
>pdb|2EHO|A Chain A, Crystal Structure Of Human Gins Complex
pdb|2EHO|E Chain E, Crystal Structure Of Human Gins Complex
pdb|2EHO|I Chain I, Crystal Structure Of Human Gins Complex
Length = 203
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 25/184 (13%)
Query: 6 GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
DG + E+ L E L+ AW NEK APE+L+ + +V+ EQ++ EE +
Sbjct: 2 SDGGSEEV----VLTPAELIERLEQAWXNEKFAPELLESKPEIVECVXEQLEHXEENLRR 57
Query: 66 YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSD 120
+ + L VS++Q + +R ++L SYLR RL K+EK+ ++ + E S LS
Sbjct: 58 ---AKREDLKVSIHQXEXERIRYVLSSYLRCRLXKIEKFFPHVLEKEKTRPEGEPSSLSP 114
Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDM---VPEPQLDTFIACK 177
E F + + E +L+ L P N Q V D+ VP+P LD+++ +
Sbjct: 115 EELAFAREFXANTESYLKNVALKHXPPNLQKV----------DLFRAVPKPDLDSYVFLR 164
Query: 178 ARNR 181
R R
Sbjct: 165 VRER 168
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 24 DAELLKTAWRNEKAA--PEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQM 81
D E L+T +N K P+I +F+ L E + E+ MDP T L Q+
Sbjct: 172 DDEELETILKNVKGNKNPQITRFKG-----------LGEMNAIQLRETTMDPNTRRLVQL 220
Query: 82 DLDRAHF 88
DLD AH
Sbjct: 221 DLDDAHL 227
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 24 DAELLKTAWRNEKAA--PEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQM 81
D E L+T +N K P+I +F+ L E + E+ MDP T L Q+
Sbjct: 172 DDEELETILKNVKGNKNPQITRFKG-----------LGEMNAIQLRETTMDPNTRRLVQL 220
Query: 82 DLDRAHF 88
DLD AH
Sbjct: 221 DLDDAHL 227
>pdb|3OS4|A Chain A, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
pdb|3OS4|B Chain B, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
Length = 407
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 52 AKEQIQLMEETVEEYEESGMDPLTVSLY---QMDLDRAHFLLRS-YLRVRL 98
+ + I+ E+ + YE+ G+DP L +DL++A FL R Y R++L
Sbjct: 285 SGDPIEWGEKAIAHYEKLGIDPXKKVLVFSDNLDLEKALFLYRHFYQRIKL 335
>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 36 KAAPEILQFQAPL---VKRAKEQIQLMEETVEEYE 67
KA E L++ P+ V++ KE+++L ++T+EE E
Sbjct: 242 KAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGE 276
>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 36 KAAPEILQFQAPL---VKRAKEQIQLMEETVEEYE 67
KA E L++ P+ V++ KE+++L ++T+EE E
Sbjct: 242 KAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGE 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,297,653
Number of Sequences: 62578
Number of extensions: 236323
Number of successful extensions: 874
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 16
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)