Query 027658
Match_columns 220
No_of_seqs 205 out of 1568
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.1E-40 7.2E-45 228.6 1.0 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 5.6E-40 1.9E-44 231.8 1.3 77 2-78 1-77 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.2E-38 1.1E-42 226.5 0.2 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 4.4E-38 1.5E-42 223.0 -0.8 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 2E-37 6.8E-42 223.7 -0.4 69 1-69 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 89.6 2.8 9.6E-05 28.3 8.1 43 119-166 3-45 (81)
7 2w6a_A ARF GTPase-activating p 82.0 7.4 0.00025 24.5 8.7 53 117-169 8-62 (63)
8 1dip_A Delta-sleep-inducing pe 81.3 9.2 0.00032 25.1 7.6 31 144-174 18-48 (78)
9 1j1d_C Troponin I, TNI; THIN f 74.8 23 0.00077 26.1 10.2 33 114-146 53-85 (133)
10 2dgc_A Protein (GCN4); basic d 72.7 13 0.00044 23.6 6.0 35 135-173 21-55 (63)
11 3s9g_A Protein hexim1; cyclin 69.6 18 0.00062 25.1 6.4 27 147-173 64-90 (104)
12 2yy0_A C-MYC-binding protein; 69.4 11 0.00036 23.2 4.8 29 145-173 23-51 (53)
13 1j1e_C Troponin I, TNI; THIN f 68.5 39 0.0013 26.1 9.2 47 114-160 53-105 (180)
14 2dfs_A Myosin-5A; myosin-V, in 64.1 85 0.0029 31.0 12.6 23 151-173 1019-1041(1080)
15 1a93_B MAX protein, coiled coi 62.8 14 0.00047 20.6 3.9 26 140-165 6-31 (34)
16 1gd2_E Transcription factor PA 62.2 23 0.00079 23.0 5.7 40 133-172 18-60 (70)
17 1dh3_A Transcription factor CR 62.2 25 0.00084 21.6 6.0 34 137-174 15-48 (55)
18 2wt7_A Proto-oncogene protein 61.9 27 0.00091 21.9 6.0 34 136-173 15-48 (63)
19 2oqq_A Transcription factor HY 60.3 23 0.00077 20.6 5.5 27 146-172 15-41 (42)
20 1t2k_D Cyclic-AMP-dependent tr 60.2 28 0.00095 21.6 5.8 33 137-173 15-47 (61)
21 3nmd_A CGMP dependent protein 59.1 35 0.0012 22.3 7.3 45 124-173 21-65 (72)
22 2v71_A Nuclear distribution pr 57.1 67 0.0023 25.0 13.2 22 150-171 90-111 (189)
23 1ci6_A Transcription factor AT 55.7 35 0.0012 21.4 6.0 25 148-172 23-47 (63)
24 1jnm_A Proto-oncogene C-JUN; B 51.3 42 0.0014 20.9 6.0 34 136-173 14-47 (62)
25 3gp4_A Transcriptional regulat 50.9 55 0.0019 23.9 6.9 54 118-172 59-112 (142)
26 3oja_B Anopheles plasmodium-re 49.9 1.4E+02 0.0047 26.6 10.8 30 144-173 547-576 (597)
27 2rpa_A Katanin P60 ATPase-cont 48.5 11 0.00037 25.2 2.3 57 29-104 16-72 (78)
28 3hnw_A Uncharacterized protein 47.2 82 0.0028 23.1 8.5 27 146-172 108-134 (138)
29 2oxj_A Hybrid alpha/beta pepti 44.4 28 0.00097 19.2 3.2 18 153-170 6-23 (34)
30 1ytz_T Troponin T; muscle, THI 44.2 80 0.0027 22.2 7.7 33 114-146 37-69 (107)
31 1go4_E MAD1 (mitotic arrest de 43.4 13 0.00046 25.9 2.2 22 87-108 21-42 (100)
32 1j1d_B Troponin T, TNT; THIN f 43.3 83 0.0028 22.1 6.9 32 115-146 38-69 (106)
33 2l5g_A GPS2 protein, G protein 42.7 38 0.0013 19.1 3.6 19 149-167 16-34 (38)
34 1m2d_A [2Fe-2S] ferredoxin; th 42.6 14 0.00049 25.7 2.4 32 39-71 59-91 (110)
35 3gpv_A Transcriptional regulat 42.1 89 0.003 22.8 6.9 55 118-173 73-127 (148)
36 3s4r_A Vimentin; alpha-helix, 41.9 79 0.0027 21.4 11.4 72 86-173 10-81 (93)
37 2aze_A Transcription factor DP 40.3 1.2E+02 0.004 22.8 8.2 50 119-170 2-51 (155)
38 2zqm_A Prefoldin beta subunit 38.8 93 0.0032 21.4 9.9 27 147-173 83-109 (117)
39 1t6f_A Geminin; coiled-coil, c 38.3 52 0.0018 18.3 4.5 25 144-168 10-34 (37)
40 2ky6_A Mediator of RNA polymer 37.1 30 0.001 26.3 3.4 36 36-71 116-159 (166)
41 3m48_A General control protein 36.5 37 0.0013 18.6 2.8 19 153-171 5-23 (33)
42 1kd8_B GABH BLL, GCN4 acid bas 35.3 47 0.0016 18.5 3.2 18 153-170 13-30 (36)
43 3aei_A Prefoldin beta subunit 34.8 98 0.0033 20.5 5.3 26 144-169 71-96 (99)
44 1uii_A Geminin; human, DNA rep 34.3 85 0.0029 21.0 5.0 27 145-171 50-76 (83)
45 3c3f_A Alpha/beta peptide with 32.4 57 0.002 17.9 3.2 6 162-167 15-20 (34)
46 2zvv_Y Cyclin-dependent kinase 32.0 11 0.00036 19.3 0.2 12 15-26 15-26 (26)
47 4gfh_A DNA topoisomerase 2; to 31.8 1.9E+02 0.0066 28.8 9.2 43 26-72 958-1000(1177)
48 1wlq_A Geminin; coiled-coil; 2 31.1 70 0.0024 21.4 4.1 24 146-169 43-66 (83)
49 3hnw_A Uncharacterized protein 30.9 1.5E+02 0.0053 21.5 11.3 20 152-171 107-126 (138)
50 1p9i_A Cortexillin I/GCN4 hybr 30.6 48 0.0016 17.3 2.5 16 158-173 9-24 (31)
51 3mq7_A Bone marrow stromal ant 29.7 1.5E+02 0.0052 21.1 7.3 36 142-177 72-107 (121)
52 1go4_E MAD1 (mitotic arrest de 29.4 71 0.0024 22.2 4.1 25 148-172 12-36 (100)
53 3nrf_A APAG protein; structura 29.3 11 0.00036 26.7 -0.2 43 11-58 21-63 (106)
54 3na7_A HP0958; flagellar bioge 29.3 2.2E+02 0.0074 22.7 9.7 22 120-141 88-109 (256)
55 1gk7_A Vimentin; intermediate 28.4 85 0.0029 17.7 5.7 26 148-173 13-38 (39)
56 3q4f_C DNA repair protein XRCC 28.4 72 0.0025 24.6 4.3 24 148-171 161-184 (186)
57 2zxx_A Geminin; coiled-coil, c 28.3 77 0.0026 21.0 3.9 25 145-169 38-62 (79)
58 1m1j_B Fibrinogen beta chain; 28.3 3.1E+02 0.011 24.3 14.2 41 27-72 55-97 (464)
59 2dfs_A Myosin-5A; myosin-V, in 28.3 4.4E+02 0.015 25.9 12.5 12 25-36 923-934 (1080)
60 3m9b_A Proteasome-associated A 27.6 1.1E+02 0.0037 24.9 5.5 42 123-169 55-96 (251)
61 1t2k_D Cyclic-AMP-dependent tr 27.3 1.1E+02 0.0038 18.7 5.6 27 145-171 33-59 (61)
62 2jo8_A Serine/threonine-protei 27.2 68 0.0023 19.4 3.2 19 116-134 7-25 (51)
63 1hjb_A Ccaat/enhancer binding 27.1 1.4E+02 0.005 20.0 5.9 21 152-172 54-74 (87)
64 3ghg_A Fibrinogen alpha chain; 26.4 3.6E+02 0.012 24.4 11.6 43 130-173 114-156 (562)
65 1deb_A APC protein, adenomatou 24.7 92 0.0031 18.8 3.4 19 155-173 10-28 (54)
66 3s4r_A Vimentin; alpha-helix, 24.6 1.4E+02 0.0048 20.1 5.0 35 122-156 9-45 (93)
67 3oja_B Anopheles plasmodium-re 24.5 3.7E+02 0.013 23.7 13.8 32 142-173 524-555 (597)
68 1nkp_B MAX protein, MYC proto- 24.4 1.5E+02 0.0051 19.2 6.5 28 146-173 52-79 (83)
69 1q08_A Zn(II)-responsive regul 23.6 1.6E+02 0.0055 19.3 7.6 55 118-173 16-71 (99)
70 3jrn_A AT1G72930 protein; TIR 23.3 53 0.0018 25.1 2.8 33 38-70 60-92 (176)
71 1am9_A Srebp-1A, protein (ster 23.0 1.1E+02 0.0039 19.9 4.2 26 148-173 50-75 (82)
72 2ygg_A Sodium/hydrogen exchang 22.5 1.2E+02 0.004 19.6 3.8 24 119-142 4-27 (70)
73 1tu3_F RAB GTPase binding effe 22.2 1.6E+02 0.0053 19.3 4.4 41 87-140 14-54 (79)
74 3w03_C DNA repair protein XRCC 22.2 1.1E+02 0.0038 23.6 4.5 28 145-172 149-176 (184)
75 3oja_A Leucine-rich immune mol 22.1 3.8E+02 0.013 23.1 12.8 23 150-172 437-459 (487)
76 3nzj_F Proteasome component C1 21.8 19 0.00064 29.9 -0.1 20 37-56 4-23 (288)
77 1g6u_A Domain swapped dimer; d 21.8 1.2E+02 0.0042 17.2 4.7 19 117-135 15-33 (48)
78 3h4p_A Proteasome subunit alph 21.6 21 0.00071 29.1 0.2 20 40-59 11-32 (264)
79 1ci6_A Transcription factor AT 21.6 1.5E+02 0.0053 18.3 5.5 26 146-171 35-60 (63)
80 3i00_A HIP-I, huntingtin-inter 21.5 2.2E+02 0.0077 20.2 8.9 46 85-139 15-60 (120)
81 3hvz_A Uncharacterized protein 20.9 58 0.002 21.3 2.3 24 44-67 7-31 (78)
82 2wvr_A Geminin; DNA replicatio 20.8 1.6E+02 0.0053 23.2 5.0 28 145-172 119-146 (209)
83 3fg8_A Uncharacterized protein 20.3 67 0.0023 21.2 2.7 31 36-67 16-46 (118)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.1e-40 Score=228.57 Aligned_cols=74 Identities=47% Similarity=0.760 Sum_probs=70.3
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhccccc
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKD 75 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~ 75 (220)
||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|+.||+||+..++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987653
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=5.6e-40 Score=231.82 Aligned_cols=77 Identities=45% Similarity=0.735 Sum_probs=74.0
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcccccccC
Q 027658 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRN 78 (220)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~ 78 (220)
||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+||+.+++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~ 77 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998766544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.2e-38 Score=226.51 Aligned_cols=71 Identities=38% Similarity=0.596 Sum_probs=69.5
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhc
Q 027658 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (220)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~ 71 (220)
|||+||+|++|+|.++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||++..||++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=4.4e-38 Score=222.99 Aligned_cols=70 Identities=37% Similarity=0.521 Sum_probs=68.4
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhh
Q 027658 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYL 70 (220)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~ 70 (220)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=2e-37 Score=223.74 Aligned_cols=69 Identities=38% Similarity=0.535 Sum_probs=67.7
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHh
Q 027658 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY 69 (220)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY 69 (220)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999973
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.61 E-value=2.8 Score=28.28 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 166 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~ 166 (220)
+|++=|.+||..+..++..| .++.-+|+.||.+...|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999888 56777778888877775555554
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=81.97 E-value=7.4 Score=24.45 Aligned_cols=53 Identities=23% Similarity=0.435 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 117 ASCTLEELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L~~IR~--RK~~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
+..++.|..++.+.|-.+=.+|.. +-+.-+.+++..++++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 457888888888777766655532 22334567888899999999999999873
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.29 E-value=9.2 Score=25.13 Aligned_cols=31 Identities=42% Similarity=0.505 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
+.+.++|.+|-.+...|+.||..|+.-...+
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4678899999999999999999998755543
No 9
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=74.85 E-value=23 Score=26.09 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (220)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll 146 (220)
-+++++|.++|+++-..|-..+..+-+-|..+-
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 479999999999999999999999988887664
No 10
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.65 E-value=13 Score=23.60 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 135 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 135 L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
-.+.|.|| .+.+..|..+...|..+|..|...+..
T Consensus 21 ArrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 21 ARRSRARK----LQRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 345667788888888888888877664
No 11
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.59 E-value=18 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 147 NEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 147 ~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
..+|..|..+...|..||..|...-+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667777777777788777765443
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.41 E-value=11 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.+..+...|+.|...|.+++..|+.++..
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567778888888899999999888763
No 13
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=68.47 E-value=39 Score=26.13 Aligned_cols=47 Identities=30% Similarity=0.342 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 027658 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKGKVL 160 (220)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~------~qi~~lk~ke~~l 160 (220)
-+|++||.++|+++-..|-..+..+-+-|..+-. -+|..|+.++..|
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 3789999999999999999999999888877633 2455555555444
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.09 E-value=85 Score=31.00 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027658 151 AQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 151 ~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.|+.+...|.+||..|+.++.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888877765
No 15
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.75 E-value=14 Score=20.57 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 140 ARKNQVFNEQIAQLKEKGKVLEAENT 165 (220)
Q Consensus 140 ~RK~~ll~~qi~~lk~ke~~l~eeN~ 165 (220)
.||+.-....|+.|+++...|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 36777777788888877666666543
No 16
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.17 E-value=23 Score=22.98 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 133 KSVSNIRARKNQVFN---EQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 133 ~~L~~IR~RK~~ll~---~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
.+-...|.||.+-+. .++..|......|..||..|+..+.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666655433 2444444444445556666655544
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.16 E-value=25 Score=21.60 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658 137 NIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 174 (220)
Q Consensus 137 ~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~ 174 (220)
.-|.||. ..++.|..+...|..+|..|..++...
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 445677888888999999999888753
No 18
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.91 E-value=27 Score=21.95 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 136 SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 136 ~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.+-|.||. +.+..|..+...|..+|..|...+..
T Consensus 15 ~rcR~rKk----~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 15 AKCRNRRR----ELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455553 34557777777788888888777654
No 19
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.33 E-value=23 Score=20.58 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+.....+|..+...|+.||..|+..+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344556777888889999999997653
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.25 E-value=28 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 137 NIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 137 ~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.-|.||.+ .++.|..+...|..+|..|..++..
T Consensus 15 k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 15 RSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555533 3446666666666666666666543
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.06 E-value=35 Score=22.32 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 124 LQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 124 L~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+++|+..|......||.+-. + |..|.+......++...|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~-~----I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDA-L----IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999987643 2 445555555555566667666643
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.14 E-value=67 Score=25.00 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027658 150 IAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 150 i~~lk~ke~~l~eeN~~L~~~~ 171 (220)
|..|++....|...+..|..++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555444
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.75 E-value=35 Score=21.42 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 148 EQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 148 ~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+.++.|..+...|..+|..|..++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665554
No 24
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.28 E-value=42 Score=20.89 Aligned_cols=34 Identities=47% Similarity=0.587 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 136 SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 136 ~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.+-|.||. +.+..|..+...|..+|..|..++..
T Consensus 14 ~k~R~rKk----~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 14 SKSRKRKL----ERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455553 34557777777888888888777664
No 25
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=50.89 E-value=55 Score=23.88 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
++|++++..+-...+.+-..+..+ .+++.+++..+.++...|......|..++.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777665443321112111 234455555555555555554444444444
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.95 E-value=1.4e+02 Score=26.65 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.-+..+++..+++...+.+|+..+..++..
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666676666665554
No 27
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.50 E-value=11 Score=25.15 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=37.6
Q ss_pred hhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHH
Q 027658 29 LKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELL 104 (220)
Q Consensus 29 ~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~l 104 (220)
+|+|+|.+.+++=|.|++.|. ++-.-|+||.....+ ....++|+.=...+..+.+.+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~d--------~~~r~kW~~~~~ei~~E~~~V 72 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVKD--------THLRQKWQQVWQEINVEAKQV 72 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCSC--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcCC--------HHHHHhHHHHHHHHHHHHHHH
Confidence 589999999999888877665 467778888876532 233455654444444444443
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.16 E-value=82 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+..+++.|+++...|++++..|...+.
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777766665554
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=44.41 E-value=28 Score=19.15 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027658 153 LKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 153 lk~ke~~l~eeN~~L~~~ 170 (220)
|..|...|..+|..|...
T Consensus 6 LE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHH
Confidence 333444444444444433
No 30
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=44.23 E-value=80 Score=22.15 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (220)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll 146 (220)
-++++||.++|+++-..|-..+..+-+-|-.+-
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 378999999999999999999999988887764
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.38 E-value=13 Score=25.93 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 027658 87 MQHLKHEAANMVKKIELLEVSK 108 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~ 108 (220)
++.|..+..+|+++++.|+..+
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665543
No 32
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=43.31 E-value=83 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 115 GLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (220)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll 146 (220)
++++||.++|+++-..|-..+..+-+-|-.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 78999999999999999999999988887764
No 33
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.70 E-value=38 Score=19.08 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027658 149 QIAQLKEKGKVLEAENTRL 167 (220)
Q Consensus 149 qi~~lk~ke~~l~eeN~~L 167 (220)
||..|+.+...|.+|.-+|
T Consensus 16 Qi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445544444444333
No 34
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=42.60 E-value=14 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCcceeeeeeCCCCccccccch-hhHHHHHHhhc
Q 027658 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERYLK 71 (220)
Q Consensus 39 Cda~valivfs~~gkl~~~~s~-s~~~IleRY~~ 71 (220)
|+---.++|+ |+|..|...++ .+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5555556666 88888877777 89999999754
No 35
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.10 E-value=89 Score=22.82 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
++|++++..+-.....+-..+.. -.+++.+++..+.++...|......|..++..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888876644332222222 22466677777777777777777777776664
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.94 E-value=79 Score=21.44 Aligned_cols=72 Identities=25% Similarity=0.463 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 86 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENT 165 (220)
Q Consensus 86 ~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~ 165 (220)
.++.|...++..-.++..|+..++.+. .++..+.. .-.++-..++...|..|+++...+..++.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le---------~~i~~l~~-------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~ 73 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILL---------AELEQLKG-------QGKSRLGDLYEEEMRELRRQVDQLTNDKA 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhh-------ccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777677777776655542 12222221 11234445778888899988888888888
Q ss_pred HHHHHHhc
Q 027658 166 RLEEKCGM 173 (220)
Q Consensus 166 ~L~~~~~~ 173 (220)
.|.-.+..
T Consensus 74 ~l~~e~dn 81 (93)
T 3s4r_A 74 RVEVERDN 81 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766543
No 37
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=40.25 E-value=1.2e+02 Score=22.85 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~ 170 (220)
-|+.|...|+..-...+.+|+.++.+|- ++...+---+.|.+-|..+..+
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 3688999999999999999988776542 2222333356778888877653
No 38
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.80 E-value=93 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 147 NEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 147 ~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
...|+.|.++...+..+-..|+..+.+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665554
No 39
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.34 E-value=52 Score=18.33 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLE 168 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~ 168 (220)
+.++..|+.-......|.++|..|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455556655566677788888775
No 40
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=37.10 E-value=30 Score=26.32 Aligned_cols=36 Identities=14% Similarity=0.382 Sum_probs=27.1
Q ss_pred hccCCcceeeeeeCCCCcccc-ccch-------hhHHHHHHhhc
Q 027658 36 SVLCDAEVAVIIFSPRGKLSE-FASS-------SMQETIERYLK 71 (220)
Q Consensus 36 svLCda~valivfs~~gkl~~-~~s~-------s~~~IleRY~~ 71 (220)
+.-|++.|-+++|||.-+.|. |... .++.||..|+.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 556999999999999988876 5442 46667766655
No 41
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.52 E-value=37 Score=18.61 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027658 153 LKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 153 lk~ke~~l~eeN~~L~~~~ 171 (220)
|..|...|..+|..|...+
T Consensus 5 LE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3344444455555554443
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.33 E-value=47 Score=18.51 Aligned_cols=18 Identities=39% Similarity=0.363 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027658 153 LKEKGKVLEAENTRLEEK 170 (220)
Q Consensus 153 lk~ke~~l~eeN~~L~~~ 170 (220)
|-.+...|..|-..|+..
T Consensus 13 Ll~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 13 LKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 333333344444444433
No 43
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=34.79 E-value=98 Score=20.47 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 144 QVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 144 ~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
-.+..+|+.|+++++...++-..|+.
T Consensus 71 l~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 71 LVYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46678999999999999998877753
No 44
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.34 E-value=85 Score=21.01 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
-+.++|+.++.....|.++|..|+.-.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777776543
No 45
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.39 E-value=57 Score=17.89 Aligned_cols=6 Identities=0% Similarity=-0.169 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027658 162 AENTRL 167 (220)
Q Consensus 162 eeN~~L 167 (220)
.+|..|
T Consensus 15 ~~~~~L 20 (34)
T 3c3f_A 15 SXLYHX 20 (34)
T ss_dssp HHHHHH
T ss_pred hhhhHH
Confidence 333333
No 46
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=32.02 E-value=11 Score=19.28 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.5
Q ss_pred CCcccccccccc
Q 027658 15 TSRQVTFSKRRN 26 (220)
Q Consensus 15 ~~R~vtfsKRr~ 26 (220)
+.|++.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 467788888763
No 47
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=31.78 E-value=1.9e+02 Score=28.81 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=27.5
Q ss_pred cchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcc
Q 027658 26 NGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKH 72 (220)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~ 72 (220)
.+|+|.- .|.+-.++ .-+++|.+.|++..|.+ +++||..|..+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~--l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYNS--VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECSS--HHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcCC--HHHHHHHHHHH
Confidence 3555543 34333322 25788999999888865 68888887654
No 48
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.09 E-value=70 Score=21.41 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
+.++|+.++.....|.++|..|+.
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666667766654
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.86 E-value=1.5e+02 Score=21.52 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027658 152 QLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 152 ~lk~ke~~l~eeN~~L~~~~ 171 (220)
.+++....|.+++..|..++
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 50
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=30.63 E-value=48 Score=17.27 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 027658 158 KVLEAENTRLEEKCGM 173 (220)
Q Consensus 158 ~~l~eeN~~L~~~~~~ 173 (220)
..|.-||++|+.++++
T Consensus 9 asleaenkqlkakvee 24 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466677777776654
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.70 E-value=1.5e+02 Score=21.09 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027658 142 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQ 177 (220)
Q Consensus 142 K~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~~~~ 177 (220)
+.+-+..+|..|.++.+....+-..|++.....+|.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 456677899999999999888999999888765543
No 52
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.43 E-value=71 Score=22.19 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 148 EQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 148 ~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
+++..++++...|..||..|+.+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 53
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=29.33 E-value=11 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.7
Q ss_pred ecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCcccccc
Q 027658 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFA 58 (220)
Q Consensus 11 Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~ 58 (220)
|.+..-...||-=.-..|.++.-+|+.+ |++.|+|.|+-|-.-
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~ld 63 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRLD 63 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEec
Confidence 3444555667777778888999999854 599999999866543
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.28 E-value=2.2e+02 Score=22.69 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 027658 120 TLEELQQIERQLEKSVSNIRAR 141 (220)
Q Consensus 120 s~~EL~~LE~~Le~~L~~IR~R 141 (220)
+.+|+..|...++..-..+..-
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777666555555443
No 55
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.43 E-value=85 Score=17.75 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 148 EQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 148 ~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.....=.|++.|+++|..|..++..
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444446788899999999888753
No 56
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=28.36 E-value=72 Score=24.64 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 148 EQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 148 ~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
++|..|+.+...|++||..|....
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888889999999998643
No 57
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.33 E-value=77 Score=21.04 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
.++.+|+.++.....|.++|..|..
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666654
No 58
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.32 E-value=3.1e+02 Score=24.25 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=19.7
Q ss_pred chhhhhhhhhccCCcceeeeeeCCCCccccccch--hhHHHHHHhhcc
Q 027658 27 GLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLKH 72 (220)
Q Consensus 27 GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~--s~~~IleRY~~~ 72 (220)
|+.||.-|.. -||.-|.+ +++.+=.||.. .+.+.|.+|+..
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhh
Confidence 5567776665 66666543 44444455543 677778777664
No 59
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.30 E-value=4.4e+02 Score=25.94 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=0.0
Q ss_pred ccchhhhhhhhh
Q 027658 25 RNGLLKKAFELS 36 (220)
Q Consensus 25 r~GL~KKA~ELs 36 (220)
..+|-+|..||.
T Consensus 923 ~~~LE~kl~eLq 934 (1080)
T 2dfs_A 923 HIGLENKIMQLQ 934 (1080)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 60
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.62 E-value=1.1e+02 Score=24.91 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 123 ELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 169 (220)
Q Consensus 123 EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~ 169 (220)
.+.+|+.+++.. ..+++.+.+.+..++++...|.+|+..|..
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355555555332 334566777788888888888888887763
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.35 E-value=1.1e+02 Score=18.72 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
.+..+...|+.+...|.+|+..|+..+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777788888777655
No 62
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.24 E-value=68 Score=19.43 Aligned_cols=19 Identities=37% Similarity=0.364 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027658 116 LASCTLEELQQIERQLEKS 134 (220)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~~ 134 (220)
|..+|++||++.-..|+..
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~ 25 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPM 25 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHH
Confidence 5668999988765555443
No 63
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.07 E-value=1.4e+02 Score=19.97 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027658 152 QLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 152 ~lk~ke~~l~eeN~~L~~~~~ 172 (220)
.|+.+...|..|...|+..+-
T Consensus 54 ~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 54 RLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.41 E-value=3.6e+02 Score=24.35 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 130 QLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 130 ~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
.|+..+..|+.+-+..+ .+|..||.-...+..+-+.|.--+..
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444 56666666666666666666555443
No 65
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.71 E-value=92 Score=18.76 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027658 155 EKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 155 ~ke~~l~eeN~~L~~~~~~ 173 (220)
+++..|..||..|+..+..
T Consensus 10 ~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 10 KQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHh
Confidence 3444555566666666554
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.65 E-value=1.4e+02 Score=20.14 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 027658 122 EELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEK 156 (220)
Q Consensus 122 ~EL~~LE~~Le~~L~~IR~--RK~~ll~~qi~~lk~k 156 (220)
++|+.|-..|-.-+.+||. ..+..+..+|..++.+
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577777778888877773 4555666666666654
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.50 E-value=3.7e+02 Score=23.75 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 142 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 142 K~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.+.+.++++..+++...++++...+.++++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 34444445544444444455555555555443
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.44 E-value=1.5e+02 Score=19.23 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+.+++..|+.....|..+|..|..++..
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777788888888888765
No 69
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.56 E-value=1.6e+02 Score=19.31 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 118 SCTLEELQQIERQLEKSVS-NIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~-~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
++|++|+..+-......-. .+ ..-..++.+++..+.++...|...-..|...+..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888887654321100 11 1223566677777777777777766666666553
No 70
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=23.30 E-value=53 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=25.6
Q ss_pred cCCcceeeeeeCCCCccccccchhhHHHHHHhh
Q 027658 38 LCDAEVAVIIFSPRGKLSEFASSSMQETIERYL 70 (220)
Q Consensus 38 LCda~valivfs~~gkl~~~~s~s~~~IleRY~ 70 (220)
+.++.+++||||++=--..||-..+..|++...
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 467899999999985555577778888888754
No 71
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=23.04 E-value=1.1e+02 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658 148 EQIAQLKEKGKVLEAENTRLEEKCGM 173 (220)
Q Consensus 148 ~qi~~lk~ke~~l~eeN~~L~~~~~~ 173 (220)
+-|..|+.....|.+++..|+..+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777788888888888887764
No 72
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=22.49 E-value=1.2e+02 Score=19.65 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 027658 119 CTLEELQQIERQLEKSVSNIRARK 142 (220)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~IR~RK 142 (220)
|+.+++.++-+-|...|.+||.|-
T Consensus 4 ls~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 4 LSKDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999774
No 73
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=22.24 E-value=1.6e+02 Score=19.31 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027658 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 140 (220)
Q Consensus 87 ~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~ 140 (220)
...++..+..|+.+++..+..+| |.-.|.+.|...|.+||.
T Consensus 14 ~~e~k~kv~~LQ~eLdtsE~VQr-------------DFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 14 MFEEKNKAQRLQTELDVSEQVQR-------------DFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp -------CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHh
Confidence 33456667778888877777665 445777888888888875
No 74
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.18 E-value=1.1e+02 Score=23.60 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
-+++.+..|+.+...|.++|..|+....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888876544
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.10 E-value=3.8e+02 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027658 150 IAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 150 i~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
.+..+..+..+.++|..|++.+.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhh
Confidence 34445555666666666665554
No 76
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=21.79 E-value=19 Score=29.91 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.6
Q ss_pred ccCCcceeeeeeCCCCcccc
Q 027658 37 VLCDAEVAVIIFSPRGKLSE 56 (220)
Q Consensus 37 vLCda~valivfs~~gkl~~ 56 (220)
+-.+-|-++-+|||.|++|.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 44556778889999999986
No 77
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.77 E-value=1.2e+02 Score=17.24 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027658 117 ASCTLEELQQIERQLEKSV 135 (220)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L 135 (220)
+++|.+||..||..|...-
T Consensus 15 egfspeelaaleselqale 33 (48)
T 1g6u_A 15 EGFSPEELAALESELQALE 33 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 3588999999988776543
No 78
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=21.62 E-value=21 Score=29.11 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=12.8
Q ss_pred CcceeeeeeCCCCcccc--ccc
Q 027658 40 DAEVAVIIFSPRGKLSE--FAS 59 (220)
Q Consensus 40 da~valivfs~~gkl~~--~~s 59 (220)
+-|-++-+|||.|++|. |+.
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~ 32 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYAR 32 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhHH
Confidence 34677889999999986 654
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.56 E-value=1.5e+02 Score=18.33 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658 146 FNEQIAQLKEKGKVLEAENTRLEEKC 171 (220)
Q Consensus 146 l~~qi~~lk~ke~~l~eeN~~L~~~~ 171 (220)
+..+...|+.+...|..|+..|+.-+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666665543
No 80
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.45 E-value=2.2e+02 Score=20.19 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 027658 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIR 139 (220)
Q Consensus 85 ~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR 139 (220)
..|+.|+.++..|+.+++.+....+.+ +.+|..=-..|+.-|..-|
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~---------v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV---------VLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 457889999999999998887766555 3445544444444444444
No 81
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=20.86 E-value=58 Score=21.34 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=18.2
Q ss_pred eeeeeCCCCccccccch-hhHHHHH
Q 027658 44 AVIIFSPRGKLSEFASS-SMQETIE 67 (220)
Q Consensus 44 alivfs~~gkl~~~~s~-s~~~Ile 67 (220)
-+.||.|+|..++++.. .+.++..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHH
Confidence 36789999999998875 5555543
No 82
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.78 E-value=1.6e+02 Score=23.17 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658 145 VFNEQIAQLKEKGKVLEAENTRLEEKCG 172 (220)
Q Consensus 145 ll~~qi~~lk~ke~~l~eeN~~L~~~~~ 172 (220)
-|+++|+.++.....|.++|..|+.-.+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666554433
No 83
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=20.33 E-value=67 Score=21.19 Aligned_cols=31 Identities=3% Similarity=0.189 Sum_probs=23.6
Q ss_pred hccCCcceeeeeeCCCCccccccchhhHHHHH
Q 027658 36 SVLCDAEVAVIIFSPRGKLSEFASSSMQETIE 67 (220)
Q Consensus 36 svLCda~valivfs~~gkl~~~~s~s~~~Ile 67 (220)
+++..+..++++++++|+.. |.++.+..++.
T Consensus 16 ~il~~~~~~i~~~D~~g~i~-~~N~a~~~l~g 46 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRII-YVNSGCLRHVR 46 (118)
T ss_dssp CSSSCTTCEEEEECTTCBEE-EECHHHHHHHT
T ss_pred HHHhhCCceEEEECCCCeEE-EECHHHHHHhC
Confidence 57888899999999998755 66776665553
Done!