BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027653
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99LZ3|SLD5_MOUSE DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4
PE=1 SV=1
Length = 223
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Query: 6 GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
DG + EM L E L+ AW NEK APE+L+ +A +V+ EQ++ MEE +
Sbjct: 12 SDGGSEEM----VLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLRR 67
Query: 66 YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSR-----LSD 120
++ L VS+++M+++R ++L SYLR RL K+EK+ +I + E + S LS
Sbjct: 68 AKKGD---LKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLSP 124
Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
E +F + +D E H + L +P N Q V VP+P LD+++ + +
Sbjct: 125 EEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLLRA-------VPKPDLDSYVFLRVKE 177
Query: 181 R 181
R
Sbjct: 178 R 178
>sp|Q499W2|SLD5_RAT DNA replication complex GINS protein SLD5 OS=Rattus norvegicus
GN=Gins4 PE=2 SV=1
Length = 223
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 23/200 (11%)
Query: 23 TDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLY 79
T AEL L+ AW NEK APE+L+ ++ +V+ EQ++ MEE + ++ L VS++
Sbjct: 22 TPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRAKKGD---LKVSIH 78
Query: 80 QMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSDPEKMFVQRCIDDME 134
+M+++R ++L SYLR RL K+EK+ +I + E S LS E +F + +D E
Sbjct: 79 RMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPEEFVFAKEYMDHTE 138
Query: 135 KHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRL---ADSE 191
H + L +P N Q V VP+P LD+++ + + R ++ + AD +
Sbjct: 139 THFKNVALKHMPPNLQKVDLMRA-------VPKPDLDSYVFLRVKERQENILVEPEADEQ 191
Query: 192 RP--LEMERHDVSFVLYKVI 209
R +++E + YK I
Sbjct: 192 RDYVIDLEEGSQHLIRYKTI 211
>sp|Q9BRT9|SLD5_HUMAN DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4
PE=1 SV=1
Length = 223
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 25/184 (13%)
Query: 6 GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
DG + E+ L E L+ AW NEK APE+L+ + +V+ EQ++ MEE +
Sbjct: 12 SDGGSEEV----VLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRR 67
Query: 66 YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSD 120
+ + L VS++QM+++R ++L SYLR RL K+EK+ ++ + E S LS
Sbjct: 68 ---AKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSP 124
Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDM---VPEPQLDTFIACK 177
E F + + + E +L+ L +P N Q V D+ VP+P LD+++ +
Sbjct: 125 EELAFAREFMANTESYLKNVALKHMPPNLQKV----------DLFRAVPKPDLDSYVFLR 174
Query: 178 ARNR 181
R R
Sbjct: 175 VRER 178
>sp|A2VE40|SLD5_BOVIN DNA replication complex GINS protein SLD5 OS=Bos taurus GN=GINS4
PE=2 SV=1
Length = 223
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 20/182 (10%)
Query: 8 GSTAEMDDYETLMSTTDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE 64
G ++ D E ++ T AEL L+ AW NEK APE+L+ ++ +V+ EQ++ MEE ++
Sbjct: 9 GQDSDGDSEEVIL--TPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLEHMEENLK 66
Query: 65 EYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDP--- 121
++ L VS++QM+++R F+L SYLR RL K+EK+ + + E P
Sbjct: 67 RAKKGD---LKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRREEEPPILS 123
Query: 122 --EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR 179
E +F + + + E +L++T L +P N Q V VP+P LD ++ + +
Sbjct: 124 PEELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLRT-------VPKPDLDAYVFLRVK 176
Query: 180 NR 181
R
Sbjct: 177 ER 178
>sp|Q9P7C8|SLD5_SCHPO DNA replication complex GINS protein sld5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sld5 PE=1 SV=1
Length = 214
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 20/198 (10%)
Query: 23 TDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE-EYEESGMDPLTVSLYQM 81
D E L T W NE+ AP++L F +V R ++I+ ET++ S L Q
Sbjct: 18 NDYEDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSYRSVLMQT 77
Query: 82 DLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETV 141
+L+R F+LRSY+R R+ K++KY YI + +L LS PE+ ++ R + +H ++
Sbjct: 78 ELERVKFVLRSYMRTRINKIDKYAQYIQSHPNLLLYLSSPERQYLLRHQQIVHRHYMDSF 137
Query: 142 LSKLPDNYQSVRRQSVISEEDD------MVPEPQLDTFIACKARNRFV--SLRLADSERP 193
L ++P + +++ DD MV P +DT + C N V + R++++E
Sbjct: 138 LREVP---------AKMNKLDDKVGNLSMVASPDMDTAVFCVV-NESVEENFRVSENEY- 186
Query: 194 LEMERHDVSFVLYKVIED 211
+ +++ DV + Y VI D
Sbjct: 187 ITLDKGDVLILRYSVISD 204
>sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5 OS=Dictyostelium
discoideum GN=gins4 PE=3 SV=2
Length = 211
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 109/217 (50%), Gaps = 21/217 (9%)
Query: 15 DYETLMSTTDAEL-----LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEES 69
+Y +T + EL LK AW NEK AP +L ++ ++K E+I+ E +
Sbjct: 5 EYGDFNNTNNKELSLLDKLKKAWINEKYAPNLLNYEDVIIKEVMEKIEEKESLCASAISN 64
Query: 70 GMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIW---KNESL--WSRLSDPEKM 124
T ++Y+M+++R ++++ YL R++K++K+ I +N+ + LS+ E
Sbjct: 65 INLQFTANIYEMEIERLKYIIKCYLVQRIKKIDKFYSSILLEIENDEYDSYKLLSEFEIN 124
Query: 125 FVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVS 184
+ Q+ M+ + + T+L+ +P ++Q + S + P L+TF+ CK R
Sbjct: 125 YCQKYKALMDGYFKNTLLNSIPKDFQKMDSNS--------INRPFLNTFVFCKPREDLGD 176
Query: 185 LRLADSERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
L D E ++ ++ + F+ Y I+ + G +DL+
Sbjct: 177 F-LVDDE-TIDFKKTSIYFLKYLPIKSLVEGGKMDLI 211
>sp|Q2HE71|SLD5_CHAGB DNA replication complex GINS protein SLD5 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=SLD5 PE=3 SV=1
Length = 221
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 11/184 (5%)
Query: 24 DAELLKTAWRNEKAAPEILQFQA-PLVKRAKEQIQLMEETVEEYEESGMDPLT---VSLY 79
D + L AW E++APE+L + A L +R + I+ E VEE MDP T + +
Sbjct: 23 DLQELTRAWIAERSAPELLAWPADGLFERINDNIKQQIEKVEEMT-GDMDPKTNFALIVI 81
Query: 80 QMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEE 139
Q +L+R +L+RSYLR R+ K++++ + + L +RLS+ E + R + H
Sbjct: 82 QTELERYRYLVRSYLRARIAKIDRHTLHYLSTDDLRARLSEMELAYATRHQALLHNHYLS 141
Query: 140 TVLSKLPDNYQSVRRQSV-ISEEDDMVPEPQLDTFIACKA-RNRFVSLRLADSERPLEME 197
+ LS P N Q++ + IS M+ P L++ + +A ++ V R D++ +++
Sbjct: 142 SFLSSFPANLQNLNDAAAGIS----MIETPDLESAVFIRALKDTPVEARGVDTDAYADLK 197
Query: 198 RHDV 201
D+
Sbjct: 198 ESDI 201
>sp|Q4IQM6|SLD5_GIBZE DNA replication complex GINS protein SLD5 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=SLD5 PE=3 SV=2
Length = 221
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 24 DAELLKTAWRNEKAAPEILQFQA-PLVKRAKEQIQLMEETVEEYEESGMDPLT---VSLY 79
D + L W E++APE+L++ L +R +I+ E VE+ MDP T + +
Sbjct: 23 DLQALTRLWVAERSAPELLEWPTDGLFERVNARIKTQIEKVEDMT-GDMDPKTNFALIVI 81
Query: 80 QMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEE 139
Q +L+R FL+RS+LR RL K++K+ + ++ L RLS E + + + H
Sbjct: 82 QTELERYKFLMRSFLRARLAKIDKHTLHYLSSQELRDRLSPTELSYATKHQALLHNHYLS 141
Query: 140 TVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKA-RNRFVSLRLADSERPLEMER 198
+ L+ P Q++ + M+ P LDT + + R++ V + D++ L
Sbjct: 142 SFLASFPQQLQNLND---TAGNISMIDSPDLDTAVFIRMLRDKDVYGKGTDADITLPATN 198
Query: 199 HDVSFV 204
DV +
Sbjct: 199 GDVLII 204
>sp|Q6CKF3|SLD5_KLULA DNA replication complex GINS protein SLD5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SLD5 PE=3 SV=1
Length = 292
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 27/160 (16%)
Query: 12 EMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRA----KEQIQLMEET----V 63
++DDY+ L+ T W+NE+ +PE+L + L+ R +E+I+L+E +
Sbjct: 58 KIDDYQKLI---------THWKNERMSPELLPYPHHLMTRTLIRIQERIELIETLSMGYL 108
Query: 64 EEYEESGMDP-LTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWK-----NESLWSR 117
E+ +E +D L + + +L+R FL+RS++R RL K++KY Y+ + N + SR
Sbjct: 109 EDNQELTVDSKLPLLCMEAELERLKFLVRSFIRCRLSKIDKYSIYLRQQSELPNNAGLSR 168
Query: 118 L----SDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVR 153
L S E + + D + K VL LP+ Q+V
Sbjct: 169 LDLLMSKEEVKYHMKHSDILLKLFNNAVLKHLPEELQAVN 208
>sp|Q6CE80|SLD5_YARLI DNA replication complex GINS protein SLD5 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SLD5 PE=3 SV=1
Length = 260
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 24 DAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDP-----LTVSL 78
D + L +W E+ +P +L + L+ R +++QL E +EE + M P L + +
Sbjct: 63 DIKELTHSWVTERMSPTLLPTKEALLFRILKRVQLQIEVIEE-KSIDMSPDTDVKLELLI 121
Query: 79 YQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE 138
+ +L+R +L+RSYLRVRL K++ M Y + +S E+M++ R ++
Sbjct: 122 VETELERIKYLIRSYLRVRLLKIDNSMEYYQSSPLDRMNMSQTERMYLNRHYALLKNLYA 181
Query: 139 ETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLD 171
++ PD S+++ + S MV EP +D
Sbjct: 182 HQFMNTFPD---SLKQMNDSSGSASMVQEPNMD 211
>sp|Q753I0|SLD5_ASHGO DNA replication complex GINS protein SLD5 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SLD5 PE=3 SV=2
Length = 266
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 5 TGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQF----QAPLVKRAKEQIQLME 60
GD +T +DD ++ D L T W NE+ APE+L + A ++ R QI+ +E
Sbjct: 26 AGDDTT-RLDDSAATVAA-DYSTLVTHWCNERVAPELLPYPHTLMARVLARLAAQIEHLE 83
Query: 61 ETVEEYEESGMD---PLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNE----- 112
E +D L + + +L+R F++RS LR RL K++++ Y+ + +
Sbjct: 84 TLSTGVLEQTLDRSAKLPLLCMEAELERLKFVVRSLLRCRLGKIDRFGLYLRQLDARSPG 143
Query: 113 SLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSV 152
+L + LS E+++ +R + K +L +P Q+V
Sbjct: 144 ALQTLLSAQERVYYERHSAILLKLFNNAILRHMPAEMQAV 183
>sp|Q03406|SLD5_YEAST DNA replication complex GINS protein SLD5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SLD5 PE=1
SV=1
Length = 294
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 8 GSTAEMDDYETLMSTTDAEL--LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
GS+ +++D + + + L +W+NE+ +PE+L + L+KR +I + + +E
Sbjct: 41 GSSLDLNDKTQIYVSPQQDFSDLMKSWKNERCSPELLPYPHQLMKRLLNRISMQSQLIEN 100
Query: 66 Y--------EESGMDP-------LTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYI 108
S +P L + + +L+R F++RSY+R RL K++K+ Y+
Sbjct: 101 ISMGFLDMQNASNANPPMPNESKLPLLCMETELERLKFVIRSYIRCRLSKIDKFSLYL 158
>sp|Q6BXX6|SLD5_DEBHA DNA replication complex GINS protein SLD5 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SLD5 PE=3 SV=1
Length = 245
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 28 LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETV---EEYEESGMDPLTVS------- 77
L A NE+ +P++L ++ L+K Q+ ++ + EY +S ++ V+
Sbjct: 38 LVAAMLNERMSPDVLPYKHELMKEVLTQLSNQQQYLLDSHEYGDSNVESGIVTGDFKLQL 97
Query: 78 -LYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKH 136
+ + D++R ++L+R YLR RL K++K+ + + NE+ ++ + + M KH
Sbjct: 98 MIIETDIERLNYLVRLYLRTRLAKIDKFTIH-YINETSNDDPTNDRSLLSPEETEYMHKH 156
Query: 137 LEETVLSKLPDNYQSVRRQSVISEEDD------MVPEPQLDTFIACKARNRFVSLRLADS 190
+ +L++L +N + ++ DD M+ P ++ + K + + D
Sbjct: 157 FK--ILTQLYNNSFLKKMPHFLTLLDDTSGGQSMISVPDINQPVFIKVITKVPIIINLDE 214
Query: 191 ERPLEMERHDVSFVLYKVIEDKIG-ADIDLV 220
+ LE+ + + V Y +I+ I DI L+
Sbjct: 215 DEDLELVENGIYVVKYSLIKKYIEIGDIVLI 245
>sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SLD5 PE=3 SV=1
Length = 309
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 15 DYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE---------- 64
DY + D L WRNE+ APE+L LV R ++IQ E +E
Sbjct: 57 DYSPVTPEQDYLQLLKHWRNERCAPELLPLPKLLVSRMLKRIQDQMEHIENISMGFLEHE 116
Query: 65 -------------EYEESGMDPLTVSLYQMD--LDRAHFLLRSYLRVRLQKLEKYMFYIW 109
EY+ + ++ + L M+ L+R F++RSYLR RL K++KY Y+
Sbjct: 117 ILEKDGEEAIGQNEYQNNALNNGKLPLLCMEAELERVKFVMRSYLRCRLNKIDKYSLYLR 176
Query: 110 KNESLWSRLSDPEKMFVQRCIDDMEKH-------LEETVLSKLPDNYQSVR-RQSVISEE 161
+ L +++ ++ + KH L ++L +P Q++ + +S
Sbjct: 177 QLGDQGINLISLDELMSEQELKYHAKHSVILLKLLNNSILRHMPPELQAINDTEGSVS-- 234
Query: 162 DDMVPEPQLDTFI 174
M+ EP F+
Sbjct: 235 --MIEEPNWKKFV 245
>sp|Q57986|FEOB_METJA Ferrous iron transport protein B homolog OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0566 PE=1 SV=1
Length = 668
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 77 SLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKH 136
S+ Q D D + LR YL ++L + +KY+ I KN +W+ L K + I+++ K
Sbjct: 185 SILQKDEDLKKYNLR-YLAIKLLENDKYVEEIVKNSKVWNEL----KPVLDSIINELSKK 239
Query: 137 LEETVLSKLPDNYQSVRR 154
E L + + Y+ + +
Sbjct: 240 YGEAELGIVEERYKVIDK 257
>sp|Q6BJ61|PMIP_DEBHA Mitochondrial intermediate peptidase OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=OCT1 PE=3 SV=2
Length = 794
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 46 APLVKRAKEQIQLMEETVEEYEESG--MDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEK 103
A K +KE+I++ E +++E SG MDP T + + + + + LL S+ + LE
Sbjct: 190 AITTKLSKEEIEVGEYLRQDFERSGIHMDPNTRNNF-VAITQEISLLGSHFNNDIHSLES 248
Query: 104 YM-------------------FYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSK 144
Y Y +++ S S+ D +++ + H+ T+LSK
Sbjct: 249 YWCNISRSEFDKISDTVVKSEIYGYQSSSPASQNKDSGNIYIP-----LAGHIPYTILSK 303
Query: 145 LPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLR 186
+SVRR+ IS + P+ Q+DT N FV R
Sbjct: 304 C--EVESVRRKVWISLHNS--PKEQIDTL------NAFVKYR 335
>sp|A8W3D2|CEMA_CUSEX Plastid envelope membrane protein OS=Cuscuta exaltata GN=cemA PE=3
SV=1
Length = 229
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 106 FYIWKNESL-----WSR-----LSDPEKMF-----VQRCIDDMEKHLEETVLSKLPDNYQ 150
FYIW+NE+L WSR LSD K+F CI H E ++ + ++
Sbjct: 123 FYIWRNETLVILNSWSREFLYNLSDTVKVFSILLLTDLCIGFHSPHGWELMIGSIYQDFG 182
Query: 151 SVRRQSVISEEDDMVP 166
V+ +IS P
Sbjct: 183 FVQNDRIISGLVSTFP 198
>sp|P43076|PHR1_CANAL pH-responsive protein 1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PHR1 PE=2 SV=3
Length = 548
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 89 LLRSYLRV--RLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLP 146
L + Y +V ++Q+ + + NE +R + FV+ I DM+K+++E+ ++P
Sbjct: 144 LYKRYTKVIDKMQEYSNVLGFFAGNEVTNNRSNTDASAFVKAAIRDMKKYIKESDYRQIP 203
Query: 147 DNYQS 151
Y S
Sbjct: 204 VGYSS 208
>sp|B5Z6I0|DAPA_HELPG 4-hydroxy-tetrahydrodipicolinate synthase OS=Helicobacter pylori
(strain G27) GN=dapA PE=3 SV=1
Length = 300
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 44 FQAPLVKRAKEQIQLMEETVEEYE 67
++ PLV +KE IQL+E+T+++YE
Sbjct: 274 YRLPLVAPSKETIQLLEKTLQQYE 297
>sp|Q1CU72|DAPA_HELPH 4-hydroxy-tetrahydrodipicolinate synthase OS=Helicobacter pylori
(strain HPAG1) GN=dapA PE=3 SV=1
Length = 300
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 44 FQAPLVKRAKEQIQLMEETVEEYE 67
++ PLV +KE IQL+E+T+++YE
Sbjct: 274 YRLPLVAPSKETIQLLEKTLQQYE 297
>sp|B6JL09|DAPA_HELP2 4-hydroxy-tetrahydrodipicolinate synthase OS=Helicobacter pylori
(strain P12) GN=dapA PE=3 SV=1
Length = 300
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 44 FQAPLVKRAKEQIQLMEETVEEYE 67
++ PLV +KE IQL+E+T+++YE
Sbjct: 274 YRLPLVAPSKETIQLLEKTLQQYE 297
>sp|O25657|DAPA_HELPY 4-hydroxy-tetrahydrodipicolinate synthase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=dapA PE=3 SV=1
Length = 300
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 44 FQAPLVKRAKEQIQLMEETVEEYE 67
++ PLV +KE IQL+E+T+++YE
Sbjct: 274 YRLPLVAPSKETIQLLEKTLQQYE 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,972,760
Number of Sequences: 539616
Number of extensions: 3114476
Number of successful extensions: 10311
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 10261
Number of HSP's gapped (non-prelim): 64
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)