Query 027653
Match_columns 220
No_of_seqs 105 out of 351
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 22:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e9x_D GINS complex subunit 4; 100.0 2.5E-58 8.7E-63 391.0 16.8 196 15-220 17-223 (223)
2 2q9q_C DNA replication complex 100.0 9.6E-46 3.3E-50 308.2 16.2 184 19-220 1-194 (196)
3 2e9x_A DNA replication complex 100.0 1.1E-29 3.9E-34 202.7 16.2 119 19-139 1-127 (149)
4 3anw_A GINS51, putative unchar 98.7 1.4E-06 4.9E-11 71.3 16.2 177 25-219 3-183 (188)
5 3anw_B GINS23, putative unchar 97.5 0.0008 2.7E-08 54.1 9.8 115 22-138 55-169 (171)
6 3es4_A Uncharacterized protein 56.4 9.2 0.00031 28.3 3.3 32 174-206 63-94 (116)
7 1m1e_B ICAT; cell adhesion, cy 52.1 38 0.0013 23.4 5.6 25 114-138 29-53 (81)
8 3bcw_A Uncharacterized protein 46.7 15 0.0005 27.0 3.1 34 173-207 69-102 (123)
9 2arc_A ARAC, arabinose operon 42.5 22 0.00076 26.0 3.6 36 170-207 36-71 (164)
10 1d7m_A Cortexillin I; coiled-c 40.7 39 0.0013 23.9 4.3 75 23-104 4-82 (101)
11 1o5u_A Novel thermotoga mariti 34.8 30 0.001 24.3 3.1 35 172-207 49-83 (101)
12 2e9x_B DNA replication complex 28.3 2.2E+02 0.0074 22.4 8.2 94 25-138 68-168 (185)
13 2opk_A Hypothetical protein; p 27.3 68 0.0023 22.5 4.0 37 171-207 52-88 (112)
14 3mlq_A DNA-directed RNA polyme 27.2 56 0.0019 26.0 3.8 54 89-143 132-185 (188)
15 1q2h_A APS, adaptor protein wi 27.1 92 0.0032 20.8 4.2 38 103-142 25-62 (69)
16 1uj8_A ORF3, hypothetical prot 24.9 51 0.0017 22.5 2.6 20 17-36 57-76 (77)
17 3v26_X ORF3, ORF95, probable s 24.1 36 0.0012 24.1 1.9 19 90-108 16-34 (101)
18 2q30_A Uncharacterized protein 23.4 60 0.0021 21.8 3.0 32 175-207 58-89 (110)
19 4i4a_A Similar to unknown prot 22.5 75 0.0026 22.2 3.4 35 171-207 53-87 (128)
20 4fyl_A Ribosome hibernation pr 22.4 33 0.0011 23.9 1.3 18 90-107 16-33 (95)
21 2i45_A Hypothetical protein; n 22.1 72 0.0025 21.6 3.2 34 173-207 49-82 (107)
22 2gu9_A Tetracenomycin polyketi 21.8 82 0.0028 21.1 3.4 34 172-207 44-77 (113)
23 1v70_A Probable antibiotics sy 21.7 73 0.0025 20.9 3.1 32 174-207 51-82 (105)
24 1yhf_A Hypothetical protein SP 21.6 82 0.0028 21.4 3.4 34 172-207 60-93 (115)
25 2ozj_A Cupin 2, conserved barr 21.1 88 0.003 21.4 3.5 33 172-206 58-90 (114)
26 3lwc_A Uncharacterized protein 20.9 58 0.002 23.3 2.5 32 174-207 61-92 (119)
27 4h7l_A Uncharacterized protein 20.8 65 0.0022 24.9 2.9 32 174-207 68-101 (157)
28 1imu_A Hypothetical protein HI 20.7 43 0.0015 23.8 1.7 20 90-109 16-35 (107)
29 3h8u_A Uncharacterized conserv 20.0 92 0.0032 21.6 3.5 34 173-207 61-94 (125)
No 1
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A*
Probab=100.00 E-value=2.5e-58 Score=391.02 Aligned_cols=196 Identities=30% Similarity=0.498 Sum_probs=174.8
Q ss_pred chhccCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 027653 15 DYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYL 94 (220)
Q Consensus 15 ~~~~~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYl 94 (220)
+.+.+++.+++++|+++|+||++||+||||++++|++++++|+.|+++++.+.. +++.+.+||+|++|+||||+|||
T Consensus 17 ~~~~~t~~~~~~~L~~~w~nE~~aPeLlpy~~~lv~~v~~~i~~~~e~i~~~~~---~~~~l~i~~~eleR~k~~l~sYl 93 (223)
T 2e9x_D 17 EEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKR---EDLKVSIHQMEMERIRYVLSSYL 93 (223)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCSSCCCCCHHHHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHcccCCCcccCcchHHHHHHHHHHHHHHHHHHHhhc---ccHhHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999998887754 47899999999999999999999
Q ss_pred HHHHHHHHHhHHHhhccccc----c-cCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCC
Q 027653 95 RVRLQKLEKYMFYIWKNESL----W-SRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQ 169 (220)
Q Consensus 95 R~RL~KIe~~~~~~~~~~e~----~-~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~ 169 (220)
|+||.||++|+||++.+++. . ++||++|++|+++|+.++++||.+++|++||++++.+ +...|+++||
T Consensus 94 R~RL~KIe~~~~~~~~~~~~r~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~P~~~~~l-------d~~~m~~~P~ 166 (223)
T 2e9x_D 94 RCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKV-------DLFRAVPKPD 166 (223)
T ss_dssp HHHHHHHHHTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGCCC-------CHHHHSCCCC
T ss_pred HHHHHHHHHHHHHhCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHhhhhhhCCHhhhcc-------CccccccCCC
Confidence 99999999999999986554 2 8899999999999999999999999999999999987 4557899999
Q ss_pred CCceEEEEEcccCCceecCCCC-----cceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653 170 LDTFIACKARNRFVSLRLADSE-----RPLEMERHDVSFVLYKVIEDKIGA-DIDLV 220 (220)
Q Consensus 170 ~d~~Vfvrvl~d~g~v~l~~g~-----~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI 220 (220)
+|.||||||++|+|.|.+++++ ++|+|.||++|++||++|++||.+ .|+||
T Consensus 167 ~d~~VfvRvl~d~g~v~~~~~~g~~~~~~i~L~kgs~~~vry~~ve~LI~~G~velI 223 (223)
T 2e9x_D 167 LDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223 (223)
T ss_dssp TTCEEEEEESSCEEEEEECCSSCGGGCEEEEECTTCEEEEEHHHHHHHHHHTSEEEC
T ss_pred CCCeEEEEEeeccCeEEeCCCCCCccceeEEEccCCEEEEEHHHHHHHHHcCCEEeC
Confidence 9999999999999999998742 269999999999999999999999 99987
No 2
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=100.00 E-value=9.6e-46 Score=308.19 Aligned_cols=184 Identities=12% Similarity=0.150 Sum_probs=112.0
Q ss_pred cCChHHHHHHHHHHHhhhcCC-CcCCCChHHHHHHHHHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHHHHH
Q 027653 19 LMSTTDAELLKTAWRNEKAAP-EILQFQAPLVKRAKEQIQLMEETVEEYEES------GMDPLTVSLYQMDLDRAHFLLR 91 (220)
Q Consensus 19 ~~~~~~~~~L~~~w~NEk~aP-eLLpy~~~lV~~v~~~I~~q~e~l~~~~~~------~~~~~~~~l~~~eleRik~ll~ 91 (220)
|.++...+.++.+|+ ++| +||||++++|++++++|+.|++++....+. +.+.+.+.++|++++||||||+
T Consensus 1 m~g~~a~~Ll~el~r---~~~~~L~py~~dlv~~v~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~R~Kr~l~ 77 (196)
T 2q9q_C 1 MFCEKAMELIRELHR---APEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTV 77 (196)
T ss_dssp CTTHHHHHHHHHHHT---SCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHh---cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999996 455 999999999999999999999887655422 1234779999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhc--ccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCC
Q 027653 92 SYLRVRLQKLEKYMFYIWK--NESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQ 169 (220)
Q Consensus 92 sYlR~RL~KIe~~~~~~~~--~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~ 169 (220)
||||+|+.||++|+|+++. +++.+++|||+|++|+++|+.++.+|+.+.+.+ + .+ +. .+.++||
T Consensus 78 aYlr~Rl~KI~~~~w~~~~~l~~~~~~~LS~~E~~y~~~y~~ll~~y~~~~~~~-----~-~l-------dl-t~~~~Pp 143 (196)
T 2q9q_C 78 AYLYDRLLRIRALRWEYGSILPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGD-----E-GL-------DI-TQDMKPP 143 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSSS-----S-CC-------CT-TSCCSCC
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhcccc-----c-Cc-------Cc-cCCCCCC
Confidence 9999999999999999985 366789999999999999999999998875311 1 12 11 1235899
Q ss_pred CCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653 170 LDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDLV 220 (220)
Q Consensus 170 ~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI 220 (220)
+|.||||||++|+|+|.+++|+ +|+|.||++|++||++|++||.+ .|+||
T Consensus 144 ~d~~V~VRvl~d~gev~~~~g~-~v~L~kgs~~~lr~~~ve~LI~~G~leli 194 (196)
T 2q9q_C 144 KSLYIEVRCLKDYGEFEVDDGT-SVLLKKNSQHFLPRWKCEQLIRQGVLEHI 194 (196)
T ss_dssp CC--------------------------------------------------
T ss_pred CCCeEEEEEecccCeEEecCCC-EEEEeeCCEEEEEHHHHHHHHHCCceecc
Confidence 9999999999999999998875 69999999999999999999999 99886
No 3
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=99.97 E-value=1.1e-29 Score=202.74 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcC---C---CchhHHHHHHHHHHHHHHHHH
Q 027653 19 LMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESG---M---DPLTVSLYQMDLDRAHFLLRS 92 (220)
Q Consensus 19 ~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~---~---~~~~~~l~~~eleRik~ll~s 92 (220)
|.++..++.++.+|.++ +|+||||++++|++|+++|+.+++++....+.. . ..+.+.+||++++||||||+|
T Consensus 1 m~g~~a~~Ll~el~rs~--~~~Lppy~~dlVr~v~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~RnKrcLlA 78 (149)
T 2e9x_A 1 MFCEKAMELIRELHRAP--EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVA 78 (149)
T ss_dssp CTTHHHHHHHHHHHHSC--TTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999988 899999999999999999999999887754321 1 236688999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhcc--cccccCCCHHHHHHHHHHHHHHHHHHHH
Q 027653 93 YLRVRLQKLEKYMFYIWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEE 139 (220)
Q Consensus 93 YlR~RL~KIe~~~~~~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~ 139 (220)
|||+|++||++++|+++.. ++.+++|||+|.+|+++|+.++.+|+.+
T Consensus 79 Yl~~Rl~kI~~~~w~~g~~L~~~~~~~LS~~E~~f~~~Y~~lL~~y~~~ 127 (149)
T 2e9x_A 79 YLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRS 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCChHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864 5567899999999999999999999885
No 4
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=98.65 E-value=1.4e-06 Score=71.34 Aligned_cols=177 Identities=12% Similarity=0.133 Sum_probs=125.2
Q ss_pred HHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653 25 AELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEE-SGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEK 103 (220)
Q Consensus 25 ~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~-~~~~~~~~~l~~~eleRik~ll~sYlR~RL~KIe~ 103 (220)
++.|...|.+|+.++.|.+-..+.-+.+.+-|..+...+..... . .++...++..++++.+..+.+-.+.|+.||=+
T Consensus 3 i~eL~~il~~Er~s~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~--~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~ 80 (188)
T 3anw_A 3 IVKLRELLEAELSSTDLNELDEDFYVEFDSLIKALKLSAESSRERG--EDVEERLYLAQLKIAESLMKEIIKLRLHKIVD 80 (188)
T ss_dssp HHHHHHHHHHHHTCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998899988888776654 2 24567778889999999999999999999999
Q ss_pred hHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhh-hcccccCCCCCCCCCCCceEEEEEcccC
Q 027653 104 YMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRR-QSVISEEDDMVPEPQLDTFIACKARNRF 182 (220)
Q Consensus 104 ~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~-~~~~~~~~~mi~~P~~d~~Vfvrvl~d~ 182 (220)
.+. . +..++|+++|+.++......+..+-.. +|.+ .... ....++....-+.+..+.|| +++|.
T Consensus 81 ~a~--~---~~~~~Lt~EEk~l~~~l~~~i~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~---v~~d~ 145 (188)
T 3anw_A 81 LAV--E---GKIAEMTAEEKRLFNVIRAFIEREELP-----EISE--EVQPQEESEAEAEYRSKEVPKEAYI---IQIDL 145 (188)
T ss_dssp HHH--H---TEECCCCHHHHHHHHHHHHHHTTCCCC-----CC-----------------CCCCCCCEEEEE---ECSCB
T ss_pred HHh--h---hhhhhCCHHHHHHHHHHHHHHHhcccc-----cccc--ccccccccccccccccccCcCcceE---EEeCC
Confidence 882 1 134789999999999887766543222 2210 0000 00000000000112223344 38999
Q ss_pred CceecCCCCccee-eecCCEEEEEhhhHHHHHhh-cccc
Q 027653 183 VSLRLADSERPLE-MERHDVSFVLYKVIEDKIGA-DIDL 219 (220)
Q Consensus 183 g~v~l~~g~~~v~-L~kg~i~~l~y~~v~~Li~~-~v~L 219 (220)
+.|.-.+|- ... |.+||+-.+|......|+.. .++-
T Consensus 146 p~i~~~d~r-~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~ 183 (188)
T 3anw_A 146 PAVLGPDMK-EYGPFMAGDMAIIPTVIGRALVEREAARR 183 (188)
T ss_dssp CCEECTTSC-EECCBCTTCEEEEEHHHHHHHHTTTSEEE
T ss_pred CceecCCcC-cccCCCcccEEeecHHHHHHHHhCCCeEE
Confidence 988854443 567 99999999999999999998 6653
No 5
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=97.47 E-value=0.0008 Score=54.08 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653 22 TTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKL 101 (220)
Q Consensus 22 ~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~KI 101 (220)
...++.|.+.-.-||.++.|-+=+.+.=.++..-|..+++.+....+...+.+...+ .++.+.+-.++.-.+.|+.||
T Consensus 55 ~~~I~eL~~il~eEr~~~~L~~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl--~elk~~~~~l~~L~~~Ri~KI 132 (171)
T 3anw_B 55 DKIIGEIDKVIAEERESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKL--TKLANLRKKLRDLKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCCCTTHHHHHHHHHHHHHHHTTCCC-------CCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888999988988888888888888888888765433221111222223 779999999999999999999
Q ss_pred HHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHH
Q 027653 102 EKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE 138 (220)
Q Consensus 102 e~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~ 138 (220)
=+.+.+-.+..+..++|||+|+..+..-...+..++.
T Consensus 133 v~la~~~~~~~eil~rLTpEEk~iy~~l~~~i~~w~g 169 (171)
T 3anw_B 133 LKAVMLRPNSLELLSRLAPEERRIYLQMSKIRNEWLG 169 (171)
T ss_dssp HHHHTC--CCHHHHTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCcHHHHhcCCHHHHHHHHHHHHHHHHHcc
Confidence 9999655555566789999999999999888877643
No 6
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=56.42 E-value=9.2 Score=28.27 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=24.6
Q ss_pred EEEEEcccCCceecCCCCcceeeecCCEEEEEh
Q 027653 174 IACKARNRFVSLRLADSERPLEMERHDVSFVLY 206 (220)
Q Consensus 174 Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y 206 (220)
=||.+++-...+..++|+ .+++.+|+.+++|-
T Consensus 63 E~~~iLeG~~~lt~ddG~-~~~l~aGD~~~~P~ 94 (116)
T 3es4_A 63 ETFVVVEGEALYSQADAD-PVKIGPGSIVSIAK 94 (116)
T ss_dssp EEEEEEECCEEEEETTCC-CEEECTTEEEEECT
T ss_pred EEEEEEEeEEEEEeCCCe-EEEECCCCEEEECC
Confidence 477788866666666665 79999999999873
No 7
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=52.11 E-value=38 Score=23.43 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHH
Q 027653 114 LWSRLSDPEKMFVQRCIDDMEKHLE 138 (220)
Q Consensus 114 ~~~~LS~~E~~f~~~y~~ll~~~~~ 138 (220)
+-+.|||+|..|+..|......-|.
T Consensus 29 LGe~Ls~eE~~FL~~~~~~~ls~Fe 53 (81)
T 1m1e_B 29 MGSNLTASEEEFLRTYAGVVNSQLS 53 (81)
T ss_dssp TTCCCCHHHHHHHHHTHHHHHHHHT
T ss_pred hcccCCHHHHHHHHHHhhhHHHHHH
Confidence 3468999999999999887644443
No 8
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=46.69 E-value=15 Score=27.05 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=23.8
Q ss_pred eEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 173 FIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 173 ~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
-=||.|++..+.+.+++| +.+.|.+|+.+++|-.
T Consensus 69 ~E~~~Vl~G~~~l~~~~g-~~~~l~~GD~~~ip~g 102 (123)
T 3bcw_A 69 IEYCHIIEGEARLVDPDG-TVHAVKAGDAFIMPEG 102 (123)
T ss_dssp EEEEEEEEEEEEEECTTC-CEEEEETTCEEEECTT
T ss_pred cEEEEEEEEEEEEEECCC-eEEEECCCCEEEECCC
Confidence 345557775555666445 4799999999998743
No 9
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=42.52 E-value=22 Score=25.96 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=28.3
Q ss_pred CCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 170 LDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 170 ~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
.+.|.++-|.+..|.+.+++ ....+.+|++++++-.
T Consensus 36 h~~~~i~~v~~G~~~~~i~~--~~~~l~~Gd~~~i~p~ 71 (164)
T 2arc_A 36 MKGYILNLTIRGQGVVKNQG--REFVCRPGDILLFPPG 71 (164)
T ss_dssp CSSEEEEEEEEECEEEEETT--EEEEECTTCEEEECTT
T ss_pred CCceEEEEEEEeEEEEEECC--EEEEecCCeEEEEcCC
Confidence 56788999999888888865 3678888888887643
No 10
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=40.72 E-value=39 Score=23.89 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHH----HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027653 23 TDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETV----EEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRL 98 (220)
Q Consensus 23 ~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l----~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL 98 (220)
+-+.-|.++.-+||.|.|.|.-+-+=....+..+..+.+.. ..+.+ .+.-.+..++.+|.-++ =+-.||
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~a----kidd~Lk~l~~EklAkl---dLE~RL 76 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEA----KLDETLKNLELEKLARM---ELEARL 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcccHHHHHHH---HHHHHH
Confidence 44667888899999998877776666666666666665432 22322 24445677787776544 567788
Q ss_pred HHHHHh
Q 027653 99 QKLEKY 104 (220)
Q Consensus 99 ~KIe~~ 104 (220)
.|-|+-
T Consensus 77 sKtEKD 82 (101)
T 1d7m_A 77 AKTEKD 82 (101)
T ss_dssp HHHHHH
T ss_pred hhhhhH
Confidence 887774
No 11
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=34.81 E-value=30 Score=24.28 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=25.0
Q ss_pred ceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 172 TFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 172 ~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
..-++.|++..+.+.+++| +...|.+|+..+++-.
T Consensus 49 ~~E~~~Vl~G~~~~~i~~g-~~~~l~~GD~i~ip~g 83 (101)
T 1o5u_A 49 TNETCYILEGKVEVTTEDG-KKYVIEKGDLVTFPKG 83 (101)
T ss_dssp SCEEEEEEEEEEEEEETTC-CEEEEETTCEEEECTT
T ss_pred ceEEEEEEeCEEEEEECCC-CEEEECCCCEEEECCC
Confidence 3445667887777777634 4789999999988743
No 12
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=28.35 E-value=2.2e+02 Score=22.42 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhcCCCc--CCCC--hHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653 25 AELLKTAWRNEKAAPEI--LQFQ--APLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQK 100 (220)
Q Consensus 25 ~~~L~~~w~NEk~aPeL--Lpy~--~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~K 100 (220)
++.|++..-.|+..+.+ |||+ -++...+++. .. |++. ..+.++.++..-...|+.|
T Consensus 68 ~e~L~~~~~~E~~~~~f~~lP~~~~~Eia~lLl~~----------a~----dDi~------~~~~ir~Li~DI~~vR~~K 127 (185)
T 2e9x_B 68 VEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNH----------AS----DNIP------KADEIRTLVKDMWDTRIAK 127 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCCCSSTTHHHHHHHHHHH----------HG----GGST------THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh----------cc----cccc------CHHHHHHHHHHHHHHHHHH
Confidence 56666666667776654 6664 4444444422 11 2332 2468999999999999999
Q ss_pred HHHhHHHhhcc--ccc-ccCCCHHHHHHHHHHHHHHHHHHH
Q 027653 101 LEKYMFYIWKN--ESL-WSRLSDPEKMFVQRCIDDMEKHLE 138 (220)
Q Consensus 101 Ie~~~~~~~~~--~e~-~~~LS~~E~~f~~~y~~ll~~~~~ 138 (220)
|.+-...+... ..+ -.+||.-|....+.+..-.-+.+.
T Consensus 128 ir~~l~~l~~~~~~~~~l~nls~mEin~iR~f~~~~~~~l~ 168 (185)
T 2e9x_B 128 LRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMY 168 (185)
T ss_dssp HHHHHHHHHHTTCSEEECTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEeCCccHHHHHHhHHHHHHHHHHHH
Confidence 99987766532 111 268999999999998655545444
No 13
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=27.30 E-value=68 Score=22.46 Aligned_cols=37 Identities=11% Similarity=-0.090 Sum_probs=27.2
Q ss_pred CceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 171 DTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 171 d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
+.+-++-|++..+.+.++++...+.|.+|+..++|-.
T Consensus 52 ~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ipa~ 88 (112)
T 2opk_A 52 PQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPAH 88 (112)
T ss_dssp SSEEEEEEEESCEEEEETTCSSCEEECTTEEEEECTT
T ss_pred CccEEEEEEeCeEEEEECCEEEEEEECCCCEEEECCC
Confidence 4667777888878788865321189999999998743
No 14
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=27.20 E-value=56 Score=26.05 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 027653 89 LLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLS 143 (220)
Q Consensus 89 ll~sYlR~RL~KIe~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~ 143 (220)
+|..=+|+.|.||||+...-++..+. ..|+|.-..-.+-+...+.++|.++=|.
T Consensus 132 ll~~q~r~gl~r~ek~~~e~~~~~~~-~~~~~~~l~n~kp~~~~ik~ff~ss~Ls 185 (188)
T 3mlq_A 132 LMADQFRVGLARLARGVRERMVMGSP-DTLTPAKLVNSRPLEAALREFFSRSQLS 185 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCG-GGCCHHHHCCCHHHHHHHHHHHHTCEEC
T ss_pred eeEEehhhHHHHHHHHHHhhhccccc-cccCcccchhhHHHHHHHHHhhcccccc
Confidence 55666788888999887655554443 6799999999999999999999987554
No 15
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=27.10 E-value=92 Score=20.80 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.9
Q ss_pred HhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 027653 103 KYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVL 142 (220)
Q Consensus 103 ~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L 142 (220)
+|..|+-.+|+.. -.-.++.|..+|..+...||.+-+-
T Consensus 25 ~~~~f~~~nP~~~--~~~s~~~Fs~~F~~~F~~hF~~E~~ 62 (69)
T 1q2h_A 25 KFCRFLRDNPAYD--TPDAGASFSRHFAANFLDVFGEEVR 62 (69)
T ss_dssp HHHHHHHHCGGGC--STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccc--CcccHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777653 3556799999999999999998653
No 16
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=24.94 E-value=51 Score=22.53 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=16.4
Q ss_pred hccCChHHHHHHHHHHHhhh
Q 027653 17 ETLMSTTDAELLKTAWRNEK 36 (220)
Q Consensus 17 ~~~~~~~~~~~L~~~w~NEk 36 (220)
..-.++..++.+..+|+.|.
T Consensus 57 p~~~nEkiLEAIQ~aWidE~ 76 (77)
T 1uj8_A 57 PQASNEKILEAILLVWLDEA 76 (77)
T ss_dssp GGGCCHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHhh
Confidence 34567899999999999774
No 17
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=24.05 E-value=36 Score=24.07 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q 027653 90 LRSYLRVRLQKLEKYMFYI 108 (220)
Q Consensus 90 l~sYlR~RL~KIe~~~~~~ 108 (220)
|++|...+|.|+++|...+
T Consensus 16 lr~~ve~Kl~kL~k~~d~i 34 (101)
T 3v26_X 16 LREFVTAKFAKLEQYFDRI 34 (101)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 6789999999999886443
No 18
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=23.39 E-value=60 Score=21.81 Aligned_cols=32 Identities=6% Similarity=-0.165 Sum_probs=22.9
Q ss_pred EEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 175 ACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 175 fvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
++.|++..+.+.+++| ....+.+|+..+++-.
T Consensus 58 ~~~vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~~ 89 (110)
T 2q30_A 58 NIVVLEGEGEFVGDGD-AVIPAPRGAVLVAPIS 89 (110)
T ss_dssp EEEEEESCEEEECGGG-CEEEECTTEEEEEETT
T ss_pred EEEEEeCEEEEEeCCC-EEEEECCCCEEEeCCC
Confidence 3567887777777533 3688999999988754
No 19
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=22.46 E-value=75 Score=22.19 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=25.3
Q ss_pred CceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 171 DTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 171 d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
+.+-++.|++..|.+.+++ ....+.+|++.+++-.
T Consensus 53 ~~~Ei~~v~~G~~~~~i~~--~~~~l~~Gd~~~i~~~ 87 (128)
T 4i4a_A 53 NEYELFIVIQGNAIIRIND--EDFPVTKGDLIIIPLD 87 (128)
T ss_dssp SSEEEEEEEESEEEEEETT--EEEEEETTCEEEECTT
T ss_pred CCeEEEEEEeCEEEEEECC--EEEEECCCcEEEECCC
Confidence 4566667777777777754 4688999998888754
No 20
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=22.41 E-value=33 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 027653 90 LRSYLRVRLQKLEKYMFY 107 (220)
Q Consensus 90 l~sYlR~RL~KIe~~~~~ 107 (220)
|++|...+|.||++|...
T Consensus 16 l~~~v~~Kl~kl~k~~~~ 33 (95)
T 4fyl_A 16 MQDYVHSKFDKLERFFDH 33 (95)
T ss_dssp HHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 678999999999888543
No 21
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=22.11 E-value=72 Score=21.63 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=23.9
Q ss_pred eEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 173 FIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 173 ~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
.-++.|++..+.+.+++++ ...+.+|+..+++-.
T Consensus 49 ~E~~~Vl~G~~~~~~~~~~-~~~l~~Gd~~~ip~~ 82 (107)
T 2i45_A 49 DKVLFAVEGDMAVDFADGG-SMTIREGEMAVVPKS 82 (107)
T ss_dssp CEEEEESSSCEEEEETTSC-EEEECTTEEEEECTT
T ss_pred CEEEEEEeCEEEEEECCCc-EEEECCCCEEEECCC
Confidence 4555678776667776523 688999999888743
No 22
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=21.76 E-value=82 Score=21.10 Aligned_cols=34 Identities=0% Similarity=-0.243 Sum_probs=25.2
Q ss_pred ceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 172 TFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 172 ~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
.+-++.|++..+.+.+++ ....+.+|+..+++-.
T Consensus 44 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~i~~~ 77 (113)
T 2gu9_A 44 ADQWLFVVDGAGEAIVDG--HTQALQAGSLIAIERG 77 (113)
T ss_dssp CEEEEEEEECCEEEEETT--EEEEECTTEEEEECTT
T ss_pred CcEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCC
Confidence 466777888777777754 4688999998887644
No 23
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=21.68 E-value=73 Score=20.86 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=22.7
Q ss_pred EEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 174 IACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 174 Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
-++.|++..+.+.+++ +...+.+|+..+++-.
T Consensus 51 e~~~v~~G~~~~~~~~--~~~~l~~Gd~~~ip~~ 82 (105)
T 1v70_A 51 KVYYALEGEVVVRVGE--EEALLAPGMAAFAPAG 82 (105)
T ss_dssp EEEEEEESCEEEEETT--EEEEECTTCEEEECTT
T ss_pred EEEEEEeCEEEEEECC--EEEEeCCCCEEEECCC
Confidence 3556777777777754 4688899998887643
No 24
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=21.63 E-value=82 Score=21.44 Aligned_cols=34 Identities=0% Similarity=-0.047 Sum_probs=24.1
Q ss_pred ceEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 172 TFIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 172 ~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
.+-++.|++..+.+.+++ ....+.+|+..+++-.
T Consensus 60 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~~ 93 (115)
T 1yhf_A 60 GDAMVTILSGLAEITIDQ--ETYRVAEGQTIVMPAG 93 (115)
T ss_dssp SEEEEEEEESEEEEEETT--EEEEEETTCEEEECTT
T ss_pred CcEEEEEEeCEEEEEECC--EEEEECCCCEEEECCC
Confidence 456666777767676654 4688999998887643
No 25
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=21.09 E-value=88 Score=21.39 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=23.8
Q ss_pred ceEEEEEcccCCceecCCCCcceeeecCCEEEEEh
Q 027653 172 TFIACKARNRFVSLRLADSERPLEMERHDVSFVLY 206 (220)
Q Consensus 172 ~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y 206 (220)
..-++.|++..+.+.+++ ....|.+|+..+++=
T Consensus 58 ~~e~~~vl~G~~~~~i~~--~~~~l~~Gd~i~i~~ 90 (114)
T 2ozj_A 58 GDTLYLILQGEAVITFDD--QKIDLVPEDVLMVPA 90 (114)
T ss_dssp SCEEEEEEEEEEEEEETT--EEEEECTTCEEEECT
T ss_pred CCeEEEEEeCEEEEEECC--EEEEecCCCEEEECC
Confidence 455666788777777754 468899999888763
No 26
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=20.91 E-value=58 Score=23.35 Aligned_cols=32 Identities=3% Similarity=-0.032 Sum_probs=21.8
Q ss_pred EEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 174 IACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 174 Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
=++.|++..+.+.++ | +.+.|.+|+..+++-.
T Consensus 61 E~~~Vl~G~~~~~~~-g-~~~~l~~GD~v~ip~g 92 (119)
T 3lwc_A 61 DVMIVLEGRLSVSTD-G-ETVTAGPGEIVYMPKG 92 (119)
T ss_dssp EEEEEEEEEEEEEET-T-EEEEECTTCEEEECTT
T ss_pred EEEEEEeCEEEEEEC-C-EEEEECCCCEEEECCC
Confidence 344467766666663 3 4788999999888754
No 27
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=20.77 E-value=65 Score=24.90 Aligned_cols=32 Identities=3% Similarity=-0.057 Sum_probs=23.6
Q ss_pred EEEEEcc--cCCceecCCCCcceeeecCCEEEEEhh
Q 027653 174 IACKARN--RFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 174 Vfvrvl~--d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
=++.|++ ..|.+.+++ +...+.+|+..+++-.
T Consensus 68 E~~yVLe~~G~g~v~idg--e~~~l~~GD~v~IPpg 101 (157)
T 4h7l_A 68 EIYVVLDHAAHATIELNG--QSYPLTKLLAISIPPL 101 (157)
T ss_dssp EEEEEEEECTTCEEEETT--EEEECCTTEEEEECTT
T ss_pred EEEEEEecCcEEEEEECC--EEEEeCCCCEEEECCC
Confidence 3556777 888888864 4688888888888754
No 28
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=20.69 E-value=43 Score=23.77 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q 027653 90 LRSYLRVRLQKLEKYMFYIW 109 (220)
Q Consensus 90 l~sYlR~RL~KIe~~~~~~~ 109 (220)
|+.|...+|.||++|...+.
T Consensus 16 lr~~v~~kl~kL~r~~~~i~ 35 (107)
T 1imu_A 16 IREHLEERLAKLGKWQTQLI 35 (107)
T ss_dssp HHHHHHHHHHHHHTSSCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 68899999999999865444
No 29
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=20.03 E-value=92 Score=21.63 Aligned_cols=34 Identities=3% Similarity=-0.095 Sum_probs=24.0
Q ss_pred eEEEEEcccCCceecCCCCcceeeecCCEEEEEhh
Q 027653 173 FIACKARNRFVSLRLADSERPLEMERHDVSFVLYK 207 (220)
Q Consensus 173 ~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~ 207 (220)
..++.|++..+.+.+.+| +...|.+|+..+++-.
T Consensus 61 ~e~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~~i~~~ 94 (125)
T 3h8u_A 61 QDTWTVISGEAEYHQGNG-IVTHLKAGDIAIAKPG 94 (125)
T ss_dssp EEEEEEEECEEEEECSTT-CEEEEETTEEEEECTT
T ss_pred eEEEEEEEeEEEEEECCC-eEEEeCCCCEEEECCC
Confidence 455567886666666344 3789999999888754
Done!