Query 027658
Match_columns 220
No_of_seqs 205 out of 1568
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.2E-39 2.5E-44 265.7 4.1 161 1-161 1-188 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 6.4E-35 1.4E-39 203.4 3.8 75 2-76 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 9E-32 1.9E-36 190.3 4.6 77 2-78 1-78 (83)
4 smart00432 MADS MADS domain. 100.0 4.6E-31 9.9E-36 173.9 3.7 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 2.5E-30 5.4E-35 170.5 3.3 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 8.3E-29 1.8E-33 158.1 -1.4 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 1.4E-19 3.1E-24 132.6 12.5 89 84-172 11-99 (100)
8 KOG0015 Regulator of arginine 99.8 4.2E-21 9.1E-26 160.7 1.9 74 2-75 63-145 (338)
9 COG5068 ARG80 Regulator of arg 99.5 4.8E-15 1E-19 129.7 2.4 67 1-67 81-147 (412)
10 PF06005 DUF904: Protein of un 95.1 0.23 5E-06 33.9 7.8 49 119-172 1-49 (72)
11 PF10584 Proteasome_A_N: Prote 87.8 0.13 2.7E-06 27.2 -0.4 14 43-56 3-16 (23)
12 PRK04098 sec-independent trans 87.4 0.37 8E-06 37.9 1.8 82 42-133 14-95 (158)
13 PRK15422 septal ring assembly 87.0 5.3 0.00012 27.6 7.1 43 119-166 1-43 (79)
14 PF08317 Spc7: Spc7 kinetochor 85.8 8 0.00017 34.0 9.6 60 114-173 201-262 (325)
15 COG3074 Uncharacterized protei 85.8 7.9 0.00017 26.2 7.2 45 119-168 1-45 (79)
16 PF01166 TSC22: TSC-22/dip/bun 85.4 2.4 5.3E-05 27.5 4.5 30 144-173 17-46 (59)
17 cd07429 Cby_like Chibby, a nuc 85.1 1.5 3.3E-05 32.3 3.9 25 149-173 73-97 (108)
18 smart00787 Spc7 Spc7 kinetocho 84.0 10 0.00022 33.2 9.4 60 113-172 195-256 (312)
19 PF06698 DUF1192: Protein of u 82.7 3.1 6.7E-05 27.3 4.2 32 110-141 12-43 (59)
20 KOG4797 Transcriptional regula 81.0 9.3 0.0002 28.1 6.6 26 144-169 70-95 (123)
21 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.4 25 0.00054 26.6 11.2 30 144-173 101-130 (132)
22 KOG4252 GTP-binding protein [S 78.6 23 0.0005 28.9 8.7 29 39-73 91-119 (246)
23 PRK13169 DNA replication intia 77.7 20 0.00042 26.6 7.6 49 121-174 7-55 (110)
24 PF06156 DUF972: Protein of un 77.1 21 0.00045 26.3 7.6 49 121-174 7-55 (107)
25 PF10504 DUF2452: Protein of u 75.3 18 0.00039 28.5 7.2 44 120-163 28-74 (159)
26 PRK10884 SH3 domain-containing 74.9 46 0.001 27.4 11.2 31 142-172 140-170 (206)
27 cd00187 TOP4c DNA Topoisomeras 74.5 41 0.0009 31.0 10.5 60 7-73 257-328 (445)
28 PF10226 DUF2216: Uncharacteri 73.0 24 0.00051 28.7 7.5 33 140-172 47-79 (195)
29 PF07106 TBPIP: Tat binding pr 70.6 37 0.0008 26.7 8.2 56 87-146 81-136 (169)
30 PRK13729 conjugal transfer pil 70.1 94 0.002 29.0 11.6 30 144-173 93-122 (475)
31 KOG4643 Uncharacterized coiled 67.5 42 0.00091 34.1 9.2 43 131-173 283-326 (1195)
32 PF04849 HAP1_N: HAP1 N-termin 66.5 44 0.00095 29.3 8.3 50 124-173 215-266 (306)
33 PF09744 Jnk-SapK_ap_N: JNK_SA 66.2 59 0.0013 25.6 8.4 29 145-173 86-114 (158)
34 PHA02592 52 DNA topisomerase I 66.2 77 0.0017 29.2 10.3 29 42-72 298-326 (439)
35 COG4467 Regulator of replicati 66.2 49 0.0011 24.4 7.2 48 121-173 7-54 (114)
36 PF14662 CCDC155: Coiled-coil 64.2 78 0.0017 25.8 11.7 18 121-138 69-86 (193)
37 KOG1962 B-cell receptor-associ 64.2 50 0.0011 27.4 7.9 56 119-174 155-212 (216)
38 KOG4797 Transcriptional regula 62.8 59 0.0013 23.9 7.5 46 128-173 47-92 (123)
39 TIGR02449 conserved hypothetic 62.2 44 0.00096 22.3 7.6 51 123-173 1-53 (65)
40 PF06156 DUF972: Protein of un 61.8 60 0.0013 23.8 7.2 40 133-173 8-47 (107)
41 PRK10884 SH3 domain-containing 61.8 58 0.0013 26.8 7.9 28 146-173 137-164 (206)
42 PRK11637 AmiB activator; Provi 60.4 1.3E+02 0.0029 27.2 12.5 80 85-173 47-128 (428)
43 PRK13824 replication initiatio 58.5 44 0.00096 30.4 7.3 97 34-141 103-212 (404)
44 TIGR02338 gimC_beta prefoldin, 58.2 70 0.0015 23.3 12.0 45 127-172 61-105 (110)
45 PF14645 Chibby: Chibby family 56.8 19 0.0004 26.9 3.9 25 149-173 72-96 (116)
46 PF15254 CCDC14: Coiled-coil d 55.6 1.9E+02 0.0042 28.7 11.2 86 87-173 389-480 (861)
47 smart00338 BRLZ basic region l 53.1 61 0.0013 21.0 5.8 35 135-173 17-51 (65)
48 TIGR03752 conj_TIGR03752 integ 52.8 1.8E+02 0.004 27.1 10.2 72 88-172 69-140 (472)
49 PRK01371 sec-independent trans 51.9 16 0.00035 28.1 2.9 14 43-57 15-28 (137)
50 PF10491 Nrf1_DNA-bind: NLS-bi 50.6 15 0.00033 30.2 2.7 47 26-72 35-88 (214)
51 TIGR02894 DNA_bind_RsfA transc 49.9 1.2E+02 0.0026 24.0 7.5 22 87-108 106-127 (161)
52 PF00170 bZIP_1: bZIP transcri 49.5 70 0.0015 20.7 6.0 34 135-172 17-50 (64)
53 TIGR02231 conserved hypothetic 49.3 2.3E+02 0.0049 26.5 11.4 50 118-168 123-172 (525)
54 TIGR01478 STEVOR variant surfa 48.6 45 0.00098 28.9 5.3 44 7-71 25-69 (295)
55 PF07716 bZIP_2: Basic region 48.5 66 0.0014 20.1 5.9 35 135-173 16-50 (54)
56 PF09151 DUF1936: Domain of un 47.8 16 0.00034 20.6 1.7 24 34-57 2-25 (36)
57 PF09941 DUF2173: Uncharacteri 47.8 26 0.00056 25.9 3.3 27 32-59 3-29 (108)
58 COG0139 HisI Phosphoribosyl-AM 46.7 8.9 0.00019 28.3 0.7 27 27-53 69-95 (111)
59 PF14009 DUF4228: Domain of un 46.7 18 0.00039 28.0 2.6 32 40-72 14-46 (181)
60 KOG0184 20S proteasome, regula 43.2 12 0.00026 31.2 1.0 24 36-59 3-28 (254)
61 PF11629 Mst1_SARAH: C termina 42.8 75 0.0016 19.9 4.3 19 115-133 4-22 (49)
62 COG2433 Uncharacterized conser 42.7 3.2E+02 0.007 26.4 11.7 51 122-172 450-505 (652)
63 cd01109 HTH_YyaN Helix-Turn-He 42.6 1.1E+02 0.0024 22.1 6.2 53 118-171 57-109 (113)
64 PRK13169 DNA replication intia 42.0 1.4E+02 0.003 22.0 7.2 41 132-173 7-47 (110)
65 PF09278 MerR-DNA-bind: MerR, 41.3 94 0.002 19.8 5.3 44 118-162 14-57 (65)
66 PF10224 DUF2205: Predicted co 41.2 1.2E+02 0.0026 21.1 6.8 26 149-174 38-63 (80)
67 KOG0183 20S proteasome, regula 41.1 14 0.00031 30.6 1.1 20 41-60 4-25 (249)
68 TIGR00606 rad50 rad50. This fa 40.0 4.5E+02 0.0098 27.8 12.1 55 118-172 821-881 (1311)
69 PF05529 Bap31: B-cell recepto 39.9 1.9E+02 0.0041 23.0 7.6 52 122-173 125-186 (192)
70 PRK00888 ftsB cell division pr 39.8 90 0.002 22.7 5.2 24 149-172 35-58 (105)
71 PF01502 PRA-CH: Phosphoribosy 39.0 9.1 0.0002 26.3 -0.2 37 17-53 18-63 (75)
72 PF04977 DivIC: Septum formati 38.3 74 0.0016 21.1 4.3 28 146-173 22-49 (80)
73 COG3853 TelA Uncharacterized p 38.3 1.1E+02 0.0024 27.7 6.4 43 131-173 221-265 (386)
74 KOG0804 Cytoplasmic Zn-finger 38.0 3.4E+02 0.0073 25.3 10.7 30 140-169 381-410 (493)
75 PF13870 DUF4201: Domain of un 37.8 2E+02 0.0043 22.6 12.7 84 87-173 8-102 (177)
76 TIGR01069 mutS2 MutS2 family p 37.4 4.3E+02 0.0093 26.3 12.9 24 123-146 540-563 (771)
77 PF03980 Nnf1: Nnf1 ; InterPr 37.2 1.3E+02 0.0029 21.6 5.8 34 140-173 72-105 (109)
78 PLN03128 DNA topoisomerase 2; 36.9 3.6E+02 0.0078 28.2 10.5 27 44-72 961-987 (1135)
79 PF08614 ATG16: Autophagy prot 36.4 2.2E+02 0.0049 22.8 11.0 48 126-173 134-183 (194)
80 PF14915 CCDC144C: CCDC144C pr 36.3 3E+02 0.0064 24.1 9.8 79 90-174 4-82 (305)
81 KOG4005 Transcription factor X 36.2 2.6E+02 0.0056 23.7 7.8 29 144-172 107-135 (292)
82 COG4831 Roadblock/LC7 domain [ 36.0 36 0.00078 24.5 2.4 30 30-60 3-32 (109)
83 PF10211 Ax_dynein_light: Axon 35.6 2.3E+02 0.0051 22.8 10.7 21 152-172 167-187 (189)
84 PF11365 DUF3166: Protein of u 35.5 99 0.0021 22.3 4.6 31 144-174 11-41 (96)
85 PF06005 DUF904: Protein of un 35.2 1.4E+02 0.0031 20.2 5.4 22 147-168 17-38 (72)
86 KOG0971 Microtubule-associated 35.1 5.1E+02 0.011 26.5 12.3 87 86-172 326-427 (1243)
87 PRK10803 tol-pal system protei 34.2 39 0.00086 28.7 2.9 35 35-70 12-46 (263)
88 PF10623 PilI: Plasmid conjuga 33.6 40 0.00087 23.3 2.2 31 42-72 8-41 (83)
89 PF09789 DUF2353: Uncharacteri 33.6 3.4E+02 0.0073 24.0 11.4 44 130-174 69-112 (319)
90 KOG3612 PHD Zn-finger protein 33.5 2.8E+02 0.0062 26.3 8.4 68 35-107 404-475 (588)
91 PF06785 UPF0242: Uncharacteri 33.5 3.2E+02 0.007 24.4 8.3 43 129-172 130-172 (401)
92 cd02980 TRX_Fd_family Thioredo 33.4 45 0.00097 22.0 2.6 30 39-69 47-77 (77)
93 KOG0930 Guanine nucleotide exc 32.8 1.1E+02 0.0023 26.7 5.2 43 116-167 8-50 (395)
94 PLN03194 putative disease resi 32.7 2.6E+02 0.0057 22.7 7.2 30 39-68 79-108 (187)
95 KOG4378 Nuclear protein COP1 [ 32.5 2.8E+02 0.0061 26.3 8.1 23 4-26 521-543 (673)
96 PF03428 RP-C: Replication pro 32.4 1.1E+02 0.0024 24.5 5.0 62 41-110 96-169 (177)
97 PRK00409 recombination and DNA 32.4 5.2E+02 0.011 25.8 13.0 6 44-49 465-470 (782)
98 PF05812 Herpes_BLRF2: Herpesv 32.1 78 0.0017 23.7 3.7 26 149-174 4-29 (118)
99 KOG4637 Adaptor for phosphoino 31.7 38 0.00082 30.5 2.4 40 33-74 367-413 (464)
100 PLN02939 transferase, transfer 31.4 1.4E+02 0.0031 30.5 6.5 39 127-166 363-401 (977)
101 PF05812 Herpes_BLRF2: Herpesv 31.1 2.3E+02 0.0049 21.3 8.3 57 86-142 4-64 (118)
102 cd01107 HTH_BmrR Helix-Turn-He 31.0 2E+02 0.0044 20.6 6.2 47 118-170 58-104 (108)
103 COG4917 EutP Ethanolamine util 30.6 32 0.00069 26.4 1.5 25 35-59 59-83 (148)
104 PHA03162 hypothetical protein; 30.6 2.5E+02 0.0054 21.5 8.1 58 85-142 13-74 (135)
105 PHA03155 hypothetical protein; 30.5 82 0.0018 23.4 3.6 25 150-174 10-34 (115)
106 PF07106 TBPIP: Tat binding pr 30.4 2.6E+02 0.0057 21.7 9.7 52 90-142 114-165 (169)
107 KOG0250 DNA repair protein RAD 30.2 6.4E+02 0.014 26.2 11.8 60 43-109 620-685 (1074)
108 PF09798 LCD1: DNA damage chec 29.6 3E+02 0.0065 26.9 8.1 51 123-173 5-58 (654)
109 PF07676 PD40: WD40-like Beta 29.3 45 0.00097 18.9 1.8 20 41-60 9-28 (39)
110 PHA03155 hypothetical protein; 29.3 2.4E+02 0.0052 21.0 8.2 57 86-142 9-65 (115)
111 PHA03162 hypothetical protein; 28.9 87 0.0019 23.9 3.6 25 150-174 15-39 (135)
112 TIGR01950 SoxR redox-sensitive 28.5 1.5E+02 0.0032 22.7 5.0 55 118-172 57-111 (142)
113 PF06937 EURL: EURL protein; 28.4 2.4E+02 0.0053 24.3 6.5 32 109-140 209-240 (285)
114 cd03064 TRX_Fd_NuoE TRX-like [ 28.3 55 0.0012 22.0 2.3 28 39-69 52-80 (80)
115 TIGR02976 phageshock_pspB phag 28.0 1.2E+02 0.0027 20.7 3.9 43 65-107 22-64 (75)
116 smart00340 HALZ homeobox assoc 27.8 1.4E+02 0.0031 18.1 3.7 25 150-174 7-31 (44)
117 TIGR02894 DNA_bind_RsfA transc 27.7 3.1E+02 0.0067 21.7 11.6 58 116-173 77-136 (161)
118 smart00338 BRLZ basic region l 27.1 1.8E+02 0.0039 18.7 5.3 27 145-171 37-63 (65)
119 cd04787 HTH_HMRTR_unk Helix-Tu 27.1 2.4E+02 0.0051 21.1 5.9 54 118-172 57-110 (133)
120 PRK11637 AmiB activator; Provi 26.9 4.8E+02 0.01 23.6 11.8 17 146-162 108-124 (428)
121 PF04111 APG6: Autophagy prote 26.6 4.4E+02 0.0094 23.1 10.6 6 199-204 154-159 (314)
122 TIGR02209 ftsL_broad cell divi 26.2 2.1E+02 0.0045 19.3 5.0 29 145-173 28-56 (85)
123 COG5000 NtrY Signal transducti 26.1 45 0.00098 32.1 2.0 22 36-57 374-395 (712)
124 cd01282 HTH_MerR-like_sg3 Heli 26.0 2.4E+02 0.0052 20.4 5.6 50 119-169 57-109 (112)
125 TIGR02051 MerR Hg(II)-responsi 26.0 2.7E+02 0.0059 20.5 6.2 52 118-172 56-107 (124)
126 COG5185 HEC1 Protein involved 25.9 5.6E+02 0.012 24.1 8.8 60 88-147 333-396 (622)
127 PF10337 DUF2422: Protein of u 25.8 3.8E+02 0.0083 24.5 8.1 50 87-136 257-307 (459)
128 PF11232 Med25: Mediator compl 25.6 54 0.0012 25.7 2.1 23 37-59 109-132 (152)
129 TIGR02047 CadR-PbrR Cd(II)/Pb( 25.4 2.5E+02 0.0055 20.8 5.7 54 118-172 57-110 (127)
130 PF05700 BCAS2: Breast carcino 25.3 3.8E+02 0.0083 22.0 9.6 15 57-71 60-74 (221)
131 KOG3684 Ca2+-activated K+ chan 25.3 5.6E+02 0.012 23.9 11.2 63 101-167 405-467 (489)
132 cd04769 HTH_MerR2 Helix-Turn-H 25.2 2.7E+02 0.0059 20.2 7.1 14 118-131 56-69 (116)
133 PF07888 CALCOCO1: Calcium bin 24.9 6.1E+02 0.013 24.2 10.5 29 31-60 78-113 (546)
134 PF07956 DUF1690: Protein of U 24.9 3.2E+02 0.007 21.0 9.0 48 47-99 1-49 (142)
135 PF10211 Ax_dynein_light: Axon 24.8 3.7E+02 0.008 21.6 11.1 20 142-161 164-183 (189)
136 PF07798 DUF1640: Protein of u 24.7 3.5E+02 0.0076 21.3 10.9 15 161-175 137-151 (177)
137 PF02183 HALZ: Homeobox associ 24.7 1.7E+02 0.0038 17.8 5.2 31 143-173 7-37 (45)
138 PF07438 DUF1514: Protein of u 24.6 1.2E+02 0.0027 20.1 3.3 42 97-138 23-64 (66)
139 KOG0933 Structural maintenance 24.6 8.1E+02 0.017 25.5 10.8 53 47-108 654-707 (1174)
140 cd04776 HTH_GnyR Helix-Turn-He 24.3 2.9E+02 0.0063 20.2 6.4 27 144-170 83-109 (118)
141 PRK09514 zntR zinc-responsive 23.8 2.5E+02 0.0054 21.3 5.5 54 118-171 58-111 (140)
142 PF05483 SCP-1: Synaptonemal c 23.8 7.1E+02 0.015 24.6 9.3 18 157-174 610-627 (786)
143 PF04880 NUDE_C: NUDE protein, 23.8 1.8E+02 0.0039 23.1 4.8 13 124-136 2-14 (166)
144 PF09730 BicD: Microtubule-ass 23.7 7.3E+02 0.016 24.6 10.7 21 153-173 126-146 (717)
145 cd01106 HTH_TipAL-Mta Helix-Tu 23.6 2.7E+02 0.0059 19.6 6.0 15 118-132 57-71 (103)
146 COG5068 ARG80 Regulator of arg 23.3 48 0.001 30.1 1.5 58 8-71 18-76 (412)
147 PF14723 SSFA2_C: Sperm-specif 23.1 87 0.0019 25.1 2.8 18 123-140 160-177 (179)
148 cd04790 HTH_Cfa-like_unk Helix 23.1 2.9E+02 0.0063 21.8 5.9 46 118-170 58-103 (172)
149 PF15397 DUF4618: Domain of un 23.1 4.8E+02 0.01 22.3 8.2 33 142-174 187-219 (258)
150 PF04566 RNA_pol_Rpb2_4: RNA p 23.1 27 0.00058 23.0 -0.1 31 22-54 23-54 (63)
151 PHA02109 hypothetical protein 23.0 2.5E+02 0.0054 22.6 5.3 42 109-162 178-221 (233)
152 PF12537 DUF3735: Protein of u 23.0 1.6E+02 0.0035 19.7 3.8 25 121-145 47-71 (72)
153 PF06020 Roughex: Drosophila r 22.8 41 0.00089 29.2 1.0 16 36-51 183-198 (334)
154 PLN02372 violaxanthin de-epoxi 22.8 6.1E+02 0.013 23.4 12.7 28 121-148 378-405 (455)
155 PRK09413 IS2 repressor TnpA; R 22.7 2.4E+02 0.0052 20.7 5.1 27 146-172 76-102 (121)
156 COG1382 GimC Prefoldin, chaper 22.6 3.4E+02 0.0073 20.4 12.5 41 132-173 69-109 (119)
157 PF02151 UVR: UvrB/uvrC motif; 22.6 1.6E+02 0.0036 16.7 4.0 32 124-155 4-35 (36)
158 KOG4445 Uncharacterized conser 22.5 3.3E+02 0.0071 24.0 6.3 93 41-142 118-219 (368)
159 PF01920 Prefoldin_2: Prefoldi 22.5 2.8E+02 0.006 19.3 8.5 28 146-173 74-101 (106)
160 KOG3841 TEF-1 and related tran 22.1 98 0.0021 28.0 3.2 40 45-90 101-141 (455)
161 PF14282 FlxA: FlxA-like prote 21.9 3.2E+02 0.0068 19.8 9.3 25 141-165 51-75 (106)
162 PRK15002 redox-sensitivie tran 21.8 2.7E+02 0.0058 21.7 5.4 54 118-171 67-120 (154)
163 PF04697 Pinin_SDK_N: pinin/SD 21.7 1.8E+02 0.0038 22.2 4.0 36 87-122 5-40 (134)
164 TIGR03017 EpsF chain length de 21.6 6E+02 0.013 22.8 10.2 71 62-134 150-227 (444)
165 PTZ00108 DNA topoisomerase 2-l 21.6 1E+03 0.022 25.7 10.7 122 45-170 963-1154(1388)
166 TIGR01916 F420_cofE F420-0:gam 21.6 60 0.0013 27.5 1.7 27 34-60 134-160 (243)
167 cd03063 TRX_Fd_FDH_beta TRX-li 21.5 1.1E+02 0.0024 21.7 2.9 36 38-73 44-81 (92)
168 PF06667 PspB: Phage shock pro 21.1 2E+02 0.0044 19.7 3.9 23 85-107 42-64 (75)
169 PF04945 YHS: YHS domain; Int 21.1 64 0.0014 19.5 1.4 25 39-63 6-33 (47)
170 cd08888 SRPBCC_PITPNA-B_like L 21.0 1.2E+02 0.0025 26.0 3.3 33 107-139 223-257 (258)
171 PRK13923 putative spore coat p 21.0 3E+02 0.0064 22.0 5.4 9 116-124 100-108 (170)
172 COG5179 TAF1 Transcription ini 20.9 1E+02 0.0022 30.0 3.1 48 26-74 446-493 (968)
173 cd04783 HTH_MerR1 Helix-Turn-H 20.9 3.5E+02 0.0076 19.9 6.3 51 119-172 58-108 (126)
174 PF04873 EIN3: Ethylene insens 20.7 33 0.00071 30.7 0.0 43 21-63 49-92 (354)
175 PF12018 DUF3508: Domain of un 20.7 56 0.0012 28.1 1.4 33 19-61 210-242 (281)
176 PF04999 FtsL: Cell division p 20.6 2.9E+02 0.0063 19.2 5.0 30 144-173 38-67 (97)
177 COG1579 Zn-ribbon protein, pos 20.3 5.3E+02 0.011 21.8 11.7 23 119-141 86-108 (239)
178 PF07558 Shugoshin_N: Shugoshi 20.2 1.2E+02 0.0026 18.6 2.4 31 141-171 14-44 (46)
179 COG4467 Regulator of replicati 20.1 2.1E+02 0.0045 21.1 4.0 28 146-173 20-47 (114)
180 PRK01470 tatA twin arginine tr 20.1 25 0.00053 22.3 -0.7 31 43-75 14-44 (51)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.2e-39 Score=265.70 Aligned_cols=161 Identities=49% Similarity=0.685 Sum_probs=130.4
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchh--hHHHHHHhhcccccccC
Q 027658 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLKHTKDTRN 78 (220)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s--~~~IleRY~~~~~~~~~ 78 (220)
|||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++++ |.+|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999985 99999999987665543
Q ss_pred CCCCchhh-H-------------------HHHHHHHHhHHHHHHHHHHH---hhhhhCCCCCCCCH-HHHHHHHHHHHHH
Q 027658 79 KQQPTEQN-M-------------------QHLKHEAANMVKKIELLEVS---KRKLLGEGLASCTL-EELQQIERQLEKS 134 (220)
Q Consensus 79 ~~~~~~~~-~-------------------q~l~~e~~kL~~kie~le~~---~r~l~Ge~L~~Ls~-~EL~~LE~~Le~~ 134 (220)
........ . +.+......+....+.+... .+++.|+++.++++ .+|..++.+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 33221110 0 11334455556666665543 78899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027658 135 VSNIRARKNQVFNEQIA-QLKEKGKVLE 161 (220)
Q Consensus 135 L~~IR~RK~~ll~~qi~-~lk~ke~~l~ 161 (220)
+..+|..+...+.+++. .++.++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE 188 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence 99999999888887775 4444444333
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=6.4e-35 Score=203.44 Aligned_cols=75 Identities=69% Similarity=0.992 Sum_probs=72.5
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcccccc
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDT 76 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~ 76 (220)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+||++++||+||.+.++..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987653
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=9e-32 Score=190.29 Aligned_cols=77 Identities=53% Similarity=0.737 Sum_probs=72.4
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchh-hHHHHHHhhcccccccC
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRN 78 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s-~~~IleRY~~~~~~~~~ 78 (220)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +..+|++|...+.....
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK 78 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence 899999999999999999999999999999999999999999999999999999988875 99999999988765543
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=4.6e-31 Score=173.93 Aligned_cols=59 Identities=75% Similarity=1.058 Sum_probs=57.9
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccch
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~ 60 (220)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999886
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=2.5e-30 Score=170.54 Aligned_cols=59 Identities=80% Similarity=1.078 Sum_probs=57.7
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccch
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~ 60 (220)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=8.3e-29 Score=158.06 Aligned_cols=51 Identities=63% Similarity=0.991 Sum_probs=47.1
Q ss_pred eeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccc
Q 027658 9 RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 59 (220)
Q Consensus 9 k~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s 59 (220)
|+|+|++.|++||+|||.||||||.|||+||||+||+|||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999987
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.83 E-value=1.4e-19 Score=132.57 Aligned_cols=89 Identities=42% Similarity=0.610 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAE 163 (220)
Q Consensus 84 ~~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~ee 163 (220)
..+.+.|+.++.+|+.+++.|+...|+++|++|++||++||+.||.+|+.+|.+||+||.+++.++|+.|++|+..|.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027658 164 NTRLEEKCG 172 (220)
Q Consensus 164 N~~L~~~~~ 172 (220)
|..|+.++.
T Consensus 91 n~~L~~~~~ 99 (100)
T PF01486_consen 91 NNQLRQKIE 99 (100)
T ss_pred HHHHHHHhc
Confidence 999999876
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.81 E-value=4.2e-21 Score=160.72 Aligned_cols=74 Identities=38% Similarity=0.566 Sum_probs=65.9
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhH---------HHHHHhhcc
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQ---------ETIERYLKH 72 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~---------~IleRY~~~ 72 (220)
||.||+|++|+|+..|.|||||||.|+||||+|||||.|.+|-|+|.|.+|-+|.|++|.++ ++|.-..+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999997544 455555555
Q ss_pred ccc
Q 027658 73 TKD 75 (220)
Q Consensus 73 ~~~ 75 (220)
+..
T Consensus 143 pd~ 145 (338)
T KOG0015|consen 143 PDT 145 (338)
T ss_pred CCC
Confidence 543
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.51 E-value=4.8e-15 Score=129.70 Aligned_cols=67 Identities=39% Similarity=0.618 Sum_probs=63.0
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHH
Q 027658 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIE 67 (220)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~Ile 67 (220)
|||+|+.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|++|..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999986555543
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.07 E-value=0.23 Score=33.93 Aligned_cols=49 Identities=33% Similarity=0.503 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+|++.|.+||..+..++..| .++..+++.|+.+...|.++|..|.....
T Consensus 1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47889999999999999998 45667777888876666565555555443
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=87.82 E-value=0.13 Score=27.18 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=11.3
Q ss_pred eeeeeeCCCCcccc
Q 027658 43 VAVIIFSPRGKLSE 56 (220)
Q Consensus 43 valivfs~~gkl~~ 56 (220)
..+.+|||.|++|.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 45678999999985
No 12
>PRK04098 sec-independent translocase; Provisional
Probab=87.38 E-value=0.37 Score=37.91 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=40.6
Q ss_pred ceeeeeeCCCCccccccchhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCH
Q 027658 42 EVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTL 121 (220)
Q Consensus 42 ~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~ 121 (220)
=||||||+|. |+++.+- .+-..+..|++........-. .+-.+..++.++.+.+..++......|. .+++
T Consensus 14 vVaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~~~~k~~l~-~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~ 83 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV-DIAKFFKAVKKTINDAKSTLD-KEINIEEIKEEALKYKKEFESAVESLKK-------KLKF 83 (158)
T ss_pred HHHHhhcCch-HHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccCh
Confidence 3899999994 8776644 344445555544322111000 0112334555555555555554443331 2566
Q ss_pred HHHHHHHHHHHH
Q 027658 122 EELQQIERQLEK 133 (220)
Q Consensus 122 ~EL~~LE~~Le~ 133 (220)
++|.++-.-+..
T Consensus 84 eel~~~~~~~~~ 95 (158)
T PRK04098 84 EELDDLKITAEN 95 (158)
T ss_pred HHHHHHhhhhhh
Confidence 666666443333
No 13
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.04 E-value=5.3 Score=27.63 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 166 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~ 166 (220)
+|++=|.+||..+..++..| .++.=+|++||.|...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777899999999999888 67777888888876666664433
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.76 E-value=8 Score=33.98 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN--EQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~--~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
..++.++.++|..+...|...-..|..+|..+-. .+.+.+..+...+.++-..+...+..
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998888877766543 45555555555555555555555443
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.76 E-value=7.9 Score=26.16 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 168 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~ 168 (220)
+|++=|..||..+..++..| .|+.=+|++||.|...|..|-..++
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 46677788888888887776 5666677777777665554444333
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.43 E-value=2.4 Score=27.54 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.+.++|..|..+...|+.||..|+..+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567888999999999999999999875543
No 17
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=85.09 E-value=1.5 Score=32.31 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 149 QIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 149 qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
++..+|++.+.|+|||+.|+-|++.
T Consensus 73 e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999988774
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.02 E-value=10 Score=33.25 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 113 GEGLASCTLEELQQIERQLEKSVSNIRARKNQVFN--EQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 113 Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~--~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
-++++.|+.++|..+...|......|...+..+-. ++...+..+.....++-..+...+.
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999888777666433 4555555544444444444444444
No 19
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=82.74 E-value=3.1 Score=27.25 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.2
Q ss_pred hhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027658 110 KLLGEGLASCTLEELQQIERQLEKSVSNIRAR 141 (220)
Q Consensus 110 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~R 141 (220)
+..|++|+.||++||..--..|+.-+.++++-
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999887777777776653
No 20
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.05 E-value=9.3 Score=28.08 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
+.+.++|..|-.+...|++||..|+.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666667766654
No 21
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.36 E-value=25 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
..+..++..++.+...|..+|..|..+++.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999999875
No 22
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=78.60 E-value=23 Score=28.86 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=19.9
Q ss_pred CCcceeeeeeCCCCccccccchhhHHHHHHhhccc
Q 027658 39 CDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT 73 (220)
Q Consensus 39 Cda~valivfs~~gkl~~~~s~s~~~IleRY~~~~ 73 (220)
-||.+|++|||.+++- |.+.+++=|.+..
T Consensus 91 rgaqa~vLVFSTTDr~------SFea~~~w~~kv~ 119 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY------SFEATLEWYNKVQ 119 (246)
T ss_pred ccccceEEEEecccHH------HHHHHHHHHHHHH
Confidence 5899999999998652 3455666555543
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=77.75 E-value=20 Score=26.57 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 121 ~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
++.+.+||.+|...+..+..=|. ++..+=+....|.-||..|+.++...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888777765443 34456666777888888888888863
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.13 E-value=21 Score=26.28 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 121 ~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
++.+.+||.+|...+..|.+=|. ++..|=+.-..|.-||..|+.++...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~-----~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKK-----QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776655443 33455555666777888888777753
No 25
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=75.34 E-value=18 Score=28.51 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 027658 120 TLEELQQIERQLEKSVSNIRAR---KNQVFNEQIAQLKEKGKVLEAE 163 (220)
Q Consensus 120 s~~EL~~LE~~Le~~L~~IR~R---K~~ll~~qi~~lk~ke~~l~ee 163 (220)
+..||-.|-.+++.+...+|++ |-.++.+||..|+++-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887 5667888999999886666553
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.88 E-value=46 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 142 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 142 K~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
.++-+.+++..++.+...|..+|..++....
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777777777777765544
No 27
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=74.51 E-value=41 Score=31.03 Aligned_cols=60 Identities=23% Similarity=0.532 Sum_probs=37.1
Q ss_pred ceeeecCCCCc-ccccc---ccc-------cchhhhhh-hhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhccc
Q 027658 7 QMRRIENATSR-QVTFS---KRR-------NGLLKKAF-ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT 73 (220)
Q Consensus 7 ~ik~Ien~~~R-~vtfs---KRr-------~GL~KKA~-ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~ 73 (220)
.|.-|.|.+.| .|.|- ||. .+|+|+-. +-++-| -+++|.++|++..| ++.+||..|..+-
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~---~l~~iL~~f~~~R 328 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL---NLKEILQEFLDHR 328 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe---CHHHHHHHHHHHH
Confidence 36666777766 34442 332 25554331 123333 67788889999888 6789999887653
No 28
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=72.95 E-value=24 Score=28.66 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 140 ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 140 ~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
.|+-|....+|..||.-.+.|+++|..|+.-+.
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666777777777888888888887665
No 29
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.63 E-value=37 Score=26.67 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll 146 (220)
+..++.++..++.++..++..+..+. ..++.+||...-..|+.-+..+.+|-..+-
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444443 334666666666666666666555544443
No 30
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.10 E-value=94 Score=28.96 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+++..+...++.|...+..||..|+.++++
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455566667777888899999999999864
No 31
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.53 E-value=42 Score=34.06 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 131 LEKSVSNIRARKNQ-VFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 131 Le~~L~~IR~RK~~-ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
|+.-|.+.|+|-+. -+..+|-.+++|...+..++...+++.+.
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~ktee 326 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEE 326 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44455555555433 22345556666666666666666666655
No 32
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.47 E-value=44 Score=29.27 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 124 LQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 124 L~~LE~~Le~~L~~IR~RK~~l--l~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+..|...|............++ +..+|-.++++.+.+.-||..|...+.+
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3445555555444444444443 4467888888999999999999888775
No 33
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.22 E-value=59 Score=25.61 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.+..+...|..+...|+.+|..|..++..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555667777888888888888877765
No 34
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=66.16 E-value=77 Score=29.23 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=22.6
Q ss_pred ceeeeeeCCCCccccccchhhHHHHHHhhcc
Q 027658 42 EVAVIIFSPRGKLSEFASSSMQETIERYLKH 72 (220)
Q Consensus 42 ~valivfs~~gkl~~~~s~s~~~IleRY~~~ 72 (220)
-+-+++|+++|++..|.+ +.+||..|..+
T Consensus 298 ~~Nm~~~d~~g~~~~~~~--~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYEN--AEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecCC--HHHHHHHHHHH
Confidence 377888999999888844 68888888664
No 35
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=66.15 E-value=49 Score=24.36 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 121 ~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
++.+.+||.+|-..+..|-.-|.+ +..|=.....|.=||..|++++..
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~-----l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH-----LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 467788888888888777665543 334555667778888889988887
No 36
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.22 E-value=78 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027658 121 LEELQQIERQLEKSVSNI 138 (220)
Q Consensus 121 ~~EL~~LE~~Le~~L~~I 138 (220)
+++|..+-..|+..=..+
T Consensus 69 ledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 37
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=64.16 E-value=50 Score=27.41 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 119 CTLEELQQIERQLEKSVSNIRARK--NQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK--~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
...+|+..|+..++..-....... ..-+..|.+.+...-..|.++|+.|+.++...
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 445677888888777766664443 34566788888888899999999999998753
No 38
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=62.77 E-value=59 Score=23.95 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 128 ERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 128 E~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.+.++.++.-|+..-+-.+.++++.||.+.+.|.+.|..|......
T Consensus 47 DNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~l 92 (123)
T KOG4797|consen 47 DNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSL 92 (123)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777899999999999999999999877654
No 39
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=62.23 E-value=44 Score=22.28 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 123 ELQQIERQLEKSVSNIRARK--NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 123 EL~~LE~~Le~~L~~IR~RK--~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
||+.|+..|+.-+.....=+ +.++.++...+...-..|.+.|..-+.++++
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888877664322 2345555555555555555555555555554
No 40
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.78 E-value=60 Score=23.81 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 133 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 133 ~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
..+..+-..- .-+.+++..||.....|.+||..|+-....
T Consensus 8 ~~l~~le~~l-~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 8 DRLDQLEQQL-GQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443332 455789999999999999999999876664
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.78 E-value=58 Score=26.78 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.++-..|+++...+..++..|..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455444444443
No 42
>PRK11637 AmiB activator; Provisional
Probab=60.36 E-value=1.3e+02 Score=27.24 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 027658 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQ--VFNEQIAQLKEKGKVLEA 162 (220)
Q Consensus 85 ~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~--ll~~qi~~lk~ke~~l~e 162 (220)
..++.++.++..+++++..++...... ..+|..++.+|...-..|.....+ .+..+|..++.+...++.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665555444433 345666666666666666554333 334566666665555555
Q ss_pred HHHHHHHHHhc
Q 027658 163 ENTRLEEKCGM 173 (220)
Q Consensus 163 eN~~L~~~~~~ 173 (220)
+-..++..+..
T Consensus 118 ~l~~~~~~l~~ 128 (428)
T PRK11637 118 QQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 43
>PRK13824 replication initiation protein RepC; Provisional
Probab=58.46 E-value=44 Score=30.41 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=55.5
Q ss_pred hhhccCCcceeeeee--CCCCccccccch----------hhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHH
Q 027658 34 ELSVLCDAEVAVIIF--SPRGKLSEFASS----------SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKI 101 (220)
Q Consensus 34 ELsvLCda~valivf--s~~gkl~~~~s~----------s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~ki 101 (220)
-|+.|. |++||++ ||+||=|-+-.. ++..++.||....... +..+.-+.++..++..+
T Consensus 103 hla~Lv--eaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A--------~~~~ae~~~~r~lr~~i 172 (404)
T PRK13824 103 HLAALV--EAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA--------EQVAAERKALRRLRERL 172 (404)
T ss_pred HHHHHH--HCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 355554 4557777 788998754321 5667788876643321 22333455566667777
Q ss_pred HHHHHHhhhhhCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 027658 102 ELLEVSKRKLLGEGLA-SCTLEELQQIERQLEKSVSNIRAR 141 (220)
Q Consensus 102 e~le~~~r~l~Ge~L~-~Ls~~EL~~LE~~Le~~L~~IR~R 141 (220)
..+....+.+...-.+ +++ .+...++..+...+..++.+
T Consensus 173 t~~rRdi~~li~~a~~~~~~-~~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 173 TLCRRDIAKLIEAAIEEGVP-GDWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHcCCC
Confidence 7776666665421111 111 14777777777777777643
No 44
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=58.18 E-value=70 Score=23.26 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 127 IERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 127 LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++...+.++..+..|++.+ ...|..+.++...+.+.-..++..+.
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665433 66777777777777766666666554
No 45
>PF14645 Chibby: Chibby family
Probab=56.84 E-value=19 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 149 QIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 149 qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
....++++.+.|.|||..|+-+++.
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888777663
No 46
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.61 E-value=1.9e+02 Score=28.66 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=48.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhh------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 87 MQHLKHEAANMVKKIELLEVSKRKLL------GEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL 160 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~r~l~------Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l 160 (220)
+|-++.|.+-|+.++..|...+|.-. |..--++-+--|+.|-..|+.-|..-..- -+++...-++|-+-...+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~-~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKS-QELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHh-HHHHHHhHHHHHHHHHHH
Confidence 45577777788877777766655421 21111344446666555555555443222 134555555566666667
Q ss_pred HHHHHHHHHHHhc
Q 027658 161 EAENTRLEEKCGM 173 (220)
Q Consensus 161 ~eeN~~L~~~~~~ 173 (220)
.+||+.|.+.+.+
T Consensus 468 ~~Enk~~~~~~~e 480 (861)
T PF15254_consen 468 KEENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776553
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=53.05 E-value=61 Score=21.04 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 135 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 135 L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
-...|.||.+ .+..|..+...|..+|..|..++..
T Consensus 17 A~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 17 ARRSRERKKA----EIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555533 4446666666677777777666654
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.82 E-value=1.8e+02 Score=27.06 Aligned_cols=72 Identities=22% Similarity=0.380 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 88 QHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL 167 (220)
Q Consensus 88 q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L 167 (220)
..++.++..+..+++.|..++..+. +....+..++..++...| +-+.++.+.|+.....++..-..|
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544433221 122334555555555544 334456666666666666666667
Q ss_pred HHHHh
Q 027658 168 EEKCG 172 (220)
Q Consensus 168 ~~~~~ 172 (220)
..++.
T Consensus 136 ~~~l~ 140 (472)
T TIGR03752 136 QRRLA 140 (472)
T ss_pred HHHHh
Confidence 66663
No 49
>PRK01371 sec-independent translocase; Provisional
Probab=51.85 E-value=16 Score=28.09 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=10.4
Q ss_pred eeeeeeCCCCccccc
Q 027658 43 VAVIIFSPRGKLSEF 57 (220)
Q Consensus 43 valivfs~~gkl~~~ 57 (220)
||||||+|. |+.++
T Consensus 15 VallvfGPe-KLP~~ 28 (137)
T PRK01371 15 LAVLVFGPD-KLPKA 28 (137)
T ss_pred HHhheeCch-HHHHH
Confidence 788999984 66654
No 50
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=50.64 E-value=15 Score=30.20 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=37.5
Q ss_pred cchhhhh----hhhhccCCcceeeeeeCCCC---ccccccchhhHHHHHHhhcc
Q 027658 26 NGLLKKA----FELSVLCDAEVAVIIFSPRG---KLSEFASSSMQETIERYLKH 72 (220)
Q Consensus 26 ~GL~KKA----~ELsvLCda~valivfs~~g---kl~~~~s~s~~~IleRY~~~ 72 (220)
.-|+.|- .|++|=+|-++.+++.+|+- ..-.|+...++.|+..|...
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence 4566664 78999999999999999872 34458888899999998764
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.92 E-value=1.2e+02 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 027658 87 MQHLKHEAANMVKKIELLEVSK 108 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~ 108 (220)
.+.++.++..|+.+++.|+...
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665543
No 52
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.46 E-value=70 Score=20.70 Aligned_cols=34 Identities=38% Similarity=0.477 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 135 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 135 L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
-...|.||... ++.|..+...|..+|..|...+.
T Consensus 17 Ar~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 17 ARRSRQRKKQY----IEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555443 34555555555555555555444
No 53
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.30 E-value=2.3e+02 Score=26.52 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 168 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~ 168 (220)
..++.++.++-..+...+..++.+...+ ..++..++++...|+.+-..|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 5688899999999988888888777443 4555666666665655544443
No 54
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=48.60 E-value=45 Score=28.87 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=31.0
Q ss_pred ceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCcccccc-chhhHHHHHHhhc
Q 027658 7 QMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFA-SSSMQETIERYLK 71 (220)
Q Consensus 7 ~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~-s~s~~~IleRY~~ 71 (220)
.+..|.|.+.|..+=|+ .||..|.+ +.| .|- .|.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 45678898888776332 47888775 444 243 4799999999865
No 55
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=48.54 E-value=66 Score=20.14 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 135 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 135 L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
-.+-|.||.+ .+..|......|..+|..|..++..
T Consensus 16 A~r~R~rkk~----~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 16 ARRSRQRKKQ----REEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455433 3446677777788888888777654
No 56
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=47.85 E-value=16 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=16.4
Q ss_pred hhhccCCcceeeeeeCCCCccccc
Q 027658 34 ELSVLCDAEVAVIIFSPRGKLSEF 57 (220)
Q Consensus 34 ELsvLCda~valivfs~~gkl~~~ 57 (220)
.|+--||+-|-+-||...|..-.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvf 25 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVF 25 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEE
T ss_pred ccCCccCceEEEEeecCCCcEEEE
Confidence 366679999999999999954443
No 57
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=47.82 E-value=26 Score=25.86 Aligned_cols=27 Identities=37% Similarity=0.321 Sum_probs=21.6
Q ss_pred hhhhhccCCcceeeeeeCCCCccccccc
Q 027658 32 AFELSVLCDAEVAVIIFSPRGKLSEFAS 59 (220)
Q Consensus 32 A~ELsvLCda~valivfs~~gkl~~~~s 59 (220)
-.+|-.|-|| +|+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 4577777777 56678999999999865
No 58
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=46.70 E-value=8.9 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=22.3
Q ss_pred chhhhhhhhhccCCcceeeeeeCCCCc
Q 027658 27 GLLKKAFELSVLCDAEVAVIIFSPRGK 53 (220)
Q Consensus 27 GL~KKA~ELsvLCda~valivfs~~gk 53 (220)
|=+-|..|+.+-||.|+-+++..+.|.
T Consensus 69 G~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 69 GHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 445567899999999999999998654
No 59
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=46.69 E-value=18 Score=28.05 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=25.5
Q ss_pred CcceeeeeeCCCCccccccch-hhHHHHHHhhcc
Q 027658 40 DAEVAVIIFSPRGKLSEFASS-SMQETIERYLKH 72 (220)
Q Consensus 40 da~valivfs~~gkl~~~~s~-s~~~IleRY~~~ 72 (220)
...++-||+ ++|++.+|..| .+.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 445555555 78999999888 999999998776
No 60
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=12 Score=31.18 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.9
Q ss_pred hccCCcceeeeeeCCCCcccc--ccc
Q 027658 36 SVLCDAEVAVIIFSPRGKLSE--FAS 59 (220)
Q Consensus 36 svLCda~valivfs~~gkl~~--~~s 59 (220)
||=.|-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 455778999999999999987 665
No 61
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=42.83 E-value=75 Score=19.94 Aligned_cols=19 Identities=37% Similarity=0.224 Sum_probs=11.6
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 027658 115 GLASCTLEELQQIERQLEK 133 (220)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~ 133 (220)
.|..+|++||++.-..|+.
T Consensus 4 fLk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCH
Confidence 3567888888875554443
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.75 E-value=3.2e+02 Score=26.41 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 122 EELQQIERQLEKSVSNIR-----ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 122 ~EL~~LE~~Le~~L~~IR-----~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
.++..|+..|+..-..++ .|+-+.+...|..|.++...-...-..|..++.
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555544 233445556677766654444444444444443
No 63
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.65 E-value=1.1e+02 Score=22.08 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
++|++|+..+-......-..+.. -..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788877765433221111211 235566666666666666666555555544
No 64
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.97 E-value=1.4e+02 Score=22.03 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 132 EKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 132 e~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
=.++..+-..- ..+.+++..||.....|.+||..|+-....
T Consensus 7 fd~l~~le~~l-~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 7 FDALDDLEQNL-GVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333 445678999999999999999999866543
No 65
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=41.31 E-value=94 Score=19.80 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEA 162 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~e 162 (220)
++|++|+.++-..-+..-....... +++.++++.+.++...|..
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4777777777622111111111111 4445555555555444443
No 66
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.21 E-value=1.2e+02 Score=21.05 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 149 QIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 149 qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
.|+..+..-..|..||..|..-++..
T Consensus 38 Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 38 RVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555567888999999888864
No 67
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.15 E-value=14 Score=30.60 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=16.1
Q ss_pred cceeeeeeCCCCcccc--ccch
Q 027658 41 AEVAVIIFSPRGKLSE--FASS 60 (220)
Q Consensus 41 a~valivfs~~gkl~~--~~s~ 60 (220)
-|-||-||||+|.++. |+..
T Consensus 4 ydraltvFSPDGhL~QVEYAqE 25 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQE 25 (249)
T ss_pred cccceEEECCCCCEEeeHhHHH
Confidence 4678999999999986 6553
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.04 E-value=4.5e+02 Score=27.80 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKN------QVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~------~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+.++++|+.--..++..+..++.... +-+..+|..|+.++..+..+...+...+.
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888887777777777777644322 23346677776666666666655555444
No 69
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.91 E-value=1.9e+02 Score=23.05 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 122 EELQQIERQLEKSVSNIR----------ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 122 ~EL~~LE~~Le~~L~~IR----------~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.++..++..++..-+... ..+..-..++|+.++++......+...|+++.+.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444432 2233455677888888777777777788777664
No 70
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.82 E-value=90 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 149 QIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 149 qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++..++++...+..+|..|+.++.
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 71
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=39.01 E-value=9.1 Score=26.32 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=26.9
Q ss_pred ccccccccccchhhh---------hhhhhccCCcceeeeeeCCCCc
Q 027658 17 RQVTFSKRRNGLLKK---------AFELSVLCDAEVAVIIFSPRGK 53 (220)
Q Consensus 17 R~vtfsKRr~GL~KK---------A~ELsvLCda~valivfs~~gk 53 (220)
+-+-||+-|++|-.| +.|+.+-||.|+-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 344457777777554 5789999999999999988876
No 72
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.32 E-value=74 Score=21.09 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+..++..++++...+..+|..|..++..
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777665
No 73
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=38.27 E-value=1.1e+02 Score=27.72 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Q 027658 131 LEKSVSNIRARKNQVFNEQIAQLKE--KGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 131 Le~~L~~IR~RK~~ll~~qi~~lk~--ke~~l~eeN~~L~~~~~~ 173 (220)
+.....+++.|-..+.....-.++. ..+.++.-|..|..++..
T Consensus 221 ~~~~~~~L~qRv~Dl~~a~~Va~Q~apqirliq~~N~~L~~kI~s 265 (386)
T COG3853 221 LTLFINRLEQRVYDLLLARMVALQTAPQIRLIQRNNQELIEKIQS 265 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHH
Confidence 3445566777777777665555554 578889999999999885
No 74
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.99 E-value=3.4e+02 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 140 ARKNQVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 140 ~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
++|.+-+...++.+.+....+.|+|+.|.+
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555555543
No 75
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.76 E-value=2e+02 Score=22.60 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=50.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhh--hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 027658 87 MQHLKHEAANMVKKIELLEVSKRKL--LGEGLASCTLEELQQIERQLEKSVSNIRARKNQVF---------NEQIAQLKE 155 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~r~l--~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll---------~~qi~~lk~ 155 (220)
+..++-....++.++..++...+.. +|++ |.+-|..+|.-.-..-...|.+|-.+|. ...+...++
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~---L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEG---LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666665554443 5555 6666666666666666666666644433 234456677
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027658 156 KGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 156 ke~~l~eeN~~L~~~~~~ 173 (220)
|...+..++..++..+..
T Consensus 85 Kl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777664
No 76
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.41 E-value=4.3e+02 Score=26.31 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 123 ELQQIERQLEKSVSNIRARKNQVF 146 (220)
Q Consensus 123 EL~~LE~~Le~~L~~IR~RK~~ll 146 (220)
++..+...|+..+..++.+|.+++
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 77
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.20 E-value=1.3e+02 Score=21.60 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 140 ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 140 ~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.-......+++.|......+..+|..|...+.+
T Consensus 72 a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 72 AHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445667788888899999999999988875
No 78
>PLN03128 DNA topoisomerase 2; Provisional
Probab=36.91 E-value=3.6e+02 Score=28.20 Aligned_cols=27 Identities=19% Similarity=0.536 Sum_probs=20.4
Q ss_pred eeeeeCCCCccccccchhhHHHHHHhhcc
Q 027658 44 AVIIFSPRGKLSEFASSSMQETIERYLKH 72 (220)
Q Consensus 44 alivfs~~gkl~~~~s~s~~~IleRY~~~ 72 (220)
-+++|.+.|++..|.+ +.+||..|..+
T Consensus 961 nm~l~d~~~~i~ky~~--~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDS--PEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCCC--HHHHHHHHHHH
Confidence 5677888888887755 57888888664
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.40 E-value=2.2e+02 Score=22.77 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 126 QIERQLEKSVSNIRARKNQVFNE--QIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 126 ~LE~~Le~~L~~IR~RK~~ll~~--qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+|+..|...=..+-.=+++++.= +...+..+...|.+||..|..++-.
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444333 3345667888899999999877543
No 80
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=36.29 E-value=3e+02 Score=24.12 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 90 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 90 l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
|+.+++.|+-+++.+......--.. -++|..-+....+..-+.|+ -..+.+..-|-....+...|.-||..|..
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~k-----y~ediei~Kekn~~Lqk~lK-LneE~ltkTi~qy~~QLn~L~aENt~L~S 77 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKK-----YLEDIEILKEKNDDLQKSLK-LNEETLTKTIFQYNGQLNVLKAENTMLNS 77 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence 5666777776666665432211111 14455555554444444443 33456666777777788888889999888
Q ss_pred HHhcc
Q 027658 170 KCGME 174 (220)
Q Consensus 170 ~~~~~ 174 (220)
+++.+
T Consensus 78 kLe~E 82 (305)
T PF14915_consen 78 KLEKE 82 (305)
T ss_pred HHHHh
Confidence 88653
No 81
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=36.22 E-value=2.6e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+++..+-+.|+.+.+.|.-+|..|...++
T Consensus 107 ~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 107 EILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555666666666666666665555
No 82
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=36.00 E-value=36 Score=24.54 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=22.7
Q ss_pred hhhhhhhccCCcceeeeeeCCCCccccccch
Q 027658 30 KKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (220)
Q Consensus 30 KKA~ELsvLCda~valivfs~~gkl~~~~s~ 60 (220)
-|-.||--+-|| +|.=.|||+||+.+|-++
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 355677666666 455679999999999875
No 83
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.61 E-value=2.3e+02 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027658 152 QLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 152 ~lk~ke~~l~eeN~~L~~~~~ 172 (220)
..+.....|...|..|+.+++
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444455556666665554
No 84
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.52 E-value=99 Score=22.30 Aligned_cols=31 Identities=32% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
|+..++.+.|+++...+.++|..|...+...
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999887763
No 85
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.21 E-value=1.4e+02 Score=20.16 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027658 147 NEQIAQLKEKGKVLEAENTRLE 168 (220)
Q Consensus 147 ~~qi~~lk~ke~~l~eeN~~L~ 168 (220)
.+.|..|+.+...|.++|..|.
T Consensus 17 veti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444444443
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.07 E-value=5.1e+02 Score=26.54 Aligned_cols=87 Identities=17% Similarity=0.309 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhh------hCCCCCCCCHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHH
Q 027658 86 NMQHLKHEAANMVKKIELLEVSKRKL------LGEGLASCTLEELQQIERQ---LEKSVSNIRAR------KNQVFNEQI 150 (220)
Q Consensus 86 ~~q~l~~e~~kL~~kie~le~~~r~l------~Ge~L~~Ls~~EL~~LE~~---Le~~L~~IR~R------K~~ll~~qi 150 (220)
..+.|+.++..++.+++.|+...--+ .|-+....|--++.+||.+ |-++|-+.|.- -.+.+..++
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34556677777777776665443221 2555556666677777654 66666666542 122333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027658 151 AQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 151 ~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+..+.....|...-..|..++.
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 4333333444444444444443
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.18 E-value=39 Score=28.74 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=13.7
Q ss_pred hhccCCcceeeeeeCCCCccccccchhhHHHHHHhh
Q 027658 35 LSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYL 70 (220)
Q Consensus 35 LsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~ 70 (220)
|++|+++-+...++.|. .+..-+++++++-+.+..
T Consensus 12 ~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~le 46 (263)
T PRK10803 12 LSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQLE 46 (263)
T ss_pred HHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHHH
Confidence 45565533332233332 122233444454444443
No 88
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=33.61 E-value=40 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.9
Q ss_pred ceeeeeeCCCC--ccccccch-hhHHHHHHhhcc
Q 027658 42 EVAVIIFSPRG--KLSEFASS-SMQETIERYLKH 72 (220)
Q Consensus 42 ~valivfs~~g--kl~~~~s~-s~~~IleRY~~~ 72 (220)
.+-++|++.+| +++.++.+ ....++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46788999987 57766655 889999999653
No 89
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.59 E-value=3.4e+02 Score=23.99 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 130 QLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 130 ~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
.|...|...|.+- .-+..+++.|+++...++.+++.|+.++...
T Consensus 69 ~La~lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 69 NLAQLLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3444555555554 4567899999999999999999999988864
No 90
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.55 E-value=2.8e+02 Score=26.34 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=33.4
Q ss_pred hhccCCcceeeeeeCCCCcccccc----chhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHH
Q 027658 35 LSVLCDAEVAVIIFSPRGKLSEFA----SSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS 107 (220)
Q Consensus 35 LsvLCda~valivfs~~gkl~~~~----s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~ 107 (220)
+.+.|+-..|-+.|+..-..+.+. +.-|..+|.-++.....+-... .-.-+...+++|+.+++.++..
T Consensus 404 ~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~-----rer~l~a~t~kL~~E~e~~q~~ 475 (588)
T KOG3612|consen 404 KLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYSGS-----RERSLVAATEKLRQEFEELQQT 475 (588)
T ss_pred hhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhhcC-----CccchHHHHHHHHHHHHHHHHH
Confidence 456677777766676553333322 2345555544444322221111 1112445567777777666543
No 91
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.45 E-value=3.2e+02 Score=24.39 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 129 RQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 129 ~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++||..+.+.++++.++ .-+++.+++.-+...+|+..|-..+.
T Consensus 130 q~LE~li~~~~EEn~~l-qlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCL-QLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 34444455555544332 33444444444444444444443333
No 92
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=33.40 E-value=45 Score=22.02 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=21.6
Q ss_pred CCcceeeeeeCCCCccccccch-hhHHHHHHh
Q 027658 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERY 69 (220)
Q Consensus 39 Cda~valivfs~~gkl~~~~s~-s~~~IleRY 69 (220)
|+..-.++|+ |.|..|...++ .+..|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6665566666 67788888777 888888753
No 93
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.82 E-value=1.1e+02 Score=26.72 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 116 LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL 167 (220)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L 167 (220)
-++||.+|-.. |..||.||.+|+ ++|+.|+.......+|-..|
T Consensus 8 p~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 45677776544 456999998875 67888888877776665444
No 94
>PLN03194 putative disease resistance protein; Provisional
Probab=32.66 E-value=2.6e+02 Score=22.69 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=22.5
Q ss_pred CCcceeeeeeCCCCccccccchhhHHHHHH
Q 027658 39 CDAEVAVIIFSPRGKLSEFASSSMQETIER 68 (220)
Q Consensus 39 Cda~valivfs~~gkl~~~~s~s~~~IleR 68 (220)
=.+.++|+|||++=--..||-..+..|++.
T Consensus 79 eeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 79 RNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 457899999999744455666677777765
No 95
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=32.49 E-value=2.8e+02 Score=26.28 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=16.8
Q ss_pred cccceeeecCCCCcccccccccc
Q 027658 4 GKTQMRRIENATSRQVTFSKRRN 26 (220)
Q Consensus 4 ~Ki~ik~Ien~~~R~vtfsKRr~ 26 (220)
|++...+..|.+.|-.+|-+|-.
T Consensus 521 gn~~~~~lSN~TRns~~~~~~i~ 543 (673)
T KOG4378|consen 521 GNRRLRLLSNATRNSTPHHANIT 543 (673)
T ss_pred ccccccccccccccCCcccccCC
Confidence 56666777788888888877654
No 96
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=32.38 E-value=1.1e+02 Score=24.49 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=34.5
Q ss_pred cceeeeee--CCCCccccccch----------hhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHHh
Q 027658 41 AEVAVIIF--SPRGKLSEFASS----------SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK 108 (220)
Q Consensus 41 a~valivf--s~~gkl~~~~s~----------s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~~ 108 (220)
+|.+||+. ||+||=|-.-++ ++..++.||....... +..+........++.++..+....
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~a--------~~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAALA--------EAARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888 588887764321 5677778876643321 122233344455555555554443
Q ss_pred hh
Q 027658 109 RK 110 (220)
Q Consensus 109 r~ 110 (220)
+.
T Consensus 168 ~~ 169 (177)
T PF03428_consen 168 RK 169 (177)
T ss_pred HH
Confidence 33
No 97
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.35 E-value=5.2e+02 Score=25.77 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.6
Q ss_pred eeeeeC
Q 027658 44 AVIIFS 49 (220)
Q Consensus 44 alivfs 49 (220)
+-+.|+
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 334454
No 98
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=32.08 E-value=78 Score=23.72 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 149 QIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 149 qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
.+++|..+...|+=||+.|++++...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35678888888999999999999863
No 99
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=31.74 E-value=38 Score=30.52 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=27.7
Q ss_pred hhhhccCCcce--eeeeeCCCCccccccch-----hhHHHHHHhhcccc
Q 027658 33 FELSVLCDAEV--AVIIFSPRGKLSEFASS-----SMQETIERYLKHTK 74 (220)
Q Consensus 33 ~ELsvLCda~v--alivfs~~gkl~~~~s~-----s~~~IleRY~~~~~ 74 (220)
+-|||+||-+| |||--..+| |-|+.| ++++.+.-|+..+-
T Consensus 367 yalSV~~~~~V~HClIy~tatG--~GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATG--FGFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred eEEEEEECCceeeeEEeecccc--ccccchhHHHHHHHHHHHHHhhhhH
Confidence 56899999877 555545555 444444 78888888877653
No 100
>PLN02939 transferase, transferring glycosyl groups
Probab=31.42 E-value=1.4e+02 Score=30.46 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 127 IERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 166 (220)
Q Consensus 127 LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~ 166 (220)
+|..|..+-..|.+. -+++++.++..+.....|.+|+..
T Consensus 363 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 363 LEERLQASDHEIHSY-IQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344444444444433 256677777777777777777655
No 101
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=31.15 E-value=2.3e+02 Score=21.25 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhhhC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027658 86 NMQHLKHEAANMVKKIELLEVSKRKLLG----EGLASCTLEELQQIERQLEKSVSNIRARK 142 (220)
Q Consensus 86 ~~q~l~~e~~kL~~kie~le~~~r~l~G----e~L~~Ls~~EL~~LE~~Le~~L~~IR~RK 142 (220)
.++.|..++.+|+-++..|....++-.| .+-.-|+..+=+-+-...-.+|...-.+|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999888777777 56667888877777666666666655544
No 102
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.98 E-value=2e+02 Score=20.60 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~ 170 (220)
++|+.|+..+-..... ..-..++.++++.+.++...|...-..|...
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDR 104 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776655442 3333455555555555555555544444443
No 103
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=30.59 E-value=32 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=19.9
Q ss_pred hhccCCcceeeeeeCCCCccccccc
Q 027658 35 LSVLCDAEVAVIIFSPRGKLSEFAS 59 (220)
Q Consensus 35 LsvLCda~valivfs~~gkl~~~~s 59 (220)
+.++|||||-++|-+.+.+-.-||.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 5789999999999998877555543
No 104
>PHA03162 hypothetical protein; Provisional
Probab=30.58 E-value=2.5e+02 Score=21.49 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHhhhhhCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027658 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEG----LASCTLEELQQIERQLEKSVSNIRARK 142 (220)
Q Consensus 85 ~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~----L~~Ls~~EL~~LE~~Le~~L~~IR~RK 142 (220)
..++.|..++.+|+-++..|....+.-.|.+ -..|+..+=+-+-...-.+|...-++|
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999987776655554 234777776666666666666555544
No 105
>PHA03155 hypothetical protein; Provisional
Probab=30.48 E-value=82 Score=23.42 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 150 IAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 150 i~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
+++|..+...|.=||+.|++++...
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667777888999999999999753
No 106
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.44 E-value=2.6e+02 Score=21.73 Aligned_cols=52 Identities=29% Similarity=0.384 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027658 90 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARK 142 (220)
Q Consensus 90 l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK 142 (220)
+...+..|..+++.++..+..+.+ +-...|.+|...++..........+.||
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544444443 3333555566666655555555555555
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.16 E-value=6.4e+02 Score=26.16 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=33.7
Q ss_pred eeeeeeCCCCccccccchhhHHHHHHhhcccccccCCC------CCchhhHHHHHHHHHhHHHHHHHHHHHhh
Q 027658 43 VAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQ------QPTEQNMQHLKHEAANMVKKIELLEVSKR 109 (220)
Q Consensus 43 valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~~~------~~~~~~~q~l~~e~~kL~~kie~le~~~r 109 (220)
=+.-+|.++|...-|+.|. |.-++....... ...+..++.++.++..+++++-.++...+
T Consensus 620 n~~~aytldg~~~~~~g~~-------~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~ 685 (1074)
T KOG0250|consen 620 NVTKAYTLDGRQIFAGGPN-------YRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRR 685 (1074)
T ss_pred cceeeeccCccccccCCCC-------cceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777555455553 333332221111 12356678888888888887766665433
No 108
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=29.63 E-value=3e+02 Score=26.88 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 123 ELQQIERQLEKSVSNIRARKNQVF---NEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 123 EL~~LE~~Le~~L~~IR~RK~~ll---~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+|..|+++-+.-+...+.+.+++- .+|++.||.-.+.|+.|.+.|.-....
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666665543 367888888888899998888766553
No 109
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=29.32 E-value=45 Score=18.88 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=14.6
Q ss_pred cceeeeeeCCCCccccccch
Q 027658 41 AEVAVIIFSPRGKLSEFASS 60 (220)
Q Consensus 41 a~valivfs~~gkl~~~~s~ 60 (220)
..-.-..|||+|+-..|+|.
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEE
T ss_pred ccccCEEEecCCCEEEEEec
Confidence 34566789999998888874
No 110
>PHA03155 hypothetical protein; Provisional
Probab=29.30 E-value=2.4e+02 Score=20.97 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027658 86 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARK 142 (220)
Q Consensus 86 ~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK 142 (220)
.++.|..++.+|+-++..|....+.-.+.+-..|+..+=+-+-...-.+|...-++|
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999988887665555555567888887777777666666655544
No 111
>PHA03162 hypothetical protein; Provisional
Probab=28.89 E-value=87 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.237 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 150 IAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 150 i~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
+++|..+...|+=||+.|++++...
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777788999999999999753
No 112
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=28.46 E-value=1.5e+02 Score=22.70 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++|++++..+-..+...-...-.....++.+++..+.++...|..--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888887765432111111112235555556666666666555555655554
No 113
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=28.36 E-value=2.4e+02 Score=24.27 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=24.6
Q ss_pred hhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027658 109 RKLLGEGLASCTLEELQQIERQLEKSVSNIRA 140 (220)
Q Consensus 109 r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~ 140 (220)
.+..-+.|.+|+++||.+|-..|-..+..|-.
T Consensus 209 ~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 209 PHYSREELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556889999999999999888766655544
No 114
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=28.29 E-value=55 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=21.1
Q ss_pred CCcceeeeeeCCCCccccccch-hhHHHHHHh
Q 027658 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERY 69 (220)
Q Consensus 39 Cda~valivfs~~gkl~~~~s~-s~~~IleRY 69 (220)
|+-..+++| +|..|...+| .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 777777777 3788888887 788888764
No 115
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.96 E-value=1.2e+02 Score=20.71 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHH
Q 027658 65 TIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS 107 (220)
Q Consensus 65 IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~ 107 (220)
++-.|.+.............+.++.+.....+|+..++.||..
T Consensus 22 l~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 22 LILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665443332222112345667778899999999998853
No 116
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.77 E-value=1.4e+02 Score=18.09 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 150 IAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 150 i~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
.+.||+=-..|.+||..|++.+.+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778899999999988864
No 117
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.68 E-value=3.1e+02 Score=21.71 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 116 LASCTLEELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~~L~~IR~--RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
...+++++...+-+.+......... .-.+-+.+++..|+.+...|..+|..|.+++..
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999988888888764322221 122345667777888888888888877766553
No 118
>smart00338 BRLZ basic region leucin zipper.
Probab=27.13 E-value=1.8e+02 Score=18.74 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
.+..+...|+.+...|..++..|...+
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777777777776654
No 119
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=27.11 E-value=2.4e+02 Score=21.11 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++|++|+..+-...+..-... ..-.+++.++++.+..+...|..--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVS 110 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888777655432211111 112345666666666666666665555655554
No 120
>PRK11637 AmiB activator; Provisional
Probab=26.88 E-value=4.8e+02 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027658 146 FNEQIAQLKEKGKVLEA 162 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~e 162 (220)
+..+|..++.+...+.+
T Consensus 108 l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 108 LNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666544444
No 121
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.62 E-value=4.4e+02 Score=23.05 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.6
Q ss_pred cceeec
Q 027658 199 TELFIG 204 (220)
Q Consensus 199 t~L~ig 204 (220)
..|.||
T Consensus 154 NGlRLG 159 (314)
T PF04111_consen 154 NGLRLG 159 (314)
T ss_dssp TTEEE-
T ss_pred CCeeec
Confidence 445555
No 122
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.24 E-value=2.1e+02 Score=19.31 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.+..++..++++...+..+|..|+.++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888899999999888775
No 123
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=26.10 E-value=45 Score=32.14 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.2
Q ss_pred hccCCcceeeeeeCCCCccccc
Q 027658 36 SVLCDAEVAVIIFSPRGKLSEF 57 (220)
Q Consensus 36 svLCda~valivfs~~gkl~~~ 57 (220)
|||.|+-++||+|.++|.++.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999998775
No 124
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.03 E-value=2.4e+02 Score=20.39 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSV---SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L---~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
+|++|+..+-...+..- ... ....+++.+++..+..+...|...-..|..
T Consensus 57 ~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 57 LTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776655433220 011 111245555555555555555544444443
No 125
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.01 E-value=2.7e+02 Score=20.50 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++|++|+..+-...+. ..+. .-..++.+++..++++...|..-...|...+.
T Consensus 56 G~sl~eI~~~l~~~~~--~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THCR-EMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCCHHHHHHHHhcccC--CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777776543221 1111 11245556666666666666665555655444
No 126
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.93 E-value=5.6e+02 Score=24.12 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=35.3
Q ss_pred HHHHHHHHhHHHHHHHHHHH----hhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 88 QHLKHEAANMVKKIELLEVS----KRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFN 147 (220)
Q Consensus 88 q~l~~e~~kL~~kie~le~~----~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~ 147 (220)
+.++.++..-..+++.|+.. ...+...+++.-.++...+--.+|..-|..|...+..|..
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k 396 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTK 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 33444444444444444432 1234445666556666677777888888888888877654
No 127
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=25.76 E-value=3.8e+02 Score=24.52 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhCC-CCCCCCHHHHHHHHHHHHHHHH
Q 027658 87 MQHLKHEAANMVKKIELLEVSKRKLLGE-GLASCTLEELQQIERQLEKSVS 136 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~r~l~Ge-~L~~Ls~~EL~~LE~~Le~~L~ 136 (220)
...++....+++.....++...+...-| ..+-++.+||..+...|...+.
T Consensus 257 ~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~ 307 (459)
T PF10337_consen 257 LKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMI 307 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHH
Confidence 4567777777777777777766655322 3566889999998887776444
No 128
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=25.59 E-value=54 Score=25.69 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=17.7
Q ss_pred ccCCcceeeeeeCCCCcccc-ccc
Q 027658 37 VLCDAEVAVIIFSPRGKLSE-FAS 59 (220)
Q Consensus 37 vLCda~valivfs~~gkl~~-~~s 59 (220)
.-|++.|-+++||+.-+.|. |..
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP 132 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIP 132 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEEEEcCCCceEEEEcC
Confidence 57999999999999988665 544
No 129
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=25.40 E-value=2.5e+02 Score=20.80 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++|++|+..+-..-+..-... ..-.+++.++++.+..+...|...-..|.....
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLRG 110 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777654222111001 112245666677777766666666666655443
No 130
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=25.34 E-value=3.8e+02 Score=21.99 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=7.1
Q ss_pred ccchhhHHHHHHhhc
Q 027658 57 FASSSMQETIERYLK 71 (220)
Q Consensus 57 ~~s~s~~~IleRY~~ 71 (220)
|.+|-+..=++|+..
T Consensus 60 ~~t~~l~~E~~R~~~ 74 (221)
T PF05700_consen 60 FETPLLQAELERVAS 74 (221)
T ss_pred ccchhHHHHHHHHHc
Confidence 444545554555444
No 131
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=25.31 E-value=5.6e+02 Score=23.92 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 101 IELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL 167 (220)
Q Consensus 101 ie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L 167 (220)
....+..+|+++.. .-|+-|+......+.+.+..+.+|.+++ ..||+.|..|...|.+.-.-|
T Consensus 405 fR~Vk~~qRkl~e~---~nsl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 405 FRSVKWEQRKLSEQ---ANSLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred HHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 34455556666643 4567889999999999999999998665 568888888877776654444
No 132
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.23 E-value=2.7e+02 Score=20.19 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQL 131 (220)
Q Consensus 118 ~Ls~~EL~~LE~~L 131 (220)
+++++|+..+-...
T Consensus 56 G~sl~eI~~~l~~~ 69 (116)
T cd04769 56 GFTLAELKAIFAGH 69 (116)
T ss_pred CCCHHHHHHHHhcc
Confidence 36677776665443
No 133
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.90 E-value=6.1e+02 Score=24.20 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=15.2
Q ss_pred hhhhhhccCCcceeeeeeCCC-C------ccccccch
Q 027658 31 KAFELSVLCDAEVAVIIFSPR-G------KLSEFASS 60 (220)
Q Consensus 31 KA~ELsvLCda~valivfs~~-g------kl~~~~s~ 60 (220)
+|+.|--. |.+-=..||... | .+|.|..|
T Consensus 78 ~ayyLPk~-~~e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 78 QAYYLPKD-DDEFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred CcccCCCC-CCCeEEEEEECCCccEEEecCCcccCCC
Confidence 46666653 234444455543 3 36777665
No 134
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=24.88 E-value=3.2e+02 Score=20.98 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=20.4
Q ss_pred eeCCCCccccccchhhHHHHHHhhcccccccCCCCCchhhHH-HHHHHHHhHHH
Q 027658 47 IFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQ-HLKHEAANMVK 99 (220)
Q Consensus 47 vfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q-~l~~e~~kL~~ 99 (220)
||.|.+ +..|+. .+|+...+.++.+.......+..++ ....++.+|+.
T Consensus 1 vf~~~~-pv~fS~----~ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~ 49 (142)
T PF07956_consen 1 VFTPST-PVQFSQ----SLLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEE 49 (142)
T ss_pred CCCCCC-CcccCH----HHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455543 333543 3555665555443221111122233 24455555553
No 135
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.79 E-value=3.7e+02 Score=21.61 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027658 142 KNQVFNEQIAQLKEKGKVLE 161 (220)
Q Consensus 142 K~~ll~~qi~~lk~ke~~l~ 161 (220)
......++|+.|++....|.
T Consensus 164 ~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 164 EEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555554444443
No 136
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.73 E-value=3.5e+02 Score=21.32 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhccc
Q 027658 161 EAENTRLEEKCGMEN 175 (220)
Q Consensus 161 ~eeN~~L~~~~~~~~ 175 (220)
..+-..|+..++...
T Consensus 137 ~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 137 DTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333345555555433
No 137
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.72 E-value=1.7e+02 Score=17.80 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 143 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 143 ~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
-..+....+.|+..-..|..||..|+.++..
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888899999999888765
No 138
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=24.63 E-value=1.2e+02 Score=20.10 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027658 97 MVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNI 138 (220)
Q Consensus 97 L~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~I 138 (220)
++++++.++-.+-.+..+-+.+-++++|.+.+..++..-+.+
T Consensus 23 lr~eiealkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 23 LRKEIEALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Confidence 445555555444444444455566788888888777654443
No 139
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.58 E-value=8.1e+02 Score=25.46 Aligned_cols=53 Identities=15% Similarity=0.383 Sum_probs=24.5
Q ss_pred eeCCCCcccc-ccchhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHHh
Q 027658 47 IFSPRGKLSE-FASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK 108 (220)
Q Consensus 47 vfs~~gkl~~-~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~~ 108 (220)
||.|.|-+.- +.+++.. +|..++.+... +..++..+.+++.+..++..++...
T Consensus 654 V~dP~GtlTGGs~~~~a~-~L~~l~~l~~~--------~~~~~~~q~el~~le~eL~~le~~~ 707 (1174)
T KOG0933|consen 654 VYDPSGTLTGGSRSKGAD-LLRQLQKLKQA--------QKELRAIQKELEALERELKSLEAQS 707 (1174)
T ss_pred eeCCCCcccCCCCCCccc-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776665 2223322 44444332211 1223344555555555555555443
No 140
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.34 E-value=2.9e+02 Score=20.23 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~ 170 (220)
+++.+++..+..+...|.+.-..|...
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~ 109 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAA 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444433
No 141
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=23.80 E-value=2.5e+02 Score=21.27 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
++|++|+..+-......-...-.....++.++++.+.++...|.+-...|....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777654321100000011224555666666666655655555555443
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=23.78 E-value=7.1e+02 Score=24.58 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 027658 157 GKVLEAENTRLEEKCGME 174 (220)
Q Consensus 157 e~~l~eeN~~L~~~~~~~ 174 (220)
...|+++|+.|.+++.++
T Consensus 610 ieeLqqeNk~LKKk~~aE 627 (786)
T PF05483_consen 610 IEELQQENKALKKKITAE 627 (786)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445788899998888864
No 143
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.78 E-value=1.8e+02 Score=23.11 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 027658 124 LQQIERQLEKSVS 136 (220)
Q Consensus 124 L~~LE~~Le~~L~ 136 (220)
|.+||..+..++.
T Consensus 2 LeD~EsklN~AIE 14 (166)
T PF04880_consen 2 LEDFESKLNQAIE 14 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666554
No 144
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.70 E-value=7.3e+02 Score=24.61 Aligned_cols=21 Identities=33% Similarity=0.222 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 027658 153 LKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 153 lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+|-..+.|.||...|..++++
T Consensus 126 ~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 126 LKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777764
No 145
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.59 E-value=2.7e+02 Score=19.62 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLE 132 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le 132 (220)
+++++++..+-....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 688888888776553
No 146
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=23.28 E-value=48 Score=30.12 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=44.3
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccch-hhHHHHHHhhc
Q 027658 8 MRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERYLK 71 (220)
Q Consensus 8 ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~-s~~~IleRY~~ 71 (220)
|+++-+...-..||.+|+.| ||+.+||..+-+.||....-...|+++ -+.+.-.-|+.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~ 76 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQK 76 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhh
Confidence 67778888888999999999 999999999988888877666777775 33333333433
No 147
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=23.13 E-value=87 Score=25.08 Aligned_cols=18 Identities=44% Similarity=0.625 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027658 123 ELQQIERQLEKSVSNIRA 140 (220)
Q Consensus 123 EL~~LE~~Le~~L~~IR~ 140 (220)
||++||.+|++.+-.|++
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 556667777766666653
No 148
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.10 E-value=2.9e+02 Score=21.77 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~ 170 (220)
+++++|+..+-..-.... ..++.+++..+.++...|...-..|...
T Consensus 58 G~sL~eI~~ll~~~~~~~-------~~~L~~~~~~l~~ei~~L~~~~~~l~~l 103 (172)
T cd04790 58 GVSLEDIRSLLQQPGDDA-------TDVLRRRLAELNREIQRLRQQQRAIATL 103 (172)
T ss_pred CCCHHHHHHHHhcCChhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766544332222 2334444444444444444444444433
No 149
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.10 E-value=4.8e+02 Score=22.31 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 142 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 142 K~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
.++.|..+|..-++-+..+.++...|+..++..
T Consensus 187 ~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 187 ENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666777777777666653
No 150
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=23.08 E-value=27 Score=23.04 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=22.4
Q ss_pred cccccchhhhhhhhhccCC-cceeeeeeCCCCcc
Q 027658 22 SKRRNGLLKKAFELSVLCD-AEVAVIIFSPRGKL 54 (220)
Q Consensus 22 sKRr~GL~KKA~ELsvLCd-a~valivfs~~gkl 54 (220)
..||.|.+-+ |.|+-+| .+=.+-||+..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 4688886655 8888886 47788889998875
No 151
>PHA02109 hypothetical protein
Probab=23.03 E-value=2.5e+02 Score=22.65 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=25.0
Q ss_pred hhhhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 109 RKLLGEGLASCT--LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEA 162 (220)
Q Consensus 109 r~l~Ge~L~~Ls--~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~e 162 (220)
+...|+.|++|+ ++++..|+..|+ .+.++..++|.|...+..
T Consensus 178 ~~~t~~~L~~~~~~L~~I~~L~~ki~------------~LS~E~~Q~~~Ki~N~R~ 221 (233)
T PHA02109 178 RSHTGENLEGLTDKLKQISELTIKLE------------ALSDEACQVKHKILNLRA 221 (233)
T ss_pred hccchhhhhhhhHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 455778877776 445555555443 455566666666555544
No 152
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=23.00 E-value=1.6e+02 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 121 LEELQQIERQLEKSVSNIRARKNQV 145 (220)
Q Consensus 121 ~~EL~~LE~~Le~~L~~IR~RK~~l 145 (220)
-.|+..+|..|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999999999988888664
No 153
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=22.78 E-value=41 Score=29.18 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=13.4
Q ss_pred hccCCcceeeeeeCCC
Q 027658 36 SVLCDAEVAVIIFSPR 51 (220)
Q Consensus 36 svLCda~valivfs~~ 51 (220)
.-+||+||||+||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999754
No 154
>PLN02372 violaxanthin de-epoxidase
Probab=22.77 E-value=6.1e+02 Score=23.39 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 121 LEELQQIERQLEKSVSNIRARKNQVFNE 148 (220)
Q Consensus 121 ~~EL~~LE~~Le~~L~~IR~RK~~ll~~ 148 (220)
++|..++|.+|+.-...|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777665555443
No 155
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.67 E-value=2.4e+02 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
..+++..|+++...|..||..|++-..
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888899999999987764
No 156
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=3.4e+02 Score=20.36 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 132 EKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 132 e~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.++..+..|+ +.+.-+|..|.+++..+.++-..|+.++..
T Consensus 69 ~~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554444 455667888888888888888888877765
No 157
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=22.56 E-value=1.6e+02 Score=16.73 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 124 LQQIERQLEKSVSNIRARKNQVFNEQIAQLKE 155 (220)
Q Consensus 124 L~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ 155 (220)
+..|+..+..+...-+=-+...+.++|..|++
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 45555555555555555555555555555554
No 158
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=22.49 E-value=3.3e+02 Score=24.01 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=43.3
Q ss_pred cceeeeeeCCCCc-----cccccchhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHHhhhhhCCC
Q 027658 41 AEVAVIIFSPRGK-----LSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEG 115 (220)
Q Consensus 41 a~valivfs~~gk-----l~~~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~ 115 (220)
+-|||+.|.+..- .|.|-.. .-+.||....... ..++++.++.+...++.+.+.+=-..|.-.+.+
T Consensus 118 CvICLygfa~~~~ft~T~C~Hy~H~---~ClaRyl~~~~~~------lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 118 CVICLYGFASSPAFTVTACDHYMHF---ACLARYLTECLTG------LRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred eEEEEEeecCCCceeeehhHHHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4578888876532 2223221 2366776643211 123344444444445555554433345555655
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHHHHHH
Q 027658 116 LASCTLE----ELQQIERQLEKSVSNIRARK 142 (220)
Q Consensus 116 L~~Ls~~----EL~~LE~~Le~~L~~IR~RK 142 (220)
.++|-+. ++..+-...-.+|+....||
T Consensus 189 ~~slk~a~~Pt~~l~~~~~~~eslrq~~~r~ 219 (368)
T KOG4445|consen 189 ENSLKIAEFPTYPMELYQPSAESLRQQEERK 219 (368)
T ss_pred ccceeccCCCccccccCcccHHHHHHHHHHH
Confidence 5554433 22222222444555555555
No 159
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.45 E-value=2.8e+02 Score=19.30 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+..+|+.+.++...+..+-..+...+.+
T Consensus 74 ~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 74 LEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655543
No 160
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=22.08 E-value=98 Score=27.98 Aligned_cols=40 Identities=38% Similarity=0.556 Sum_probs=23.4
Q ss_pred eeeeCCCCccccccchhhHHHHHHhhccccc-ccCCCCCchhhHHHH
Q 027658 45 VIIFSPRGKLSEFASSSMQETIERYLKHTKD-TRNKQQPTEQNMQHL 90 (220)
Q Consensus 45 livfs~~gkl~~~~s~s~~~IleRY~~~~~~-~~~~~~~~~~~~q~l 90 (220)
=||.|..||+| .=.++|.||.++--. .+..+. +..++|-|
T Consensus 101 KIilsdegkmy-----GRNELIarYIKlrtgktRTrKQ-VSSHIQVl 141 (455)
T KOG3841|consen 101 KIILSDEGKMY-----GRNELIARYIKLRTGKTRTRKQ-VSSHIQVL 141 (455)
T ss_pred eEEEccCcccc-----chHHHHHHHHHHhcCCchhHHH-HHHHHHHH
Confidence 35555666666 457899999997433 333222 24456655
No 161
>PF14282 FlxA: FlxA-like protein
Probab=21.86 E-value=3.2e+02 Score=19.76 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 141 RKNQVFNEQIAQLKEKGKVLEAENT 165 (220)
Q Consensus 141 RK~~ll~~qi~~lk~ke~~l~eeN~ 165 (220)
.+.++|..+|..|......|..+-.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555544443
No 162
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=21.84 E-value=2.7e+02 Score=21.68 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
++|++|+..+-......-...-..-..++.++++.+.++...|...-..|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777665432111000011123344444455555444444444454444
No 163
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=21.72 E-value=1.8e+02 Score=22.22 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHH
Q 027658 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLE 122 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~ 122 (220)
+..|+.++++.+..+..+..+.+++.|.|.++.-.-
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~ 40 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPG 40 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCcc
Confidence 456788888889999999999999999987665443
No 164
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.57 E-value=6e+02 Score=22.84 Aligned_cols=71 Identities=10% Similarity=0.206 Sum_probs=37.3
Q ss_pred hHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHHhhhhhC-CCC---C---CCCHHHHHHHHHHHHHH
Q 027658 62 MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLG-EGL---A---SCTLEELQQIERQLEKS 134 (220)
Q Consensus 62 ~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~~r~l~G-e~L---~---~Ls~~EL~~LE~~Le~~ 134 (220)
++.+++.|....-..... .......++..++..++++++..+.....+.- .++ + ++....|.+|+.++...
T Consensus 150 ~n~~~~~y~~~~~~~~~~--~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~ 227 (444)
T TIGR03017 150 ANAFAQAYIDTNIELKVE--PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAA 227 (444)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHH
Confidence 455566777654322111 11233567778888888888777766544321 111 1 23345666666555443
No 165
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=21.57 E-value=1e+03 Score=25.65 Aligned_cols=122 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred eeeeCCCCccccccchhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHH-----------------
Q 027658 45 VIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS----------------- 107 (220)
Q Consensus 45 livfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~----------------- 107 (220)
+++|.++|++..|.++ .+||..|..+--.--.... +..+..++.++..|..+..-....
T Consensus 963 m~~~d~~g~i~~~~~~--~~Il~~f~~~Rl~~y~kR~--~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~ 1038 (1388)
T PTZ00108 963 MVLFDENGKIKKYSDA--LDILKEFYLVRLDLYKKRK--EYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVK 1038 (1388)
T ss_pred EEEEeCCCCcceeCCH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHH
Q ss_pred -------------------------------------------------hhhhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027658 108 -------------------------------------------------KRKLLGEGLASCTLEELQQIERQLEKSVSNI 138 (220)
Q Consensus 108 -------------------------------------------------~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~I 138 (220)
.-.+++-.|-+|+.+....|..+++.....+
T Consensus 1039 ~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~ 1118 (1388)
T PTZ00108 1039 ELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKEL 1118 (1388)
T ss_pred HHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 139 RARKNQ----VFNEQIAQLKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 139 R~RK~~----ll~~qi~~lk~ke~~l~eeN~~L~~~ 170 (220)
..=+.. +..++++.+.++-....++-.....+
T Consensus 1119 ~~L~~~t~~~lw~~DL~~~~~~~~~~~~~~~~~~~~ 1154 (1388)
T PTZ00108 1119 EKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAK 1154 (1388)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=21.57 E-value=60 Score=27.49 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.6
Q ss_pred hhhccCCcceeeeeeCCCCccccccch
Q 027658 34 ELSVLCDAEVAVIIFSPRGKLSEFASS 60 (220)
Q Consensus 34 ELsvLCda~valivfs~~gkl~~~~s~ 60 (220)
+|.-.++++|++||..+.|+++--+.+
T Consensus 134 ~l~~~~g~~v~VIItDt~gr~~R~G~~ 160 (243)
T TIGR01916 134 GLRELTGVDVGVIITDTNGRPFREGQV 160 (243)
T ss_pred HHHHHHCCCEEEEEECCCCCccccCCC
Confidence 455678999999999999999887664
No 167
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=21.51 E-value=1.1e+02 Score=21.71 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=28.1
Q ss_pred cCCcceeeeeeCCCC-ccccccch-hhHHHHHHhhccc
Q 027658 38 LCDAEVAVIIFSPRG-KLSEFASS-SMQETIERYLKHT 73 (220)
Q Consensus 38 LCda~valivfs~~g-kl~~~~s~-s~~~IleRY~~~~ 73 (220)
+|..+--+.|+.|.| -+|....| .+.+|++.+...+
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~~ 81 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALEG 81 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhcC
Confidence 588898898987888 55656666 8999999987643
No 168
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.10 E-value=2e+02 Score=19.68 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHH
Q 027658 85 QNMQHLKHEAANMVKKIELLEVS 107 (220)
Q Consensus 85 ~~~q~l~~e~~kL~~kie~le~~ 107 (220)
+.++.+.....+|+..++.||.-
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T PF06667_consen 42 QRLQELYEQAERMEERIETLERI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999998854
No 169
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=21.10 E-value=64 Score=19.50 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=16.2
Q ss_pred CCcce---eeeeeCCCCccccccchhhH
Q 027658 39 CDAEV---AVIIFSPRGKLSEFASSSMQ 63 (220)
Q Consensus 39 Cda~v---alivfs~~gkl~~~~s~s~~ 63 (220)
|+..| +-.-..=.|+.|-|+|..=.
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~C~ 33 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEGCK 33 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHHHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHHHH
Confidence 66666 55556667999999997433
No 170
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=20.99 E-value=1.2e+02 Score=25.99 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=26.1
Q ss_pred Hhhhh--hCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 027658 107 SKRKL--LGEGLASCTLEELQQIERQLEKSVSNIR 139 (220)
Q Consensus 107 ~~r~l--~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR 139 (220)
.+|++ |=+.=-+||+++++.+|......|..+|
T Consensus 223 ~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 223 FHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 34443 3355668999999999999999999887
No 171
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.95 E-value=3e+02 Score=22.02 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=5.5
Q ss_pred CCCCCHHHH
Q 027658 116 LASCTLEEL 124 (220)
Q Consensus 116 L~~Ls~~EL 124 (220)
..++++++.
T Consensus 100 ~~~it~~~v 108 (170)
T PRK13923 100 ISDLTLEDV 108 (170)
T ss_pred cccCCHHHH
Confidence 445666666
No 172
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=20.93 E-value=1e+02 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=38.8
Q ss_pred cchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcccc
Q 027658 26 NGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (220)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~ 74 (220)
.++|++|.||+|=--+.+.|+=||.. .++..+.+.|...|.-|-+-+.
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySEe-~P~~Lsn~GMas~l~nYYRK~N 493 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSEE-EPFFLSNPGMASLLNNYYRKSN 493 (968)
T ss_pred hhhhccccceeccCCCceeeeeeccc-CceeecCchHHHHHHHHHHhcc
Confidence 68999999999999999999999985 5555667788887777665443
No 173
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.87 E-value=3.5e+02 Score=19.88 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+|++|+.++-..-... .. ..-.+++.++++.+.++...|..--..|...+.
T Consensus 58 ~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 108 (126)
T cd04783 58 FTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELVS 108 (126)
T ss_pred CCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777654432211 01 112344555556666655555555555554443
No 174
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=20.71 E-value=33 Score=30.70 Aligned_cols=43 Identities=37% Similarity=0.482 Sum_probs=0.0
Q ss_pred ccccccchhhhhhhhhccCCcceee-eeeCCCCccccccchhhH
Q 027658 21 FSKRRNGLLKKAFELSVLCDAEVAV-IIFSPRGKLSEFASSSMQ 63 (220)
Q Consensus 21 fsKRr~GL~KKA~ELsvLCda~val-ivfs~~gkl~~~~s~s~~ 63 (220)
-+.=..|++|=+.=..-||+|.-++ -+.+..||+-+|+|+++.
T Consensus 49 ~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 49 MSRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp --------------------------------------------
T ss_pred hhhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 3333457777777778999999999 888899999999999876
No 175
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=20.65 E-value=56 Score=28.11 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=24.4
Q ss_pred ccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchh
Q 027658 19 VTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS 61 (220)
Q Consensus 19 vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s 61 (220)
+||.+|. ||+ +--+..++++.| .|+.|.|+|++
T Consensus 210 ~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~ 242 (281)
T PF12018_consen 210 WTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSRE 242 (281)
T ss_pred EEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCHH
Confidence 5677664 755 455678888888 67999999973
No 176
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.61 E-value=2.9e+02 Score=19.21 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
..+..+++.+++....|.+||..|+-+...
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566889999999999999999877664
No 177
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.33 E-value=5.3e+02 Score=21.77 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSVSNIRAR 141 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~R 141 (220)
-+..++..|...++.+-.++.+-
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776666665555443
No 178
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.24 E-value=1.2e+02 Score=18.59 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 141 RKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 141 RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
+.+..+.-.|..+..+...|..||..|+.++
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445566677788888888888999888765
No 179
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.11 E-value=2.1e+02 Score=21.14 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+..|+..||+....+.+||..|+-....
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~ 47 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEK 47 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 3468999999999999999999865543
No 180
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=20.05 E-value=25 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=20.8
Q ss_pred eeeeeeCCCCccccccchhhHHHHHHhhccccc
Q 027658 43 VAVIIFSPRGKLSEFASSSMQETIERYLKHTKD 75 (220)
Q Consensus 43 valivfs~~gkl~~~~s~s~~~IleRY~~~~~~ 75 (220)
|++|||.| +|+++.+. ++-+-+..|++...+
T Consensus 14 i~llvFGp-~KLP~l~r-~lG~~i~~Fk~~~~~ 44 (51)
T PRK01470 14 IIFVLFGA-GKLPQVMS-DLAKGLKAFKDGMKD 44 (51)
T ss_pred HHHHhcCc-hHhHHHHH-HHHHHHHHHHHHhcc
Confidence 78999998 58887655 344556666665433
Done!