Query 027653
Match_columns 220
No_of_seqs 105 out of 351
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3176 Predicted alpha-helica 100.0 7.5E-53 1.6E-57 348.0 19.9 200 15-220 18-223 (223)
2 COG5086 Uncharacterized conser 100.0 3.4E-40 7.3E-45 265.6 17.2 196 21-220 20-218 (218)
3 KOG3303 Predicted alpha-helica 100.0 2.3E-30 4.9E-35 209.5 16.8 177 20-218 3-190 (192)
4 COG5230 Uncharacterized conser 99.9 6.2E-23 1.4E-27 163.2 15.2 163 37-219 19-193 (194)
5 PF05916 Sld5: GINS complex pr 98.0 1.4E-05 3E-10 59.3 5.3 40 84-123 65-108 (108)
6 COG1711 DNA replication initia 96.7 0.045 9.9E-07 46.5 12.4 112 24-138 2-113 (223)
7 COG3450 Predicted enzyme of th 49.3 18 0.00038 27.9 2.8 33 172-205 63-95 (116)
8 PF14452 Multi_ubiq: Multiubiq 49.3 40 0.00087 23.1 4.4 35 171-206 34-69 (72)
9 PRK14102 nifW nitrogenase stab 47.0 71 0.0015 24.2 5.6 48 96-146 33-80 (105)
10 PF06384 ICAT: Beta-catenin-in 42.2 85 0.0018 22.5 5.1 25 114-138 29-53 (78)
11 TIGR03412 iscX_yfhJ FeS assemb 41.7 33 0.00071 23.6 2.8 22 15-36 41-62 (63)
12 PF02311 AraC_binding: AraC-li 36.4 45 0.00098 24.2 3.3 37 170-208 21-57 (136)
13 PF08916 Phe_ZIP: Phenylalanin 35.5 84 0.0018 21.3 4.0 36 103-140 21-56 (59)
14 PF05899 Cupin_3: Protein of u 34.7 38 0.00081 23.4 2.4 32 171-206 26-58 (74)
15 COG3435 Gentisate 1,2-dioxygen 33.4 47 0.001 30.0 3.3 35 169-206 279-313 (351)
16 PF12852 Cupin_6: Cupin 31.4 81 0.0018 25.3 4.2 41 168-208 31-71 (186)
17 PF11699 CENP-C_C: Mif2/CENP-C 30.1 54 0.0012 23.7 2.6 34 171-207 33-66 (85)
18 PF07883 Cupin_2: Cupin domain 29.9 77 0.0017 20.6 3.3 32 174-207 21-52 (71)
19 PRK10470 ribosome hibernation 28.7 41 0.00089 24.2 1.8 20 90-109 16-35 (95)
20 KOG2253 U1 snRNP complex, subu 27.7 1E+02 0.0022 30.5 4.7 38 23-60 591-628 (668)
21 COG3022 Uncharacterized protei 25.9 1.3E+02 0.0029 26.3 4.7 23 116-138 92-114 (253)
22 PRK10721 hypothetical protein; 24.3 78 0.0017 22.0 2.4 19 18-36 47-65 (66)
23 PRK00810 nifW nitrogenase stab 22.6 3E+02 0.0064 21.1 5.6 46 96-146 37-82 (113)
24 PF08375 Rpn3_C: Proteasome re 22.3 63 0.0014 22.5 1.7 10 84-93 14-23 (68)
25 PF10168 Nup88: Nuclear pore c 22.0 8.3E+02 0.018 24.7 11.3 20 116-135 628-647 (717)
26 cd08337 DED_c-FLIP_repeat1 Dea 21.5 1.9E+02 0.0041 20.7 4.1 57 79-139 14-74 (80)
27 cd00552 RaiA RaiA ("ribosome-a 20.9 91 0.002 21.9 2.4 16 90-105 15-30 (93)
28 PF15640 Tox-MPTase4: Metallop 20.3 1.8E+02 0.004 22.8 4.0 35 96-133 95-129 (132)
No 1
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-53 Score=348.02 Aligned_cols=200 Identities=40% Similarity=0.598 Sum_probs=179.4
Q ss_pred chhccCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 027653 15 DYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYL 94 (220)
Q Consensus 15 ~~~~~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYl 94 (220)
+++.++++++++.|+++|+|||||||||||+.++|+++++||+.|++++..-.++ .++..++|+||++|+||+++||+
T Consensus 18 ~~~~~t~~~~le~L~~aW~NEk~APeLLp~~~elve~~ldqIe~~eE~i~~~a~~--~dlr~~~~qmELERvkfvlrSYl 95 (223)
T KOG3176|consen 18 DYETLTPEEDLEDLETAWQNEKCAPELLPYALELVERLLDQIEHMEETIERKASN--KDLRVSLHQMELERVKFVLRSYL 95 (223)
T ss_pred cceecCcHHHHHHHHHHHhhhccChhhcCChHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999999999999999633222 35999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhcccccc----cCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCCC
Q 027653 95 RVRLQKLEKYMFYIWKNESLW----SRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQL 170 (220)
Q Consensus 95 R~RL~KIe~~~~~~~~~~e~~----~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~~ 170 (220)
||||+||++|+.|+++.++.+ ++||+.|++|+++|+.++++||..++|+++|+++|.. ++..+...||++|++
T Consensus 96 RcRL~KIekf~~~~ln~ee~re~~~~~LS~~E~kfa~~~a~~~~k~~~~~~l~~mp~~~~~~---~dkv~~~~~v~~p~~ 172 (223)
T KOG3176|consen 96 RCRLQKIEKFLQHILNQEELREGALSLLSEEELKFAEEYADILKKHFVDVVLQKMPENLQEN---DDKVGFVCMVDKPDL 172 (223)
T ss_pred HHHHHHHHhhhHHhhcchhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH---HhhhceeEEEecCCC
Confidence 999999999999999988765 7899999999999999999999999999999999876 333345579999999
Q ss_pred CceEEEEEcccCCc-eecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653 171 DTFIACKARNRFVS-LRLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDLV 220 (220)
Q Consensus 171 d~~Vfvrvl~d~g~-v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI 220 (220)
|++|||+|+.+..+ |..++++ .++|.||++|++||..|.+||+. .|.||
T Consensus 173 ~s~Vf~~vn~~~~~~~~~~D~e-~~el~~gs~~viry~~v~dll~~~~V~Li 223 (223)
T KOG3176|consen 173 DSRVFIKVNESVEETVAVPDDE-LLELTKGSQHVIRYEVVSDLLRDGEVQLI 223 (223)
T ss_pred ceeEEEEeccccccceeecCcc-cccccccceeeeeHHHHHHHHhcCCeeeC
Confidence 99999999987655 4555554 69999999999999999999999 99986
No 2
>COG5086 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.4e-40 Score=265.55 Aligned_cols=196 Identities=24% Similarity=0.354 Sum_probs=168.8
Q ss_pred ChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653 21 STTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE-YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQ 99 (220)
Q Consensus 21 ~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~-~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~ 99 (220)
+..+++.|..+|+|||+||+||||...+|++++++|..|.+.++- +..+...+-.-.++++|+||+||++++|+||||.
T Consensus 20 ~~~d~~DL~~~w~NEr~tp~LLPya~~li~r~LdrIs~q~e~v~ia~g~S~a~~~~S~lMetElERvKFvvrsYirtRl~ 99 (218)
T COG5086 20 SFPDLNDLILAWQNERSTPRLLPYALHLIDRFLDRISEQTEHVKIALGKSIAKNNESILMETELERVKFVVRSYIRTRLK 99 (218)
T ss_pred CcCCHHHHHHHHhccccCccccCcHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998872 2222122233445799999999999999999999
Q ss_pred HHHHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCCCCceEEEEEc
Q 027653 100 KLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR 179 (220)
Q Consensus 100 KIe~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~~d~~Vfvrvl 179 (220)
||.+|+.|..++|...-.||..|++|..+++....+|++.++|..+|+.++++ .+..+...|+.+|++|+||||-|+
T Consensus 100 Kidk~~~y~~s~~N~LilLS~~E~~y~~~Hs~I~~~l~~ds~l~~~p~k~~kv---~d~vG~~~m~dePD~nk~Vf~~Vn 176 (218)
T COG5086 100 KIDKNLYYDLSDENSLILLSGGELAYYEKHSLIYIDLLKDSDLYVTPQKFHKV---HDFVGFYCMTDEPDWNKFVFGAVN 176 (218)
T ss_pred HhhhhHHHhhcCCceeeEecchhHHHHHHhhHHHHHHHHhhHHHHhHHHHHHH---HhhccceeeecCCCccceeEEEEc
Confidence 99999999999877656799999999999999999999999999999999998 344445589999999999999999
Q ss_pred ccCCc-eecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653 180 NRFVS-LRLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDLV 220 (220)
Q Consensus 180 ~d~g~-v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI 220 (220)
.|..+ ..++.. +.++|.||++|++||+.|.++++. .|.||
T Consensus 177 EdlqEN~~V~ek-E~~el~kGd~~v~ry~vI~D~Lr~~~V~Li 218 (218)
T COG5086 177 EDLQENDTVGEK-ELLELFKGDFFVARYDVIMDFLRRNEVILI 218 (218)
T ss_pred chhhhccccchh-heeeeecCcEEEEEHHHHHHHHhcCceeeC
Confidence 87554 223333 369999999999999999999999 99886
No 3
>KOG3303 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=99.97 E-value=2.3e-30 Score=209.54 Aligned_cols=177 Identities=17% Similarity=0.284 Sum_probs=142.8
Q ss_pred CChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHH----HhcCCCc----hhHHHHHHHHHHHHHHHH
Q 027653 20 MSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY----EESGMDP----LTVSLYQMDLDRAHFLLR 91 (220)
Q Consensus 20 ~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~----~~~~~~~----~~~~l~~~eleRik~ll~ 91 (220)
.++...+.+..+=.++.. .|+||++++|+.+.++|.+...+.+.+ ...++++ ..+.++|..++|+|+|+.
T Consensus 3 ~g~kg~~Li~d~kr~~~~--~Lppyn~d~ir~i~~E~~~l~~~~~~i~~~~~~g~~~d~~~~~~~~m~h~~~~RNkRClm 80 (192)
T KOG3303|consen 3 FGEKGLQLILDLKRTPLG--QLPPYNEDLIRQILEEIDALDARNESIKQKAQSGGSDDNLLPVNYLMMHLSLERNKRCLM 80 (192)
T ss_pred hhHHHHHHHHHHhhCccc--cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHhHHHHH
Confidence 344555555555543333 489999999999999999876543333 2333333 457789999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhcc--cccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCC
Q 027653 92 SYLRVRLQKLEKYMFYIWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQ 169 (220)
Q Consensus 92 sYlR~RL~KIe~~~~~~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~ 169 (220)
||++.|+..|..++|-++.. ..++..||.+|.+|+++|+.+++.|+.+..++ ...+|+ ||
T Consensus 81 AY~~~R~~~lr~~~W~~g~~lps~i~~sls~~E~eyf~~Ys~~La~y~~~~gid----------------l~~~~v--PP 142 (192)
T KOG3303|consen 81 AYVYLRLARLRDLAWSYGLDLPSSIRFSLSHEEEEYFKNYSNLLAEYMGPLGID----------------LTGDMV--PP 142 (192)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHhhhHHHHHHHHHHHHHHHHHhcCccch----------------hccCcC--CC
Confidence 99999999999999999954 34566799999999999999999998864211 134555 99
Q ss_pred CCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccc
Q 027653 170 LDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGA-DID 218 (220)
Q Consensus 170 ~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~ 218 (220)
+|.||.|||++|+|+|++++| +|+|.|+++|++|..+|++||.| -|.
T Consensus 143 k~lfI~VR~LkD~Ge~ete~g--~inL~KdS~hfl~r~d~E~LI~qG~v~ 190 (192)
T KOG3303|consen 143 KDLFIQVRVLKDYGEFETEDG--TINLKKDSQHFLKRTDCERLIAQGFVL 190 (192)
T ss_pred ccceEEEEEecccCceeecCC--eEEeeccchhhccHhHHHHHHHccchh
Confidence 999999999999999999987 79999999999999999999999 564
No 4
>COG5230 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=6.2e-23 Score=163.20 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=126.4
Q ss_pred cCCCcCCCChHHHHHHHHHHHHHHH----HHHHHHhc--CCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027653 37 AAPEILQFQAPLVKRAKEQIQLMEE----TVEEYEES--GMD---PLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFY 107 (220)
Q Consensus 37 ~aPeLLpy~~~lV~~v~~~I~~q~e----~l~~~~~~--~~~---~~~~~l~~~eleRik~ll~sYlR~RL~KIe~~~~~ 107 (220)
.-| |+||+.+.|+.+..+++.... .+++.+.. +.| +....+.....+|||+||+||.+.|.+.+..++|-
T Consensus 19 Ld~-lp~Y~~d~i~~i~~E~~~ldr~~~eilqeasq~g~~~d~~~~~~y~~m~~~~erNkRcL~aY~~lR~~~L~~~~ws 97 (194)
T COG5230 19 LDP-LPPYRRDEIKAIEGENEHLDRRMEEILQEASQAGSGIDEELSVNYVMMKYFKERNKRCLRAYKFLRSAALFDSFWS 97 (194)
T ss_pred ccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 456 999999999999999988742 23322211 112 23455566677799999999999999999999997
Q ss_pred hhcc--cccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCCCCceEEEEEcccCCce
Q 027653 108 IWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSL 185 (220)
Q Consensus 108 ~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~~d~~Vfvrvl~d~g~v 185 (220)
-+.. .-....||..|.+|+++|+.++..|... |..+ |- .....||.+.||-|||++|||.|
T Consensus 98 ~gk~m~s~~dt~LSh~E~eyl~~Ys~ll~~ykg~---------~~~i-------Dl-tgslvPP~~~FidVrvLkD~G~i 160 (194)
T COG5230 98 KGKRMKSVGDTMLSHEEEEYLEKYSNLLREYKGP---------FKHI-------DL-TGSLVPPVQFFIDVRVLKDCGVI 160 (194)
T ss_pred CCcchhhhhccccchHHHHHHHHHHHHHHHHhCC---------ceee-------cc-ccccCCchheeEEeEeecccchh
Confidence 7553 1122369999999999999999999532 2223 21 22355999999999999999999
Q ss_pred ecCCCCcceeeecCCEEEEEhhhHHHHHhh-cccc
Q 027653 186 RLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDL 219 (220)
Q Consensus 186 ~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~L 219 (220)
+++.| +++|.|+++|++|-++|++||.| -+.-
T Consensus 161 ~tEyg--~inL~Kdsq~fvr~~dverLI~qGfl~k 193 (194)
T COG5230 161 MTEYG--LINLKKDSQYFVRKNDVERLIDQGFLRK 193 (194)
T ss_pred ccccc--eEEeeccchhhhhHhHHHHHHHhhhhhc
Confidence 99886 79999999999999999999998 6543
No 5
>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.
Probab=97.98 E-value=1.4e-05 Score=59.30 Aligned_cols=40 Identities=33% Similarity=0.562 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHh----hcccccccCCCHHHH
Q 027653 84 DRAHFLLRSYLRVRLQKLEKYMFYI----WKNESLWSRLSDPEK 123 (220)
Q Consensus 84 eRik~ll~sYlR~RL~KIe~~~~~~----~~~~e~~~~LS~~E~ 123 (220)
+|+|+||.+|+++|+.||.+++|++ ....+..++||+.|+
T Consensus 65 ~~ik~~l~~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er 108 (108)
T PF05916_consen 65 ERIKRLLRDYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence 9999999999999999999999999 233556789999985
No 6
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=96.72 E-value=0.045 Score=46.50 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653 24 DAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEK 103 (220)
Q Consensus 24 ~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~KIe~ 103 (220)
+++.|.++.-.|++.-.|---+++.=..+-.-|+.++......... .++...+....+++++...++-..-|+.||-+
T Consensus 2 ~i~eLR~~~~kErS~~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~--~D~e~~~~~~~~et~~~~~r~ifqrR~~Kiv~ 79 (223)
T COG1711 2 DIEELRRALYKERSQDGLTEIDEDFYRDVRSFIKELEDEAGRAEEA--RDIEKYLLTDRIETAKSDARSIFQRRYGKIVS 79 (223)
T ss_pred CHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHhhccccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999998999999999999999999998877655432 45555555558999999999999999999999
Q ss_pred hHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHH
Q 027653 104 YMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE 138 (220)
Q Consensus 104 ~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~ 138 (220)
-||+-....- .++|+++|++|+....+.+....-
T Consensus 80 ~A~~~~~~~~-~~~Lt~eEk~ly~~l~~~I~~e~~ 113 (223)
T COG1711 80 RAIYDVPGET-ISNLTPEEKELYEDLVNFIEDERI 113 (223)
T ss_pred HHHHhccccc-hhcCCHHHHHHHHHHHHHHhhchh
Confidence 9998776433 578999999999999888877644
No 7
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=49.28 E-value=18 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=24.2
Q ss_pred ceEEEEEcccCCceecCCCCcceeeecCCEEEEE
Q 027653 172 TFIACKARNRFVSLRLADSERPLEMERHDVSFVL 205 (220)
Q Consensus 172 ~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~ 205 (220)
.+=||.++.....+. ++|++.+.+++|+.+++|
T Consensus 63 ~~E~chil~G~v~~T-~d~Ge~v~~~aGD~~~~~ 95 (116)
T COG3450 63 EDEFCHILEGRVEVT-PDGGEPVEVRAGDSFVFP 95 (116)
T ss_pred cceEEEEEeeEEEEE-CCCCeEEEEcCCCEEEEC
Confidence 455888888555444 444458999999999986
No 8
>PF14452 Multi_ubiq: Multiubiquitin
Probab=49.27 E-value=40 Score=23.10 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=25.4
Q ss_pred CceEEEEEcccCCceecCCCCcceee-ecCCEEEEEh
Q 027653 171 DTFIACKARNRFVSLRLADSERPLEM-ERHDVSFVLY 206 (220)
Q Consensus 171 d~~Vfvrvl~d~g~v~l~~g~~~v~L-~kg~i~~l~y 206 (220)
+.++++++..+-..-.+..|+ +|+| .+|--+++-.
T Consensus 34 ~~~~~~~~~~~~~~~~i~~~e-~Vdl~~~G~e~fvt~ 69 (72)
T PF14452_consen 34 DEYVYLQIRPGGPDGEIRPGE-SVDLRKPGMEFFVTA 69 (72)
T ss_pred ccEEEEEEccCCCccEeCCCC-EEEECCCCeEEEEee
Confidence 378999998665555666665 7999 7777777643
No 9
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=46.97 E-value=71 Score=24.21 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027653 96 VRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLP 146 (220)
Q Consensus 96 ~RL~KIe~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p 146 (220)
.||+-+.+|..|+-...+...-+|+.|+ ...|..+|.+=|.. |+..-|
T Consensus 33 ~RLHILkrf~qyl~~~~~~~~~~~e~~~--~~~yr~~L~~AY~d-F~~Stp 80 (105)
T PRK14102 33 NRLHILKQFSQLIAEIDANFPDLSEEEK--LEKYQLALEEAYQV-FLTSTP 80 (105)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCHHHH--HHHHHHHHHHHHHH-HccCCh
Confidence 5888899999888763322245777666 78888888887665 554444
No 10
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=42.18 E-value=85 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHH
Q 027653 114 LWSRLSDPEKMFVQRCIDDMEKHLE 138 (220)
Q Consensus 114 ~~~~LS~~E~~f~~~y~~ll~~~~~ 138 (220)
+-+.|||+|..|...|+.....-|.
T Consensus 29 Lge~Ls~eE~~FL~~~~~~~ls~Fe 53 (78)
T PF06384_consen 29 LGEKLSPEEEAFLEAHSSASLSQFE 53 (78)
T ss_dssp TT----HHHHHHHHHTHHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHhhHHHHHHH
Confidence 3467999999999999876654433
No 11
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=41.69 E-value=33 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.5
Q ss_pred chhccCChHHHHHHHHHHHhhh
Q 027653 15 DYETLMSTTDAELLKTAWRNEK 36 (220)
Q Consensus 15 ~~~~~~~~~~~~~L~~~w~NEk 36 (220)
|...-.++..++.+..+|+.|+
T Consensus 41 Ddp~~~~EkiLEaIQ~aWieE~ 62 (63)
T TIGR03412 41 DDPKRCNEKILEAIQMAWIDER 62 (63)
T ss_pred CCcccccHHHHHHHHHHHHHhh
Confidence 3444567899999999999885
No 12
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=36.45 E-value=45 Score=24.17 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=25.1
Q ss_pred CCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhhh
Q 027653 170 LDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKV 208 (220)
Q Consensus 170 ~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~~ 208 (220)
.+.|.++-|.+..|.+.+++ ....+.+|++.+++=..
T Consensus 21 h~~~~i~~v~~G~~~~~~~~--~~~~l~~g~~~li~p~~ 57 (136)
T PF02311_consen 21 HDFYEIIYVLSGEGTLHIDG--QEYPLKPGDLFLIPPGQ 57 (136)
T ss_dssp T-SEEEEEEEEE-EEEEETT--EEEEE-TT-EEEE-TTS
T ss_pred CCCEEEEEEeCCEEEEEECC--EEEEEECCEEEEecCCc
Confidence 35788888999888888865 46889999999887543
No 13
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=35.51 E-value=84 Score=21.29 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.4
Q ss_pred HhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 027653 103 KYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEET 140 (220)
Q Consensus 103 ~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~ 140 (220)
+|..|+-.+|+....+| ...|.++|..+...||.+-
T Consensus 21 ~~~~f~~~nP~~a~~~~--~~~F~~kF~d~F~~hF~~E 56 (59)
T PF08916_consen 21 AFRRFINENPQYARPLS--HRSFSRKFADLFQEHFENE 56 (59)
T ss_dssp HHHHHHHH-GGG-STTH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 45556666777644554 4799999999999998864
No 14
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=34.71 E-value=38 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=20.5
Q ss_pred CceEEEEEcccCCceecCC-CCcceeeecCCEEEEEh
Q 027653 171 DTFIACKARNRFVSLRLAD-SERPLEMERHDVSFVLY 206 (220)
Q Consensus 171 d~~Vfvrvl~d~g~v~l~~-g~~~v~L~kg~i~~l~y 206 (220)
+.+++ ++. |.+.+.+ +++...+.+|+.+++|-
T Consensus 26 ~E~~~--vle--G~v~it~~~G~~~~~~aGD~~~~p~ 58 (74)
T PF05899_consen 26 DEFFY--VLE--GEVTITDEDGETVTFKAGDAFFLPK 58 (74)
T ss_dssp EEEEE--EEE--EEEEEEETTTEEEEEETTEEEEE-T
T ss_pred CEEEE--EEE--eEEEEEECCCCEEEEcCCcEEEECC
Confidence 55554 555 5554433 33489999999999874
No 15
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.41 E-value=47 Score=29.99 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=26.5
Q ss_pred CCCceEEEEEcccCCceecCCCCcceeeecCCEEEEEh
Q 027653 169 QLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLY 206 (220)
Q Consensus 169 ~~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y 206 (220)
-.+..||+ |.+..|.+++++ +..+.+.|+++++|-
T Consensus 279 ~t~s~iy~-V~eGsg~~~Ig~--~rf~~~~~D~fvVPs 313 (351)
T COG3435 279 HTDSTIYH-VVEGSGYTIIGG--ERFDWSAGDIFVVPS 313 (351)
T ss_pred ccCCEEEE-EEecceeEEECC--EEeeccCCCEEEccC
Confidence 35677887 556678888854 579999999999873
No 16
>PF12852 Cupin_6: Cupin
Probab=31.37 E-value=81 Score=25.31 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.2
Q ss_pred CCCCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhhh
Q 027653 168 PQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKV 208 (220)
Q Consensus 168 P~~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~~ 208 (220)
|....-.|.-|.+..+-+.+++++..+.|..|++.++|...
T Consensus 31 ~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~ 71 (186)
T PF12852_consen 31 PGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGT 71 (186)
T ss_pred cCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCC
Confidence 44445666667776666666663458999999999998764
No 17
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=30.09 E-value=54 Score=23.70 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=22.3
Q ss_pred CceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 171 DTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 171 d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
+.+||+ |.+..-.|.+.+ ....+.+|+.+.+|..
T Consensus 33 ~~~vF~-V~~G~v~Vti~~--~~f~v~~G~~F~VP~g 66 (85)
T PF11699_consen 33 NTMVFY-VIKGKVEVTIHE--TSFVVTKGGSFQVPRG 66 (85)
T ss_dssp EEEEEE-EEESEEEEEETT--EEEEEETT-EEEE-TT
T ss_pred cEEEEE-EEeCEEEEEEcC--cEEEEeCCCEEEECCC
Confidence 356666 666455566655 4688999999999874
No 18
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=29.90 E-value=77 Score=20.63 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=24.2
Q ss_pred EEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 174 IACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 174 Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
.++.|++-.+.+.+++ +.+.+.+|+..+++-.
T Consensus 21 e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~i~~~ 52 (71)
T PF07883_consen 21 EFFYVLSGEGTLTVDG--ERVELKPGDAIYIPPG 52 (71)
T ss_dssp EEEEEEESEEEEEETT--EEEEEETTEEEEEETT
T ss_pred EEEEEEECCEEEEEcc--EEeEccCCEEEEECCC
Confidence 6777888777777553 4789999999988744
No 19
>PRK10470 ribosome hibernation promoting factor HPF; Provisional
Probab=28.70 E-value=41 Score=24.25 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q 027653 90 LRSYLRVRLQKLEKYMFYIW 109 (220)
Q Consensus 90 l~sYlR~RL~KIe~~~~~~~ 109 (220)
+++|...|+.||++|...+.
T Consensus 16 l~~~v~~kl~kL~r~~~~i~ 35 (95)
T PRK10470 16 LREFVTAKFAKLEQYFDRIN 35 (95)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 68899999999999976554
No 20
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=27.69 E-value=1e+02 Score=30.55 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHH
Q 027653 23 TDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60 (220)
Q Consensus 23 ~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~ 60 (220)
..++.=++.|+|.|..-=|=-+...||+.+++.|.++.
T Consensus 591 ~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~ 628 (668)
T KOG2253|consen 591 ILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHS 628 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 45666678899999888899999999999999998763
No 21
>COG3022 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.88 E-value=1.3e+02 Score=26.25 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 027653 116 SRLSDPEKMFVQRCIDDMEKHLE 138 (220)
Q Consensus 116 ~~LS~~E~~f~~~y~~ll~~~~~ 138 (220)
..||+.+++|++++..++..+|+
T Consensus 92 ~~L~~~~~~~~q~hl~IlS~LYG 114 (253)
T COG3022 92 ETLSEKDQAYLQQHLRILSGLYG 114 (253)
T ss_pred hhCCHHHHHHHHhhHHHHhhhcc
Confidence 56999999999999999998887
No 22
>PRK10721 hypothetical protein; Provisional
Probab=24.33 E-value=78 Score=21.95 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=16.0
Q ss_pred ccCChHHHHHHHHHHHhhh
Q 027653 18 TLMSTTDAELLKTAWRNEK 36 (220)
Q Consensus 18 ~~~~~~~~~~L~~~w~NEk 36 (220)
.-.++..++.+..+|+.|+
T Consensus 47 ~~~~EkiLEAIQ~aWieE~ 65 (66)
T PRK10721 47 QASNEKILEAILLVWLDEA 65 (66)
T ss_pred ccccHHHHHHHHHHHHHhh
Confidence 4557899999999999884
No 23
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=22.59 E-value=3e+02 Score=21.11 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027653 96 VRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLP 146 (220)
Q Consensus 96 ~RL~KIe~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p 146 (220)
+||+-+.+|..|+...+ ...+++.|+ ...|..+|.+=|.. |+..-|
T Consensus 37 ~RLHILKrF~~yL~~~~--~~~~~e~~~--~~~yr~aL~~AY~d-F~~Stp 82 (113)
T PRK00810 37 ARLHILKRMGQYLAQED--FAGLPEAEA--RARCRAVLERAYAD-FVASSP 82 (113)
T ss_pred hHHHHHHHHHHHHHhcc--cCCCCHHHH--HHHHHHHHHHHHHH-HccCCH
Confidence 58888999999888533 245777665 55677777776554 555555
No 24
>PF08375 Rpn3_C: Proteasome regulatory subunit C-terminal; InterPro: IPR013586 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome is a self-compartmentalising protease responsible for the regulated degradation of intracellular proteins in eukaryotes [, ]. This giant intracellular protease is formed by several subunits arranged into two 19S polar caps, where protein recognition and ATP-dependent unfolding occur, flanking a 20S central barrel-shaped structure with an inner proteolytic chamber. This overall structure is highly conserved among eukaryotes and is essential for cell viability. Proteins targeted to the 26S proteasome are conjugated with a polyubiquitin chain by an enzymatic cascade before delivery to the 26S proteasome for degradation into oligopeptides. The 19S component is divided into a "base" subunit containing six ATPases (Rpt proteins) and two non-ATPases (Rpn1, Rpn2), and a "lid" subunit composed of eight stoichiometric proteins (Rpn3, Rpn5, Rpn6, Rpn7, Rpn8, Rpn9, Rpn11, Rpn12) []. Additional non-essential and species specific proteins may also be present. The 19S unit performs several essential functions including binding the specific protein substrates, unfolding them, cleaving the attached ubiquitin chains, opening the 20S subunit, and driving the unfolded polypeptide into the proteolytic chamber for degradation. The 26s proteasome and 19S regulator are of medical interest due to their involvement in burn rehabilitation []. This eukaryotic domain is found at the C terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function []. It occurs together with the PCI/PINT domain (IPR000717 from INTERPRO). ; GO: 0030234 enzyme regulator activity, 0042176 regulation of protein catabolic process, 0000502 proteasome complex
Probab=22.26 E-value=63 Score=22.48 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=8.5
Q ss_pred HHHHHHHHHH
Q 027653 84 DRAHFLLRSY 93 (220)
Q Consensus 84 eRik~ll~sY 93 (220)
+||+|||.-|
T Consensus 14 ~RI~FCL~lH 23 (68)
T PF08375_consen 14 QRIAFCLQLH 23 (68)
T ss_pred HHHHHHHHHH
Confidence 5999999866
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.98 E-value=8.3e+02 Score=24.66 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.0
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 027653 116 SRLSDPEKMFVQRCIDDMEK 135 (220)
Q Consensus 116 ~~LS~~E~~f~~~y~~ll~~ 135 (220)
..||.+|++|+++...+-.+
T Consensus 628 P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 628 PVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45999999998876655443
No 26
>cd08337 DED_c-FLIP_repeat1 Death Effector Domain, repeat 1, of cellular FLICE-Inhibitory Protein. Death Effector Domain (DED), repeat 1, similar to that found in FLICE-inhibitory protein (c-FLIP/CASH, also known as Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of the Death Inducing Signalling Complex (DISC). At low levels, c-FLIP has been shown to enhance apoptotic signaling by allosterically activating caspase-8. As a modulator of the initiator caspases, c-FLIP regulates life and death in various types of cells and tissues. All members contain two N-terminal DEDs and a C-terminal pseudo-caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association
Probab=21.53 E-value=1.9e+02 Score=20.70 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhHHHhhcccccccCCC---HHHHHHHHHHHHHHHHHHHH
Q 027653 79 YQMDLDRAHFLLRSYL-RVRLQKLEKYMFYIWKNESLWSRLS---DPEKMFVQRCIDDMEKHLEE 139 (220)
Q Consensus 79 ~~~eleRik~ll~sYl-R~RL~KIe~~~~~~~~~~e~~~~LS---~~E~~f~~~y~~ll~~~~~~ 139 (220)
-.-|++..+|+++.|. +.++.+|+... ..+.+ +..|+ -.|.-|.=+=..++.++++.
T Consensus 14 ds~E~e~L~FLC~D~ip~~~~e~~~~l~-~~L~e---~~~L~~~~L~ELLy~i~R~DLL~~~l~~ 74 (80)
T cd08337 14 DTDEDELLLFLCRDAAPDCTTAQLRDLL-RALNE---RGKLTLAALAELLYRVKRFDLLKRILHL 74 (80)
T ss_pred ChHHHHHHHHHcccccccccchhHHHHH-HHHHH---cCCCCHHHHHHHHHHHhHHHHHHHHHCc
Confidence 3468899999999999 66677777432 22322 34577 57888888888888777664
No 27
>cd00552 RaiA RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).
Probab=20.88 E-value=91 Score=21.95 Aligned_cols=16 Identities=56% Similarity=1.016 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhH
Q 027653 90 LRSYLRVRLQKLEKYM 105 (220)
Q Consensus 90 l~sYlR~RL~KIe~~~ 105 (220)
++.|++.|+.||.+|.
T Consensus 15 l~~~i~~k~~kl~r~~ 30 (93)
T cd00552 15 LREYVEEKLEKLEKYF 30 (93)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788888888888875
No 28
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=20.28 E-value=1.8e+02 Score=22.80 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHhhcccccccCCCHHHHHHHHHHHHHH
Q 027653 96 VRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDM 133 (220)
Q Consensus 96 ~RL~KIe~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll 133 (220)
+||++ |.|.+--+... +.+.+.+|..++++|..-+
T Consensus 95 ~rleR-EE~VyneImkn--k~~F~~aEI~~a~~YI~~l 129 (132)
T PF15640_consen 95 SRLER-EEYVYNEIMKN--KYKFNEAEIDHAQKYIYKL 129 (132)
T ss_pred hhhhH-HHHHHHHHHhc--hhhCcHHHHHHHHHHHHHH
Confidence 34555 56655444322 2578999999999998765
Done!