Query 027657
Match_columns 220
No_of_seqs 153 out of 1829
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 2.9E-26 6.2E-31 167.1 17.1 151 21-189 8-159 (160)
2 KOG0034 Ca2+/calmodulin-depend 99.9 5E-25 1.1E-29 165.9 19.1 186 1-198 1-187 (187)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.9 4.9E-25 1.1E-29 166.0 16.4 179 1-196 1-185 (193)
4 KOG0027 Calmodulin and related 99.9 8.2E-22 1.8E-26 145.7 16.7 143 34-186 2-149 (151)
5 PTZ00183 centrin; Provisional 99.9 1.4E-20 3E-25 139.9 18.1 148 32-189 9-157 (158)
6 PTZ00184 calmodulin; Provision 99.9 1.4E-19 2.9E-24 133.1 17.8 145 32-186 3-148 (149)
7 KOG0028 Ca2+-binding protein ( 99.8 2.8E-19 6.2E-24 127.9 15.6 145 33-187 26-171 (172)
8 KOG0038 Ca2+-binding kinase in 99.8 1.5E-19 3.3E-24 127.2 13.0 179 1-197 1-188 (189)
9 KOG0031 Myosin regulatory ligh 99.8 1.7E-18 3.7E-23 123.1 16.5 146 26-185 18-164 (171)
10 KOG0030 Myosin essential light 99.7 1E-16 2.2E-21 112.2 12.9 142 34-186 5-151 (152)
11 KOG0037 Ca2+-binding protein, 99.7 2.7E-16 5.9E-21 118.5 13.7 140 38-194 55-196 (221)
12 KOG0036 Predicted mitochondria 99.6 8.8E-14 1.9E-18 113.7 14.7 139 34-188 8-148 (463)
13 PF13499 EF-hand_7: EF-hand do 99.4 4.7E-13 1E-17 84.8 7.1 66 115-184 1-66 (66)
14 PLN02964 phosphatidylserine de 99.4 9.3E-12 2E-16 109.7 14.2 102 34-142 137-243 (644)
15 KOG0027 Calmodulin and related 99.3 1.5E-11 3.3E-16 90.8 11.2 105 77-186 8-113 (151)
16 KOG4223 Reticulocalbin, calume 99.3 1.2E-11 2.6E-16 98.7 10.0 137 36-182 159-301 (325)
17 cd05022 S-100A13 S-100A13: S-1 99.2 6.3E-11 1.4E-15 79.1 7.4 66 114-187 8-76 (89)
18 COG5126 FRQ1 Ca2+-binding prot 99.2 1.7E-10 3.7E-15 84.5 9.4 100 78-186 21-120 (160)
19 PTZ00183 centrin; Provisional 99.2 2.9E-10 6.4E-15 84.1 10.8 101 78-186 18-118 (158)
20 PTZ00184 calmodulin; Provision 99.2 4.1E-10 8.9E-15 82.4 11.3 101 78-186 12-112 (149)
21 KOG0044 Ca2+ sensor (EF-Hand s 99.2 5.8E-10 1.3E-14 84.5 11.0 115 75-197 24-139 (193)
22 KOG4223 Reticulocalbin, calume 99.2 1.1E-09 2.4E-14 87.5 13.0 145 36-189 73-231 (325)
23 KOG0037 Ca2+-binding protein, 99.1 2.2E-09 4.7E-14 81.4 13.3 128 33-185 90-219 (221)
24 KOG2562 Protein phosphatase 2 99.1 5.3E-10 1.2E-14 93.1 10.4 146 32-182 270-420 (493)
25 cd05027 S-100B S-100B: S-100B 99.1 4.6E-10 9.9E-15 74.9 8.2 69 114-186 8-79 (88)
26 KOG0377 Protein serine/threoni 99.1 1.2E-09 2.6E-14 90.5 12.0 139 39-186 463-615 (631)
27 cd05026 S-100Z S-100Z: S-100Z 99.0 3.8E-09 8.1E-14 71.4 8.3 70 114-187 10-82 (93)
28 PF13499 EF-hand_7: EF-hand do 99.0 2.4E-09 5.1E-14 67.6 6.3 60 41-102 1-65 (66)
29 cd05029 S-100A6 S-100A6: S-100 99.0 4.1E-09 9E-14 70.3 7.6 68 114-186 10-79 (88)
30 cd05031 S-100A10_like S-100A10 99.0 4.5E-09 9.7E-14 71.2 8.0 71 113-187 7-80 (94)
31 cd05025 S-100A1 S-100A1: S-100 98.9 5.8E-09 1.3E-13 70.4 8.2 72 113-188 8-82 (92)
32 cd05022 S-100A13 S-100A13: S-1 98.9 8.9E-09 1.9E-13 68.7 7.9 70 36-107 4-77 (89)
33 KOG0028 Ca2+-binding protein ( 98.9 3.6E-08 7.8E-13 71.2 10.9 101 78-186 34-134 (172)
34 smart00027 EH Eps15 homology d 98.9 1.7E-08 3.6E-13 68.7 8.7 71 33-106 3-73 (96)
35 cd00052 EH Eps15 homology doma 98.9 1.1E-08 2.3E-13 64.6 6.8 62 117-188 2-63 (67)
36 PLN02964 phosphatidylserine de 98.8 4E-08 8.6E-13 87.1 11.8 99 77-187 143-244 (644)
37 cd00213 S-100 S-100: S-100 dom 98.8 1.2E-08 2.7E-13 68.2 6.7 71 113-187 7-80 (88)
38 cd05026 S-100Z S-100Z: S-100Z 98.8 2.8E-08 6.1E-13 67.1 8.3 70 36-107 6-83 (93)
39 smart00027 EH Eps15 homology d 98.8 2.9E-08 6.4E-13 67.5 8.3 70 112-191 8-77 (96)
40 cd05027 S-100B S-100B: S-100B 98.8 4E-08 8.7E-13 65.6 8.1 70 36-107 4-81 (88)
41 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.1E-08 6.7E-13 69.4 7.7 63 112-186 46-108 (116)
42 KOG0034 Ca2+/calmodulin-depend 98.8 7E-08 1.5E-12 73.1 9.5 108 33-142 50-175 (187)
43 PF13833 EF-hand_8: EF-hand do 98.8 2.7E-08 5.9E-13 60.1 5.7 52 127-186 1-53 (54)
44 cd05023 S-100A11 S-100A11: S-1 98.8 7.6E-08 1.7E-12 64.3 8.4 71 113-187 8-81 (89)
45 cd00051 EFh EF-hand, calcium b 98.8 6.4E-08 1.4E-12 59.3 7.5 61 116-184 2-62 (63)
46 cd05029 S-100A6 S-100A6: S-100 98.7 1.7E-07 3.8E-12 62.5 8.4 69 36-106 6-80 (88)
47 PF14658 EF-hand_9: EF-hand do 98.7 1.2E-07 2.6E-12 58.8 6.7 61 118-186 2-64 (66)
48 KOG4251 Calcium binding protei 98.7 9.6E-08 2.1E-12 73.8 7.6 147 38-186 99-309 (362)
49 cd00213 S-100 S-100: S-100 dom 98.7 1.5E-07 3.3E-12 62.9 7.7 69 36-106 4-80 (88)
50 cd00052 EH Eps15 homology doma 98.6 1.9E-07 4.1E-12 58.7 7.0 60 43-105 2-61 (67)
51 cd05025 S-100A1 S-100A1: S-100 98.6 2E-07 4.4E-12 62.8 7.5 70 36-107 5-82 (92)
52 cd05023 S-100A11 S-100A11: S-1 98.6 3.1E-07 6.7E-12 61.4 8.1 70 36-107 5-82 (89)
53 cd05031 S-100A10_like S-100A10 98.6 4.1E-07 8.9E-12 61.6 8.1 68 37-106 5-80 (94)
54 KOG0040 Ca2+-binding actin-bun 98.6 1.7E-06 3.8E-11 81.0 14.2 139 33-185 2246-2397(2399)
55 KOG0036 Predicted mitochondria 98.6 1.3E-06 2.7E-11 72.3 11.6 98 76-186 13-110 (463)
56 KOG4666 Predicted phosphate ac 98.6 1E-07 2.2E-12 76.4 5.1 127 55-193 240-366 (412)
57 KOG2643 Ca2+ binding protein, 98.5 1.1E-06 2.3E-11 73.2 11.0 130 42-186 320-453 (489)
58 cd00252 SPARC_EC SPARC_EC; ext 98.5 5.3E-07 1.1E-11 63.2 7.8 58 78-140 49-106 (116)
59 cd05030 calgranulins Calgranul 98.5 4.9E-07 1.1E-11 60.4 7.1 67 114-187 8-80 (88)
60 PF00036 EF-hand_1: EF hand; 98.5 1.5E-07 3.3E-12 49.0 3.3 28 115-142 1-28 (29)
61 cd00051 EFh EF-hand, calcium b 98.5 7.8E-07 1.7E-11 54.3 7.0 59 80-139 3-61 (63)
62 KOG0751 Mitochondrial aspartat 98.5 5.3E-06 1.2E-10 70.2 13.4 148 34-186 30-207 (694)
63 PF13833 EF-hand_8: EF-hand do 98.4 1.1E-06 2.3E-11 53.0 6.4 50 91-141 2-52 (54)
64 KOG0041 Predicted Ca2+-binding 98.4 4.9E-06 1.1E-10 62.5 10.6 106 34-141 93-202 (244)
65 cd05024 S-100A10 S-100A10: A s 98.3 5.5E-06 1.2E-10 55.1 8.4 69 36-107 4-78 (91)
66 cd05030 calgranulins Calgranul 98.3 4.3E-06 9.4E-11 55.8 7.2 71 36-106 4-80 (88)
67 KOG0030 Myosin essential light 98.3 2.2E-05 4.8E-10 55.7 10.4 106 75-186 9-116 (152)
68 KOG2643 Ca2+ binding protein, 98.2 1.9E-05 4.1E-10 66.0 11.3 132 41-185 234-383 (489)
69 KOG0031 Myosin regulatory ligh 98.2 1.5E-05 3.2E-10 57.5 8.8 97 78-186 33-129 (171)
70 PRK12309 transaldolase/EF-hand 98.2 1.8E-05 3.9E-10 66.8 9.8 71 95-186 314-385 (391)
71 PF14658 EF-hand_9: EF-hand do 98.1 1.5E-05 3.2E-10 49.5 6.8 59 83-141 4-63 (66)
72 PF12763 EF-hand_4: Cytoskelet 98.1 1.1E-05 2.3E-10 55.4 6.6 68 34-105 4-71 (104)
73 PF13405 EF-hand_6: EF-hand do 98.1 3.6E-06 7.7E-11 44.6 3.3 27 115-141 1-27 (31)
74 KOG0751 Mitochondrial aspartat 98.1 4.2E-05 9E-10 64.9 10.3 122 50-181 84-239 (694)
75 PF00036 EF-hand_1: EF hand; 98.1 9.8E-06 2.1E-10 42.1 4.0 26 79-104 2-27 (29)
76 KOG0041 Predicted Ca2+-binding 98.0 2.1E-05 4.6E-10 59.2 6.8 65 114-186 99-163 (244)
77 cd05024 S-100A10 S-100A10: A s 98.0 7.4E-05 1.6E-09 49.7 8.4 69 114-187 8-77 (91)
78 KOG0038 Ca2+-binding kinase in 98.0 3.3E-05 7.1E-10 55.2 6.9 98 40-142 74-177 (189)
79 PF13202 EF-hand_5: EF hand; P 98.0 1E-05 2.2E-10 40.5 2.9 24 116-139 1-24 (25)
80 KOG0169 Phosphoinositide-speci 97.9 0.00051 1.1E-08 61.4 13.6 145 33-186 129-274 (746)
81 KOG4251 Calcium binding protei 97.8 9.9E-05 2.1E-09 57.4 7.6 135 39-182 197-341 (362)
82 KOG4065 Uncharacterized conser 97.8 0.00017 3.6E-09 49.5 7.5 72 112-183 65-142 (144)
83 KOG0046 Ca2+-binding actin-bun 97.7 0.00012 2.7E-09 62.5 7.4 73 32-107 11-87 (627)
84 PRK12309 transaldolase/EF-hand 97.7 0.00013 2.7E-09 61.8 7.0 54 76-143 333-386 (391)
85 PF13202 EF-hand_5: EF hand; P 97.6 6.6E-05 1.4E-09 37.5 2.5 24 161-184 2-25 (25)
86 KOG1029 Endocytic adaptor prot 97.5 0.0015 3.3E-08 58.5 11.0 139 34-186 10-257 (1118)
87 PF13405 EF-hand_6: EF-hand do 97.4 0.00027 5.8E-09 37.2 3.5 26 42-69 2-27 (31)
88 PF10591 SPARC_Ca_bdg: Secrete 97.4 0.00013 2.8E-09 50.9 2.8 60 76-138 53-112 (113)
89 PF10591 SPARC_Ca_bdg: Secrete 97.4 9.1E-05 2E-09 51.7 1.7 63 110-182 50-112 (113)
90 KOG0040 Ca2+-binding actin-bun 97.3 0.00046 1E-08 65.6 6.2 69 114-186 2253-2324(2399)
91 PF14788 EF-hand_10: EF hand; 97.3 0.0013 2.8E-08 38.6 5.8 45 59-103 2-47 (51)
92 PF12763 EF-hand_4: Cytoskelet 97.3 0.0012 2.7E-08 45.2 6.7 67 111-188 7-73 (104)
93 KOG0377 Protein serine/threoni 97.3 0.0012 2.7E-08 55.5 7.5 65 79-143 549-616 (631)
94 PF14788 EF-hand_10: EF hand; 97.2 0.0022 4.7E-08 37.6 5.8 50 93-143 1-50 (51)
95 KOG2562 Protein phosphatase 2 97.1 0.0032 6.9E-08 53.4 8.4 133 41-187 226-380 (493)
96 KOG4347 GTPase-activating prot 97.0 0.003 6.6E-08 55.6 7.8 112 16-136 487-612 (671)
97 PF09279 EF-hand_like: Phospho 96.9 0.0035 7.6E-08 41.1 6.0 70 115-187 1-70 (83)
98 smart00054 EFh EF-hand, calciu 96.9 0.0013 2.8E-08 32.8 2.8 26 116-141 2-27 (29)
99 KOG0046 Ca2+-binding actin-bun 96.9 0.0047 1E-07 53.2 7.4 67 114-186 19-85 (627)
100 PF09069 EF-hand_3: EF-hand; 96.6 0.017 3.6E-07 38.4 7.2 79 113-194 2-83 (90)
101 smart00054 EFh EF-hand, calciu 96.3 0.0065 1.4E-07 30.1 3.3 26 161-186 3-28 (29)
102 PLN02952 phosphoinositide phos 96.2 0.059 1.3E-06 48.2 10.5 116 90-209 13-132 (599)
103 KOG4065 Uncharacterized conser 96.1 0.044 9.6E-07 37.8 7.0 68 31-102 60-142 (144)
104 KOG0035 Ca2+-binding actin-bun 95.7 0.067 1.5E-06 49.4 8.7 103 33-138 740-848 (890)
105 KOG4578 Uncharacterized conser 95.1 0.017 3.6E-07 47.1 2.6 68 115-189 334-401 (421)
106 PF09279 EF-hand_like: Phospho 94.9 0.071 1.5E-06 34.8 4.7 62 79-141 2-68 (83)
107 KOG1707 Predicted Ras related/ 94.4 0.41 8.9E-06 42.4 9.4 157 28-191 183-348 (625)
108 PF09068 EF-hand_2: EF hand; 94.0 0.49 1.1E-05 33.7 7.8 100 17-142 25-125 (127)
109 KOG0039 Ferric reductase, NADH 93.7 0.18 3.9E-06 45.9 6.2 95 91-193 2-96 (646)
110 KOG1955 Ral-GTPase effector RA 93.6 0.23 5E-06 42.9 6.2 71 33-106 224-294 (737)
111 KOG4666 Predicted phosphate ac 93.5 0.25 5.4E-06 40.5 6.1 100 38-141 257-358 (412)
112 KOG3555 Ca2+-binding proteogly 93.0 0.21 4.6E-06 41.2 5.0 62 113-186 249-310 (434)
113 KOG1029 Endocytic adaptor prot 92.8 0.16 3.5E-06 46.2 4.4 67 36-105 191-257 (1118)
114 KOG0169 Phosphoinositide-speci 92.7 1.1 2.4E-05 40.9 9.4 67 76-143 135-201 (746)
115 KOG0998 Synaptic vesicle prote 92.6 0.15 3.2E-06 47.8 4.0 139 34-186 123-345 (847)
116 KOG0042 Glycerol-3-phosphate d 92.6 0.63 1.4E-05 41.1 7.5 83 25-109 578-661 (680)
117 KOG3555 Ca2+-binding proteogly 92.4 0.27 6E-06 40.5 4.9 102 34-142 201-310 (434)
118 KOG3866 DNA-binding protein of 92.4 0.45 9.8E-06 38.7 6.0 91 96-186 226-324 (442)
119 KOG4578 Uncharacterized conser 92.0 0.12 2.6E-06 42.3 2.4 65 79-143 335-399 (421)
120 PF05042 Caleosin: Caleosin re 91.5 2.4 5.1E-05 31.7 8.5 25 48-74 15-39 (174)
121 KOG4347 GTPase-activating prot 91.2 0.58 1.2E-05 41.8 5.9 78 94-180 535-612 (671)
122 PF05042 Caleosin: Caleosin re 90.7 1.5 3.3E-05 32.8 6.9 38 159-196 97-134 (174)
123 KOG2243 Ca2+ release channel ( 90.4 0.5 1.1E-05 45.9 5.0 58 119-185 4062-4119(5019)
124 KOG0035 Ca2+-binding actin-bun 89.4 1.2 2.5E-05 41.6 6.5 74 113-190 746-820 (890)
125 PF05517 p25-alpha: p25-alpha 89.1 2.9 6.3E-05 30.8 7.4 66 40-107 2-71 (154)
126 KOG1265 Phospholipase C [Lipid 87.8 23 0.00051 33.5 13.4 126 55-186 161-299 (1189)
127 KOG4286 Dystrophin-like protei 87.0 17 0.00037 33.6 11.9 159 18-193 405-587 (966)
128 KOG4301 Beta-dystrobrevin [Cyt 86.7 2.4 5.2E-05 35.1 6.0 104 79-189 112-218 (434)
129 PF08414 NADPH_Ox: Respiratory 84.2 5.3 0.00012 26.9 5.8 64 38-107 28-94 (100)
130 PLN02230 phosphoinositide phos 83.3 6.6 0.00014 35.5 7.8 75 111-187 26-103 (598)
131 PF08414 NADPH_Ox: Respiratory 83.3 6.5 0.00014 26.5 5.9 61 116-186 32-92 (100)
132 KOG0042 Glycerol-3-phosphate d 83.2 2.4 5.3E-05 37.6 4.9 65 114-186 593-657 (680)
133 KOG1707 Predicted Ras related/ 82.8 2.8 6.1E-05 37.3 5.2 90 34-127 309-399 (625)
134 PF04876 Tenui_NCP: Tenuivirus 82.4 8.7 0.00019 27.9 6.7 69 128-199 97-173 (175)
135 PF08726 EFhand_Ca_insen: Ca2+ 81.8 1.8 3.8E-05 27.3 2.7 28 112-140 4-31 (69)
136 PLN02228 Phosphoinositide phos 81.6 7.3 0.00016 35.0 7.4 68 110-187 20-93 (567)
137 PF09068 EF-hand_2: EF hand; 79.3 15 0.00032 26.2 7.1 92 94-185 15-124 (127)
138 PF14513 DAG_kinase_N: Diacylg 79.2 5 0.00011 29.0 4.7 37 91-127 46-82 (138)
139 KOG1955 Ral-GTPase effector RA 78.9 6.6 0.00014 34.4 6.0 62 114-185 231-292 (737)
140 KOG2243 Ca2+ release channel ( 74.7 6 0.00013 39.1 5.0 69 34-104 4039-4119(5019)
141 PLN02952 phosphoinositide phos 72.7 36 0.00078 31.0 9.2 86 55-141 13-109 (599)
142 cd07313 terB_like_2 tellurium 71.8 9.9 0.00021 25.5 4.5 51 55-105 12-65 (104)
143 PLN02223 phosphoinositide phos 68.4 33 0.00072 30.7 7.9 76 111-187 13-93 (537)
144 KOG4004 Matricellular protein 68.3 2.9 6.3E-05 32.0 1.3 55 83-140 193-248 (259)
145 KOG4004 Matricellular protein 68.1 3.2 7E-05 31.8 1.5 58 118-185 191-249 (259)
146 PF01023 S_100: S-100/ICaBP ty 67.2 20 0.00044 20.2 4.5 34 37-70 3-36 (44)
147 PLN02222 phosphoinositide phos 66.1 28 0.00061 31.5 7.1 68 112-186 23-90 (581)
148 KOG2871 Uncharacterized conser 66.0 5.5 0.00012 33.5 2.5 64 111-181 306-369 (449)
149 cd07313 terB_like_2 tellurium 65.4 20 0.00044 23.9 5.0 15 34-48 16-30 (104)
150 TIGR01848 PHA_reg_PhaR polyhyd 62.2 14 0.0003 25.4 3.5 68 121-192 10-83 (107)
151 PF14513 DAG_kinase_N: Diacylg 60.8 12 0.00027 27.0 3.3 71 4-90 4-82 (138)
152 KOG3866 DNA-binding protein of 60.7 11 0.00025 30.9 3.4 61 45-107 249-326 (442)
153 cd07316 terB_like_DjlA N-termi 59.6 50 0.0011 22.0 6.5 11 55-65 12-22 (106)
154 PF05517 p25-alpha: p25-alpha 59.4 68 0.0015 23.5 10.3 87 81-169 3-94 (154)
155 PF12174 RST: RCD1-SRO-TAF4 (R 58.7 43 0.00094 21.1 5.8 50 91-144 6-55 (70)
156 PF05920 Homeobox_KN: Homeobox 57.5 6 0.00013 21.9 1.0 30 9-45 7-36 (40)
157 cd03035 ArsC_Yffb Arsenate Red 56.4 20 0.00043 24.4 3.7 34 165-198 62-95 (105)
158 PF08976 DUF1880: Domain of un 56.3 12 0.00026 26.1 2.5 32 151-186 4-35 (118)
159 KOG1264 Phospholipase C [Lipid 54.7 94 0.002 29.5 8.3 147 33-186 136-293 (1267)
160 KOG0998 Synaptic vesicle prote 54.0 9 0.00019 36.3 2.1 72 33-107 276-347 (847)
161 PF04157 EAP30: EAP30/Vps36 fa 53.8 84 0.0018 24.5 7.3 98 55-162 110-213 (223)
162 KOG1265 Phospholipase C [Lipid 50.5 1.1E+02 0.0025 29.2 8.3 79 61-141 207-298 (1189)
163 PF00404 Dockerin_1: Dockerin 49.2 29 0.00063 16.2 2.6 16 124-139 1-16 (21)
164 PLN02228 Phosphoinositide phos 48.6 83 0.0018 28.5 7.1 11 58-68 38-48 (567)
165 PF00427 PBS_linker_poly: Phyc 48.4 56 0.0012 23.4 5.0 25 172-196 42-66 (131)
166 PF04876 Tenui_NCP: Tenuivirus 48.0 1.1E+02 0.0023 22.4 7.3 76 79-163 85-161 (175)
167 PF11116 DUF2624: Protein of u 45.1 55 0.0012 21.5 4.1 29 129-161 13-41 (85)
168 KOG4403 Cell surface glycoprot 44.6 45 0.00098 28.8 4.6 57 89-145 40-99 (575)
169 PF05099 TerB: Tellurite resis 43.2 48 0.001 23.4 4.1 93 39-136 23-118 (140)
170 PF13720 Acetyltransf_11: Udp 43.1 91 0.002 20.2 5.4 50 34-89 28-77 (83)
171 PF08672 APC2: Anaphase promot 41.8 58 0.0013 19.8 3.7 35 111-146 12-48 (60)
172 cd02977 ArsC_family Arsenate R 41.7 62 0.0013 21.7 4.3 60 129-197 34-96 (105)
173 TIGR00014 arsC arsenate reduct 40.9 69 0.0015 22.0 4.5 26 173-198 72-97 (114)
174 PRK13344 spxA transcriptional 39.7 1E+02 0.0022 21.9 5.3 62 129-197 35-96 (132)
175 PF07879 PHB_acc_N: PHB/PHA ac 39.3 40 0.00087 20.8 2.6 22 121-142 10-31 (64)
176 KOG3449 60S acidic ribosomal p 39.2 1.2E+02 0.0025 21.0 5.1 42 116-161 3-44 (112)
177 PF05099 TerB: Tellurite resis 39.0 98 0.0021 21.7 5.2 85 91-182 37-122 (140)
178 PF09851 SHOCT: Short C-termin 38.6 59 0.0013 16.7 3.2 24 37-68 3-26 (31)
179 KOG0506 Glutaminase (contains 36.6 1.4E+02 0.003 26.5 6.3 71 117-192 89-164 (622)
180 cd03034 ArsC_ArsC Arsenate Red 36.5 96 0.0021 21.2 4.6 60 129-198 34-96 (112)
181 KOG2557 Uncharacterized conser 36.5 2.7E+02 0.0059 23.8 11.1 55 91-146 72-126 (427)
182 PTZ00373 60S Acidic ribosomal 35.0 1.3E+02 0.0029 20.8 5.0 41 117-161 6-46 (112)
183 cd00086 homeodomain Homeodomai 34.6 42 0.0009 19.5 2.3 30 10-46 22-51 (59)
184 PF08671 SinI: Anti-repressor 34.3 72 0.0016 16.4 3.1 12 175-186 17-28 (30)
185 cd03032 ArsC_Spx Arsenate Redu 34.1 1.5E+02 0.0033 20.2 5.4 32 165-197 65-96 (115)
186 PF09682 Holin_LLH: Phage holi 32.3 1.6E+02 0.0036 20.0 5.7 49 119-167 56-104 (108)
187 PRK12559 transcriptional regul 32.1 1.1E+02 0.0023 21.8 4.4 63 129-198 35-97 (131)
188 PF04783 DUF630: Protein of un 31.6 23 0.00049 21.6 0.7 10 1-10 1-10 (60)
189 cd05833 Ribosomal_P2 Ribosomal 31.0 1.7E+02 0.0036 20.2 5.0 40 117-160 4-43 (109)
190 PF03705 CheR_N: CheR methyltr 30.7 90 0.002 18.1 3.3 51 134-189 3-56 (57)
191 PRK10026 arsenate reductase; P 29.5 1.2E+02 0.0026 21.9 4.3 33 164-197 66-98 (141)
192 PF09824 ArsR: ArsR transcript 29.5 2.4E+02 0.0051 20.9 9.7 122 43-194 20-141 (160)
193 PLN02230 phosphoinositide phos 29.3 2.5E+02 0.0055 25.7 7.1 14 57-70 43-56 (598)
194 PLN02222 phosphoinositide phos 29.0 2.1E+02 0.0046 26.1 6.5 64 34-104 22-89 (581)
195 PRK01655 spxA transcriptional 28.9 1.7E+02 0.0036 20.7 4.9 33 164-197 64-96 (131)
196 KOG2301 Voltage-gated Ca2+ cha 28.8 38 0.00082 34.6 2.0 71 33-106 1410-1485(1592)
197 PF03979 Sigma70_r1_1: Sigma-7 28.6 80 0.0017 20.3 3.0 29 127-161 18-46 (82)
198 cd06404 PB1_aPKC PB1 domain is 28.5 1.2E+02 0.0025 19.9 3.6 22 111-132 56-77 (83)
199 COG4103 Uncharacterized protei 27.8 2.4E+02 0.0052 20.6 5.4 92 39-136 29-123 (148)
200 PF14162 YozD: YozD-like prote 27.7 1.4E+02 0.0029 17.6 4.6 35 130-164 7-41 (57)
201 PF12486 DUF3702: ImpA domain 27.4 1.5E+02 0.0032 21.8 4.4 37 116-152 71-107 (148)
202 KOG3442 Uncharacterized conser 27.2 1.4E+02 0.003 21.2 4.0 47 126-177 51-97 (132)
203 cd03033 ArsC_15kD Arsenate Red 26.9 1.4E+02 0.003 20.6 4.1 26 173-198 70-95 (113)
204 PF02337 Gag_p10: Retroviral G 26.8 2E+02 0.0043 19.1 5.0 53 134-186 8-61 (90)
205 PF03960 ArsC: ArsC family; I 26.5 39 0.00085 23.0 1.3 65 130-200 32-96 (110)
206 PRK12461 UDP-N-acetylglucosami 25.8 2.8E+02 0.0061 22.2 6.3 53 34-92 200-252 (255)
207 PF09373 PMBR: Pseudomurein-bi 25.4 75 0.0016 16.5 2.0 21 172-192 2-22 (33)
208 KOG1785 Tyrosine kinase negati 25.3 4.5E+02 0.0097 22.8 7.4 89 56-148 188-280 (563)
209 PF12486 DUF3702: ImpA domain 24.9 1.4E+02 0.003 21.9 3.9 29 38-68 67-95 (148)
210 PF02864 STAT_bind: STAT prote 24.7 1.5E+02 0.0033 23.8 4.4 53 130-182 178-231 (254)
211 cd07176 terB tellurite resista 24.7 1.2E+02 0.0026 20.1 3.5 12 55-66 15-26 (111)
212 PF11848 DUF3368: Domain of un 24.6 1.5E+02 0.0032 16.9 3.6 30 128-160 15-44 (48)
213 smart00389 HOX Homeodomain. DN 24.0 80 0.0017 18.0 2.2 26 12-44 24-49 (56)
214 TIGR01616 nitro_assoc nitrogen 23.8 1.8E+02 0.0039 20.5 4.3 26 173-198 71-96 (126)
215 PF14297 DUF4373: Domain of un 22.6 2.2E+02 0.0049 18.3 6.2 76 59-135 9-85 (87)
216 COG3956 Protein containing tet 22.1 2.8E+02 0.0061 23.5 5.5 39 165-203 298-341 (488)
217 PF09336 Vps4_C: Vps4 C termin 21.8 1.4E+02 0.003 18.2 2.9 27 130-160 29-55 (62)
218 PF09873 DUF2100: Uncharacteri 20.9 2.8E+02 0.006 21.6 4.9 15 91-105 39-53 (215)
219 PF11569 Homez: Homeodomain le 20.4 1.5E+02 0.0032 17.8 2.7 25 13-44 23-47 (56)
220 KOG1954 Endocytosis/signaling 20.3 1.9E+02 0.0042 25.0 4.3 28 111-138 474-501 (532)
221 PF06989 BAALC_N: BAALC N-term 20.2 71 0.0015 18.3 1.3 10 1-10 1-10 (53)
222 PF12767 SAGA-Tad1: Transcript 20.2 2E+02 0.0044 22.8 4.5 16 129-144 40-55 (252)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=167.11 Aligned_cols=151 Identities=28% Similarity=0.481 Sum_probs=139.4
Q ss_pred HHhhCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCC-CChHHHHHHHHHhcCCCCceeehHHH
Q 027657 21 LAAETPCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN-KKNLFADRIFDLFDLKRNGVIEFGEF 99 (220)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef 99 (220)
+...+. |+++++++++++|+.+|++ ++|.|++.+|..++..++. .+..++.+++..+|. +.+.|+|.+|
T Consensus 8 ~~~~~~-------~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~F 77 (160)
T COG5126 8 LLTFTQ-------LTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEF 77 (160)
T ss_pred hhhccc-------CCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHH
Confidence 555556 9999999999999999999 9999999999999987774 467889999999999 8999999999
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHH
Q 027657 100 VRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEE 179 (220)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~e 179 (220)
+.++.........+++++++|+.||+|++|+|+..|++.++..+ |..+++++++.++ ..+|.+++|.|+|++
T Consensus 78 l~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l----ge~~~deev~~ll----~~~d~d~dG~i~~~e 149 (160)
T COG5126 78 LTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL----GERLSDEEVEKLL----KEYDEDGDGEIDYEE 149 (160)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh----cccCCHHHHHHHH----HhcCCCCCceEeHHH
Confidence 99999988778889999999999999999999999999999988 9999999998888 799999999999999
Q ss_pred HHHHHHhChh
Q 027657 180 WKEFVKKNPS 189 (220)
Q Consensus 180 f~~~l~~~~~ 189 (220)
|.+.+...|.
T Consensus 150 F~~~~~~~~~ 159 (160)
T COG5126 150 FKKLIKDSPT 159 (160)
T ss_pred HHHHHhccCC
Confidence 9999887664
No 2
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.94 E-value=5e-25 Score=165.89 Aligned_cols=186 Identities=45% Similarity=0.681 Sum_probs=160.1
Q ss_pred CCccccccCCCCCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHH
Q 027657 1 MGCVLTKKTKQTPGYEEPTVLAAETPCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFAD 80 (220)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 80 (220)
||+..|.... ++.++.+...+..- ..|+..||..++.+|.+++++. ++|++++++|..+. ....++...
T Consensus 1 Mg~~~s~~~~----~~~~~~~~~~~~~~---~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~ 69 (187)
T KOG0034|consen 1 MGNLSSTLLS----DEDLEELQMYTGDP---TQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLAD 69 (187)
T ss_pred CCcccccccc----hhhhHHHHhccCCC---cccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHH
Confidence 8888887643 34566666666522 6699999999999999999864 78999999999877 334566789
Q ss_pred HHHHHhcCCCCce-eehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 027657 81 RIFDLFDLKRNGV-IEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETI 159 (220)
Q Consensus 81 ~l~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~ 159 (220)
+++..++.+++|. |+|++|+..++.+......+++++.+|++||.+++|+|+.+|+..++..++...... +++..+.+
T Consensus 70 rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i 148 (187)
T KOG0034|consen 70 RIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDI 148 (187)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHH
Confidence 9999999998888 999999999999997777778999999999999999999999999999986442222 58999999
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 160 VDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 160 ~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
+...|.++|.++||.|+++||.+++.+.|.+.+.+++++
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCCC
Confidence 999999999999999999999999999999999998764
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.93 E-value=4.9e-25 Score=165.99 Aligned_cols=179 Identities=32% Similarity=0.493 Sum_probs=155.8
Q ss_pred CCcc-ccccCCCCCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC--CCChH
Q 027657 1 MGCV-LTKKTKQTPGYEEPTVLAAETPCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNL 77 (220)
Q Consensus 1 mg~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~--~~~~~ 77 (220)
||.. .++++. +.++++.+.|. |++.+|+.+++.|..-+ ++|.++.++|+.++.... ..+..
T Consensus 1 m~~~~~~~~~~-----~~~e~l~~~t~-------f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~ 64 (193)
T KOG0044|consen 1 MGKKSNSKLQP-----ESLEQLVQQTK-------FSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASK 64 (193)
T ss_pred CCccccccCCc-----HHHHHHHHhcC-------CCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHH
Confidence 6665 555544 77999999999 99999999999999987 689999999999886644 34677
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC---CCCHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL---ILSDD 154 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~---~~~~~ 154 (220)
++..+|..+|.|++|.|+|.||+.+++... .+..++.++++|++||.||+|+|+++|+.+++.+++...+. +..+.
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 899999999999999999999999999998 58899999999999999999999999999999988766543 12244
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCC
Q 027657 155 VIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTL 196 (220)
Q Consensus 155 ~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~ 196 (220)
..++.+..+|+.+|.|+||.||++||.......|.++..++.
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 566778888999999999999999999999999999998844
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=8.2e-22 Score=145.72 Aligned_cols=143 Identities=25% Similarity=0.420 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcH
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALV 112 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 112 (220)
++..++..+..+|+.+|.+ ++|+|+..+|..++..++.. ....+..++..+|.+++|.|++.+|+..+.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5788999999999999999 99999999999999888855 56688999999999999999999999999876543333
Q ss_pred ----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 113 ----EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 113 ----~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
.+.++.+|+.||+|++|+|+..||+++|..+ |...+.++++.++ ..+|.|+||.|+|++|++++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh----CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 4599999999999999999999999999998 9999988887777 8999999999999999999875
No 5
>PTZ00183 centrin; Provisional
Probab=99.87 E-value=1.4e-20 Score=139.90 Aligned_cols=148 Identities=26% Similarity=0.364 Sum_probs=130.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCC-CChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC
Q 027657 32 CSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN-KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA 110 (220)
Q Consensus 32 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 110 (220)
.++++.++..+...|..+|.+ ++|.|+..+|..++...+. .....+..++..+|.+++|.|++.+|+.++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 349999999999999999999 9999999999999976653 3556789999999999999999999999887654455
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChh
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 189 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~ 189 (220)
.....++.+|+.+|.+++|+|+..||..++..+ +..++..++..++ ..+|.+++|.|++++|..++...|.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKEL----GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 667889999999999999999999999999877 8888887765555 7899999999999999999998775
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.85 E-value=1.4e-19 Score=133.08 Aligned_cols=145 Identities=24% Similarity=0.413 Sum_probs=126.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC
Q 027657 32 CSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA 110 (220)
Q Consensus 32 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 110 (220)
.+++++++..+...|..+|.+ ++|.|+.++|..++...+.. ....+..++..+|.+++|.|++++|+..+.......
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 458899999999999999999 99999999999988665533 455789999999999999999999999988765445
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
.....+..+|+.+|.+++|.|+.+||..++..+ +..++.+.+..++ ..+|.+++|.|+|+||+.++..
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHhc
Confidence 667889999999999999999999999999887 7788887765554 7899999999999999998764
No 7
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.8e-19 Score=127.88 Aligned_cols=145 Identities=27% Similarity=0.384 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCc
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHAL 111 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 111 (220)
.+++++-+.++..|..+|.+ ++|+|+.++|..++..++-. ....+.++....|+++.|.|+|++|+..+........
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred cccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 38899999999999999999 99999999998888887744 5667899999999999999999999999887666677
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
+.+++..+|+++|.|++|.|+..+|+.+...+ |++++++++.++| ..+|.+++|.|+-+||.++++..
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeL----genltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL----GENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHh----CccccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999999999999999888 9999999999999 79999999999999999998754
No 8
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=127.18 Aligned_cols=179 Identities=26% Similarity=0.408 Sum_probs=150.6
Q ss_pred CCccccccCCCCCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC---------CcccHHHHHHHHhcc
Q 027657 1 MGCVLTKKTKQTPGYEEPTVLAAETPCQSSSCSFTVCEVEALYELFKKLSSSIFDD---------GIIHKEEFQLALFRN 71 (220)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~---------g~i~~~e~~~~l~~~ 71 (220)
||+.+...+. +++...+..|. |+.++|.+++..|..+.++.+.. -.++.+.+..+ .
T Consensus 1 MGNK~~vFT~-----eqLd~YQDCTF-------FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM---P 65 (189)
T KOG0038|consen 1 MGNKQTVFTE-----EQLDEYQDCTF-------FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM---P 65 (189)
T ss_pred CCCccceeeH-----HHHhhhccccc-------ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC---h
Confidence 8887766555 99999999999 99999999999999997653321 12333333321 2
Q ss_pred CCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCC
Q 027657 72 KNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLIL 151 (220)
Q Consensus 72 ~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~ 151 (220)
.+..++..+++.+.+..+|.|.++|++|+..++.++...+.+-++..+|++||-|+++.|..+++...+..+. ...+
T Consensus 66 ELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT---r~eL 142 (189)
T KOG0038|consen 66 ELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT---RDEL 142 (189)
T ss_pred hhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh---hccC
Confidence 2345567789999999999999999999999999887777888899999999999999999999999998873 4678
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 152 SDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 152 ~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
++++++.++..+..++|.|+||+|++.||..++.+.|+++..+.++
T Consensus 143 s~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFHIR 188 (189)
T KOG0038|consen 143 SDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFHIR 188 (189)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhheec
Confidence 9999999999999999999999999999999999999999887654
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.82 E-value=1.7e-18 Score=123.06 Aligned_cols=146 Identities=19% Similarity=0.309 Sum_probs=129.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHh
Q 027657 26 PCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLG 104 (220)
Q Consensus 26 ~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 104 (220)
..++.-++|++.||++++++|..+|.| ++|.|++++|+.++..++.. ++.++..++... .|.|+|.-|+..+.
T Consensus 18 asSnvFamf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfG 91 (171)
T KOG0031|consen 18 ASSNVFAMFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFG 91 (171)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHH
Confidence 345556679999999999999999999 99999999999999888744 555667777664 78999999999999
Q ss_pred hhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH
Q 027657 105 VFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 184 (220)
Q Consensus 105 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l 184 (220)
.......+++.+..+|+.||.+++|.|..+.|+.+|... |.++++++|+.++ ..+-++..|.|.|..|..++
T Consensus 92 ekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~----gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 92 EKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTM----GDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHh----cccCCHHHHHHHH----HhCCcccCCceeHHHHHHHH
Confidence 888788999999999999999999999999999999988 9999999987776 78888888999999999988
Q ss_pred H
Q 027657 185 K 185 (220)
Q Consensus 185 ~ 185 (220)
.
T Consensus 164 t 164 (171)
T KOG0031|consen 164 T 164 (171)
T ss_pred H
Confidence 7
No 10
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.74 E-value=1e-16 Score=112.20 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCC--CCceeehHHHHHHHhhhCCC-
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLK--RNGVIEFGEFVRSLGVFHPH- 109 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~~~- 109 (220)
+++++...++++|..+|.. ++|.|+..+..+.|+.++.+ .+..+.+......++ +-.+++|++|+..+..+...
T Consensus 5 ~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 7889999999999999999 99999999999999888855 456777777777766 45789999999998876543
Q ss_pred -CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 110 -ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 110 -~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
....+.+..-++.||++++|.|...||+++|.++ |..+++++++.++ .--.|.+|.|.|+.|++.+..
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl----Gekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL----GEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIMS 151 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH----HhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHhc
Confidence 3456888999999999999999999999999999 9999999999988 444566799999999997753
No 11
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.72 E-value=2.7e-16 Score=118.49 Aligned_cols=140 Identities=24% Similarity=0.339 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC-CC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHH
Q 027657 38 EVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK-NK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDK 115 (220)
Q Consensus 38 ~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~-~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 115 (220)
.-..+...|...|++ ++|.|+.+|+..+|.... .. ....++.++..+|.+.+|+|++.||...|..+. .
T Consensus 55 ~~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~ 125 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------Q 125 (221)
T ss_pred ccHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------H
Confidence 556788899999999 999999999999985332 22 456789999999999999999999999997655 4
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhc
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM 194 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~ 194 (220)
++.+|+.||.|++|.|+..||+.+|..+ |..++++-.+.++ +.+|..++|.|.+++|++++...+.+.+.+
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~----Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQL----GYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHc----CcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 9999998776666 788877789999999999999887777766
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.57 E-value=8.8e-14 Score=113.70 Aligned_cols=139 Identities=26% Similarity=0.403 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC--ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCc
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK--KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHAL 111 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 111 (220)
..++.-.++...|+.+|.+ ++|.++..++...+..+..+ +...+..++...|.|.+|.++|+||..++..
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------ 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------
Confidence 5577778899999999999 99999999999888665533 4456789999999999999999999999853
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhCh
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 188 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~ 188 (220)
.+.++..+|+.+|.++||.|+..|+...+..+ |.++++++++.++ ..+|+++.+.|+++||...+...|
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~----gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL----GIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh----CCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCC
Confidence 45679999999999999999999999999988 9999999887755 788999999999999999998877
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=4.7e-13 Score=84.75 Aligned_cols=66 Identities=32% Similarity=0.623 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH
Q 027657 115 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 184 (220)
Q Consensus 115 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l 184 (220)
+++.+|+.+|+|++|+|+.+||..++..+ +...++..+...+..+|..+|.|++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999988 7777788999999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.39 E-value=9.3e-12 Score=109.71 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC-CCC-hH---HHHHHHHHhcCCCCceeehHHHHHHHhhhCC
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK-NKK-NL---FADRIFDLFDLKRNGVIEFGEFVRSLGVFHP 108 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~-~~~-~~---~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 108 (220)
|+.+|+..+++.|..+|++ ++|.+ +..++..++ ..+ .. ++..+|..+|.+++|.|+++||+.++..+.
T Consensus 137 f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 137 FVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred ccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 9999999999999999999 99997 555555555 232 22 378999999999999999999999998765
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 027657 109 HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 109 ~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
....++++..+|+.||+|++|+|+.+||..++..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4567888999999999999999999999999987
No 15
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-11 Score=90.77 Aligned_cols=105 Identities=25% Similarity=0.339 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHH-H
Q 027657 77 LFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDD-V 155 (220)
Q Consensus 77 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~-~ 155 (220)
..+..+|..+|.+++|.|+..++..++..+. ......++..+++.+|.+++|.|+.+||..++... ....... .
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~----~~~~~~~~~ 82 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL----GEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh----hcccccccc
Confidence 3568999999999999999999999998887 56889999999999999999999999999999876 2222221 1
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 156 IETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 156 ~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
....++.+|..+|.|++|.||..|+.+++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 2234678889999999999999999999987
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.2e-11 Score=98.66 Aligned_cols=137 Identities=22% Similarity=0.288 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC--ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCc-H
Q 027657 36 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK--KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHAL-V 112 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-~ 112 (220)
.+.+.+-.+.|+..|.| ++|.++.+||..+|...-.+ ....+...+..+|+|++|.|+++||+.-+-...+... +
T Consensus 159 ~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc
Confidence 55788888999999999 99999999999777432212 3446788899999999999999999987765442111 1
Q ss_pred ---HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHH
Q 027657 113 ---EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 182 (220)
Q Consensus 113 ---~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~ 182 (220)
..+-.+.+...|+|++|+++.+|+++-+.-- +......++.-+ +...|.|+||++|++|.+.
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~----~~d~A~~EA~hL----~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS----EQDHAKAEARHL----LHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhcccCCC----CccHHHHHHHHH----hhhhccCccccccHHHHhh
Confidence 2334577888999999999999999765321 344444454444 4889999999999998664
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.21 E-value=6.3e-11 Score=79.07 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCC-CCCCcccHHHHHHHHHH-HhhhcCCCCCH-HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 114 DKIAFAFRLYDL-RQTGFIEREELKEMVLA-LLHESDLILSD-DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 114 ~~~~~~F~~~D~-d~~G~I~~~E~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
..++.+|+.||+ +++|+|+..||+.+|.. + |..++. +++++++ ..+|.|+||.|+|+||..++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el----g~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL----PHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh----hhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 458899999999 99999999999999988 6 666776 6665555 89999999999999999988763
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.19 E-value=1.7e-10 Score=84.51 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 157 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~ 157 (220)
.+++.|+.+|++++|.|+..++..++..+. ...+...+..+|..+|. ++|.|+..+|..+|...+. ..-+.
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~---~~~~~---- 91 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK---RGDKE---- 91 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc---cCCcH----
Confidence 468899999999999999999999998444 78899999999999999 9999999999999976532 22223
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 158 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 158 ~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+-+.++|+.+|.|++|.|+..+++.++..
T Consensus 92 Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 92 EELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 33577889999999999999999999985
No 19
>PTZ00183 centrin; Provisional
Probab=99.19 E-value=2.9e-10 Score=84.15 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 157 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~ 157 (220)
.+..+|..+|.+++|.|+..||..++.... .......+..+|..+|.+++|.|+..||..++.... ......
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~~~~---- 89 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GERDPR---- 89 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCCCcH----
Confidence 467889999999999999999999987654 345567899999999999999999999999886542 122222
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 158 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 158 ~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..++.+|..+|.+++|.|+.+||..++..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 33577789999999999999999999875
No 20
>PTZ00184 calmodulin; Provisional
Probab=99.18 E-value=4.1e-10 Score=82.37 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 157 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~ 157 (220)
.....|..+|.+++|.|++.||..++.... .....+.+..+|+.+|.+++|.|+.+||..++...+. ... ..
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~---~~~----~~ 83 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK---DTD----SE 83 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc---CCc----HH
Confidence 357889999999999999999999887654 3445678999999999999999999999998875421 111 22
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 158 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 158 ~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..+..+|..+|.+++|.|+.++|..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 34677889999999999999999998864
No 21
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=5.8e-10 Score=84.49 Aligned_cols=115 Identities=22% Similarity=0.288 Sum_probs=94.0
Q ss_pred ChHHHHHHHHHhcCC-CCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCH
Q 027657 75 KNLFADRIFDLFDLK-RNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSD 153 (220)
Q Consensus 75 ~~~~~~~l~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~ 153 (220)
....+..++..+-.+ .+|.++.++|..+++.+.+......-...+|+.||.|++|.|+..||..++..+ +.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~--------~r 95 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT--------SR 95 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH--------cC
Confidence 445566777776554 489999999999999988778888999999999999999999999998888765 23
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 154 DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 154 ~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
..+++.++++|..+|.|++|.|+++|+..++.....+......|
T Consensus 96 Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 96 GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 34455678999999999999999999999998866666553333
No 22
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.1e-09 Score=87.52 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCC-----
Q 027657 36 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH----- 109 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~----- 109 (220)
.+.-.++...+..+|.+ ++|.|+..++...+...... ....+.+-|...|.+.+|.|+|++++.........
T Consensus 73 ee~~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~ 150 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFP 150 (325)
T ss_pred chhHHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccc
Confidence 34566788888999988 99999999999877443211 23345778888999999999999999887643210
Q ss_pred -C-------cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHH
Q 027657 110 -A-------LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWK 181 (220)
Q Consensus 110 -~-------~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~ 181 (220)
. .-...-+.-|+.-|.|++|.++++||..+| .+.-.+....-++..-....|.|+||.|+++||+
T Consensus 151 d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 151 DEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred cchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc-------ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHH
Confidence 0 011234677999999999999999999987 4333444444556666789999999999999999
Q ss_pred HHHHhChh
Q 027657 182 EFVKKNPS 189 (220)
Q Consensus 182 ~~l~~~~~ 189 (220)
.=|...+.
T Consensus 224 gd~~~~~~ 231 (325)
T KOG4223|consen 224 GDLYSHEG 231 (325)
T ss_pred hHHhhccC
Confidence 98877554
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.13 E-value=2.2e-09 Score=81.45 Aligned_cols=128 Identities=19% Similarity=0.286 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcH
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALV 112 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 112 (220)
.|+.+-++-+.. .+|.+ .+|+|..+||..+-.. -..++.+|..+|.|++|+|+..|+..++..+. ...+
T Consensus 90 ~Fs~~TcrlmI~---mfd~~--~~G~i~f~EF~~Lw~~-----i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Ls 158 (221)
T KOG0037|consen 90 PFSIETCRLMIS---MFDRD--NSGTIGFKEFKALWKY-----INQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YRLS 158 (221)
T ss_pred CCCHHHHHHHHH---HhcCC--CCCccCHHHHHHHHHH-----HHHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cCCC
Confidence 366666555554 45777 9999999999954422 23468999999999999999999999998776 5677
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCC--cCHHHHHHHHH
Q 027657 113 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGK--IDPEEWKEFVK 185 (220)
Q Consensus 113 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~--Is~~ef~~~l~ 185 (220)
.+-...+++.||..++|.|..++|.+++..+ ..+-++|...|.+.+|. |+|++|+.+..
T Consensus 159 pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 159 PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHHHHHHhccccCCceeHHHHHHHHHHH--------------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 8889999999998889999999999998765 33556778889888875 78999988654
No 24
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.12 E-value=5.3e-10 Score=93.07 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=116.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHH----hcCCCCceeehHHHHHHHhhhC
Q 027657 32 CSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDL----FDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 32 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~----~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
.-|+.++...++..|..+|++ ++|.|+++++...-... .....++++|.. .-.-.+|+++|++|+.++....
T Consensus 270 ~~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~d~t--lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 270 RYFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYGDHT--LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred hheeHHHHHHHHHHHhhhccc--cccccCHHHHHHHhccc--hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 348899999999999999999 99999999999654222 236678999993 3344678999999999998887
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHH
Q 027657 108 PHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD-LILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 182 (220)
Q Consensus 108 ~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~ 182 (220)
.....+.+.-.|+.+|.+++|.|+..|++-+....++... ....+--++.++.++++.+.+...+.||.++|..
T Consensus 346 -~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 346 -DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred -cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 5777888999999999999999999999998877655421 1111113456678888999888889999999997
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.12 E-value=4.6e-10 Score=74.95 Aligned_cols=69 Identities=25% Similarity=0.419 Sum_probs=57.1
Q ss_pred HHHHHHHHhcC-CCCCC-cccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 114 DKIAFAFRLYD-LRQTG-FIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 114 ~~~~~~F~~~D-~d~~G-~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..++.+|+.|| ++++| .|+.+||+.+|..-+.. .+...++++++.++ ..+|.|++|.|+|++|..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 45889999998 79999 59999999999981100 17778888877777 7889999999999999998865
No 26
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.11 E-value=1.2e-09 Score=90.53 Aligned_cols=139 Identities=20% Similarity=0.242 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc---cCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC-----
Q 027657 39 VEALYELFKKLSSSIFDDGIIHKEEFQLALFR---NKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA----- 110 (220)
Q Consensus 39 i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~---~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~----- 110 (220)
-..+...|+.+|.. .+|+|+..++..++.. +++++.....+ ....+.+|.|.|...+..+..-....
T Consensus 463 ~sdL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~k---la~~s~d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPK---LANGSDDGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred hhHHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhh---ccCCCcCcceehHhHHHHhhhhhHHHHHHhH
Confidence 44567789999999 9999999999988743 33333222211 22345577898888776654321110
Q ss_pred ------cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH
Q 027657 111 ------LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 184 (220)
Q Consensus 111 ------~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l 184 (220)
.....+..+|+.+|.|++|.|+.+||++++.-+.......++...+.+++ ..+|.|+||.|++.||..++
T Consensus 538 lvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHH
Confidence 11345788999999999999999999999887766667778887776666 78999999999999999987
Q ss_pred Hh
Q 027657 185 KK 186 (220)
Q Consensus 185 ~~ 186 (220)
+-
T Consensus 614 rl 615 (631)
T KOG0377|consen 614 RL 615 (631)
T ss_pred hh
Confidence 64
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.98 E-value=3.8e-09 Score=71.40 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=53.8
Q ss_pred HHHHHHHHhcC-CCCCC-cccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 114 DKIAFAFRLYD-LRQTG-FIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 114 ~~~~~~F~~~D-~d~~G-~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
..++.+|+.|| +|++| +|+..||+.++...+.. .....++.+++.++ ..+|.|++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHH
Confidence 45788899999 78998 59999999999763211 12333555555555 88999999999999999988764
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.96 E-value=2.4e-09 Score=67.59 Aligned_cols=60 Identities=38% Similarity=0.551 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-----ChHHHHHHHHHhcCCCCceeehHHHHHH
Q 027657 41 ALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-----KNLFADRIFDLFDLKRNGVIEFGEFVRS 102 (220)
Q Consensus 41 ~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-----~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 102 (220)
+++++|+.+|.+ ++|+|+.+||..++...+.. ....+..+|..+|.|++|.|++.||+.+
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 356677777777 77777777777777555422 1223455566667777777777776654
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.96 E-value=4.1e-09 Score=70.32 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCC-CC-CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 114 DKIAFAFRLYDL-RQ-TGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 114 ~~~~~~F~~~D~-d~-~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..+..+|..||. ++ +|+|+.+||++++...+ ..|..++++++++++ +.+|.|++|.|+|+||..++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~-~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKEL-TIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHH-hcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 347789999998 67 89999999999996411 127888998887776 7889999999999999998875
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.96 E-value=4.5e-09 Score=71.23 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCC-CC-CCcccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 113 EDKIAFAFRLYDL-RQ-TGFIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 113 ~~~~~~~F~~~D~-d~-~G~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
...++.+|+.||. |+ +|.|+..||+.++...+.. .+..+++++++.++ ..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999997 97 6999999999999863211 25566777666555 78899999999999999988764
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.95 E-value=5.8e-09 Score=70.39 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcC-CCCCCc-ccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhCh
Q 027657 113 EDKIAFAFRLYD-LRQTGF-IEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 188 (220)
Q Consensus 113 ~~~~~~~F~~~D-~d~~G~-I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~ 188 (220)
.+.++.+|+.|| .+++|+ |+..||+.+|...+.. .+...++++++.++ ..+|.+++|.|+|++|+.++...-
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 466899999997 999995 9999999999762211 13345666665555 788999999999999999887643
No 32
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.91 E-value=8.9e-09 Score=68.71 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCCcccHHHHHHHHhc-cCCC-Ch-HHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 36 VCEVEALYELFKKLSS-SIFDDGIIHKEEFQLALFR-NKNK-KN-LFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~-~~~~~g~i~~~e~~~~l~~-~~~~-~~-~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+..+..+..+|+.+|+ + ++|+|+..||+.++.. ++.. .. ..++.++..+|.|++|.|+|+||+..+..+.
T Consensus 4 E~ai~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4568889999999999 8 9999999999999876 5522 23 6789999999999999999999998886543
No 33
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=3.6e-08 Score=71.21 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 157 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~ 157 (220)
.++..|..++.+++|+|++.|+..++..+. .....+++..+..-+|++++|.|+.++|++.+...+.+ .-+.+++
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e---~dt~eEi- 108 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE---RDTKEEI- 108 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc---cCcHHHH-
Confidence 467889999999999999999987776665 56778899999999999999999999999998876543 3366554
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 158 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 158 ~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..+|..+|-|++|.|+..+|..++..
T Consensus 109 ---~~afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 109 ---KKAFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred ---HHHHHcccccCCCCcCHHHHHHHHHH
Confidence 55668999999999999999998876
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.88 E-value=1.7e-08 Score=68.69 Aligned_cols=71 Identities=15% Similarity=0.371 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
.++++++..+...|..+|.+ ++|.|+.+++..++...+ .+...+..++..+|.+++|.|+|+||+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSG-LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 37889999999999999999 999999999999887654 345567888888888888889999998877543
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.86 E-value=1.1e-08 Score=64.57 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=50.8
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhCh
Q 027657 117 AFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 188 (220)
Q Consensus 117 ~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~ 188 (220)
+.+|+.+|++++|.|+.+|+..++..+ +. +++.+. .++..+|.+++|.|++++|+.++...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~--~~~~~~----~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GL--PRSVLA----QIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CC--CHHHHH----HHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 568999999999999999999998765 43 555554 445889999999999999999886544
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=98.84 E-value=4e-08 Score=87.07 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHH---HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCH
Q 027657 77 LFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVED---KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSD 153 (220)
Q Consensus 77 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~ 153 (220)
..+.+.|..+|.|++|.+ +......+.. ....+. .+..+|+.+|.|++|.|+.+||..++..+ +...++
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrslG~---~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l----g~~~se 214 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSCSI---EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF----GNLVAA 214 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHhCC---CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh----ccCCCH
Confidence 346778999999999987 3443333321 122233 38999999999999999999999999876 555565
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 154 DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 154 ~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
++ +..+|..+|.|++|.|+++||.+++...
T Consensus 215 EE----L~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 215 NK----KEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HH----HHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 55 4566689999999999999999998874
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.84 E-value=1.2e-08 Score=68.17 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 113 EDKIAFAFRLYDL--RQTGFIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 113 ~~~~~~~F~~~D~--d~~G~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
...++.+|..||. +++|.|+.+||..++...+.. .+...+..+++.+ +..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHH
Confidence 4568899999999 899999999999999763211 1122345555444 588999999999999999988764
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.83 E-value=2.8e-08 Score=67.11 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCC-cccHHHHHHHHhcc------CCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 36 VCEVEALYELFKKLS-SSIFDDG-IIHKEEFQLALFRN------KNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d-~~~~~~g-~i~~~e~~~~l~~~------~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+.-+..+.++|..+| .+ ++| +|+..||+.++... .......+..++..+|.|++|.|+|+||+..+..+.
T Consensus 6 e~a~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 456788888999998 67 888 59999999988541 122455789999999999999999999999887654
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.82 E-value=2.9e-08 Score=67.47 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhh
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLI 191 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~ 191 (220)
....+..+|+.+|.+++|.|+.+|++.++... + ++++++..+ +..+|.+++|.|++++|+.++.......
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~--~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----G--LPQTLLAKI----WNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----C--CCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999764 3 566665544 4789999999999999999887654444
No 40
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.80 E-value=4e-08 Score=65.56 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCC-cccHHHHHHHHhc-----cCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 36 VCEVEALYELFKKLS-SSIFDDG-IIHKEEFQLALFR-----NKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d-~~~~~~g-~i~~~e~~~~l~~-----~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+.-+..+.++|+.+| ++ ++| .|+..+|+.+|.. .+.. ....+..++..+|.|++|.|+|++|+..+....
T Consensus 4 e~~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 4 EKAMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456788999999998 78 999 5999999999976 5533 456689999999999999999999998876543
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.79 E-value=3.1e-08 Score=69.36 Aligned_cols=63 Identities=27% Similarity=0.437 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
....+.++|..+|.|++|.|+.+|+..+. + + .. +..+..+|..+|.|+||.||++||...+..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~--~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----D--PN----EHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----c--ch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999875 1 1 11 234567779999999999999999999843
No 42
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.77 E-value=7e-08 Score=73.11 Aligned_cols=108 Identities=23% Similarity=0.222 Sum_probs=81.6
Q ss_pred CCCHHHHHHHH---------HHHHHHcCCCCCCCc-ccHHHHHHHHhccCCC--ChHHHHHHHHHhcCCCCceeehHHHH
Q 027657 33 SFTVCEVEALY---------ELFKKLSSSIFDDGI-IHKEEFQLALFRNKNK--KNLFADRIFDLFDLKRNGVIEFGEFV 100 (220)
Q Consensus 33 ~~~~~~i~~l~---------~~F~~~d~~~~~~g~-i~~~e~~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~ 100 (220)
.++.+|+..+- +++..++.+ ++|. |+.++|...+...... ....++=.|+.+|.+++|.|+.+|+.
T Consensus 50 ~lt~eef~~i~~~~~Np~~~rI~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~ 127 (187)
T KOG0034|consen 50 YLTKEEFLSIPELALNPLADRIIDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELK 127 (187)
T ss_pred ccCHHHHHHHHHHhcCcHHHHHHHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 36666665543 344556666 7777 9999999988443322 23355668999999999999999999
Q ss_pred HHHhhhCCCCcH------HHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 027657 101 RSLGVFHPHALV------EDKIAFAFRLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 101 ~~~~~~~~~~~~------~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
..+..+...... ..-+...|..+|.|++|.|+.+||.+++..
T Consensus 128 ~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 128 QILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 999887753332 344678899999999999999999999854
No 43
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.76 E-value=2.7e-08 Score=60.09 Aligned_cols=52 Identities=29% Similarity=0.570 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 127 QTGFIEREELKEMVLALLHESDLI-LSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 127 ~~G~I~~~E~~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
.+|.|+.++|+.+|..+ |.. ++++++..++ ..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~----g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL----GIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT----TSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh----CCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999766 777 9998875555 8999999999999999998864
No 44
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.75 E-value=7.6e-08 Score=64.33 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=53.7
Q ss_pred HHHHHHHHHh-cCCCCCC-cccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 113 EDKIAFAFRL-YDLRQTG-FIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 113 ~~~~~~~F~~-~D~d~~G-~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
...+..+|+. +|++|+| +|+.+||+.++...+.. .+...++.+++.++ ..+|.|+||.|+|+||++++...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 3557889999 7788876 99999999999765221 12234455665555 89999999999999999988753
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.75 E-value=6.4e-08 Score=59.33 Aligned_cols=61 Identities=39% Similarity=0.594 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 184 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l 184 (220)
+..+|..+|.+++|.|+..|+..++..+ +...+.+.+.. +|..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~----~~~~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL----GEGLSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999887 77777765544 4588899999999999998875
No 46
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.69 E-value=1.7e-07 Score=62.49 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHcC-CCCC-CCcccHHHHHHHHhc---cCC-CChHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 36 VCEVEALYELFKKLSS-SIFD-DGIIHKEEFQLALFR---NKN-KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~-~~~~-~g~i~~~e~~~~l~~---~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
++.+..+...|.+++. + + +|+|+.+||+.++.. .+. .....+.++++.+|.|++|.|+|+||+..+..+
T Consensus 6 e~~~~~~i~~F~~y~~~~--~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGRE--GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5678889999999997 5 5 789999999999852 342 356788999999999999999999999887654
No 47
>PF14658 EF-hand_9: EF-hand domain
Probab=98.67 E-value=1.2e-07 Score=58.82 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=54.2
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhhcCCCCC-CCcCHHHHHHHHHh
Q 027657 118 FAFRLYDLRQTGFIEREELKEMVLALLHESDL-ILSDDVIETIVDKSFSDADTNGD-GKIDPEEWKEFVKK 186 (220)
Q Consensus 118 ~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~~d-g~Is~~ef~~~l~~ 186 (220)
.+|.+||.++.|.|...++..+|+++ +. ..++.+++.+. ..+|+++. |.|+++.|...|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999998 66 77777777777 79999998 99999999999875
No 48
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.67 E-value=9.6e-08 Score=73.76 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC----CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC---
Q 027657 38 EVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK----NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA--- 110 (220)
Q Consensus 38 ~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~--- 110 (220)
--+.+...|.+.|.| .+|.|+..++++.+.... .......+..|+..|+|++|.|+++||..-+.......
T Consensus 99 srrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 456788899999998 999999999998874321 11222345678889999999999999977654332110
Q ss_pred --------------------------------c------------------------HHHHHHHHHHhcCCCCCCcccHH
Q 027657 111 --------------------------------L------------------------VEDKIAFAFRLYDLRQTGFIERE 134 (220)
Q Consensus 111 --------------------------------~------------------------~~~~~~~~F~~~D~d~~G~I~~~ 134 (220)
. -..-++.+.+-+|+||+-.++..
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvp 256 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVP 256 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecch
Confidence 0 00124557778899999999999
Q ss_pred HHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 135 ELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 135 E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
||.......+.. .++.+.+..++...+++-..+|.|+||.+|++|+..++.-
T Consensus 257 eFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP 309 (362)
T KOG4251|consen 257 EFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDP 309 (362)
T ss_pred hhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCc
Confidence 998865432221 3566777777777777778899999999999999988643
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.66 E-value=1.5e-07 Score=62.86 Aligned_cols=69 Identities=26% Similarity=0.456 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCcccHHHHHHHHhc-cCC-----CChHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 36 VCEVEALYELFKKLSS--SIFDDGIIHKEEFQLALFR-NKN-----KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~--~~~~~g~i~~~e~~~~l~~-~~~-----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
++++..+..+|..+|+ + ++|.|+..+|..++.. .+. .....+..++..+|.+++|.|+|++|+..+...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5688889999999999 8 9999999999988854 221 135678889999999999999999998887643
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.63 E-value=1.9e-07 Score=58.75 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhh
Q 027657 43 YELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 105 (220)
Q Consensus 43 ~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 105 (220)
+..|..+|++ ++|.|+.+++..++...+. +...+..++..+|.+++|.|++.||+.++..
T Consensus 2 ~~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3467777777 7788888887777765543 4556677777777777777887777776654
No 51
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.62 E-value=2e-07 Score=62.78 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCC-cccHHHHHHHHhc-cC-----CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 36 VCEVEALYELFKKLS-SSIFDDG-IIHKEEFQLALFR-NK-----NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d-~~~~~~g-~i~~~e~~~~l~~-~~-----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+.-+..+.++|..+| ++ ++| .|+..+|..+|.. .+ ......+..++..+|.+++|.|+|++|+.++..+.
T Consensus 5 e~~~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 5 ETAMETLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 344677888999996 88 999 4999999988854 32 12456788999999999999999999988876544
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.62 E-value=3.1e-07 Score=61.38 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCC-cccHHHHHHHHhccC------CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 36 VCEVEALYELFKK-LSSSIFDDG-IIHKEEFQLALFRNK------NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 36 ~~~i~~l~~~F~~-~d~~~~~~g-~i~~~e~~~~l~~~~------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+..+..+..+|.. .|++ ++| +|+.+||+.++.... ......+..++..+|.|++|.|+|+||+..+..+.
T Consensus 5 e~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 5 ERCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5678889999999 6677 765 999999999885531 12345789999999999999999999998876543
No 53
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.58 E-value=4.1e-07 Score=61.56 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcC-CCCC-CCcccHHHHHHHHhc-----cC-CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 37 CEVEALYELFKKLSS-SIFD-DGIIHKEEFQLALFR-----NK-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 37 ~~i~~l~~~F~~~d~-~~~~-~g~i~~~e~~~~l~~-----~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
.-+..++.+|..+|. + + +|.|+..||..++.. ++ ......+..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 5 HAMESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 346678888888886 7 7 699999999988754 22 2245678888999999999999999998877543
No 54
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.57 E-value=1.7e-06 Score=81.01 Aligned_cols=139 Identities=19% Similarity=0.295 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC--------CCChHHHHHHHHHhcCCCCceeehHHHHHHHh
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--------NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLG 104 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~--------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 104 (220)
+.|++++..+.-+|..+|++ .+|.++.++|..+|..+| ..+.+..++++...|++.+|.|+..+|..++.
T Consensus 2246 GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 48999999999999999999 999999999999996644 12567889999999999999999999999987
Q ss_pred hhCC-CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCC----CCCCcCHHH
Q 027657 105 VFHP-HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTN----GDGKIDPEE 179 (220)
Q Consensus 105 ~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~----~dg~Is~~e 179 (220)
...+ .-.....+..+|+.+|. +.-||+.+++... +++++++-.+..+-..+++. -.+.+.|.+
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-----------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~d 2391 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-----------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKD 2391 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-----------CCHHHHHHHHHHhhhhcccccCCCccccccHHH
Confidence 5443 22334589999999998 7889999988664 46777776666665666653 234589999
Q ss_pred HHHHHH
Q 027657 180 WKEFVK 185 (220)
Q Consensus 180 f~~~l~ 185 (220)
|++.+-
T Consensus 2392 fv~sl~ 2397 (2399)
T KOG0040|consen 2392 FVNSLF 2397 (2399)
T ss_pred HHHHHh
Confidence 988653
No 55
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.56 E-value=1.3e-06 Score=72.35 Aligned_cols=98 Identities=21% Similarity=0.351 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHH
Q 027657 76 NLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDV 155 (220)
Q Consensus 76 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~ 155 (220)
+..++.+|..+|.+++|.|+..+....+..+.......+-...+|+..|.|.+|.++++||++.+..-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------------ 80 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------------ 80 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------------
Confidence 44578999999999999999999999988877555677788899999999999999999999998643
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 156 IETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 156 ~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+.-+..+|..+|.++||.|..+|..+.++.
T Consensus 81 -E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 81 -ELELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred -HHHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 122567789999999999999999998875
No 56
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.55 E-value=1e-07 Score=76.35 Aligned_cols=127 Identities=22% Similarity=0.298 Sum_probs=100.5
Q ss_pred CCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHH
Q 027657 55 DDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIERE 134 (220)
Q Consensus 55 ~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~ 134 (220)
+++.|...+|...+ ..+-......+|..||.+++|.++|.|....++.+++......-+..+|+.|+.+.||++...
T Consensus 240 kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~ 316 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEH 316 (412)
T ss_pred cCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchH
Confidence 45566666655433 112224568899999999999999999999999999877888889999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhh
Q 027657 135 ELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKN 193 (220)
Q Consensus 135 E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~ 193 (220)
+|..+++..+.-.... +-.+|..++...+|+|++.+|.+++...|.+...
T Consensus 317 ~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 317 ILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred HHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 9999888764322122 2345678888889999999999999999998854
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.55 E-value=1.1e-06 Score=73.22 Aligned_cols=130 Identities=23% Similarity=0.392 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC----ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHH
Q 027657 42 LYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK----KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIA 117 (220)
Q Consensus 42 l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 117 (220)
+.--|..+|+. .+|.|+..+|...|...... ....++++-..++.++. .|+++||+.+..-.. +- ..+.
T Consensus 320 l~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~-gISl~Ef~~Ff~Fl~-~l---~dfd 392 (489)
T KOG2643|consen 320 LELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK-GISLQEFKAFFRFLN-NL---NDFD 392 (489)
T ss_pred HHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC-CcCHHHHHHHHHHHh-hh---hHHH
Confidence 33457788887 77999999999887443322 23355667777776644 499999999886554 22 2344
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 118 FAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 118 ~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
.|...|-. ..+.|+..+|+++.... .|.++++.. +..+|..+|.|+||.|+.+||+.+|++
T Consensus 393 ~Al~fy~~-Ag~~i~~~~f~raa~~v---tGveLSdhV----vdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 393 IALRFYHM-AGASIDEKTFQRAAKVV---TGVELSDHV----VDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHh---cCcccccce----eeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 44444432 35789999999988765 377888753 455578999999999999999999986
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.54 E-value=5.3e-07 Score=63.16 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMV 140 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l 140 (220)
.+...|..+|.|++|.|+.+|+..+. ....+..+..+|..+|.|++|.||.+||..++
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34556666666666666666666554 12334555666666777777777777776666
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.52 E-value=4.9e-07 Score=60.36 Aligned_cols=67 Identities=31% Similarity=0.467 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCC--CCCcccHHHHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 114 DKIAFAFRLYDLR--QTGFIEREELKEMVLALLHESDLILS----DDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 114 ~~~~~~F~~~D~d--~~G~I~~~E~~~~l~~~~~~~~~~~~----~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
..+...|+.|+.. ++|.|+.+||+.++...+ +..++ ++++.. +|..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~---g~~~t~~~~~~~v~~----i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKEL---PNFLKKEKNQKAIDK----IFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHh---hHhhccCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999866 478999999999997432 33344 555544 4588999999999999999988754
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.50 E-value=1.5e-07 Score=48.98 Aligned_cols=28 Identities=39% Similarity=0.520 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 027657 115 KIAFAFRLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 115 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
+++.+|+.||+|++|+|+.+||..++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3677888888888888888888888754
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.49 E-value=7.8e-07 Score=54.35 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 027657 80 DRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEM 139 (220)
Q Consensus 80 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~ 139 (220)
..+|..+|.+++|.|++.+|..++.... ...+.+.+..+|..+|.+++|.|+.+||..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 3445555555555555555555554433 2334445555555555555555555555443
No 62
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.47 E-value=5.3e-06 Score=70.17 Aligned_cols=148 Identities=14% Similarity=0.234 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC--CCChH-HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNL-FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA 110 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~--~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 110 (220)
-.+++++.++-.|...+.+ +..+++.++|.+....+- ...+. .+.-+-...|...||-|+|+||..+-..+|.
T Consensus 30 a~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~-- 105 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA-- 105 (694)
T ss_pred CChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC--
Confidence 6688999999999999998 999999999987653222 22333 3444445557778999999999988776663
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC--CCC-----------------CHHHH--------HHHHHHH
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD--LIL-----------------SDDVI--------ETIVDKS 163 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~--~~~-----------------~~~~~--------~~~~~~~ 163 (220)
+......+|+.||+.++|.++.+++..++.+.--... .++ +-.+. .+-..+.
T Consensus 106 -pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qa 184 (694)
T KOG0751|consen 106 -PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQA 184 (694)
T ss_pred -chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999876411100 011 11111 1223566
Q ss_pred HhhcCCCCCCCcCHHHHHHHHHh
Q 027657 164 FSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 164 f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
|...|..++|.||--+|...+.+
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhh
Confidence 77888899999988888887765
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.44 E-value=1.1e-06 Score=52.98 Aligned_cols=50 Identities=30% Similarity=0.471 Sum_probs=27.4
Q ss_pred CceeehHHHHHHHhhhCCCC-cHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 027657 91 NGVIEFGEFVRSLGVFHPHA-LVEDKIAFAFRLYDLRQTGFIEREELKEMVL 141 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~ 141 (220)
+|.|+.++|..++..+. .. ...+++..+|..+|.+++|.|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 45566666666553332 22 4444466666666666666666666665553
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.41 E-value=4.9e-06 Score=62.48 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcH
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALV 112 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 112 (220)
|++.+|+.+...|..+|.+ .||+|+..|++.++.+++-+ ...-.+.++...|.|.+|+|+|.+|+.++..-......
T Consensus 93 FsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 8999999999999999999 99999999999999888855 45567889999999999999999999988765433322
Q ss_pred -HHHHHHHHHh--cCCCCCCcccHHHHHHHHH
Q 027657 113 -EDKIAFAFRL--YDLRQTGFIEREELKEMVL 141 (220)
Q Consensus 113 -~~~~~~~F~~--~D~d~~G~I~~~E~~~~l~ 141 (220)
...+..+=+. .|...-|..-...|-.+=.
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI 202 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKI 202 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHHHH
Confidence 2233333333 7888888777776665433
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.34 E-value=5.5e-06 Score=55.07 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc-c----C-CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 36 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR-N----K-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~-~----~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+..+..+...|..+.+ +.+++++.||+.++.. + . ...+..+++++..+|.|+||.|+|.||+..+..+.
T Consensus 4 E~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 4 EHSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4567888999999986 4679999999988833 1 1 22455789999999999999999999999987654
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.29 E-value=4.3e-06 Score=55.79 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc-cCCC-C----hHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 36 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR-NKNK-K----NLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~-~~~~-~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
+.-+..+...|..++..-..+|.|+..||..++.. .+.. . ...+..++..+|.+++|.|+|++|+..+...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45678888899998854112689999999988853 2211 2 5678889999999999999999998877644
No 67
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.26 E-value=2.2e-05 Score=55.67 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHHhhhcCCCCC
Q 027657 75 KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLR--QTGFIEREELKEMVLALLHESDLILS 152 (220)
Q Consensus 75 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d--~~G~I~~~E~~~~l~~~~~~~~~~~~ 152 (220)
+...++++|..||..+||+|++.+.-..+..+. ..+...++.+....++++ +--.|+.++|..+++++-+. ....+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn-k~q~t 86 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN-KDQGT 86 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc-cccCc
Confidence 345679999999999999999999999888777 678889999999999887 45689999999999988333 22233
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 153 DDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 153 ~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
-++.-+-+ +.+|..++|.|...|++.++..
T Consensus 87 ~edfvegL----rvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 87 YEDFVEGL----RVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHH----HhhcccCCcceeHHHHHHHHHH
Confidence 33333333 7899999999999999999876
No 68
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.9e-05 Score=65.99 Aligned_cols=132 Identities=19% Similarity=0.306 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCCCCcccHHHHHHHHhc------cCC--------CC--h--HHHHHHHHHhcCCCCceeehHHHHHH
Q 027657 41 ALYELFKKLSSSIFDDGIIHKEEFQLALFR------NKN--------KK--N--LFADRIFDLFDLKRNGVIEFGEFVRS 102 (220)
Q Consensus 41 ~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~------~~~--------~~--~--~~~~~l~~~~d~~~~g~i~~~ef~~~ 102 (220)
.+.-+|..+|.| ++|-|+.+||...... .+. .. . ..-.-.-..|..++++++++++|+.+
T Consensus 234 ~F~IAFKMFD~d--gnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 234 NFRIAFKMFDLD--GNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cceeeeeeeecC--CCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 345568888999 9999999999865411 111 00 0 01112344568899999999999999
Q ss_pred HhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHH
Q 027657 103 LGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 182 (220)
Q Consensus 103 ~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~ 182 (220)
+..+. ++-++.-|..+|+..+|.|+..+|...|... .+.+ -+....+++..-..++.+ +..||++||..
T Consensus 312 ~e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~---a~~n--~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~ 380 (489)
T KOG2643|consen 312 QENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAY---AGVN--SKKKHKYLKRVKEKFKDD-GKGISLQEFKA 380 (489)
T ss_pred HHHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHH---cccc--hHhHHHHHHHHHHhccCC-CCCcCHHHHHH
Confidence 86544 5667888999999999999999999988654 1222 223333455555666555 55699999988
Q ss_pred HHH
Q 027657 183 FVK 185 (220)
Q Consensus 183 ~l~ 185 (220)
+..
T Consensus 381 Ff~ 383 (489)
T KOG2643|consen 381 FFR 383 (489)
T ss_pred HHH
Confidence 654
No 69
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.21 E-value=1.5e-05 Score=57.50 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 027657 78 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 157 (220)
Q Consensus 78 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~ 157 (220)
+.++.|..+|.|+||.|+-+++...++.+.. ..+++++..+++- ..|.|+..-|..++.. .++-..-+
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~elDaM~~E----a~gPINft~FLTmfGe-------kL~gtdpe 100 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEELDAMMKE----APGPINFTVFLTMFGE-------KLNGTDPE 100 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHh----CCCCeeHHHHHHHHHH-------HhcCCCHH
Confidence 4578899999999999999999999988774 4677778877764 4789999888887743 33333335
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 158 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 158 ~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+.|..+|..+|.++.|.|.-+.++.+|..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHH
Confidence 56888999999999999999999999987
No 70
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.15 E-value=1.8e-05 Score=66.84 Aligned_cols=71 Identities=34% Similarity=0.476 Sum_probs=55.1
Q ss_pred ehHHHHHH-HhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCC
Q 027657 95 EFGEFVRS-LGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDG 173 (220)
Q Consensus 95 ~~~ef~~~-~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg 173 (220)
.++.++.. +.........+..++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|+||
T Consensus 314 ~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG 372 (391)
T PRK12309 314 TLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDG 372 (391)
T ss_pred HHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCC
Confidence 34444442 222444566788899999999999999999999932 24567899999999
Q ss_pred CcCHHHHHHHHHh
Q 027657 174 KIDPEEWKEFVKK 186 (220)
Q Consensus 174 ~Is~~ef~~~l~~ 186 (220)
.|+++||...+..
T Consensus 373 ~Is~eEf~~~~~~ 385 (391)
T PRK12309 373 KITPEEMRAGLGA 385 (391)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998875
No 71
>PF14658 EF-hand_9: EF-hand domain
Probab=98.15 E-value=1.5e-05 Score=49.53 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCC-CcccHHHHHHHHH
Q 027657 83 FDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQT-GFIEREELKEMVL 141 (220)
Q Consensus 83 ~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~-G~I~~~E~~~~l~ 141 (220)
|..+|.++.|.|...+++.++.......+.+.++..+.+.+|+++. |.|+.+.|..+|+
T Consensus 4 F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 4 FDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred hhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4444444444444444444444444323444444444444554444 4455554444443
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.13 E-value=1.1e-05 Score=55.44 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhh
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 105 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 105 (220)
++++|.......|..++. ++|.|+.++...++...++. ...+..+|...|.+++|.++++||+.++.-
T Consensus 4 ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~-~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLP-RDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSS-HHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCC-HHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 678899999999999985 68999999999988777644 456799999999999999999999998754
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.12 E-value=3.6e-06 Score=44.58 Aligned_cols=27 Identities=33% Similarity=0.684 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH
Q 027657 115 KIAFAFRLYDLRQTGFIEREELKEMVL 141 (220)
Q Consensus 115 ~~~~~F~~~D~d~~G~I~~~E~~~~l~ 141 (220)
+++.+|+.||.|++|+|+.+||.++|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 74
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.08 E-value=4.2e-05 Score=64.94 Aligned_cols=122 Identities=22% Similarity=0.341 Sum_probs=86.0
Q ss_pred cCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC-------------------
Q 027657 50 SSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA------------------- 110 (220)
Q Consensus 50 d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~------------------- 110 (220)
|.. +||.|+.+||+ ++....+.+.......|+.+|+.++|.++++++...+.....+.
T Consensus 84 D~t--KDglisf~eF~-afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~ 160 (694)
T KOG0751|consen 84 DQT--KDGLISFQEFR-AFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR 160 (694)
T ss_pred hhc--ccccccHHHHH-HHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH
Confidence 445 88999999999 77665567777789999999999999999999998876432110
Q ss_pred ---------------cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCc
Q 027657 111 ---------------LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKI 175 (220)
Q Consensus 111 ---------------~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~I 175 (220)
...+..+++|+..|+.++|.|+.=+|+..+..+ ..++....++..+- .....+...++
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~----~~h~lt~~v~~nlv---~vagg~~~H~v 233 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI----RIHLLTPFVEENLV---SVAGGNDSHQV 233 (694)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhh----hhhcCCHHHhhhhh---hhcCCCCcccc
Confidence 113456789999999999999999999998776 44444333333321 22333333456
Q ss_pred CHHHHH
Q 027657 176 DPEEWK 181 (220)
Q Consensus 176 s~~ef~ 181 (220)
|+..|.
T Consensus 234 Sf~yf~ 239 (694)
T KOG0751|consen 234 SFSYFN 239 (694)
T ss_pred chHHHH
Confidence 655554
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.06 E-value=9.8e-06 Score=42.12 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCCceeehHHHHHHHh
Q 027657 79 ADRIFDLFDLKRNGVIEFGEFVRSLG 104 (220)
Q Consensus 79 ~~~l~~~~d~~~~g~i~~~ef~~~~~ 104 (220)
++.+|+.+|.|++|.|+++||+.++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45667777777777777777776664
No 76
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.02 E-value=2.1e-05 Score=59.18 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 114 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 114 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..+..+|+.||.+.||+|+.-|++.+|..+ |.+-+---+ +.+....|.|.||+||+-+|.=+.+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL----gapQTHL~l----K~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL----GAPQTHLGL----KNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh----CCchhhHHH----HHHHHHhhcccccchhHHHHHHHHHH
Confidence 457889999999999999999999999887 655444344 44448899999999999999877765
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.00 E-value=7.4e-05 Score=49.70 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 114 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 114 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
..+..+|..|. .+.|.++..||+.+|.+-+.. ....-.+.. +..++...|.|+||.|+|+||..++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~----vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMA----VDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHH----HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44677899998 446799999999999754332 122223433 5566689999999999999999988653
No 78
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.99 E-value=3.3e-05 Score=55.22 Aligned_cols=98 Identities=16% Similarity=0.331 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC--CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHH
Q 027657 40 EALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIA 117 (220)
Q Consensus 40 ~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 117 (220)
+++-++|. .+ |.|.++..+|.+++.-.. .+....+.-.|..+|-|+++.|.-.++...+..+.+.....+++.
T Consensus 74 ~ri~e~FS---eD--G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~ 148 (189)
T KOG0038|consen 74 RRICEVFS---ED--GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVE 148 (189)
T ss_pred HHHHHHhc---cC--CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHH
Confidence 44555554 44 999999999999884332 123334455678899999999999999999988877776666654
Q ss_pred H----HHHhcCCCCCCcccHHHHHHHHHH
Q 027657 118 F----AFRLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 118 ~----~F~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
. +...-|.||+|.|+..||.+++..
T Consensus 149 ~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 149 LICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 4 455569999999999999998854
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.96 E-value=1e-05 Score=40.50 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEM 139 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~ 139 (220)
++.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 355778888888888888888765
No 80
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.86 E-value=0.00051 Score=61.40 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCc
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHAL 111 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 111 (220)
....+....+...|+..|++ .+|.++..+...++...... ....+..+|...+..+++++...+|..+.......
T Consensus 129 ~~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-- 204 (746)
T KOG0169|consen 129 RQRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-- 204 (746)
T ss_pred hhcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--
Confidence 36667788899999999999 99999999999888665533 44567889999988899999999999988776632
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+ ++..+|..+-.+ .++++.+++..++... +...+.+.+.++++++.+-..-.....+.++.+.|.++|..
T Consensus 205 p--ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 205 P--EVYFLFVQYSHG-KEYLSTDDLLRFLEEE--QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred c--hHHHHHHHHhCC-CCccCHHHHHHHHHHh--cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 2 788888888655 8999999999999876 22356778888888865533333445577999999999976
No 81
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.82 E-value=9.9e-05 Score=57.38 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCC--CChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCC---CCcH-
Q 027657 39 VEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN--KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP---HALV- 112 (220)
Q Consensus 39 i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~- 112 (220)
++.++...-+.|+.+ .+-.++..+|..+|...-+ .....+..+...+|.|++..++..+|+........ ....
T Consensus 197 lenlkdRwyqaDspp-adlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdid 275 (362)
T KOG4251|consen 197 LENLKDRWYQADSPP-ADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDID 275 (362)
T ss_pred HHhhhhhhccccCch-hhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchH
Confidence 344444444444421 3556777999977733221 23446789999999999999999999987543221 1111
Q ss_pred ----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHH
Q 027657 113 ----EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 182 (220)
Q Consensus 113 ----~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~ 182 (220)
+.+.+..=..+|.|++|.++.+|+..++..+ +....-.++ +.+....|.|++..++.++..+
T Consensus 276 dnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~----n~~~alne~----~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 276 DNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ----NFRLALNEV----NDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCch----hhhhhHHHH----HHHHhhhccCCCcccCHHHHHH
Confidence 2233344457899999999999999986433 333333333 4444778999999999999875
No 82
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00017 Score=49.51 Aligned_cols=72 Identities=26% Similarity=0.368 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhh--h----cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHH
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLH--E----SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEF 183 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~--~----~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~ 183 (220)
+++.---.|++.|.|++|.|+--|+..++...-. . +.+-.++.+++.+|..+.+.-|.|+||.|+|-||.+.
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3343445699999999999999999999987744 1 2234567899999999999999999999999999864
No 83
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.73 E-value=0.00012 Score=62.54 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCC----hHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 32 CSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKK----NLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 32 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
.++|+++++.+.+.|...| + ++|+++..++..++.+.+... ..+++.+....+.|.+|.|+|++|+.++....
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 3499999999999999999 7 999999999999997655443 56788999999999999999999999765443
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.69 E-value=0.00013 Score=61.78 Aligned_cols=54 Identities=31% Similarity=0.435 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 027657 76 NLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 143 (220)
Q Consensus 76 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 143 (220)
...+..+|..+|.+++|.|+.+||.. +..+|..+|.|++|.|+.+||.+++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 44578899999999999999999952 4678999999999999999999998765
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.59 E-value=6.6e-05 Score=37.53 Aligned_cols=24 Identities=46% Similarity=0.794 Sum_probs=21.2
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHH
Q 027657 161 DKSFSDADTNGDGKIDPEEWKEFV 184 (220)
Q Consensus 161 ~~~f~~~d~~~dg~Is~~ef~~~l 184 (220)
+.+|..+|.|+||.|+.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457799999999999999999864
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0015 Score=58.49 Aligned_cols=139 Identities=17% Similarity=0.274 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC----C-
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH----P- 108 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~----~- 108 (220)
.|.++-..-...|..+-+ +.|+|+...-+.++...+++ .+.+..+|...|.|.||+++..||..++.... +
T Consensus 10 vT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP-~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLP-TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred cchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCC-hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 567777777788888866 79999999999888777644 45678999999999999999999988765211 0
Q ss_pred ----------------------C----C----------------------------------------------------
Q 027657 109 ----------------------H----A---------------------------------------------------- 110 (220)
Q Consensus 109 ----------------------~----~---------------------------------------------------- 110 (220)
. +
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence 0 0
Q ss_pred --------------------------cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 027657 111 --------------------------LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSF 164 (220)
Q Consensus 111 --------------------------~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f 164 (220)
...-+.+..|+.+|+..+|+++-..-+.+|.. ..++...+ ..++
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q------S~Lpq~~L----A~IW 235 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ------SGLPQNQL----AHIW 235 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHh------cCCchhhH----hhhe
Confidence 11234688999999999999999999988853 34444443 4455
Q ss_pred hhcCCCCCCCcCHHHHHHHHHh
Q 027657 165 SDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 165 ~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..-|.|+||+++-+||+=.|.-
T Consensus 236 ~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 236 TLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred eeeccCCCCcccHHHHHHHHHH
Confidence 7889999999999999866543
No 87
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.41 E-value=0.00027 Score=37.20 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCCCCCCcccHHHHHHHHh
Q 027657 42 LYELFKKLSSSIFDDGIIHKEEFQLALF 69 (220)
Q Consensus 42 l~~~F~~~d~~~~~~g~i~~~e~~~~l~ 69 (220)
+..+|..+|.+ ++|+|+.+||..+|.
T Consensus 2 l~~~F~~~D~d--~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD--GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT--SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC--CCCcCcHHHHHHHHH
Confidence 45666667776 777777777776664
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.40 E-value=0.00013 Score=50.92 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 027657 76 NLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKE 138 (220)
Q Consensus 76 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~ 138 (220)
...+.-.|..+|.|++|.++-.|+..+...+. ..+.-++..|+..|.|++|.|+..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33455566667777777777777666554332 2223355566667777777777776653
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.37 E-value=9.1e-05 Score=51.72 Aligned_cols=63 Identities=27% Similarity=0.476 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHH
Q 027657 110 ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 182 (220)
Q Consensus 110 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~ 182 (220)
......+.+.|..+|.|++|.|+..|+..+...+ ...+. .++.++...|.|+||.||..||..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-------~~~e~---C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-------MPPEH---CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-------STTGG---GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-------hhhHH---HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456778999999999999999999998875321 22222 256677899999999999999975
No 90
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.33 E-value=0.00046 Score=65.58 Aligned_cols=69 Identities=17% Similarity=0.381 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCC--HH-HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 114 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILS--DD-VIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 114 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
.++..+|+.||++.+|.++..+|+.+|+++ |+.++ ++ +-+.-++.+....|++.+|.|+..+|.++|..
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl----gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL----GYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc----CCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 457789999999999999999999999988 77663 11 00112444558999999999999999999976
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.31 E-value=0.0013 Score=38.56 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=18.9
Q ss_pred ccHHHHHHHHhccCCC-ChHHHHHHHHHhcCCCCceeehHHHHHHH
Q 027657 59 IHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSL 103 (220)
Q Consensus 59 i~~~e~~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 103 (220)
++..|++.+|...... ...++..+|+..|.+++|++..+||..++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 3444444444433322 23344445555555445555544444443
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.30 E-value=0.0012 Score=45.23 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhCh
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 188 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~ 188 (220)
.....+..+|+..+. ++|.|+.++.+.++... .++.+.+ .+++...|.+++|.++.+||.-+|.-..
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S------~L~~~~L----~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS------GLPRDVL----AQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT------TSSHHHH----HHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc------CCCHHHH----HHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 445678889999985 58999999999988643 5565544 5556899999999999999998776543
No 93
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.27 E-value=0.0012 Score=55.54 Aligned_cols=65 Identities=26% Similarity=0.409 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCCceeehHHHHHHHhhhCC---CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 027657 79 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHP---HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 143 (220)
Q Consensus 79 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 143 (220)
+..+|..+|.|++|.|+.+||..+|..+.. .......+..+-+.+|.|+||.|+..||..++.-.
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 578999999999999999999999876542 34456778888999999999999999999987643
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.18 E-value=0.0022 Score=37.63 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=38.7
Q ss_pred eeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 027657 93 VIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 143 (220)
Q Consensus 93 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 143 (220)
+++|.|....+..+- -.-.+.-+..+|+..|++++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 468889888887655 45677888999999999999999999999988754
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.11 E-value=0.0032 Score=53.42 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCCCCCcccHHHHHHHH-----hccC----CCC------hH---HHHHHHHHhcCCCCceeehHHHHHH
Q 027657 41 ALYELFKKLSSSIFDDGIIHKEEFQLAL-----FRNK----NKK------NL---FADRIFDLFDLKRNGVIEFGEFVRS 102 (220)
Q Consensus 41 ~l~~~F~~~d~~~~~~g~i~~~e~~~~l-----~~~~----~~~------~~---~~~~l~~~~d~~~~g~i~~~ef~~~ 102 (220)
.+++.|--+++. ++|.|+..++.... ..+. .+. -. .+-..|..+|.|.+|.|+-++...+
T Consensus 226 vi~rIFy~~nrs--~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 226 VIQRIFYYLNRS--RTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HhhhhheeeCCc--cCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 445566677888 99999999977643 1110 000 00 1122367789999999999998877
Q ss_pred HhhhCCCCcHHHHHHHHHH----hcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHH
Q 027657 103 LGVFHPHALVEDKIAFAFR----LYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPE 178 (220)
Q Consensus 103 ~~~~~~~~~~~~~~~~~F~----~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ 178 (220)
-.. .....-+.++|. .+-.-.+|.|+.++|..++.++ ...-++.. +...|+.+|.+++|.|+..
T Consensus 304 ~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~----e~k~t~~S----leYwFrclDld~~G~Lt~~ 371 (493)
T KOG2562|consen 304 GDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE----EDKDTPAS----LEYWFRCLDLDGDGILTLN 371 (493)
T ss_pred hcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh----ccCCCccc----hhhheeeeeccCCCcccHH
Confidence 643 334566788888 4455678999999999999876 33333332 5677899999999999999
Q ss_pred HHHHHHHhC
Q 027657 179 EWKEFVKKN 187 (220)
Q Consensus 179 ef~~~l~~~ 187 (220)
|..-+....
T Consensus 372 el~~fyeeq 380 (493)
T KOG2562|consen 372 ELRYFYEEQ 380 (493)
T ss_pred HHHHHHHHH
Confidence 988776553
No 96
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.03 E-value=0.003 Score=55.62 Aligned_cols=112 Identities=22% Similarity=0.365 Sum_probs=83.1
Q ss_pred cchHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCC--CCC---------cccHHHHHHHHhccCC--CChHHHHH
Q 027657 16 EEPTVLAAETPCQSSSCSFTVCEVEALYELFKKLSS-SIF--DDG---------IIHKEEFQLALFRNKN--KKNLFADR 81 (220)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~-~~~--~~g---------~i~~~e~~~~l~~~~~--~~~~~~~~ 81 (220)
..++.+.+.+. |+.+++..++.+|..-=. +.. +.. +++...|...+..+.. .....+.+
T Consensus 487 t~lrs~~~~~~-------lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~r 559 (671)
T KOG4347|consen 487 TILRSVVQTTS-------LTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLER 559 (671)
T ss_pred HHHHhhcccCc-------cCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHH
Confidence 45777777888 999999999999987411 100 111 2333334433322221 12346789
Q ss_pred HHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHH
Q 027657 82 IFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREEL 136 (220)
Q Consensus 82 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~ 136 (220)
+|..+|.+++|.++|.+++..+..++ .....+.+..+|+++|++++ ..+.+|.
T Consensus 560 lF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 560 LFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999999999999888 57788899999999999999 9999888
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.95 E-value=0.0035 Score=41.06 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhC
Q 027657 115 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 115 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~ 187 (220)
++..+|+.|.. +.+.|+.++|..+|..- +.....+.+.+..++...-........+.+|+++|.++|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~e--Q~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREE--QGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHT--SS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHH--hccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46788999965 78999999999999753 112246788888888654333322346899999999999764
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.86 E-value=0.0013 Score=32.84 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVL 141 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~ 141 (220)
++.+|+.+|.+++|.|+..||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 46678888888888888888877764
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.86 E-value=0.0047 Score=53.18 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 114 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 114 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
..++..|...| +++|+|+..|+..++... +... ...+++.++.+....+.|.+|.|++++|+.++.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~----~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA----KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh----cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45778899999 999999999999999876 3333 3344455666668999999999999999996654
No 100
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.62 E-value=0.017 Score=38.43 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh---cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChh
Q 027657 113 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE---SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 189 (220)
Q Consensus 113 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~---~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~ 189 (220)
.++++.+|+++ .|++|.++...|..+|..++.- .|+..+---++..++.+|.... ....|+.++|..|++..|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCCC
Confidence 46789999999 6889999999999998876543 2322222237777888888862 4467999999999999887
Q ss_pred hhhhc
Q 027657 190 LIKNM 194 (220)
Q Consensus 190 ~~~~~ 194 (220)
.+-++
T Consensus 79 ~lVWL 83 (90)
T PF09069_consen 79 SLVWL 83 (90)
T ss_dssp TTTHH
T ss_pred eeeHH
Confidence 65443
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.33 E-value=0.0065 Score=30.13 Aligned_cols=26 Identities=46% Similarity=0.764 Sum_probs=22.6
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 161 DKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 161 ~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+.+|..+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45678999999999999999998864
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=96.23 E-value=0.059 Score=48.20 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=74.6
Q ss_pred CCceeehHHHHHHHhhhC-CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcC
Q 027657 90 RNGVIEFGEFVRSLGVFH-PHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDAD 168 (220)
Q Consensus 90 ~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d 168 (220)
+.|.++|.+|..+...+. +...+..++..+|..+-.+ .+.|+.++|..+|... +.....+.+.+..++..++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~--Q~e~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLH--QDELDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHh--CCCcCCCHHHHHHHHHHHHhhcc
Confidence 357999999988877654 2334678899999999654 4789999999999865 11123566777777765544322
Q ss_pred ---CCCCCCcCHHHHHHHHHhChhhhhhcCCccchhccccCCcc
Q 027657 169 ---TNGDGKIDPEEWKEFVKKNPSLIKNMTLPYLKDITLAFPSF 209 (220)
Q Consensus 169 ---~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (220)
....+.++++.|..++... ++..........||+.-...|
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~s~-~~~~p~~~~v~qdm~~Pls~Y 132 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLLYD-DLNGPITPQVHHDMTAPLSHY 132 (599)
T ss_pred ccccccccCcCHHHHHHHHcCc-cccccccccccccCCCchhhh
Confidence 1223469999999999854 222212222234555544444
No 103
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.044 Score=37.81 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc-----------cCCCChHH----HHHHHHHhcCCCCceee
Q 027657 31 SCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR-----------NKNKKNLF----ADRIFDLFDLKRNGVIE 95 (220)
Q Consensus 31 ~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~-----------~~~~~~~~----~~~l~~~~d~~~~g~i~ 95 (220)
...+|+++++--+ |...|-+ +++.++--|+..++.. .+...+.+ +..++..-|.|++|.|+
T Consensus 60 ~a~mtpeqlqfHY--F~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~ID 135 (144)
T KOG4065|consen 60 VAKMTPEQLQFHY--FSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVID 135 (144)
T ss_pred hhhCCHHHHhhhh--hhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceee
Confidence 4458888887544 7777777 8899999998888732 11122222 34445555778888888
Q ss_pred hHHHHHH
Q 027657 96 FGEFVRS 102 (220)
Q Consensus 96 ~~ef~~~ 102 (220)
|.||+..
T Consensus 136 YgEflK~ 142 (144)
T KOG4065|consen 136 YGEFLKR 142 (144)
T ss_pred HHHHHhh
Confidence 8888753
No 104
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.71 E-value=0.067 Score=49.45 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChH------HHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNL------FADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~------~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
..++..+..+...|+..+.. ..|.++.+++..+|..++-.... .+..+....|.+..|.+++.+|...+...
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred chhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 36678889999999999988 89999999999999887744322 23444445567777999999999999887
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 027657 107 HPHALVEDKIAFAFRLYDLRQTGFIEREELKE 138 (220)
Q Consensus 107 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~ 138 (220)
........++..+|+.+-++.. +|..+|+..
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7677888899999999977665 788888887
No 105
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.13 E-value=0.017 Score=47.10 Aligned_cols=68 Identities=26% Similarity=0.333 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChh
Q 027657 115 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 189 (220)
Q Consensus 115 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~ 189 (220)
-+.+-|..+|+|+++.|...|++.+=.-+. .........+.+|...|.|+|..||++||+..|...+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~-------k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLL-------KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHH-------hhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 567889999999999999999877644331 12234455778889999999999999999999876544
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.86 E-value=0.071 Score=34.76 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCCCceeehHHHHHHHhhhCCC-CcHHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 027657 79 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH-ALVEDKIAFAFRLYDLR----QTGFIEREELKEMVL 141 (220)
Q Consensus 79 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~F~~~D~d----~~G~I~~~E~~~~l~ 141 (220)
+..+|..+.. +.+.++.++|..++....+. ......+..++..|.++ ..+.++.++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4566667654 56667777777777654433 23466677777777544 367888888888874
No 107
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.38 E-value=0.41 Score=42.38 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=96.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc-cCCC--C--hHHHHHHHHHhcCCC--CceeehHHHH
Q 027657 28 QSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR-NKNK--K--NLFADRIFDLFDLKR--NGVIEFGEFV 100 (220)
Q Consensus 28 ~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~-~~~~--~--~~~~~~l~~~~d~~~--~g~i~~~ef~ 100 (220)
+...+.+.+.-++.+.++|...|.| .+|.++-.|+...=.. .+.+ + ...++...+..-++| +..++..-|+
T Consensus 183 da~~qelkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFL 260 (625)
T KOG1707|consen 183 DAEEQELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFL 260 (625)
T ss_pred ccccccccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchH
Confidence 3445568889999999999999999 9999999998743211 2211 1 123444444444433 4557777888
Q ss_pred HHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHhhcCCCCCCCcCHH
Q 027657 101 RSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD--LILSDDVIETIVDKSFSDADTNGDGKIDPE 178 (220)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~--~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ 178 (220)
-....+. ....++....+.+.|--+.+=.++.+=+...+. ...+ .++++ ..-..+..+|..+|.|+||.++-.
T Consensus 261 fL~~lfi-ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~---~~p~~s~ELs~-~~~~Fl~~~f~~~D~d~Dg~L~p~ 335 (625)
T KOG1707|consen 261 FLNTLFI-ERGRHETTWTILRKFGYTDSLELTDEYLPPRLK---VPPDQSVELSP-KGYRFLVDVFEKFDRDNDGALSPE 335 (625)
T ss_pred HHHHHHH-HhccccchhhhhhhcCCcchhhhhhhhcCcccc---CCCCcceeccH-HHHHHHHHHHHhccCCCCCCcCHH
Confidence 7766555 334445555666776433322222221111110 0011 22333 333567888999999999999999
Q ss_pred HHHHHHHhChhhh
Q 027657 179 EWKEFVKKNPSLI 191 (220)
Q Consensus 179 ef~~~l~~~~~~~ 191 (220)
|+..+....|..-
T Consensus 336 El~~LF~~~P~~p 348 (625)
T KOG1707|consen 336 ELKDLFSTAPGSP 348 (625)
T ss_pred HHHHHhhhCCCCC
Confidence 9999888776654
No 108
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.03 E-value=0.49 Score=33.67 Aligned_cols=100 Identities=14% Similarity=0.254 Sum_probs=50.8
Q ss_pred chHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeeh
Q 027657 17 EPTVLAAETPCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEF 96 (220)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~ 96 (220)
.++.+++... +..=++..+.++|....-+...+..++..++..+| ..+|........+.++.
T Consensus 25 KLR~lQk~~~-------l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-----------~~iy~~l~~~~p~~~~i 86 (127)
T PF09068_consen 25 KLRFLQKRLC-------LDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL-----------SSIYEFLNKRLPTLHQI 86 (127)
T ss_dssp HHHHHHHHTT-------GGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH-----------HHHHHHHHHHSTTS--H
T ss_pred HHHHHHHHHh-------heeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH-----------HHHHHHHHHHCCCCCCC
Confidence 3566777776 76777777788887775542224567777777665 23332222211111211
Q ss_pred HHH-HHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 027657 97 GEF-VRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 97 ~ef-~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
.-. +. ...+--+.+++..||++++|.|+.-.|+..+..
T Consensus 87 ~~~~v~--------~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 87 PSRPVD--------LAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp H-------------HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred CchhHH--------HHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 100 00 111222677888888888888888888877653
No 109
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.68 E-value=0.18 Score=45.90 Aligned_cols=95 Identities=23% Similarity=0.381 Sum_probs=77.5
Q ss_pred CceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCC
Q 027657 91 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTN 170 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~ 170 (220)
++ ++++|+. ....+.+..++..|.++|. ++|.++.+++..++...+..............+...++...|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8899998 3367888999999999998 89999999999998877555444455667777788888999999
Q ss_pred CCCCcCHHHHHHHHHhChhhhhh
Q 027657 171 GDGKIDPEEWKEFVKKNPSLIKN 193 (220)
Q Consensus 171 ~dg~Is~~ef~~~l~~~~~~~~~ 193 (220)
+.|.+.++++...+...+....+
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~ 96 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFA 96 (646)
T ss_pred ccceeeecchhHHHHhchHHHHH
Confidence 99999999999999887755544
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=0.23 Score=42.93 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
++++++-++....|+..-+| ..|+|+-.--+.++.+..+ +-.++.-+|++.|.+.||.+++.||+.+++..
T Consensus 224 ~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSkl-pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSKL-PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhccC-chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 58899999999999999888 8999999888888765543 33456889999999999999999999998754
No 111
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.51 E-value=0.25 Score=40.49 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCC--CChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHH
Q 027657 38 EVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN--KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDK 115 (220)
Q Consensus 38 ~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 115 (220)
.-..+...|..+|.+ ++|.++..+-...+.-+.. .....++-.|..++..-||.++-.+|-.++.... .-..-.
T Consensus 257 vsd~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~ 332 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLR 332 (412)
T ss_pred hhhhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceee
Confidence 336677889999998 9999998887766643332 2455678889999999999999877766654433 233444
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVL 141 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~ 141 (220)
+--.|+.++...+|.|+.++|+.+..
T Consensus 333 v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 333 VPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred ccccchhhhcccCcceeHHHHHHHHH
Confidence 66789999999999999999999874
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.00 E-value=0.21 Score=41.18 Aligned_cols=62 Identities=26% Similarity=0.472 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 113 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 113 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
...+-++|..+|.|.+|.++..|++.+-.. -. +..|+.+|...|...||.|+-.||...+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld--------kn----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD--------KN----EACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc--------Cc----hhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 456778888888888888888887765311 11 123566667778777888888888776644
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=0.16 Score=46.15 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhh
Q 027657 36 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 105 (220)
Q Consensus 36 ~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 105 (220)
...-.....+|+.+|+. .+|+++...-+.+|...+++. ..+..+|..-|.|+||+++-+||+.++..
T Consensus 191 ~~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq-~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQ-NQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred chhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCCch-hhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34556677899999999 999999999999987766543 34678999999999999999999988753
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.69 E-value=1.1 Score=40.86 Aligned_cols=67 Identities=30% Similarity=0.375 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 027657 76 NLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 143 (220)
Q Consensus 76 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 143 (220)
...+..+|..+|.+.+|.+++.+-..++..+. ....+..++..|+..+..++|.+...++..+....
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 33568899999999999999999999887666 45667788899998898899999999999987655
No 115
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=0.15 Score=47.83 Aligned_cols=139 Identities=21% Similarity=0.333 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCC--C--
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP--H-- 109 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~--~-- 109 (220)
+++.+.......|+.+.+ ++|.++....+.+|....+. .....++|...|.+.+|.+++.||..++..... .
T Consensus 123 ~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~Lp-~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~ 198 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSKLP-SDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGN 198 (847)
T ss_pred CCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCCCC-hhhhccccccccccccCCCChhhhhhhhhHHHHHhhcc
Confidence 778888888888999988 69999999999888665433 334578899999999999999999887653210 0
Q ss_pred --------------------------------------------------------------------------------
Q 027657 110 -------------------------------------------------------------------------------- 109 (220)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (220)
T Consensus 199 ~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vs 278 (847)
T KOG0998|consen 199 SEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVS 278 (847)
T ss_pred cCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccC
Confidence
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 110 ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 110 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
......+..+|...|.+++|.|+..+....+.. ..++...+ ..++...|..+.|.|++++|.-.+..
T Consensus 279 p~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~------~gl~~~~l----~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP------FGLSKPRL----AHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred hHHHHHHHHHHHhccccCCCccccccccccccc------CCCChhhh----hhhhhhcchhccCcccccccchhhhh
Confidence 012345667899999999999999998888753 34444444 44447889999999999988765543
No 116
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.56 E-value=0.63 Score=41.12 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccC-CCChHHHHHHHHHhcCCCCceeehHHHHHHH
Q 027657 25 TPCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSL 103 (220)
Q Consensus 25 ~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 103 (220)
+....+.-.+++++++..+..|..+|.+ +.|+++..++...|.... ..+.....++.+..+.+-.|.+...||...+
T Consensus 578 ~~~~~~~i~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 578 TSQMSIPIKLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred ccccccccccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 3345666679999999999999999999 999999999999997666 3456677889999999989999999999988
Q ss_pred hhhCCC
Q 027657 104 GVFHPH 109 (220)
Q Consensus 104 ~~~~~~ 109 (220)
......
T Consensus 656 s~~~~g 661 (680)
T KOG0042|consen 656 SAIKNG 661 (680)
T ss_pred HHHhcC
Confidence 876643
No 117
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.41 E-value=0.27 Score=40.53 Aligned_cols=102 Identities=17% Similarity=0.039 Sum_probs=72.7
Q ss_pred CCHHHHHH----HHHHHHHHcCCCCCCCcccHHHHHHHHhcc----CCCChHHHHHHHHHhcCCCCceeehHHHHHHHhh
Q 027657 34 FTVCEVEA----LYELFKKLSSSIFDDGIIHKEEFQLALFRN----KNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 105 (220)
Q Consensus 34 ~~~~~i~~----l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 105 (220)
.+..++++ |...|..+=.+ .++......+...-... ...-...+.-+|..+|.|.++.++..|+..+.
T Consensus 201 Ct~qeL~~lg~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~-- 276 (434)
T KOG3555|consen 201 CTDQELRRLGNRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE-- 276 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh--
Confidence 67777764 56667776544 55555554444332111 11123346779999999999999999998766
Q ss_pred hCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 027657 106 FHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 106 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
....+.-++-.|...|...+|.|+-.|+...+..
T Consensus 277 ---ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 277 ---LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred ---ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3455677889999999999999999999998864
No 118
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.36 E-value=0.45 Score=38.74 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=59.4
Q ss_pred hHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCC-HHHHH-------HHHHHHHhhc
Q 027657 96 FGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILS-DDVIE-------TIVDKSFSDA 167 (220)
Q Consensus 96 ~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~-~~~~~-------~~~~~~f~~~ 167 (220)
-.++...|...-......-.-+..|.+.|.|++|.++-.|+..++..-+.+...+-+ +.+.. .+-..++..+
T Consensus 226 kdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~v 305 (442)
T KOG3866|consen 226 KDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQV 305 (442)
T ss_pred HHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 345555554433222223334668999999999999999999998866555322222 11111 2234456789
Q ss_pred CCCCCCCcCHHHHHHHHHh
Q 027657 168 DTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 168 d~~~dg~Is~~ef~~~l~~ 186 (220)
|.|.|.-||.+||.+.-.+
T Consensus 306 DtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 306 DTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred ccchhhhhhHHHHHhhhhh
Confidence 9999999999999987655
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.03 E-value=0.12 Score=42.29 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 027657 79 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 143 (220)
Q Consensus 79 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 143 (220)
+.-.|..+|.|.++.|+..||..+-..+........-.+.+|+..|.|+|-.|++.|++..|...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 44568889999999999888777655544344456667889999999999999999999998653
No 120
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.50 E-value=2.4 Score=31.74 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=19.1
Q ss_pred HHcCCCCCCCcccHHHHHHHHhccCCC
Q 027657 48 KLSSSIFDDGIIHKEEFQLALFRNKNK 74 (220)
Q Consensus 48 ~~d~~~~~~g~i~~~e~~~~l~~~~~~ 74 (220)
=+|+| +||.|.+-|--..+..++..
T Consensus 15 FFDrd--~DGiI~P~dTy~GFraLGf~ 39 (174)
T PF05042_consen 15 FFDRD--KDGIIYPWDTYQGFRALGFG 39 (174)
T ss_pred eeCCC--CCeeECHHHHHHHHHHhCCC
Confidence 35888 99999999977777666543
No 121
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.25 E-value=0.58 Score=41.84 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=53.3
Q ss_pred eehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCC
Q 027657 94 IEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDG 173 (220)
Q Consensus 94 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg 173 (220)
|++..|...+...........-+.++|+.+|.+++|.|+..+|...|..+.. .++-+.++-+|..+|++++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-
Confidence 4455555555444433333455788999999999999999999999887622 1223445677888888877
Q ss_pred CcCHHHH
Q 027657 174 KIDPEEW 180 (220)
Q Consensus 174 ~Is~~ef 180 (220)
....++-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 6655554
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.71 E-value=1.5 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCC
Q 027657 159 IVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTL 196 (220)
Q Consensus 159 ~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~ 196 (220)
.++++|..++..+.+.+|+.|..+++..+......+++
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW 134 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW 134 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh
Confidence 35666688888777899999999999998777766554
No 123
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.41 E-value=0.5 Score=45.90 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=45.8
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHH
Q 027657 119 AFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 185 (220)
Q Consensus 119 ~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~ 185 (220)
-|+.||+||.|.|+..+|..++.. ..+.++.+++-++ .....|.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-----~k~ytqse~dfll----scae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-----HKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-----cccchhHHHHHHH----HhhccCccccccHHHHHHHhc
Confidence 478889999999999999999874 3556666666555 566677778899999998664
No 124
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.35 E-value=1.2 Score=41.64 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCH-HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhh
Q 027657 113 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSD-DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSL 190 (220)
Q Consensus 113 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~ 190 (220)
..+++..|+-+++...|.++.+++..++..+ |+...+ +....-+..+....|++.-|++++.+|...|.+....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl----g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSL----GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhc----CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 4678899999999999999999999999887 777664 4555555566677788888999999999999774433
No 125
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=89.06 E-value=2.9 Score=30.80 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC----ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 40 EALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK----KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 40 ~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
+.++..|..+.+. +...|+...|..++...+.- ....+.-+|..+-..+..+|+|++|+.++..+.
T Consensus 2 ~~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4455555555555 67789999999988654421 344677888887776777899999998886543
No 126
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.82 E-value=23 Score=33.48 Aligned_cols=126 Identities=14% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCCcccHHHHHHHHhccCCCChHHHHHHHHHhc--CCCCc-----eeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCC
Q 027657 55 DDGIIHKEEFQLALFRNKNKKNLFADRIFDLFD--LKRNG-----VIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQ 127 (220)
Q Consensus 55 ~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d--~~~~g-----~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 127 (220)
..|+|....+...+.... .+..+........ .+.+. ..+++.|..++..++. ..++..+|..+..++
T Consensus 161 ~~grip~knI~k~F~~~k--~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 161 FEGRIPVKNIIKTFSADK--KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccHHHHHHHhhcCC--chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHHhccCC
Confidence 678888887777663321 1222333333322 12222 2456677777776664 356899999999888
Q ss_pred CCcccHHHHHHHHHHHhhh------cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 128 TGFIEREELKEMVLALLHE------SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 128 ~G~I~~~E~~~~l~~~~~~------~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
.-+++.++|..+|..-=+. .-+...+..+..+|...--..+.-..|+++-+-|+++++.
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8999999999998753111 1133455666666632222223334689999999999987
No 127
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=87.00 E-value=17 Score=33.57 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=98.9
Q ss_pred hHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc--------cC--CCChH----HHHHHH
Q 027657 18 PTVLAAETPCQSSSCSFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR--------NK--NKKNL----FADRIF 83 (220)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~--------~~--~~~~~----~~~~l~ 83 (220)
+..+++... +..=.+.-+.++|+.++... +...++..+...+|.. .+ ...+. -+.-++
T Consensus 405 lr~LQK~l~-------ldlv~ltl~l~if~~h~l~~-~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~ll 476 (966)
T KOG4286|consen 405 LRRLQKALC-------LDLLSLSLALDALDQHNLKQ-NDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLL 476 (966)
T ss_pred HHHHHHHHH-------hccccHHHHHHHHHHhcccc-cCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHH
Confidence 444555554 44445566666777776441 3445555555444411 11 11111 124578
Q ss_pred HHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhh----------hcCCCCCH
Q 027657 84 DLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLH----------ESDLILSD 153 (220)
Q Consensus 84 ~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~----------~~~~~~~~ 153 (220)
..+|...+|.|..-+|...+..++ ....++.++.+|+.....+.-.+ ...|..+|..++. ..|.++.+
T Consensus 477 NvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep 554 (966)
T KOG4286|consen 477 NVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP 554 (966)
T ss_pred HhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh
Confidence 889999999999999999998888 46778899999999975544333 5555555443322 12344443
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhh
Q 027657 154 DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKN 193 (220)
Q Consensus 154 ~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~ 193 (220)
-++.+|.. .++--.|+...|..|+...|..+-+
T Consensus 555 -----svrsCF~~--v~~~pei~~~~f~dw~~~epqsmVw 587 (966)
T KOG4286|consen 555 -----SVRSCFQF--VNNKPEIEAALFLDWMRLEPQSMVW 587 (966)
T ss_pred -----HHHHHHHh--cCCCCcchHHHHHHHhccCcchhhH
Confidence 35677763 3444679999999999887766554
No 128
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=86.66 E-value=2.4 Score=35.11 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC---CCCHHH
Q 027657 79 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL---ILSDDV 155 (220)
Q Consensus 79 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~---~~~~~~ 155 (220)
..-++.++|..+.|+++.......++..+ .+.-.++++.+|.++. |++|.+..-.+-+++..++..+-. ..+..-
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~ 189 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGY 189 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcch
Confidence 34567778999999999988888888888 5777889999999996 567988888888888776554211 111111
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChh
Q 027657 156 IETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 189 (220)
Q Consensus 156 ~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~ 189 (220)
.+..++..|.. +.+++.+.|...+...|.
T Consensus 190 te~~a~~cf~q-----qrKv~Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 190 TELSARLCFLQ-----QRKVELNQFLDTLMSDPP 218 (434)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHhcCCC
Confidence 12334444433 357888899988877543
No 129
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=84.21 E-value=5.3 Score=26.95 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCC---CCceeehHHHHHHHhhhC
Q 027657 38 EVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLK---RNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 38 ~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~---~~g~i~~~ef~~~~~~~~ 107 (220)
....+...|+.+. .+|++++.+|..++... .....+.++|..+..- ....|+-+|+..+|..+.
T Consensus 28 ~W~~VE~RFd~La----~dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 28 GWKEVEKRFDKLA----KDGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----cCCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 4677778888887 46888888888887322 3556677777776421 135688888887776654
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=83.29 E-value=6.6 Score=35.50 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcC---CCCCCCcCHHHHHHHHHhC
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDAD---TNGDGKIDPEEWKEFVKKN 187 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d---~~~dg~Is~~ef~~~l~~~ 187 (220)
.+..++..+|..|..++ +.++.++|..+|... .......+.+.++.++..+..... .-+.+.++.+.|.++|...
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 35678999999996444 899999999999765 100113466677777765544332 1234569999999999774
No 131
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=83.28 E-value=6.5 Score=26.54 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+..-|..+.. +|.+....|..++ |-.-+.+-+.+++..+-..-... ...|+.+|+..++.+
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI-------GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI-------GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH-------T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc-------CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 4455666655 6788888887776 55555655555554443433333 456888887777654
No 132
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.18 E-value=2.4 Score=37.62 Aligned_cols=65 Identities=12% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 114 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 114 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
...+.-|..+|.|+.|+++...+.++|... +..++...+.+.+ .+.|.+..|.+...||.+++..
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~----~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSE----NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 345567999999999999999999999876 6678887776666 6777777899999999988764
No 133
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=82.82 E-value=2.8 Score=37.35 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHH-HhcCCCCceeehHHHHHHHhhhCCCCcH
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFD-LFDLKRNGVIEFGEFVRSLGVFHPHALV 112 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~-~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 112 (220)
+++.-++.+...|..+|.+ +||-++.+|+..++...+..+-. ...+. ..-.+..|.+++.-|++.|+.+.-....
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~pW~--~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~ 384 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSPWT--SSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPR 384 (625)
T ss_pred ccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCCCC--CCcccccceecccceeehhhHHHHHHHHhhccHH
Confidence 8899999999999999999 99999999999777443322200 00000 0112357899999999999866522222
Q ss_pred HHHHHHHHHhcCCCC
Q 027657 113 EDKIAFAFRLYDLRQ 127 (220)
Q Consensus 113 ~~~~~~~F~~~D~d~ 127 (220)
..--..+|--|..++
T Consensus 385 ~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 385 RTLEYLAYLGFPTDA 399 (625)
T ss_pred HHHHHHHhcCCcccc
Confidence 233344566666553
No 134
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=82.45 E-value=8.7 Score=27.92 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHHHHhhh--------cCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCccc
Q 027657 128 TGFIEREELKEMVLALLHE--------SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPYL 199 (220)
Q Consensus 128 ~G~I~~~E~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~~ 199 (220)
+|.|+...|-.+|+.-+.. ....++.+++..++..+...+-.+ .+.=+++...+...|.++.++..+++
T Consensus 97 n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae---~~dtE~Ye~vwkKmPaY~~nil~~~l 173 (175)
T PF04876_consen 97 NGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAE---SSDTEHYEKVWKKMPAYFSNILQPYL 173 (175)
T ss_pred ccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHhhHHHHHHHHHHh
Confidence 4555555555555433221 245566667666666666666444 34568888899999999888766543
No 135
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=81.77 E-value=1.8 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMV 140 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l 140 (220)
..+.+..+|+.+ .++.++|+.+||++.|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 346789999999 7888999999999976
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=81.59 E-value=7.3 Score=35.00 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC--CCCHHHHHHHHHHHHhhcCC----CCCCCcCHHHHHHH
Q 027657 110 ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL--ILSDDVIETIVDKSFSDADT----NGDGKIDPEEWKEF 183 (220)
Q Consensus 110 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~--~~~~~~~~~~~~~~f~~~d~----~~dg~Is~~ef~~~ 183 (220)
..+..++..+|..+-. ++.|+.++|..+|... +. ..+.+.+..++ ..+.. ...|.++.+.|..+
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~----Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~y 89 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEV----QGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRY 89 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHh----cCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHH
Confidence 3466889999999864 3689999999999765 32 23445555555 33322 13467999999999
Q ss_pred HHhC
Q 027657 184 VKKN 187 (220)
Q Consensus 184 l~~~ 187 (220)
|...
T Consensus 90 l~s~ 93 (567)
T PLN02228 90 LFSD 93 (567)
T ss_pred hcCc
Confidence 9764
No 137
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.31 E-value=15 Score=26.15 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=55.3
Q ss_pred eehHHHHHHHhhh------CCCCcHHHHHHHHHHhcCCCC--CCcccHHHHHHHHHHHhhh----cCCCCC------HHH
Q 027657 94 IEFGEFVRSLGVF------HPHALVEDKIAFAFRLYDLRQ--TGFIEREELKEMVLALLHE----SDLILS------DDV 155 (220)
Q Consensus 94 i~~~ef~~~~~~~------~~~~~~~~~~~~~F~~~D~d~--~G~I~~~E~~~~l~~~~~~----~~~~~~------~~~ 155 (220)
|-|..|..++.-. .-+.-+...+..+|+....+. +..|+..|+..++..++.. .+.... +.-
T Consensus 15 IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a 94 (127)
T PF09068_consen 15 IRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLA 94 (127)
T ss_dssp -SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HH
T ss_pred HHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHH
Confidence 6666666665421 112233455667777765444 4679999999999988732 121111 256
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHH
Q 027657 156 IETIVDKSFSDADTNGDGKIDPEEWKEFVK 185 (220)
Q Consensus 156 ~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~ 185 (220)
++-.++.++..+|+++.|.|+.-.|.-.+.
T Consensus 95 ~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 95 VDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 667789999999999999999998887654
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=79.22 E-value=5 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.0
Q ss_pred CceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCC
Q 027657 91 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQ 127 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 127 (220)
.+.|+|+.|..++........+++-+..+|..|-...
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4689999999999998877788899999999996543
No 139
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.94 E-value=6.6 Score=34.38 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHH
Q 027657 114 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 185 (220)
Q Consensus 114 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~ 185 (220)
+-+..-|+.+-.|-.|.|+-.--+.++.+- .++-+++ ..+|...|.++||.+++.||...+.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKS------klpi~EL----shIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKS------KLPIEEL----SHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhc------cCchHHH----HHHHhhcccCccccccHHHHHhhHh
Confidence 335566888888999999998888887643 4444444 5556888999999999999998774
No 140
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=74.71 E-value=6 Score=39.12 Aligned_cols=69 Identities=20% Similarity=0.384 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHH------------HHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHH
Q 027657 34 FTVCEVEALYEL------------FKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVR 101 (220)
Q Consensus 34 ~~~~~i~~l~~~------------F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 101 (220)
-+.+.|..++.. |..+|++ +.|.|++.+|+.++.....-....++-++.-...|.+...+|++|+.
T Consensus 4039 ~nvemilkffdmflklkdltssdtfkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4039 NNVEMILKFFDMFLKLKDLTSSDTFKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVD 4116 (5019)
T ss_pred ccHHHHHHHHHHHHHHhhccccccchhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHH
Confidence 345556555555 4557889 99999999999998544322333455666666777778899999988
Q ss_pred HHh
Q 027657 102 SLG 104 (220)
Q Consensus 102 ~~~ 104 (220)
-+.
T Consensus 4117 rfh 4119 (5019)
T KOG2243|consen 4117 RFH 4119 (5019)
T ss_pred Hhc
Confidence 765
No 141
>PLN02952 phosphoinositide phospholipase C
Probab=72.65 E-value=36 Score=30.96 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=58.2
Q ss_pred CCCcccHHHHHHHHhccC---CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC-cHHHHHHHHHHhc----C--
Q 027657 55 DDGIIHKEEFQLALFRNK---NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA-LVEDKIAFAFRLY----D-- 124 (220)
Q Consensus 55 ~~g~i~~~e~~~~l~~~~---~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~----D-- 124 (220)
+.|.++.++|..+...+. ..+...+..+|..+..++ +.++.++|..++....+.. ...+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999986554332 225667899999986644 6799999999998766432 3344455554433 1
Q ss_pred -CCCCCcccHHHHHHHHH
Q 027657 125 -LRQTGFIEREELKEMVL 141 (220)
Q Consensus 125 -~d~~G~I~~~E~~~~l~ 141 (220)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12335689999999885
No 142
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=71.78 E-value=9.9 Score=25.52 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=23.5
Q ss_pred CCCcccHHHHHHHH---hccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhh
Q 027657 55 DDGIIHKEEFQLAL---FRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 105 (220)
Q Consensus 55 ~~g~i~~~e~~~~l---~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 105 (220)
.||.++..|...+- .....-+......++..+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46666666655332 1111112333445555554443444555555555543
No 143
>PLN02223 phosphoinositide phospholipase C
Probab=68.39 E-value=33 Score=30.67 Aligned_cols=76 Identities=16% Similarity=-0.063 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHhhcC----CCCCCCcCHHHHHHHHH
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD-LILSDDVIETIVDKSFSDAD----TNGDGKIDPEEWKEFVK 185 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d----~~~dg~Is~~ef~~~l~ 185 (220)
.+.+.++.+|..+. ++.|.++.+.+.+++.-+.+..| ...+.++++.+++.++.... ....+.++.+.|.+++.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35577899999994 67799999999999844333323 35677888888887765432 12235699999999998
Q ss_pred hC
Q 027657 186 KN 187 (220)
Q Consensus 186 ~~ 187 (220)
..
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 74
No 144
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=68.30 E-value=2.9 Score=31.99 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHhcCC-CCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 027657 83 FDLFDLK-RNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMV 140 (220)
Q Consensus 83 ~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l 140 (220)
|..+|.. .+|.++-.|++.+-+.+. +-+.-....|...|.|++|+|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4445543 478899888887655443 234456788999999999999999999876
No 145
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=68.12 E-value=3.2 Score=31.75 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=42.1
Q ss_pred HHHHhcCC-CCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHH
Q 027657 118 FAFRLYDL-RQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 185 (220)
Q Consensus 118 ~~F~~~D~-d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~ 185 (220)
+-|-.+|. -.+|+++-.|+.-+- .+-++.+.. +..+|...|.|+||.|+.+||...+.
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~-------ap~ipme~c---~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLR-------APLIPMEHC---TTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeeccccCCCcccccccccccccc-------CCcccHHhh---chhhhhcccCCCCCceeHHHhhcccC
Confidence 34555664 348999999987653 344454444 67778999999999999999987653
No 146
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.23 E-value=20 Score=20.19 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc
Q 027657 37 CEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR 70 (220)
Q Consensus 37 ~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~ 70 (220)
..+..+..+|.++...-....++++.||+..+..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3466777788887632114778999999988743
No 147
>PLN02222 phosphoinositide phospholipase C 2
Probab=66.09 E-value=28 Score=31.52 Aligned_cols=68 Identities=10% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 112 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 112 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+..++..+|..+.. ++.++.++|..+|... +.....+.+.+..++... .. ....+.++++.|.++|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~--Q~~~~~~~~~~~~ii~~~-~~--~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDV--QKQDKATREDAQSIINSA-SS--LLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHh--cCCccCCHHHHHHHHHhh-hh--hhhccCcCHHHHHHHhcC
Confidence 44589999999964 4799999999999765 111234666777777542 11 123467999999999986
No 148
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.03 E-value=5.5 Score=33.53 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHH
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWK 181 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~ 181 (220)
.+.+.++++|+.+|+.++|+|+-.-++.++... +...++.....+.+ ...|+..-|.|-.++|.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~----N~~vse~a~v~l~~---~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL----NRLVSEPAYVMLMR---QPLDPESLGIILLEDFL 369 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHh----cccccCHHHHHHhc---CccChhhcceEEecccc
Confidence 346789999999999999999999999998876 43444443322222 33455544555444443
No 149
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=65.42 E-value=20 Score=23.94 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHH
Q 027657 34 FTVCEVEALYELFKK 48 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~ 48 (220)
.++.|+..+...|..
T Consensus 16 v~~~E~~~i~~~l~~ 30 (104)
T cd07313 16 YDEEERAAIDRLLAE 30 (104)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777777766
No 150
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=62.24 E-value=14 Score=25.35 Aligned_cols=68 Identities=15% Similarity=0.357 Sum_probs=36.9
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHhh------hcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhh
Q 027657 121 RLYDLRQTGFIEREELKEMVLALLH------ESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 192 (220)
Q Consensus 121 ~~~D~d~~G~I~~~E~~~~l~~~~~------~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~ 192 (220)
++||+..+-+|+.+++++++..--. +.|..++...+-.+| .+....+...++.+=+.++++-..+..+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII----~E~E~~g~~~lp~~~L~qlIr~yg~~~q 83 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQII----AEEESGGEPVLSTDFLTQIIRFYGGSMQ 83 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHhChhHH
Confidence 4677777778888888777653100 123333333332332 4444455566776666666665444443
No 151
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=60.83 E-value=12 Score=26.98 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=41.8
Q ss_pred cccccCCCCCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHHHHHH------HcCCCCCCCcccHHHHHHHHhc-cC-CCC
Q 027657 4 VLTKKTKQTPGYEEPTVLAAETPCQSSSCSFTVCEVEALYELFKK------LSSSIFDDGIIHKEEFQLALFR-NK-NKK 75 (220)
Q Consensus 4 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~------~d~~~~~~g~i~~~e~~~~l~~-~~-~~~ 75 (220)
.+.++++ +...++++... .+...++.+...|.. ++ ..+.|+.+.|+.+|.. +. .-+
T Consensus 4 ~~~~lsp-----~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~----~~~~Id~egF~~Fm~~yLe~d~P 67 (138)
T PF14513_consen 4 EWVSLSP-----EEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYN----PEEPIDYEGFKLFMKTYLEVDLP 67 (138)
T ss_dssp --S-S-H-----HHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGE----ETTEE-HHHHHHHHHHHTT-S--
T ss_pred ceeccCH-----HHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccC----CCCCcCHHHHHHHHHHHHcCCCC
Confidence 3445554 77888888888 888889888888863 33 4668999999988732 22 347
Q ss_pred hHHHHHHHHHhcCCC
Q 027657 76 NLFADRIFDLFDLKR 90 (220)
Q Consensus 76 ~~~~~~l~~~~d~~~ 90 (220)
...++.+|..|....
T Consensus 68 ~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 68 EDLCQHLFLSFQKKP 82 (138)
T ss_dssp HHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhCcc
Confidence 778899999987644
No 152
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=60.73 E-value=11 Score=30.92 Aligned_cols=61 Identities=11% Similarity=0.293 Sum_probs=41.1
Q ss_pred HHHHHcCCCCCCCcccHHHHHHHHhc----cC--CCChH-----------HHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 45 LFKKLSSSIFDDGIIHKEEFQLALFR----NK--NKKNL-----------FADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 45 ~F~~~d~~~~~~g~i~~~e~~~~l~~----~~--~~~~~-----------~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
.|...|.| ++|.++..++...+.. .- .+... ...-++...|.|.+..|+.+||+..-....
T Consensus 249 FF~LHD~N--sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 249 FFALHDLN--SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred heeeeccC--CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 45666777 9999999999866522 11 11111 123466778999999999999998765443
No 153
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=59.56 E-value=50 Score=22.00 Aligned_cols=11 Identities=36% Similarity=0.607 Sum_probs=6.2
Q ss_pred CCCcccHHHHH
Q 027657 55 DDGIIHKEEFQ 65 (220)
Q Consensus 55 ~~g~i~~~e~~ 65 (220)
-||.++..|..
T Consensus 12 aDG~v~~~E~~ 22 (106)
T cd07316 12 ADGRVSEAEIQ 22 (106)
T ss_pred ccCCcCHHHHH
Confidence 35666655544
No 154
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=59.42 E-value=68 Score=23.52 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=51.4
Q ss_pred HHHHHh---cCCCCceeehHHHHHHHhh--hCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHH
Q 027657 81 RIFDLF---DLKRNGVIEFGEFVRSLGV--FHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDV 155 (220)
Q Consensus 81 ~l~~~~---d~~~~g~i~~~ef~~~~~~--~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~ 155 (220)
.+|..| ...+...++-..|..++.. +.........+-.+|..+-..+...|++++|..+|..+....+...+ .
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~--~ 80 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS--S 80 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT--H
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc--c
Confidence 344444 3444556888888877764 23344677889999999866666779999999999877554433222 3
Q ss_pred HHHHHHHHHhhcCC
Q 027657 156 IETIVDKSFSDADT 169 (220)
Q Consensus 156 ~~~~~~~~f~~~d~ 169 (220)
++++...+.....+
T Consensus 81 ~~~~~~kl~~~~~P 94 (154)
T PF05517_consen 81 AEELKEKLTAGGGP 94 (154)
T ss_dssp HHHHHHHHHTT--S
T ss_pred HHHHHHHHHccCcc
Confidence 44444444333333
No 155
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=58.67 E-value=43 Score=21.05 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=34.2
Q ss_pred CceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 027657 91 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALL 144 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~ 144 (220)
+..++|......+..... ......+...|..| ..+.|+.+||...+..++
T Consensus 6 sp~~~F~~L~~~l~~~l~-~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLP-PSKMDLLQKHYEEF---KKKKISREEFVRKLRQIV 55 (70)
T ss_pred CCcccHHHHHHHHHHHCC-HHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHH
Confidence 456788888888876662 33334444444444 578999999999998874
No 156
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=57.50 E-value=6 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.4
Q ss_pred CCCCCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHHH
Q 027657 9 TKQTPGYEEPTVLAAETPCQSSSCSFTVCEVEALYEL 45 (220)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 45 (220)
..|+++.+....|++.|. ++..+|..++..
T Consensus 7 ~nPYPs~~ek~~L~~~tg-------ls~~Qi~~WF~N 36 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTG-------LSRKQISNWFIN 36 (40)
T ss_dssp TSGS--HHHHHHHHHHHT-------S-HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcC-------CCHHHHHHHHHH
Confidence 357788899999999999 999999887653
No 157
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=56.42 E-value=20 Score=24.42 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=24.5
Q ss_pred hhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 165 SDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 165 ~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
+..+.+....++-+++..+|..+|.+++...+..
T Consensus 62 k~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~ 95 (105)
T cd03035 62 RKLDDAQKAALDAAKAIALMLEHPSLIKRPVLET 95 (105)
T ss_pred HhCChhhhccCCHHHHHHHHHhCcCeeecceEEe
Confidence 4443332245889999999999999998875543
No 158
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=56.29 E-value=12 Score=26.09 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHh
Q 027657 151 LSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 151 ~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~ 186 (220)
+++++++.+. .++-.|..|+|.|.||..-+..
T Consensus 4 LtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHH----TTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhh----hhCcCCccCCEeHHHHHHHccc
Confidence 5676765555 8889999999999999987653
No 159
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=54.73 E-value=94 Score=29.54 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=78.7
Q ss_pred CCCHHHHHHH-HHHHHHHcCCCCCCCcccHHHHHHHHhccCCC--ChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCC
Q 027657 33 SFTVCEVEAL-YELFKKLSSSIFDDGIIHKEEFQLALFRNKNK--KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH 109 (220)
Q Consensus 33 ~~~~~~i~~l-~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 109 (220)
+.++-+|..+ +..+-..|.+ ....|+..+++.+|...... ......+-|..... ..+.++|++|..+...+.-.
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred CCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhc
Confidence 3667777655 4466677766 67779999999888554322 22233333444333 35679999999887654411
Q ss_pred --CcHHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhhcCCCCCHH---HHHHHHHHHHhhcC-CCCCCCcCHHHHH
Q 027657 110 --ALVEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHESDLILSDD---VIETIVDKSFSDAD-TNGDGKIDPEEWK 181 (220)
Q Consensus 110 --~~~~~~~~~~F~~~--D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~---~~~~~~~~~f~~~d-~~~dg~Is~~ef~ 181 (220)
..........|-.= +...--.|+..||.++|..- ....... .++.++..+.+..- .-....++++||+
T Consensus 213 ~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~----Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv 288 (1267)
T KOG1264|consen 213 QQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHE----QQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFV 288 (1267)
T ss_pred cchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhh----hHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHH
Confidence 11111111111111 11112479999999998643 2222111 22222222222211 1234579999999
Q ss_pred HHHHh
Q 027657 182 EFVKK 186 (220)
Q Consensus 182 ~~l~~ 186 (220)
.++-.
T Consensus 289 ~fLFS 293 (1267)
T KOG1264|consen 289 TFLFS 293 (1267)
T ss_pred HHHhh
Confidence 98865
No 160
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.98 E-value=9 Score=36.32 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 107 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 107 (220)
..++.+...+..+|...|.+ .+|.|+..+....+...++ ....+..+|...|..+.|.+++.+|...+....
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl-~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGL-SKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCC-ChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 47888999999999999999 9999999999988766443 344568899999999999999999988766443
No 161
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=53.79 E-value=84 Score=24.51 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHhccC----CCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCC-cHH-HHHHHHHHhcCCCCC
Q 027657 55 DDGIIHKEEFQLALFRNK----NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA-LVE-DKIAFAFRLYDLRQT 128 (220)
Q Consensus 55 ~~g~i~~~e~~~~l~~~~----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~-~~~~~~F~~~D~d~~ 128 (220)
+.|.|+..|+...+++.. .-++..+.+....+..-+.| +....|-.......... ... .....+.........
T Consensus 110 ~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~~~~il~~~~~~~~ 188 (223)
T PF04157_consen 110 NGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKDQSRILELAEEENG 188 (223)
T ss_dssp TTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HHHHHHHHHH--TTT
T ss_pred CCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHHHHHHHHHHHhhcC
Confidence 566777777776665433 12333445555555555554 44333332222222112 222 455666666634557
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 027657 129 GFIEREELKEMVLALLHESDLILSDDVIETIVDK 162 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (220)
|+++..++..-+ .++..-+.+.+..
T Consensus 189 g~vt~~~l~~~~---------~ws~~~a~~~L~~ 213 (223)
T PF04157_consen 189 GGVTASELAEKL---------GWSVERAKEALEE 213 (223)
T ss_dssp SEEEHHHHHHHH---------TB-HHHHHHHHHH
T ss_pred CCCCHHHHHHHh---------CCCHHHHHHHHHH
Confidence 899999888755 3566555555543
No 162
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.52 E-value=1.1e+02 Score=29.24 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=58.5
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCC---------CcHHHHHHHHHHhcCCCC----
Q 027657 61 KEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH---------ALVEDKIAFAFRLYDLRQ---- 127 (220)
Q Consensus 61 ~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~---------~~~~~~~~~~F~~~D~d~---- 127 (220)
.+.|..++..+. +...++++|..+..+...+++.+++..++....+. ......+..+...|.+++
T Consensus 207 ~e~f~~~l~klc--pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 207 LEKFYRLLNKLC--PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHHhcC--CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 334444454443 34467999999999988999999999998765432 233567888889987765
Q ss_pred CCcccHHHHHHHHH
Q 027657 128 TGFIEREELKEMVL 141 (220)
Q Consensus 128 ~G~I~~~E~~~~l~ 141 (220)
.|.|+.+-|..++.
T Consensus 285 ~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLM 298 (1189)
T ss_pred ccccchhhhHHHhh
Confidence 78999999988874
No 163
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=49.20 E-value=29 Score=16.25 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=10.0
Q ss_pred CCCCCCcccHHHHHHH
Q 027657 124 DLRQTGFIEREELKEM 139 (220)
Q Consensus 124 D~d~~G~I~~~E~~~~ 139 (220)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677777777666443
No 164
>PLN02228 Phosphoinositide phospholipase C
Probab=48.57 E-value=83 Score=28.51 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=5.9
Q ss_pred cccHHHHHHHH
Q 027657 58 IIHKEEFQLAL 68 (220)
Q Consensus 58 ~i~~~e~~~~l 68 (220)
.|+.++|..+|
T Consensus 38 ~~t~~~~~~FL 48 (567)
T PLN02228 38 KMSFDELLRFV 48 (567)
T ss_pred ccCHHHHHHHH
Confidence 45555555554
No 165
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=48.43 E-value=56 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.7
Q ss_pred CCCcCHHHHHHHHHhChhhhhhcCC
Q 027657 172 DGKIDPEEWKEFVKKNPSLIKNMTL 196 (220)
Q Consensus 172 dg~Is~~ef~~~l~~~~~~~~~~~~ 196 (220)
+|.||..||++.+..+..+.+.+--
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~ 66 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFE 66 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHcc
Confidence 4899999999999999988887643
No 166
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=47.99 E-value=1.1e+02 Score=22.44 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC-CCCCHHHHH
Q 027657 79 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD-LILSDDVIE 157 (220)
Q Consensus 79 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~-~~~~~~~~~ 157 (220)
+..++..-+.+.++.|++..|..++...++.. +..-|- .+...++.++++.++..+++... .....++.+
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdW-----IT~~~L----kh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye 155 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLGDW-----ITKNFL----KHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYE 155 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhhhH-----HHHHHH----hccchhhHHHHHHHHHHHHHHHhccCCchHHHH
Confidence 34444443445578899999999987666432 221221 24678999999999988765432 334445555
Q ss_pred HHHHHH
Q 027657 158 TIVDKS 163 (220)
Q Consensus 158 ~~~~~~ 163 (220)
.+++.+
T Consensus 156 ~vwkKm 161 (175)
T PF04876_consen 156 KVWKKM 161 (175)
T ss_pred HHHHHh
Confidence 666443
No 167
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=45.08 E-value=55 Score=21.48 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 027657 129 GFIEREELKEMVLALLHESDLILSDDVIETIVD 161 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (220)
..||.+||..+.... +..+++.+++.+++
T Consensus 13 n~iT~~eLlkyskqy----~i~it~~QA~~I~~ 41 (85)
T PF11116_consen 13 NNITAKELLKYSKQY----NISITKKQAEQIAN 41 (85)
T ss_pred hcCCHHHHHHHHHHh----CCCCCHHHHHHHHH
Confidence 358888888887666 88899988888773
No 168
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.59 E-value=45 Score=28.85 Aligned_cols=57 Identities=19% Similarity=0.092 Sum_probs=36.8
Q ss_pred CCCceeehHHHHHHHhhhCCC---CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhh
Q 027657 89 KRNGVIEFGEFVRSLGVFHPH---ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLH 145 (220)
Q Consensus 89 ~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~ 145 (220)
.|+...+..||+..-...+.. ....+.++.+-+.+|.|.+|.|+.+|=-.+|+.=++
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk 99 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMK 99 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhh
Confidence 445556666776554433321 223456777888888888888888888887765443
No 169
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=43.22 E-value=48 Score=23.37 Aligned_cols=93 Identities=23% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcc---CCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHH
Q 027657 39 VEALYELFKKLSSSIFDDGIIHKEEFQLALFRN---KNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDK 115 (220)
Q Consensus 39 i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 115 (220)
...+......+.. -||.++.+|...+.... ..-+......+...++.-....+++.+++..+...........-
T Consensus 23 ~~a~~~ll~~~a~---aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~l 99 (140)
T PF05099_consen 23 REALLALLAAVAK---ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDL 99 (140)
T ss_dssp HHHHHHHHHHHHH---TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHH
Confidence 3334444444444 58999999987554222 12233345666666654444467888888777654432233344
Q ss_pred HHHHHHhcCCCCCCcccHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREEL 136 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~ 136 (220)
+..++...-.| |.++..|-
T Consensus 100 l~~l~~ia~AD--G~~~~~E~ 118 (140)
T PF05099_consen 100 LRMLIAIAYAD--GEISPEEQ 118 (140)
T ss_dssp HHHHHHHCTCT--TC-SCCHH
T ss_pred HHHHHHHHhcC--CCCCHHHH
Confidence 56667776654 55555443
No 170
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=43.06 E-value=91 Score=20.19 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCC
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLK 89 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~ 89 (220)
|+.+++..++.+|..+-. ++ .+.++-...+.... ...+.+..+...+...
T Consensus 28 fs~~~i~~l~~ayr~l~~----~~-~~~~~a~~~l~~~~-~~~~~v~~~~~Fi~~S 77 (83)
T PF13720_consen 28 FSKEEISALRRAYRILFR----SG-LTLEEALEELEEEY-PDSPEVREIVDFIRNS 77 (83)
T ss_dssp S-HHHHHHHHHHHHHHHT----SS-S-HHHHHHHHHHHT-TSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh----CC-CCHHHHHHHHHHhc-cCCHHHHHHHHHHHhC
Confidence 999999999999999863 23 56666555554422 2355566666665533
No 171
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=41.80 E-value=58 Score=19.77 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhh
Q 027657 111 LVEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHE 146 (220)
Q Consensus 111 ~~~~~~~~~F~~~--D~d~~G~I~~~E~~~~l~~~~~~ 146 (220)
.+.+++..++++| +. +...++.+|++.+|...+++
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~lv~e 48 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRLVEE 48 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHHC
Confidence 5567788888888 33 34468888888888776443
No 172
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=41.67 E-value=62 Score=21.66 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH---HHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 129 GFIEREELKEMVLALLHESDLILSDDVIETIVD---KSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
...+.+++..++... +. .++.+++ ..+...+.+....++-+|+.++|..+|.+++...+.
T Consensus 34 ~~~~~~~l~~~~~~~----~~-----~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikRPii~ 96 (105)
T cd02977 34 EPPTKEELKELLAKL----GL-----GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKRPIVV 96 (105)
T ss_pred CCCCHHHHHHHHHhc----CC-----CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeCCEEE
Confidence 445666666666543 21 1122232 233444444345789999999999999998766443
No 173
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=40.86 E-value=69 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 173 GKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 173 g~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
..++-+++..+|..+|.+++...+..
T Consensus 72 ~~ls~~e~i~~l~~~P~LikRPIi~~ 97 (114)
T TIGR00014 72 PNLSDQELLDAMVAHPILLERPIVVA 97 (114)
T ss_pred cCCCHHHHHHHHHHCcCcccCCeEEE
Confidence 36889999999999999998875543
No 174
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.73 E-value=1e+02 Score=21.91 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=36.6
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 129 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
..++.+|+...+... +.. .+.+-.--...+...+.+. ..++-+++..+|..+|.+++...+.
T Consensus 35 ~~~s~~eL~~~l~~~----~~~--~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~LikRPIv~ 96 (132)
T PRK13344 35 EPLTKEEILAILTKT----ENG--IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILKSPILI 96 (132)
T ss_pred CCCCHHHHHHHHHHh----CCC--HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCccceeCcEEE
Confidence 457777777777654 211 1111111122334444332 4689999999999999999876554
No 175
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=39.27 E-value=40 Score=20.80 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.7
Q ss_pred HhcCCCCCCcccHHHHHHHHHH
Q 027657 121 RLYDLRQTGFIEREELKEMVLA 142 (220)
Q Consensus 121 ~~~D~d~~G~I~~~E~~~~l~~ 142 (220)
++||...+.+|+.+++++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5789999999999999998764
No 176
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=39.20 E-value=1.2e+02 Score=20.98 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVD 161 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (220)
+..+|-++...++...+..+++.+|..+ |....++.++.+++
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV----G~E~d~e~i~~vis 44 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV----GAEIDDERINLVLS 44 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh----CcccCHHHHHHHHH
Confidence 3456777777788889999999999888 88888888877773
No 177
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=38.97 E-value=98 Score=21.74 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=41.5
Q ss_pred CceeehHHHHHHHhhh-CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCC
Q 027657 91 NGVIEFGEFVRSLGVF-HPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADT 169 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~~-~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 169 (220)
||.|+-+|...+...+ .....+......+...++.-....++..++... + ...++.+....++..++.....
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---l----~~~~~~~~r~~ll~~l~~ia~A 109 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRE---L----RDSLSPEEREDLLRMLIAIAYA 109 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHH---H----CTS--HHHHHHHHHHHHHHCTC
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHH---H----HHhhchHHHHHHHHHHHHHHhc
Confidence 6778887766554433 111112233344444444322334444444443 3 5566677888888888888877
Q ss_pred CCCCCcCHHHHHH
Q 027657 170 NGDGKIDPEEWKE 182 (220)
Q Consensus 170 ~~dg~Is~~ef~~ 182 (220)
|+.-.-.-.++.+
T Consensus 110 DG~~~~~E~~~l~ 122 (140)
T PF05099_consen 110 DGEISPEEQEFLR 122 (140)
T ss_dssp TTC-SCCHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 6433333334443
No 178
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.56 E-value=59 Score=16.68 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcccHHHHHHHH
Q 027657 37 CEVEALYELFKKLSSSIFDDGIIHKEEFQLAL 68 (220)
Q Consensus 37 ~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l 68 (220)
+++..+...+ ..|.||.+||...-
T Consensus 3 ~~L~~L~~l~--------~~G~IseeEy~~~k 26 (31)
T PF09851_consen 3 DRLEKLKELY--------DKGEISEEEYEQKK 26 (31)
T ss_pred HHHHHHHHHH--------HcCCCCHHHHHHHH
Confidence 4555555555 57889999988653
No 179
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=36.64 E-value=1.4e+02 Score=26.51 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=51.4
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcC----C-CCCCCcCHHHHHHHHHhChhhh
Q 027657 117 AFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDAD----T-NGDGKIDPEEWKEFVKKNPSLI 191 (220)
Q Consensus 117 ~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d----~-~~dg~Is~~ef~~~l~~~~~~~ 191 (220)
..+|.+|-...++.+...-|..+|.+. |...++.-+.+++..+= .++ . ...+.++.+.|++++-.+..++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkst----GLrtsDPRLk~mMd~mK-d~dq~~~e~S~gw~LdKDlFKkcI~sSI~lv 163 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKST----GLRTSDPRLKDMMDEMK-DVDQEENESSSGWLLDKDLFKKCIFSSIVLV 163 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHc----CCCcCCchHHHHHHHHH-HHHhhhcccccceeecHHHHHHhhccchhHH
Confidence 456888866667999999999999887 88888877777765442 222 2 2335699999999997765554
Q ss_pred h
Q 027657 192 K 192 (220)
Q Consensus 192 ~ 192 (220)
.
T Consensus 164 S 164 (622)
T KOG0506|consen 164 S 164 (622)
T ss_pred H
Confidence 3
No 180
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=36.55 E-value=96 Score=21.20 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=36.6
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH---HHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 129 GFIEREELKEMVLALLHESDLILSDDVIETIVD---KSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
-.++.+|+..++..+ +.. ++.+++ ..+.....+. ..++-+++..+|..+|.+++...+..
T Consensus 34 ~~~t~~el~~~l~~~----~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~ 96 (112)
T cd03034 34 TPPTAAELRELLAKL----GIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIERPIVVT 96 (112)
T ss_pred CCcCHHHHHHHHHHc----CCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccCCEEEE
Confidence 346667776666554 211 112232 1233433332 46899999999999999998875543
No 181
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=36.47 E-value=2.7e+02 Score=23.79 Aligned_cols=55 Identities=11% Similarity=0.353 Sum_probs=43.8
Q ss_pred CceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh
Q 027657 91 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE 146 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~ 146 (220)
+..++++.+........ .....+....++...|.+++|.....++.+++...++.
T Consensus 72 ~~~~~l~k~~~~~~~~~-~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks 126 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYE-KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKS 126 (427)
T ss_pred CccchHHHHhhHHhhhc-cCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhh
Confidence 34588888887776655 45667778888999999999999999999998877653
No 182
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=35.02 E-value=1.3e+02 Score=20.82 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 027657 117 AFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVD 161 (220)
Q Consensus 117 ~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (220)
..+|-+.-..++..++.+++..+|.+. |....+..+..+++
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~Aa----GveVd~~~~~l~~~ 46 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAV----NADVEDDVLDNFFK 46 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHHH
Confidence 345555555667789999999999888 88888877766663
No 183
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=34.61 E-value=42 Score=19.45 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCCCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHHHH
Q 027657 10 KQTPGYEEPTVLAAETPCQSSSCSFTVCEVEALYELF 46 (220)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F 46 (220)
.++++...+..++..+. ++..+|..++..=
T Consensus 22 ~~~P~~~~~~~la~~~~-------l~~~qV~~WF~nr 51 (59)
T cd00086 22 NPYPSREEREELAKELG-------LTERQVKIWFQNR 51 (59)
T ss_pred CCCCCHHHHHHHHHHHC-------cCHHHHHHHHHHH
Confidence 34566688888999988 9998888886543
No 184
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=34.28 E-value=72 Score=16.44 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=7.2
Q ss_pred cCHHHHHHHHHh
Q 027657 175 IDPEEWKEFVKK 186 (220)
Q Consensus 175 Is~~ef~~~l~~ 186 (220)
||.+||++++..
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 777787777654
No 185
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=34.08 E-value=1.5e+02 Score=20.22 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=23.9
Q ss_pred hhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 165 SDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 165 ~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
+....+. ..++-+++..+|..+|.+++...+.
T Consensus 65 k~l~~~~-~~ls~~e~i~~l~~~p~LikRPii~ 96 (115)
T cd03032 65 KNLNIDI-DELSLSELIRLISEHPSLLRRPIII 96 (115)
T ss_pred HHcCCCc-ccCCHHHHHHHHHhChhheeCCEEE
Confidence 4443333 4689999999999999999876544
No 186
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=32.33 E-value=1.6e+02 Score=20.01 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=37.5
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhc
Q 027657 119 AFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDA 167 (220)
Q Consensus 119 ~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 167 (220)
+-+.....++|.--+.+-...+...+...|.++++++++.++..+...+
T Consensus 56 veq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 56 VEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3444444458888888888888887888899999999999998776655
No 187
>PRK12559 transcriptional regulator Spx; Provisional
Probab=32.05 E-value=1.1e+02 Score=21.77 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 129 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
..++.+|+..++... +.. ...+-.--...|...+.+. ..++-++...+|..+|.+++...+..
T Consensus 35 ~~~s~~el~~~l~~~----~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~ 97 (131)
T PRK12559 35 NSMTVDELKSILRLT----EEG--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLRRPIMLD 97 (131)
T ss_pred CcCCHHHHHHHHHHc----CCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEe
Confidence 346666666666543 211 1111111122334544443 35889999999999999998775543
No 188
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=31.60 E-value=23 Score=21.63 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=8.5
Q ss_pred CCccccccCC
Q 027657 1 MGCVLTKKTK 10 (220)
Q Consensus 1 mg~~~s~~~~ 10 (220)
|||.+||+..
T Consensus 1 MGC~~SK~d~ 10 (60)
T PF04783_consen 1 MGCSQSKLDD 10 (60)
T ss_pred CCCCcccccC
Confidence 9999999864
No 189
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=31.04 E-value=1.7e+02 Score=20.20 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 027657 117 AFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIV 160 (220)
Q Consensus 117 ~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~ 160 (220)
..+|-+.-..++..++.+++..+|... |....+..+..++
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~Aa----GveVe~~~~~lf~ 43 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSV----GVEVDDEKLNKVI 43 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH
Confidence 345555556677789999999999888 8888777666665
No 190
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=30.67 E-value=90 Score=18.08 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhcCCCCCHH---HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChh
Q 027657 134 EELKEMVLALLHESDLILSDD---VIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 189 (220)
Q Consensus 134 ~E~~~~l~~~~~~~~~~~~~~---~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~ 189 (220)
.+|..+..-+....|..++.. .++.-+....... |.=++.+|...+...|.
T Consensus 3 ~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 3 AEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCC
Confidence 445555444444456666543 3444444444444 56679999999887764
No 191
>PRK10026 arsenate reductase; Provisional
Probab=29.50 E-value=1.2e+02 Score=21.93 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=24.1
Q ss_pred HhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 164 FSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 164 f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
|.....+. ..++.+++..+|..+|.+++...+.
T Consensus 66 yr~L~~~~-~~ls~~e~l~ll~~~P~LIKRPIi~ 98 (141)
T PRK10026 66 YEELGLAE-DKFTDDQLIDFMLQHPILINRPIVV 98 (141)
T ss_pred HHHcCCCc-cCCCHHHHHHHHHhCccceeCcEEE
Confidence 34444333 2589999999999999999876553
No 192
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=29.45 E-value=2.4e+02 Score=20.93 Aligned_cols=122 Identities=14% Similarity=0.252 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHh
Q 027657 43 YELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRL 122 (220)
Q Consensus 43 ~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~ 122 (220)
+.+|..+ .+|.++.+|+...+.... .+-+..+.+. |-| -.+ |..-.+...++.+.+..|..
T Consensus 20 kkV~~~L-----s~~W~T~~El~e~~G~d~-------~~~L~~LkK~--gLi-E~q----WrmP~pG~kPeKEYhtsYs~ 80 (160)
T PF09824_consen 20 KKVYDEL-----SKGWMTEEELEEKYGKDV-------RESLLILKKG--GLI-ESQ----WRMPEPGEKPEKEYHTSYSK 80 (160)
T ss_pred HHHHHHH-----HhccCCHHHHHHHHCcCH-------HHHHHHHHHc--Cch-hhc----cccCCCCCCchHHHHhhHhh
Confidence 3445555 678888888887772221 1222222211 111 111 22223344567777777777
Q ss_pred cCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhc
Q 027657 123 YDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM 194 (220)
Q Consensus 123 ~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~ 194 (220)
+-. +=+.+.+|+..++.. .-++++++.+++..+-..+.. |..+..+..+-+..+|.+++.+
T Consensus 81 vqa--NFqcs~~DLsdii~i------~f~~deel~~~~e~i~~~v~~---Gn~Sl~~lsr~l~~sp~firgl 141 (160)
T PF09824_consen 81 VQA--NFQCSMEDLSDIIYI------AFMSDEELRDYVEKIEKEVEA---GNTSLSDLSRKLGISPVFIRGL 141 (160)
T ss_pred eee--eeEeeHHHHHHHHhe------eecCHHHHHHHHHHHHHHHHc---CCCcHHHHHHHhCCCHHHHHHH
Confidence 744 346788888888753 346778888888777777643 7899999999999999888765
No 193
>PLN02230 phosphoinositide phospholipase C 4
Probab=29.32 E-value=2.5e+02 Score=25.73 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=8.0
Q ss_pred CcccHHHHHHHHhc
Q 027657 57 GIIHKEEFQLALFR 70 (220)
Q Consensus 57 g~i~~~e~~~~l~~ 70 (220)
+.|+.++|..+|..
T Consensus 43 ~~mt~~~l~~FL~~ 56 (598)
T PLN02230 43 AHMSPEQLQKLMAE 56 (598)
T ss_pred CccCHHHHHHHHHH
Confidence 55666666655533
No 194
>PLN02222 phosphoinositide phospholipase C 2
Probab=29.01 E-value=2.1e+02 Score=26.10 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCC---CChHHHHHHHHHhcC-CCCceeehHHHHHHHh
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN---KKNLFADRIFDLFDL-KRNGVIEFGEFVRSLG 104 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~ 104 (220)
..+.+|..++..|. +++.++.++|..+|..... .....+..++..+.. ...+.++++.|..++.
T Consensus 22 ~~~~ei~~if~~~~-------~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 22 EAPREIKTIFEKYS-------ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCcHHHHHHHHHhc-------CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 56776666665542 2367888888887754332 133455666666532 2245577777777774
No 195
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=28.92 E-value=1.7e+02 Score=20.73 Aligned_cols=33 Identities=12% Similarity=0.357 Sum_probs=24.1
Q ss_pred HhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCc
Q 027657 164 FSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 197 (220)
Q Consensus 164 f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~ 197 (220)
|+..+.+. ..++-+|+..+|..+|.+++...+.
T Consensus 64 ~k~l~~~~-~~ls~~e~i~ll~~~p~LikRPIi~ 96 (131)
T PRK01655 64 FQKLNVDV-ESLSLQDLIKLISDNPGLLRRPIII 96 (131)
T ss_pred HHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEE
Confidence 34444333 3588999999999999998876544
No 196
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.83 E-value=38 Score=34.56 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCC-----ChHHHHHHHHHhcCCCCceeehHHHHHHHhhh
Q 027657 33 SFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-----KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 106 (220)
Q Consensus 33 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~-----~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 106 (220)
.+++.+++..+++++.+|++ ..|+|...++...+..+..+ +++. +-+-..+-...+++|++.+.+.++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpe--atg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPE--ATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChh--hheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 59999999999999999999 99999999999888543211 1111 223333345577889999988887653
No 197
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=28.64 E-value=80 Score=20.29 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=16.2
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 027657 127 QTGFIEREELKEMVLALLHESDLILSDDVIETIVD 161 (220)
Q Consensus 127 ~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (220)
..|+||++|+..+|. ...++++.++.++.
T Consensus 18 ~~G~lT~~eI~~~L~------~~~~~~e~id~i~~ 46 (82)
T PF03979_consen 18 KKGYLTYDEINDALP------EDDLDPEQIDEIYD 46 (82)
T ss_dssp HHSS-BHHHHHHH-S-------S---HHHHHHHHH
T ss_pred hcCcCCHHHHHHHcC------ccCCCHHHHHHHHH
Confidence 368899988888874 24466666666653
No 198
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=28.45 E-value=1.2e+02 Score=19.90 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHhcCCCCCCccc
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIE 132 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~ 132 (220)
+...++..||+++..+++..+.
T Consensus 56 SS~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 56 SSQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred cCHHHHHHHHHHHHhcCcccEE
Confidence 3467788888888877766543
No 199
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.79 E-value=2.4e+02 Score=20.55 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCCCCCcccHHHHHHH---HhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHH
Q 027657 39 VEALYELFKKLSSSIFDDGIIHKEEFQLA---LFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDK 115 (220)
Q Consensus 39 i~~l~~~F~~~d~~~~~~g~i~~~e~~~~---l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 115 (220)
+...--.|..+. .||.++..|...+ +...-.-+...+..+......-+...+++..|.+.+..-.......+-
T Consensus 29 lAa~~Llf~Vm~----ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~el 104 (148)
T COG4103 29 LAAAALLFHVME----ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLEL 104 (148)
T ss_pred HHHHHHHHHHHh----cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 333336677776 6788998886543 322222234445667666666666778888888887644433333334
Q ss_pred HHHHHHhcCCCCCCcccHHHH
Q 027657 116 IAFAFRLYDLRQTGFIEREEL 136 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~ 136 (220)
+..++.+-- -||.++.-|-
T Consensus 105 i~~mweIa~--ADg~l~e~Ed 123 (148)
T COG4103 105 IGLMWEIAY--ADGELDESED 123 (148)
T ss_pred HHHHHHHHH--ccccccHHHH
Confidence 444455442 3566666665
No 200
>PF14162 YozD: YozD-like protein
Probab=27.72 E-value=1.4e+02 Score=17.58 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 027657 130 FIEREELKEMVLALLHESDLILSDDVIETIVDKSF 164 (220)
Q Consensus 130 ~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f 164 (220)
.|+-+|+..++-.-+.+.|+.++++++.++..-.|
T Consensus 7 ~IDTEEIAefFy~eL~kRGyvP~e~El~eiADItF 41 (57)
T PF14162_consen 7 VIDTEEIAEFFYHELVKRGYVPTEEELEEIADITF 41 (57)
T ss_pred EecHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 57778888877666666788889888887774433
No 201
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.42 E-value=1.5e+02 Score=21.78 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCC
Q 027657 116 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILS 152 (220)
Q Consensus 116 ~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~ 152 (220)
+..-....|..+.+|||..|++.++-.+....+..++
T Consensus 71 L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P 107 (148)
T PF12486_consen 71 LADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVP 107 (148)
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCC
Confidence 4455666788888899999999988776444444443
No 202
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.16 E-value=1.4e+02 Score=21.17 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=35.9
Q ss_pred CCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCH
Q 027657 126 RQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDP 177 (220)
Q Consensus 126 d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~ 177 (220)
+..|.|+.+|=.++|.- ...++.++++.-...+|..-|+.+.|..-.
T Consensus 51 ~~~~~iTlqEa~qILnV-----~~~ln~eei~k~yehLFevNdkskGGSFYL 97 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNV-----KEPLNREEIEKRYEHLFEVNDKSKGGSFYL 97 (132)
T ss_pred cccccccHHHHhhHhCC-----CCCCCHHHHHHHHHHHHhccCcccCcceee
Confidence 33466999999888732 346888999999999999888887786433
No 203
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=26.89 E-value=1.4e+02 Score=20.61 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 173 GKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 173 g~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
..++-++...+|..+|.+++...+..
T Consensus 70 ~~ls~~e~~~ll~~~P~LikRPIv~~ 95 (113)
T cd03033 70 EALDEEEALALMIADPLLIRRPLMQV 95 (113)
T ss_pred cCCCHHHHHHHHHhCcceeeCCeEEE
Confidence 46799999999999999998875543
No 204
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=26.78 E-value=2e+02 Score=19.13 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcC-CCCCCCcCHHHHHHHHHh
Q 027657 134 EELKEMVLALLHESDLILSDDVIETIVDKSFSDAD-TNGDGKIDPEEWKEFVKK 186 (220)
Q Consensus 134 ~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d-~~~dg~Is~~ef~~~l~~ 186 (220)
+-|.++|..+++..|..++.+++..++..+....- --.+|.|+.+.|.+.=..
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~ 61 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEE 61 (90)
T ss_dssp HHHHHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHH
Confidence 45666777777777777777777766654433321 133467888777765433
No 205
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.54 E-value=39 Score=22.97 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHhChhhhhhcCCccch
Q 027657 130 FIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPYLK 200 (220)
Q Consensus 130 ~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~~l~~~~~~~~~~~~~~~~ 200 (220)
.++.+|+..++..+ +..+.. -+ .--...|...+......++-+++..+|..+|.+++...+..-.
T Consensus 32 p~s~~el~~~l~~~----~~~~~~-li-n~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~LikRPIi~~~~ 96 (110)
T PF03960_consen 32 PLSREELRELLSKL----GNGPDD-LI-NTRSKTYKELGKLKKDDLSDEELIELLLENPKLIKRPIIVDGK 96 (110)
T ss_dssp ---HHHHHHHHHHH----TSSGGG-GB--TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-SSEEEETT
T ss_pred CCCHHHHHHHHHHh----cccHHH-Hh-cCccchHhhhhhhhhhhhhhHHHHHHHHhChhheeCCEEEECC
Confidence 47778887777766 321110 00 0001112333311235689999999999999999876544433
No 206
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=25.79 E-value=2.8e+02 Score=22.15 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCc
Q 027657 34 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNG 92 (220)
Q Consensus 34 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g 92 (220)
|+++++..++++|+.+- .+| ++.++-...+... ....+.++.+.+.+.....|
T Consensus 200 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~s~rg 252 (255)
T PRK12461 200 FSSRAIRALKRAYKIIY----RSG-LSVQQAVAELELQ-QFESPEVEELIDFIKASKRG 252 (255)
T ss_pred CCHHHHHHHHHHHHHHH----hcC-CCHHHHHHHHHHh-ccCCHHHHHHHHHHHccCCC
Confidence 99999999999999985 334 4555544344332 12344556666666443333
No 207
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=25.42 E-value=75 Score=16.54 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.1
Q ss_pred CCCcCHHHHHHHHHhChhhhh
Q 027657 172 DGKIDPEEWKEFVKKNPSLIK 192 (220)
Q Consensus 172 dg~Is~~ef~~~l~~~~~~~~ 192 (220)
.|.|++++++.+..+-..+..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYE 22 (33)
T ss_pred CceecHHHHHHHHHHHHHHHH
Confidence 478999999998887655554
No 208
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=25.31 E-value=4.5e+02 Score=22.82 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCcccHHHHHHHHhcc-CCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhCCCCcHHHHHHHHHHhcCCCCCCc---c
Q 027657 56 DGIIHKEEFQLALFRN-KNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGF---I 131 (220)
Q Consensus 56 ~g~i~~~e~~~~l~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~---I 131 (220)
...+....|.++|... +.....++-.+-..+|-..++.|+.-||-.+-..+.. -..+.+-++.+..-+-|+ +
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP----w~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP----WKTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc----HHHHHHhhhhhhccCCceeEEe
Confidence 4456677777777442 2333445566667778888888887777655433331 223445566677778885 7
Q ss_pred cHHHHHHHHHHHhhhcC
Q 027657 132 EREELKEMVLALLHESD 148 (220)
Q Consensus 132 ~~~E~~~~l~~~~~~~~ 148 (220)
+++|++.-|++...++|
T Consensus 264 TYDEVk~RLqk~~~KpG 280 (563)
T KOG1785|consen 264 TYDEVKARLQKYIKKPG 280 (563)
T ss_pred eHHHHHHHHHHHhcCCC
Confidence 89999999998866654
No 209
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=24.90 E-value=1.4e+02 Score=21.89 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccHHHHHHHH
Q 027657 38 EVEALYELFKKLSSSIFDDGIIHKEEFQLAL 68 (220)
Q Consensus 38 ~i~~l~~~F~~~d~~~~~~g~i~~~e~~~~l 68 (220)
++..+-......|.. +.++|+.++++.++
T Consensus 67 ~Lq~L~~rL~~le~~--rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQ--RGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHHHHHHHHHh--cCCceeHHHHHHHH
Confidence 455555555555555 55556666666554
No 210
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=24.70 E-value=1.5e+02 Score=23.85 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHhhcCCCCCCCcCHHHHHH
Q 027657 130 FIEREELKEMVLAL-LHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 182 (220)
Q Consensus 130 ~I~~~E~~~~l~~~-~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~Is~~ef~~ 182 (220)
.++..++..+|..- ....|..++++++..+...+|..-....++.||+.+|.+
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 67888888888743 334578899999998888888765555678899999964
No 211
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=24.67 E-value=1.2e+02 Score=20.12 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=6.3
Q ss_pred CCCcccHHHHHH
Q 027657 55 DDGIIHKEEFQL 66 (220)
Q Consensus 55 ~~g~i~~~e~~~ 66 (220)
.||.++..|...
T Consensus 15 aDG~v~~~E~~~ 26 (111)
T cd07176 15 ADGDIDDAELQA 26 (111)
T ss_pred hccCCCHHHHHH
Confidence 355555555543
No 212
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.63 E-value=1.5e+02 Score=16.89 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 027657 128 TGFIEREELKEMVLALLHESDLILSDDVIETIV 160 (220)
Q Consensus 128 ~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~ 160 (220)
.|.|+ +++.++..+ ...|..+++..++.++
T Consensus 15 ~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLIS--EVKPLLDRL-QQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChh--hHHHHHHHH-HHcCcccCHHHHHHHH
Confidence 46676 666666665 5557888887766665
No 213
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=23.97 E-value=80 Score=18.02 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=19.6
Q ss_pred CCCCcchHHHHhhCCCCCCCCCCCHHHHHHHHH
Q 027657 12 TPGYEEPTVLAAETPCQSSSCSFTVCEVEALYE 44 (220)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 44 (220)
+++.+.+..++..+. ++..+|..++.
T Consensus 24 ~P~~~~~~~la~~~~-------l~~~qV~~WF~ 49 (56)
T smart00389 24 YPSREEREELAAKLG-------LSERQVKVWFQ 49 (56)
T ss_pred CCCHHHHHHHHHHHC-------cCHHHHHHhHH
Confidence 455677888888888 88888777664
No 214
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=23.81 E-value=1.8e+02 Score=20.50 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHHhChhhhhhcCCcc
Q 027657 173 GKIDPEEWKEFVKKNPSLIKNMTLPY 198 (220)
Q Consensus 173 g~Is~~ef~~~l~~~~~~~~~~~~~~ 198 (220)
..++-++...+|..+|.+++...+..
T Consensus 71 ~~ls~~e~i~lm~~~P~LIKRPIi~~ 96 (126)
T TIGR01616 71 DSIDEASALALMVSDPLLIRRPLMDL 96 (126)
T ss_pred ccCCHHHHHHHHHhCcCeEeCCEEEE
Confidence 46889999999999999999875543
No 215
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=22.61 E-value=2.2e+02 Score=18.31 Aligned_cols=76 Identities=7% Similarity=0.043 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhccCCCChHHHHHHHHHhcCCCCceeehHHHHHHHhhhC-CCCcHHHHHHHHHHhcCCCCCCcccHHH
Q 027657 59 IHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH-PHALVEDKIAFAFRLYDLRQTGFIEREE 135 (220)
Q Consensus 59 i~~~e~~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~F~~~D~d~~G~I~~~E 135 (220)
.+-..+..+..+.|...-.....++..+-..+.-.+.+++ +..++... .....-+++..-+.+||.+..|.++-..
T Consensus 9 ~~D~ki~~l~~~~G~~G~~~y~~ll~~iy~~~~y~~~~~~-~~~~a~~~~~~~~~v~~II~~~~LF~~~~~~iltS~~ 85 (87)
T PF14297_consen 9 FSDPKIRRLMAEYGCEGYGIYWYLLEYIYKQGGYYLWWDK-LFLIARKLGVSEEYVEEIINEYGLFDIEEYGILTSEG 85 (87)
T ss_pred ccCHHHHHHHHHcCCchHHHHHHHHHHHHcCCCeEeeHHH-HHHHHHHHCcCHHHHHHHHHHhCCcccCCCcEEechh
Confidence 3344455555555555555556666666666556678888 44444433 1222234444466778877766565543
No 216
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=22.09 E-value=2.8e+02 Score=23.54 Aligned_cols=39 Identities=10% Similarity=0.259 Sum_probs=26.7
Q ss_pred hhcCCCCCCCcCHHHHHH-----HHHhChhhhhhcCCccchhcc
Q 027657 165 SDADTNGDGKIDPEEWKE-----FVKKNPSLIKNMTLPYLKDIT 203 (220)
Q Consensus 165 ~~~d~~~dg~Is~~ef~~-----~l~~~~~~~~~~~~~~~~~~~ 203 (220)
..--...+|.++.++-.. +++++|.++..-+....+|+.
T Consensus 298 HaqIGkdeGyf~I~dVI~~i~~KMIrRHPHvF~d~qve~~~dv~ 341 (488)
T COG3956 298 HAQIGKDEGYFNINDVISGISEKMIRRHPHVFKDEQVEDSTDVL 341 (488)
T ss_pred HHhhcccCCeeeHHHHHHHHHHHHHHhCcccccccccccHHHHH
Confidence 333344568888888764 667799888877776666543
No 217
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=21.84 E-value=1.4e+02 Score=18.17 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 027657 130 FIEREELKEMVLALLHESDLILSDDVIETIV 160 (220)
Q Consensus 130 ~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~ 160 (220)
.|+.++|..+|..+ ...++.++++...
T Consensus 29 ~it~~DF~~Al~~~----kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKV----KPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTC----GGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 47777888877665 6667777666554
No 218
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=20.92 E-value=2.8e+02 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=7.9
Q ss_pred CceeehHHHHHHHhh
Q 027657 91 NGVIEFGEFVRSLGV 105 (220)
Q Consensus 91 ~g~i~~~ef~~~~~~ 105 (220)
.|.|+.++|..++..
T Consensus 39 ~G~Id~~e~kkav~~ 53 (215)
T PF09873_consen 39 PGKIDVEEFKKAVYS 53 (215)
T ss_pred CCcccHHHHHHHHHH
Confidence 455555555555543
No 219
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=20.39 E-value=1.5e+02 Score=17.83 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=14.9
Q ss_pred CCCcchHHHHhhCCCCCCCCCCCHHHHHHHHH
Q 027657 13 PGYEEPTVLAAETPCQSSSCSFTVCEVEALYE 44 (220)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 44 (220)
+....+..|...+. ++.++++.++.
T Consensus 23 L~E~DL~~L~~kS~-------ms~qqVr~WFa 47 (56)
T PF11569_consen 23 LQEEDLDELCDKSR-------MSYQQVRDWFA 47 (56)
T ss_dssp --TTHHHHHHHHTT---------HHHHHHHHH
T ss_pred ccHhhHHHHHHHHC-------CCHHHHHHHHH
Confidence 34466777777777 77777777664
No 220
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=1.9e+02 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 027657 111 LVEDKIAFAFRLYDLRQTGFIEREELKE 138 (220)
Q Consensus 111 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~ 138 (220)
.+..-+-.++++-|.|++|.++-+||.-
T Consensus 474 lpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 474 LPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3344455566666666666666666643
No 221
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=20.22 E-value=71 Score=18.32 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=7.8
Q ss_pred CCccccccCC
Q 027657 1 MGCVLTKKTK 10 (220)
Q Consensus 1 mg~~~s~~~~ 10 (220)
|||.+|+.-+
T Consensus 1 mgcggsrada 10 (53)
T PF06989_consen 1 MGCGGSRADA 10 (53)
T ss_pred CCCCcccccc
Confidence 8998887654
No 222
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=20.20 E-value=2e+02 Score=22.84 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.6
Q ss_pred CcccHHHHHHHHHHHh
Q 027657 129 GFIEREELKEMVLALL 144 (220)
Q Consensus 129 G~I~~~E~~~~l~~~~ 144 (220)
|.|+++||-..+..++
T Consensus 40 ~klsk~Efd~~~~~~L 55 (252)
T PF12767_consen 40 GKLSKEEFDKECRRIL 55 (252)
T ss_pred hccCHHHHHHHHHHHh
Confidence 4455555544444443
Done!