Query 027659
Match_columns 220
No_of_seqs 248 out of 1634
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 13:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 2.9E-32 6.3E-37 210.7 11.0 166 20-197 3-172 (173)
2 KOG3201 Uncharacterized conser 99.8 3E-21 6.6E-26 142.9 4.9 156 33-206 4-166 (201)
3 COG4123 Predicted O-methyltran 99.8 2.6E-19 5.6E-24 143.7 14.6 158 17-204 12-192 (248)
4 KOG2793 Putative N2,N2-dimethy 99.8 2.2E-19 4.7E-24 144.1 13.7 169 31-205 49-227 (248)
5 PF05175 MTS: Methyltransferas 99.8 1.5E-18 3.2E-23 133.9 15.6 135 22-184 1-144 (170)
6 PF06325 PrmA: Ribosomal prote 99.8 2.5E-18 5.4E-23 142.5 13.1 154 19-205 126-282 (295)
7 COG3897 Predicted methyltransf 99.8 5.8E-19 1.3E-23 134.9 7.6 128 32-185 54-184 (218)
8 COG2264 PrmA Ribosomal protein 99.8 8.5E-18 1.9E-22 138.3 15.0 157 21-207 129-289 (300)
9 COG2227 UbiG 2-polyprenyl-3-me 99.8 5.2E-18 1.1E-22 134.3 9.8 108 63-186 58-167 (243)
10 PRK15001 SAM-dependent 23S rib 99.7 1.1E-16 2.3E-21 137.1 18.1 145 12-181 188-341 (378)
11 TIGR00537 hemK_rel_arch HemK-r 99.7 2.3E-16 5E-21 122.6 16.4 135 42-207 8-166 (179)
12 COG2813 RsmC 16S RNA G1207 met 99.7 2.4E-16 5.2E-21 129.2 16.4 156 18-207 124-289 (300)
13 PF12847 Methyltransf_18: Meth 99.7 1.2E-16 2.6E-21 114.4 10.0 103 64-180 1-111 (112)
14 TIGR00406 prmA ribosomal prote 99.7 1.1E-15 2.4E-20 127.3 16.3 155 21-206 126-283 (288)
15 PRK14967 putative methyltransf 99.7 4.2E-15 9.2E-20 119.5 17.6 153 23-206 7-184 (223)
16 KOG1270 Methyltransferases [Co 99.7 7.4E-17 1.6E-21 128.8 6.4 111 63-185 88-200 (282)
17 PF13847 Methyltransf_31: Meth 99.7 9.4E-16 2E-20 116.0 12.2 109 64-186 3-116 (152)
18 PLN02396 hexaprenyldihydroxybe 99.7 4.5E-16 9.7E-21 131.0 10.9 108 63-184 130-239 (322)
19 PRK00517 prmA ribosomal protei 99.6 8.9E-15 1.9E-19 119.6 15.4 149 21-206 86-238 (250)
20 TIGR00138 gidB 16S rRNA methyl 99.6 1E-14 2.2E-19 113.5 14.6 129 63-210 41-173 (181)
21 PRK11207 tellurite resistance 99.6 6.2E-15 1.3E-19 116.3 13.0 100 64-179 30-133 (197)
22 PRK11036 putative S-adenosyl-L 99.6 4.4E-15 9.5E-20 121.7 11.4 107 64-183 44-152 (255)
23 PRK14968 putative methyltransf 99.6 2.4E-14 5.1E-19 111.6 14.9 141 39-206 9-173 (188)
24 PLN02244 tocopherol O-methyltr 99.6 2.5E-14 5.4E-19 121.8 14.9 104 63-180 117-223 (340)
25 TIGR00477 tehB tellurite resis 99.6 1.8E-14 4E-19 113.5 12.4 99 64-179 30-132 (195)
26 PRK09489 rsmC 16S ribosomal RN 99.6 4.9E-14 1.1E-18 119.8 15.6 131 22-182 166-305 (342)
27 COG2890 HemK Methylase of poly 99.6 9.9E-14 2.1E-18 114.9 16.1 99 67-182 113-240 (280)
28 PRK00107 gidB 16S rRNA methylt 99.6 9.3E-14 2E-18 108.5 14.9 118 64-203 45-166 (187)
29 TIGR03704 PrmC_rel_meth putati 99.6 9.4E-14 2E-18 113.5 15.5 144 41-209 69-243 (251)
30 PRK15128 23S rRNA m(5)C1962 me 99.6 1.4E-13 3.1E-18 119.0 17.2 146 64-220 220-387 (396)
31 PF01209 Ubie_methyltran: ubiE 99.6 3.9E-14 8.5E-19 114.3 12.9 108 63-185 46-158 (233)
32 COG2263 Predicted RNA methylas 99.6 6.1E-14 1.3E-18 107.3 13.1 75 61-154 42-118 (198)
33 PF08241 Methyltransf_11: Meth 99.6 8.9E-15 1.9E-19 101.0 7.1 92 69-178 1-95 (95)
34 COG2226 UbiE Methylase involve 99.6 7E-14 1.5E-18 112.3 13.1 106 64-184 51-160 (238)
35 TIGR00452 methyltransferase, p 99.6 7.7E-14 1.7E-18 117.0 13.2 120 38-180 103-225 (314)
36 PF13659 Methyltransf_26: Meth 99.5 1.2E-14 2.6E-19 104.9 6.9 105 65-181 1-116 (117)
37 PRK15068 tRNA mo(5)U34 methylt 99.5 1.1E-13 2.4E-18 116.9 13.8 104 62-180 120-226 (322)
38 PRK12335 tellurite resistance 99.5 7.1E-14 1.5E-18 116.5 12.2 100 64-180 120-223 (287)
39 PRK08287 cobalt-precorrin-6Y C 99.5 1.5E-13 3.3E-18 107.5 13.3 116 64-200 31-150 (187)
40 PF03848 TehB: Tellurite resis 99.5 9E-14 2E-18 108.3 11.4 102 62-180 28-133 (192)
41 PRK14966 unknown domain/N5-glu 99.5 3.6E-13 7.8E-18 115.9 15.6 136 40-202 236-401 (423)
42 PLN02233 ubiquinone biosynthes 99.5 4.3E-13 9.3E-18 110.3 15.1 109 63-183 72-185 (261)
43 COG2230 Cfa Cyclopropane fatty 99.5 2.1E-13 4.5E-18 111.6 12.7 105 61-182 69-178 (283)
44 PRK11783 rlmL 23S rRNA m(2)G24 99.5 7.2E-13 1.6E-17 122.5 17.9 138 64-216 538-690 (702)
45 PF02353 CMAS: Mycolic acid cy 99.5 2.2E-13 4.8E-18 112.4 12.4 116 43-182 48-168 (273)
46 TIGR03533 L3_gln_methyl protei 99.5 4.4E-13 9.4E-18 111.5 13.9 120 64-202 121-270 (284)
47 TIGR03534 RF_mod_PrmC protein- 99.5 9.4E-13 2E-17 107.3 15.2 140 38-204 69-239 (251)
48 smart00828 PKS_MT Methyltransf 99.5 6.1E-13 1.3E-17 106.8 13.8 125 66-205 1-143 (224)
49 PRK10258 biotin biosynthesis p 99.5 6.7E-13 1.5E-17 108.4 14.2 99 64-182 42-142 (251)
50 PRK10909 rsmD 16S rRNA m(2)G96 99.5 2.8E-13 6.1E-18 106.7 11.5 107 64-184 53-163 (199)
51 TIGR00536 hemK_fam HemK family 99.5 6.2E-13 1.3E-17 110.7 14.1 103 66-183 116-247 (284)
52 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.5E-12 3.3E-17 114.7 16.7 144 42-209 282-427 (443)
53 TIGR02752 MenG_heptapren 2-hep 99.5 7.1E-13 1.5E-17 106.9 12.9 103 64-181 45-152 (231)
54 PTZ00098 phosphoethanolamine N 99.5 5.9E-13 1.3E-17 109.6 12.6 104 62-182 50-158 (263)
55 PLN02336 phosphoethanolamine N 99.5 9.3E-13 2E-17 117.1 14.4 104 64-183 266-372 (475)
56 PF13489 Methyltransf_23: Meth 99.5 4.2E-13 9.1E-18 101.7 10.5 99 62-185 20-120 (161)
57 PRK15451 tRNA cmo(5)U34 methyl 99.5 7.9E-13 1.7E-17 107.9 12.3 105 64-184 56-168 (247)
58 TIGR02469 CbiT precorrin-6Y C5 99.5 3.2E-12 7E-17 92.7 14.1 101 64-180 19-122 (124)
59 PRK11873 arsM arsenite S-adeno 99.5 1.1E-12 2.3E-17 108.5 12.9 103 63-180 76-183 (272)
60 TIGR00095 RNA methyltransferas 99.5 8.5E-13 1.9E-17 103.4 11.4 110 62-182 47-161 (189)
61 PF08003 Methyltransf_9: Prote 99.5 1.1E-12 2.4E-17 107.6 12.3 106 61-180 112-219 (315)
62 PRK00121 trmB tRNA (guanine-N( 99.5 9.8E-13 2.1E-17 104.2 11.7 124 64-202 40-177 (202)
63 PRK11805 N5-glutamine S-adenos 99.5 1.5E-12 3.2E-17 109.4 13.3 101 66-181 135-264 (307)
64 PRK09328 N5-glutamine S-adenos 99.5 4.3E-12 9.2E-17 104.9 15.9 135 40-200 91-256 (275)
65 PRK00377 cbiT cobalt-precorrin 99.4 5E-12 1.1E-16 99.8 15.2 125 61-202 37-166 (198)
66 PRK01683 trans-aconitate 2-met 99.4 2.5E-12 5.5E-17 105.4 13.8 97 63-180 30-130 (258)
67 TIGR00080 pimt protein-L-isoas 99.4 2.2E-12 4.8E-17 103.1 13.1 114 41-181 61-178 (215)
68 PRK05134 bifunctional 3-demeth 99.4 1.9E-12 4.1E-17 104.6 12.6 118 44-183 35-154 (233)
69 PRK14103 trans-aconitate 2-met 99.4 1.4E-12 2.9E-17 106.9 11.8 95 63-180 28-126 (255)
70 PRK01544 bifunctional N5-gluta 99.4 2.6E-12 5.7E-17 114.6 14.4 104 64-182 138-271 (506)
71 TIGR00740 methyltransferase, p 99.4 1.6E-12 3.5E-17 105.5 11.2 105 64-184 53-165 (239)
72 TIGR03840 TMPT_Se_Te thiopurin 99.4 8.8E-12 1.9E-16 99.4 15.1 158 41-211 19-192 (213)
73 PLN02490 MPBQ/MSBQ methyltrans 99.4 4E-12 8.6E-17 107.6 13.6 124 64-205 113-255 (340)
74 PRK00216 ubiE ubiquinone/menaq 99.4 8.7E-12 1.9E-16 100.6 15.2 104 64-181 51-159 (239)
75 PF05401 NodS: Nodulation prot 99.4 5.8E-13 1.3E-17 103.0 7.6 120 66-204 45-178 (201)
76 PF08242 Methyltransf_12: Meth 99.4 7.1E-14 1.5E-18 98.0 2.3 94 69-176 1-99 (99)
77 PRK13944 protein-L-isoaspartat 99.4 6.8E-12 1.5E-16 99.6 13.8 113 42-181 57-174 (205)
78 TIGR02085 meth_trns_rumB 23S r 99.4 9.7E-12 2.1E-16 107.3 15.7 125 64-208 233-358 (374)
79 PRK04266 fibrillarin; Provisio 99.4 1.5E-11 3.3E-16 98.8 15.6 130 62-206 70-210 (226)
80 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.1E-12 6.8E-17 100.7 11.4 120 64-197 16-147 (194)
81 TIGR01177 conserved hypothetic 99.4 5E-12 1.1E-16 107.3 13.5 107 63-184 181-298 (329)
82 COG1092 Predicted SAM-dependen 99.4 9.7E-12 2.1E-16 106.7 14.8 142 63-215 216-375 (393)
83 KOG1499 Protein arginine N-met 99.4 1E-12 2.3E-17 109.3 8.4 104 60-177 56-164 (346)
84 PLN02672 methionine S-methyltr 99.4 9.3E-12 2E-16 118.0 15.4 156 41-206 101-303 (1082)
85 PRK13942 protein-L-isoaspartat 99.4 7.8E-12 1.7E-16 99.8 12.8 113 41-180 60-176 (212)
86 PF13649 Methyltransf_25: Meth 99.4 8.9E-13 1.9E-17 92.8 6.3 91 68-174 1-101 (101)
87 PRK11705 cyclopropane fatty ac 99.4 2.2E-11 4.8E-16 105.2 15.6 98 62-180 165-267 (383)
88 PRK08317 hypothetical protein; 99.4 1.6E-11 3.6E-16 98.8 13.9 104 62-181 17-125 (241)
89 PRK03522 rumB 23S rRNA methylu 99.4 2.8E-11 6.2E-16 102.1 15.2 124 64-207 173-297 (315)
90 TIGR01983 UbiG ubiquinone bios 99.4 1.2E-11 2.7E-16 99.1 11.9 128 39-183 23-152 (224)
91 TIGR00479 rumA 23S rRNA (uraci 99.3 3.8E-11 8.3E-16 105.5 15.9 128 64-208 292-422 (431)
92 TIGR02021 BchM-ChlM magnesium 99.3 7.1E-12 1.5E-16 100.4 10.4 100 62-178 53-156 (219)
93 TIGR02716 C20_methyl_CrtF C-20 99.3 1.9E-11 4.1E-16 102.8 13.3 104 63-182 148-256 (306)
94 PRK00312 pcm protein-L-isoaspa 99.3 3.3E-11 7.1E-16 96.1 13.8 114 41-181 62-176 (212)
95 PRK13255 thiopurine S-methyltr 99.3 5.3E-11 1.1E-15 95.3 14.8 154 42-208 23-192 (218)
96 TIGR02072 BioC biotin biosynth 99.3 1.6E-11 3.4E-16 99.0 11.9 100 63-181 33-136 (240)
97 COG2242 CobL Precorrin-6B meth 99.3 1.1E-10 2.4E-15 89.7 15.7 123 61-204 31-159 (187)
98 KOG1271 Methyltransferases [Ge 99.3 3.2E-11 6.9E-16 91.7 12.3 145 37-201 40-200 (227)
99 PF10672 Methyltrans_SAM: S-ad 99.3 1.3E-11 2.9E-16 101.9 10.9 141 64-215 123-273 (286)
100 PRK05785 hypothetical protein; 99.3 1.6E-11 3.4E-16 98.9 10.7 87 64-173 51-140 (226)
101 KOG1540 Ubiquinone biosynthesi 99.3 7E-11 1.5E-15 94.4 14.1 119 62-192 98-227 (296)
102 PLN02585 magnesium protoporphy 99.3 4E-11 8.8E-16 100.8 13.3 103 63-180 143-249 (315)
103 PRK07402 precorrin-6B methylas 99.3 1.4E-10 3E-15 91.3 15.5 127 64-207 40-171 (196)
104 KOG2904 Predicted methyltransf 99.3 1.2E-10 2.7E-15 93.8 14.1 137 42-195 130-302 (328)
105 PF03602 Cons_hypoth95: Conser 99.3 4.7E-12 1E-16 98.6 5.7 110 63-183 41-156 (183)
106 PRK07580 Mg-protoporphyrin IX 99.3 5.5E-11 1.2E-15 95.7 11.9 95 63-174 62-160 (230)
107 PRK05031 tRNA (uracil-5-)-meth 99.3 2.8E-10 6.1E-15 97.8 16.5 141 41-208 191-345 (362)
108 PRK11188 rrmJ 23S rRNA methylt 99.3 1E-10 2.2E-15 93.1 12.7 118 63-204 50-187 (209)
109 PRK10901 16S rRNA methyltransf 99.3 2.9E-10 6.2E-15 99.8 16.1 105 63-181 243-373 (427)
110 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.6E-10 5.6E-15 91.0 13.9 101 64-181 39-144 (223)
111 PRK14901 16S rRNA methyltransf 99.2 4.7E-10 1E-14 98.7 16.6 109 63-183 251-387 (434)
112 COG2518 Pcm Protein-L-isoaspar 99.2 1.1E-10 2.4E-15 91.5 11.2 120 35-181 50-170 (209)
113 PRK14902 16S rRNA methyltransf 99.2 2.9E-10 6.4E-15 100.3 15.2 106 64-183 250-382 (444)
114 PRK06922 hypothetical protein; 99.2 5.9E-11 1.3E-15 106.9 10.6 105 63-181 417-538 (677)
115 TIGR02143 trmA_only tRNA (urac 99.2 5E-10 1.1E-14 95.9 15.8 159 20-207 163-335 (353)
116 KOG3420 Predicted RNA methylas 99.2 2.3E-11 4.9E-16 89.1 6.0 79 61-155 45-125 (185)
117 PLN03075 nicotianamine synthas 99.2 2E-10 4.3E-15 95.2 12.2 103 64-180 123-233 (296)
118 PLN02336 phosphoethanolamine N 99.2 1.1E-10 2.4E-15 103.8 11.5 101 64-179 37-141 (475)
119 cd02440 AdoMet_MTases S-adenos 99.2 1.3E-10 2.8E-15 80.4 9.5 99 67-179 1-103 (107)
120 PLN02781 Probable caffeoyl-CoA 99.2 1.2E-10 2.6E-15 94.3 10.5 103 64-179 68-177 (234)
121 KOG1500 Protein arginine N-met 99.2 6.7E-11 1.5E-15 97.8 9.0 104 60-179 173-281 (517)
122 TIGR03587 Pse_Me-ase pseudamin 99.2 3E-10 6.5E-15 90.1 12.4 94 64-180 43-142 (204)
123 PTZ00146 fibrillarin; Provisio 99.2 1.6E-09 3.5E-14 89.4 16.6 151 35-204 106-269 (293)
124 PRK14903 16S rRNA methyltransf 99.2 4.3E-10 9.3E-15 98.7 13.9 109 63-185 236-371 (431)
125 smart00138 MeTrc Methyltransfe 99.2 7E-11 1.5E-15 97.3 8.4 117 64-183 99-245 (264)
126 TIGR00446 nop2p NOL1/NOP2/sun 99.2 7.7E-10 1.7E-14 91.2 14.6 107 64-185 71-204 (264)
127 PHA03412 putative methyltransf 99.2 1.5E-10 3.3E-15 92.6 10.0 91 64-175 49-158 (241)
128 PHA03411 putative methyltransf 99.2 3.8E-10 8.3E-15 92.3 12.4 98 65-183 65-186 (279)
129 PRK04457 spermidine synthase; 99.2 1.8E-10 3.9E-15 94.7 10.4 122 64-200 66-196 (262)
130 smart00650 rADc Ribosomal RNA 99.2 6.6E-10 1.4E-14 85.5 12.5 97 63-178 12-111 (169)
131 PRK06202 hypothetical protein; 99.2 2.8E-10 6.2E-15 91.9 10.6 101 64-184 60-170 (232)
132 COG0742 N6-adenine-specific me 99.2 2.6E-10 5.7E-15 88.0 9.9 109 62-183 41-157 (187)
133 COG4976 Predicted methyltransf 99.2 2.9E-11 6.4E-16 95.1 4.6 130 65-212 126-271 (287)
134 KOG3191 Predicted N6-DNA-methy 99.2 5.7E-10 1.2E-14 84.9 11.3 146 42-210 25-197 (209)
135 PRK13256 thiopurine S-methyltr 99.2 1.4E-09 3.1E-14 87.0 14.0 156 41-207 28-198 (226)
136 PRK13943 protein-L-isoaspartat 99.2 6.9E-10 1.5E-14 93.6 12.8 99 62-180 78-180 (322)
137 PRK14121 tRNA (guanine-N(7)-)- 99.2 3.9E-10 8.5E-15 96.6 11.4 106 64-182 122-237 (390)
138 TIGR00438 rrmJ cell division p 99.1 2E-09 4.4E-14 84.2 13.7 120 61-204 29-168 (188)
139 KOG4300 Predicted methyltransf 99.1 3.7E-10 8.1E-15 87.6 9.1 104 67-185 79-187 (252)
140 TIGR03438 probable methyltrans 99.1 4.8E-10 1E-14 94.1 10.6 110 64-184 63-181 (301)
141 PRK14904 16S rRNA methyltransf 99.1 2.4E-09 5.1E-14 94.6 15.4 122 37-184 233-381 (445)
142 TIGR00563 rsmB ribosomal RNA s 99.1 2.1E-09 4.4E-14 94.4 14.7 131 40-193 225-385 (426)
143 PRK11088 rrmA 23S rRNA methylt 99.1 9.5E-10 2.1E-14 91.0 11.8 93 64-182 85-183 (272)
144 PRK11727 23S rRNA mA1618 methy 99.1 3E-10 6.5E-15 95.5 8.4 82 64-156 114-201 (321)
145 COG2265 TrmA SAM-dependent met 99.1 9E-10 1.9E-14 96.2 10.9 139 42-205 278-419 (432)
146 PLN02476 O-methyltransferase 99.1 2.4E-09 5.1E-14 88.2 12.8 129 64-205 118-267 (278)
147 PF01135 PCMT: Protein-L-isoas 99.1 6.2E-10 1.3E-14 88.4 8.7 114 41-181 56-173 (209)
148 COG4106 Tam Trans-aconitate me 99.1 1E-09 2.2E-14 85.8 8.9 98 64-182 30-131 (257)
149 KOG2920 Predicted methyltransf 99.0 1.2E-10 2.7E-15 94.6 3.4 149 29-187 85-241 (282)
150 PF01596 Methyltransf_3: O-met 99.0 6E-10 1.3E-14 88.2 7.1 129 64-205 45-194 (205)
151 COG4122 Predicted O-methyltran 99.0 2.6E-09 5.7E-14 84.8 10.3 128 64-205 59-207 (219)
152 PRK04338 N(2),N(2)-dimethylgua 99.0 2.6E-09 5.6E-14 92.2 9.7 98 65-180 58-158 (382)
153 KOG1541 Predicted protein carb 99.0 5.8E-09 1.3E-13 81.8 10.7 117 64-199 50-180 (270)
154 PRK00811 spermidine synthase; 99.0 1.1E-08 2.3E-13 85.2 11.7 128 64-200 76-213 (283)
155 PF05958 tRNA_U5-meth_tr: tRNA 98.9 2.6E-08 5.7E-13 85.3 14.4 161 18-208 160-335 (352)
156 COG2519 GCD14 tRNA(1-methylade 98.9 3.3E-08 7.2E-13 79.4 13.5 116 61-197 91-210 (256)
157 PRK14896 ksgA 16S ribosomal RN 98.9 1.8E-08 3.8E-13 82.8 12.0 77 62-157 27-104 (258)
158 PTZ00338 dimethyladenosine tra 98.9 1.5E-08 3.3E-13 84.5 11.6 80 62-157 34-114 (294)
159 KOG2361 Predicted methyltransf 98.9 5.3E-09 1.1E-13 83.1 8.2 107 67-186 74-189 (264)
160 PRK04148 hypothetical protein; 98.9 1.4E-08 3E-13 74.5 9.7 82 44-153 3-86 (134)
161 PRK00274 ksgA 16S ribosomal RN 98.9 1.8E-08 3.9E-13 83.4 11.6 78 62-157 40-118 (272)
162 PF05724 TPMT: Thiopurine S-me 98.9 7.6E-09 1.6E-13 82.8 8.7 155 41-207 22-191 (218)
163 TIGR00478 tly hemolysin TlyA f 98.9 5.5E-09 1.2E-13 84.0 7.8 113 37-179 55-170 (228)
164 PF02475 Met_10: Met-10+ like- 98.9 5.5E-09 1.2E-13 82.3 7.6 96 63-177 100-199 (200)
165 PF07021 MetW: Methionine bios 98.9 6.3E-09 1.4E-13 80.5 7.6 96 64-182 13-111 (193)
166 PF00891 Methyltransf_2: O-met 98.9 2.3E-08 5E-13 81.2 10.6 97 64-184 100-203 (241)
167 TIGR00417 speE spermidine synt 98.9 3.4E-08 7.3E-13 81.7 11.7 107 64-180 72-186 (270)
168 COG1041 Predicted DNA modifica 98.9 5.5E-08 1.2E-12 81.7 12.7 136 42-204 182-328 (347)
169 PRK03612 spermidine synthase; 98.9 2.6E-08 5.6E-13 89.6 11.4 132 64-202 297-440 (521)
170 PF05185 PRMT5: PRMT5 arginine 98.9 1.2E-08 2.6E-13 89.7 9.0 99 64-177 186-294 (448)
171 TIGR00308 TRM1 tRNA(guanine-26 98.8 1.4E-08 2.9E-13 87.4 9.0 99 65-180 45-147 (374)
172 PLN02589 caffeoyl-CoA O-methyl 98.8 1.9E-08 4.2E-13 81.8 9.4 103 64-179 79-189 (247)
173 KOG3010 Methyltransferase [Gen 98.8 7.6E-09 1.7E-13 82.2 5.7 98 67-178 36-135 (261)
174 TIGR02081 metW methionine bios 98.8 3.3E-08 7.1E-13 77.7 9.3 88 64-171 13-103 (194)
175 KOG2899 Predicted methyltransf 98.8 5.3E-08 1.2E-12 77.5 9.4 120 61-180 55-209 (288)
176 PF08704 GCD14: tRNA methyltra 98.8 1.9E-07 4.2E-12 75.8 12.3 122 61-199 37-164 (247)
177 PF01170 UPF0020: Putative RNA 98.7 1E-07 2.2E-12 74.1 9.4 104 63-181 27-151 (179)
178 PF02527 GidB: rRNA small subu 98.7 1.2E-07 2.5E-12 73.9 9.2 119 67-205 51-174 (184)
179 PF05219 DREV: DREV methyltran 98.7 2.1E-07 4.5E-12 75.2 10.0 94 63-180 93-188 (265)
180 PRK01581 speE spermidine synth 98.7 2.7E-07 5.9E-12 78.5 11.2 106 64-179 150-267 (374)
181 PLN02366 spermidine synthase 98.7 3E-07 6.6E-12 77.2 11.4 127 64-199 91-227 (308)
182 TIGR00755 ksgA dimethyladenosi 98.7 2.4E-07 5.3E-12 75.8 10.4 76 62-156 27-106 (253)
183 PF09445 Methyltransf_15: RNA 98.7 4.5E-08 9.7E-13 74.4 5.5 76 67-153 2-78 (163)
184 PF02390 Methyltransf_4: Putat 98.6 2E-07 4.2E-12 73.4 8.6 123 66-202 19-156 (195)
185 COG0357 GidB Predicted S-adeno 98.6 3.5E-07 7.6E-12 72.6 9.8 126 65-209 68-198 (215)
186 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.9E-06 6.3E-11 79.0 15.8 151 13-181 138-348 (702)
187 COG2520 Predicted methyltransf 98.6 7.7E-07 1.7E-11 75.2 10.7 104 64-185 188-294 (341)
188 KOG2187 tRNA uracil-5-methyltr 98.5 8.2E-07 1.8E-11 77.7 10.8 125 41-184 367-494 (534)
189 PF06080 DUF938: Protein of un 98.5 1.2E-06 2.6E-11 68.8 10.1 105 67-182 28-143 (204)
190 PF01861 DUF43: Protein of unk 98.5 7.5E-06 1.6E-10 65.7 14.6 150 32-204 20-176 (243)
191 COG3963 Phospholipid N-methylt 98.5 1.1E-06 2.4E-11 66.3 9.1 119 37-179 28-155 (194)
192 COG0116 Predicted N6-adenine-s 98.5 9.7E-06 2.1E-10 69.2 15.6 146 14-180 141-344 (381)
193 PF03291 Pox_MCEL: mRNA cappin 98.5 9.7E-07 2.1E-11 74.9 9.0 136 38-182 43-188 (331)
194 PF05148 Methyltransf_8: Hypot 98.5 4.1E-06 8.8E-11 65.8 11.7 127 37-204 53-183 (219)
195 COG0220 Predicted S-adenosylme 98.4 1.8E-06 3.8E-11 69.4 9.5 106 66-183 50-167 (227)
196 KOG1661 Protein-L-isoaspartate 98.4 2.1E-06 4.5E-11 67.1 9.3 110 61-180 79-193 (237)
197 PLN02232 ubiquinone biosynthes 98.4 2.3E-06 5.1E-11 65.2 9.4 83 90-184 1-85 (160)
198 PRK11933 yebU rRNA (cytosine-C 98.4 7.7E-06 1.7E-10 72.5 13.9 125 38-185 96-247 (470)
199 PF05971 Methyltransf_10: Prot 98.4 2.3E-06 5E-11 71.1 9.9 81 65-156 103-190 (299)
200 TIGR02987 met_A_Alw26 type II 98.4 5E-06 1.1E-10 75.1 11.8 130 64-205 31-223 (524)
201 PF02384 N6_Mtase: N-6 DNA Met 98.3 6.2E-06 1.3E-10 69.4 11.0 129 63-202 45-208 (311)
202 PLN02823 spermine synthase 98.3 7.5E-06 1.6E-10 69.6 10.8 127 64-200 103-244 (336)
203 KOG1975 mRNA cap methyltransfe 98.3 4.9E-06 1.1E-10 69.0 9.0 114 64-183 117-240 (389)
204 COG0030 KsgA Dimethyladenosine 98.2 2.9E-05 6.2E-10 63.4 12.0 79 62-158 28-109 (259)
205 KOG0820 Ribosomal RNA adenine 98.2 2.2E-05 4.9E-10 63.7 11.0 102 33-158 35-137 (315)
206 PF08123 DOT1: Histone methyla 98.2 2.2E-06 4.7E-11 67.9 5.1 152 62-218 40-198 (205)
207 COG4076 Predicted RNA methylas 98.2 2.2E-06 4.9E-11 65.9 4.7 96 65-177 33-132 (252)
208 PF05891 Methyltransf_PK: AdoM 98.2 6.4E-06 1.4E-10 65.1 7.3 133 64-211 55-207 (218)
209 COG2521 Predicted archaeal met 98.2 3.4E-06 7.3E-11 67.0 5.4 129 63-202 133-273 (287)
210 KOG3045 Predicted RNA methylas 98.2 2.8E-05 6.1E-10 62.8 10.4 125 38-204 162-289 (325)
211 PF03141 Methyltransf_29: Puta 98.1 8.1E-06 1.7E-10 71.6 7.4 124 35-184 91-223 (506)
212 KOG1663 O-methyltransferase [S 98.1 3.5E-05 7.6E-10 61.2 10.1 106 62-180 71-183 (237)
213 COG1352 CheR Methylase of chem 98.1 7.9E-06 1.7E-10 67.2 6.6 119 64-185 96-246 (268)
214 KOG1501 Arginine N-methyltrans 98.1 8.8E-06 1.9E-10 70.1 6.6 94 67-174 69-169 (636)
215 PF12147 Methyltransf_20: Puta 98.1 5.9E-05 1.3E-09 62.1 10.7 112 64-186 135-255 (311)
216 KOG2940 Predicted methyltransf 98.0 1.4E-05 3.1E-10 63.4 6.6 99 64-179 72-173 (325)
217 PRK00536 speE spermidine synth 98.0 0.00013 2.7E-09 60.0 12.3 119 64-200 72-193 (262)
218 PRK11760 putative 23S rRNA C24 98.0 0.00025 5.3E-09 60.0 13.9 117 40-180 187-305 (357)
219 TIGR01444 fkbM_fam methyltrans 98.0 2.4E-05 5.2E-10 58.1 7.2 57 67-135 1-60 (143)
220 PRK10611 chemotaxis methyltran 98.0 1.9E-05 4.2E-10 65.6 6.8 117 65-183 116-265 (287)
221 PRK01544 bifunctional N5-gluta 98.0 4.9E-05 1.1E-09 68.3 9.6 106 64-182 347-464 (506)
222 PF01739 CheR: CheR methyltran 97.9 6.2E-06 1.3E-10 64.9 2.6 116 64-182 31-177 (196)
223 PF00398 RrnaAD: Ribosomal RNA 97.9 0.00012 2.7E-09 60.2 10.4 108 42-172 15-123 (262)
224 PF04816 DUF633: Family of unk 97.9 0.00025 5.5E-09 56.2 10.9 115 68-201 1-119 (205)
225 COG0144 Sun tRNA and rRNA cyto 97.8 0.00088 1.9E-08 57.6 14.8 113 62-186 154-294 (355)
226 KOG2497 Predicted methyltransf 97.8 1.4E-05 3E-10 65.3 3.5 123 32-170 65-190 (262)
227 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 1.3E-05 2.9E-10 65.4 3.0 146 60-205 52-238 (256)
228 COG1189 Predicted rRNA methyla 97.8 0.00033 7.1E-09 56.1 10.1 115 38-180 60-178 (245)
229 PF01564 Spermine_synth: Sperm 97.7 0.00035 7.6E-09 57.0 10.2 127 64-200 76-213 (246)
230 COG0500 SmtA SAM-dependent met 97.7 0.00097 2.1E-08 48.5 11.9 103 68-185 52-160 (257)
231 PF01728 FtsJ: FtsJ-like methy 97.7 2.4E-05 5.1E-10 60.7 2.5 52 40-96 4-58 (181)
232 PHA01634 hypothetical protein 97.7 0.00021 4.5E-09 51.7 6.7 50 61-110 25-76 (156)
233 PF13679 Methyltransf_32: Meth 97.6 0.00023 5E-09 53.0 7.2 47 63-109 24-77 (141)
234 PRK10742 putative methyltransf 97.6 0.0003 6.5E-09 57.0 8.3 86 67-157 91-177 (250)
235 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00014 3E-09 60.8 6.3 45 63-107 18-66 (296)
236 COG0293 FtsJ 23S rRNA methylas 97.6 0.0048 1E-07 48.7 14.2 117 64-204 45-181 (205)
237 PF03059 NAS: Nicotianamine sy 97.6 0.00099 2.1E-08 55.0 10.8 101 65-179 121-229 (276)
238 PF09243 Rsm22: Mitochondrial 97.5 0.0012 2.6E-08 54.8 10.5 103 62-181 31-140 (274)
239 PF01269 Fibrillarin: Fibrilla 97.5 0.0036 7.8E-08 49.8 12.5 157 33-208 45-215 (229)
240 PF11968 DUF3321: Putative met 97.5 0.0018 4E-08 51.2 10.5 132 41-204 31-179 (219)
241 PF07942 N2227: N2227-like pro 97.5 0.0015 3.3E-08 53.8 10.4 138 62-203 54-239 (270)
242 TIGR03439 methyl_EasF probable 97.4 0.00085 1.8E-08 56.7 8.7 108 64-183 76-200 (319)
243 KOG2730 Methylase [General fun 97.4 9.1E-05 2E-09 58.5 2.6 79 64-153 94-174 (263)
244 KOG3987 Uncharacterized conser 97.4 3.9E-05 8.5E-10 60.0 0.4 93 64-180 112-207 (288)
245 COG0421 SpeE Spermidine syntha 97.3 0.0016 3.5E-08 54.1 9.0 104 66-179 78-189 (282)
246 KOG1709 Guanidinoacetate methy 97.3 0.00087 1.9E-08 52.9 6.9 104 63-180 100-206 (271)
247 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0014 3.1E-08 56.7 6.5 103 64-181 49-155 (377)
248 COG2384 Predicted SAM-dependen 97.0 0.024 5.3E-07 45.0 12.4 114 64-193 16-132 (226)
249 COG1889 NOP1 Fibrillarin-like 97.0 0.042 9.2E-07 43.2 12.8 149 36-203 51-211 (231)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.9 0.0071 1.5E-07 50.4 9.1 146 37-206 68-248 (283)
251 KOG2915 tRNA(1-methyladenosine 96.9 0.059 1.3E-06 44.3 13.8 104 61-180 102-209 (314)
252 COG1568 Predicted methyltransf 96.9 0.0096 2.1E-07 48.9 9.0 122 60-195 148-275 (354)
253 KOG1269 SAM-dependent methyltr 96.7 0.0069 1.5E-07 52.1 7.8 102 62-178 108-213 (364)
254 PF13578 Methyltransf_24: Meth 96.7 0.00024 5.2E-09 50.0 -1.2 96 69-178 1-103 (106)
255 PF03141 Methyltransf_29: Puta 96.6 0.0082 1.8E-07 53.1 7.6 118 66-207 367-492 (506)
256 cd00315 Cyt_C5_DNA_methylase C 96.5 0.0094 2E-07 49.4 6.9 40 67-106 2-43 (275)
257 PRK15001 SAM-dependent 23S rib 96.4 0.16 3.6E-06 44.0 14.0 137 20-184 8-146 (378)
258 KOG0024 Sorbitol dehydrogenase 96.4 0.0082 1.8E-07 50.3 5.6 96 63-180 168-273 (354)
259 COG3129 Predicted SAM-dependen 96.3 0.0094 2E-07 47.7 5.5 80 64-156 78-165 (292)
260 KOG2671 Putative RNA methylase 96.3 0.0076 1.6E-07 50.9 5.2 81 63-155 207-295 (421)
261 COG1867 TRM1 N2,N2-dimethylgua 96.3 0.021 4.5E-07 48.8 7.6 101 65-182 53-156 (380)
262 COG4262 Predicted spermidine s 96.2 0.06 1.3E-06 46.1 10.0 109 65-180 290-407 (508)
263 COG5459 Predicted rRNA methyla 96.2 0.0084 1.8E-07 50.8 4.7 105 61-182 110-227 (484)
264 PF06962 rRNA_methylase: Putat 96.0 0.081 1.8E-06 39.2 8.7 104 88-205 1-124 (140)
265 PF07757 AdoMet_MTase: Predict 95.9 0.013 2.9E-07 41.2 4.1 30 65-94 59-88 (112)
266 KOG2078 tRNA modification enzy 95.9 0.015 3.3E-07 50.4 5.4 70 33-110 226-296 (495)
267 PRK09424 pntA NAD(P) transhydr 95.9 0.1 2.2E-06 47.1 10.8 42 62-103 162-206 (509)
268 KOG3178 Hydroxyindole-O-methyl 95.8 0.05 1.1E-06 46.1 7.9 93 66-181 179-276 (342)
269 KOG2798 Putative trehalase [Ca 95.8 0.078 1.7E-06 44.4 8.8 114 64-177 150-293 (369)
270 KOG1227 Putative methyltransfe 95.4 0.012 2.6E-07 48.9 2.8 81 64-159 194-278 (351)
271 KOG3115 Methyltransferase-like 95.4 0.15 3.1E-06 40.3 8.4 110 66-182 62-185 (249)
272 PF01555 N6_N4_Mtase: DNA meth 95.3 0.046 1E-06 43.2 5.8 54 42-103 177-231 (231)
273 PF10237 N6-adenineMlase: Prob 95.3 0.12 2.5E-06 39.4 7.6 114 41-184 11-127 (162)
274 KOG4589 Cell division protein 95.0 0.2 4.3E-06 39.0 8.2 114 63-200 68-202 (232)
275 PRK11524 putative methyltransf 95.0 0.085 1.8E-06 43.9 6.7 46 62-107 206-252 (284)
276 PF04672 Methyltransf_19: S-ad 94.8 0.096 2.1E-06 43.1 6.3 106 67-184 71-194 (267)
277 PF04445 SAM_MT: Putative SAM- 94.8 0.17 3.6E-06 40.9 7.5 86 66-156 77-163 (234)
278 KOG1596 Fibrillarin and relate 94.7 0.64 1.4E-05 37.7 10.5 147 17-183 113-264 (317)
279 COG1064 AdhP Zn-dependent alco 94.7 0.16 3.4E-06 43.4 7.5 93 62-180 164-259 (339)
280 PF00145 DNA_methylase: C-5 cy 94.7 0.04 8.7E-07 46.2 4.1 40 67-106 2-43 (335)
281 PF04989 CmcI: Cephalosporin h 94.6 0.35 7.6E-06 38.3 8.8 104 64-180 32-147 (206)
282 PF07091 FmrO: Ribosomal RNA m 94.5 0.16 3.4E-06 41.4 6.7 102 65-185 106-213 (251)
283 PRK13699 putative methylase; P 94.4 0.16 3.4E-06 40.9 6.8 46 63-108 162-208 (227)
284 KOG1122 tRNA and rRNA cytosine 94.2 1.8 4E-05 37.9 12.8 111 62-185 239-376 (460)
285 PLN02668 indole-3-acetate carb 94.1 0.72 1.6E-05 40.1 10.5 19 65-83 64-82 (386)
286 KOG1253 tRNA methyltransferase 94.1 0.045 9.8E-07 48.4 3.1 104 64-181 109-217 (525)
287 KOG4058 Uncharacterized conser 93.9 0.52 1.1E-05 35.3 7.9 45 66-110 74-120 (199)
288 KOG3350 Uncharacterized conser 93.9 0.12 2.7E-06 39.7 4.7 89 126-216 116-206 (217)
289 TIGR00006 S-adenosyl-methyltra 93.8 0.27 5.8E-06 41.4 7.0 58 43-107 6-66 (305)
290 COG0270 Dcm Site-specific DNA 93.6 0.24 5.2E-06 42.1 6.7 42 65-106 3-46 (328)
291 KOG1331 Predicted methyltransf 93.6 0.067 1.5E-06 44.2 3.0 111 33-179 27-142 (293)
292 PF03492 Methyltransf_7: SAM d 93.4 1 2.2E-05 38.5 10.1 32 64-95 16-65 (334)
293 COG2961 ComJ Protein involved 93.0 1.9 4.1E-05 35.2 10.3 139 37-197 66-212 (279)
294 PF03686 UPF0146: Uncharacteri 93.0 0.27 5.9E-06 35.7 5.1 43 44-96 3-46 (127)
295 KOG2198 tRNA cytosine-5-methyl 93.0 3.3 7.2E-05 35.6 12.3 130 63-204 154-324 (375)
296 KOG2912 Predicted DNA methylas 92.8 0.11 2.3E-06 43.8 3.1 76 68-156 106-191 (419)
297 PRK09880 L-idonate 5-dehydroge 92.7 1.2 2.6E-05 37.8 9.6 95 63-180 168-266 (343)
298 KOG2352 Predicted spermine/spe 92.6 0.94 2E-05 40.3 8.7 96 66-178 50-159 (482)
299 PRK11524 putative methyltransf 92.4 0.25 5.3E-06 41.2 4.9 41 142-182 25-82 (284)
300 TIGR00561 pntA NAD(P) transhyd 92.3 0.95 2.1E-05 40.9 8.6 40 63-102 162-204 (511)
301 COG0286 HsdM Type I restrictio 91.7 2.5 5.4E-05 38.1 10.7 106 64-180 186-326 (489)
302 PF07279 DUF1442: Protein of u 91.6 3.6 7.7E-05 32.8 10.2 103 64-184 41-152 (218)
303 COG1748 LYS9 Saccharopine dehy 91.6 0.45 9.7E-06 41.4 5.6 72 66-153 2-77 (389)
304 PRK13699 putative methylase; P 91.2 0.8 1.7E-05 36.9 6.5 59 141-202 17-92 (227)
305 cd08230 glucose_DH Glucose deh 91.1 1.3 2.7E-05 37.8 8.0 92 63-180 171-269 (355)
306 KOG3924 Putative protein methy 91.0 1.4 3.1E-05 38.2 7.9 114 63-182 191-310 (419)
307 TIGR01202 bchC 2-desacetyl-2-h 90.9 1.5 3.4E-05 36.6 8.2 84 64-180 144-231 (308)
308 KOG1201 Hydroxysteroid 17-beta 90.4 1.1 2.4E-05 37.5 6.6 79 61-153 34-123 (300)
309 COG1255 Uncharacterized protei 90.4 0.61 1.3E-05 33.3 4.4 84 66-178 15-100 (129)
310 PF03721 UDPG_MGDP_dh_N: UDP-g 90.1 4.3 9.3E-05 31.5 9.5 97 67-181 2-121 (185)
311 PRK05786 fabG 3-ketoacyl-(acyl 90.1 5.2 0.00011 31.6 10.3 75 64-153 4-90 (238)
312 cd08283 FDH_like_1 Glutathione 89.9 0.79 1.7E-05 39.7 5.8 42 62-103 182-227 (386)
313 TIGR02822 adh_fam_2 zinc-bindi 89.4 3.2 6.9E-05 35.1 9.0 89 62-180 163-254 (329)
314 PF10354 DUF2431: Domain of un 89.2 7.9 0.00017 29.5 10.1 64 141-204 72-150 (166)
315 PF02086 MethyltransfD12: D12 89.0 0.68 1.5E-05 37.6 4.5 50 44-100 7-57 (260)
316 PF06460 NSP13: Coronavirus NS 88.9 3.4 7.3E-05 34.0 8.1 108 44-185 47-174 (299)
317 KOG2651 rRNA adenine N-6-methy 88.8 0.91 2E-05 39.3 5.0 31 66-96 155-186 (476)
318 PRK05708 2-dehydropantoate 2-r 88.6 2.4 5.3E-05 35.6 7.6 98 66-180 3-104 (305)
319 TIGR00518 alaDH alanine dehydr 88.5 1.4 3E-05 38.2 6.3 37 63-99 165-204 (370)
320 COG1063 Tdh Threonine dehydrog 88.5 1 2.2E-05 38.6 5.4 97 64-181 168-270 (350)
321 cd08254 hydroxyacyl_CoA_DH 6-h 88.3 3.4 7.3E-05 34.5 8.4 95 63-179 164-262 (338)
322 COG1893 ApbA Ketopantoate redu 88.0 6.3 0.00014 33.2 9.8 99 66-181 1-102 (307)
323 TIGR00027 mthyl_TIGR00027 meth 87.8 5.1 0.00011 32.9 8.8 107 66-182 83-199 (260)
324 TIGR03366 HpnZ_proposed putati 87.8 3 6.5E-05 34.3 7.6 39 63-101 119-161 (280)
325 PF11599 AviRa: RRNA methyltra 87.6 1.4 2.9E-05 35.3 5.0 120 64-183 51-217 (246)
326 TIGR00675 dcm DNA-methyltransf 87.6 0.95 2.1E-05 38.3 4.6 38 68-105 1-40 (315)
327 PRK08293 3-hydroxybutyryl-CoA 87.6 6.7 0.00014 32.5 9.6 103 67-176 5-116 (287)
328 PRK06249 2-dehydropantoate 2-r 87.4 3.2 7E-05 34.9 7.7 99 65-180 5-106 (313)
329 PRK06124 gluconate 5-dehydroge 86.8 14 0.00031 29.4 11.4 79 61-153 7-97 (256)
330 PF06859 Bin3: Bicoid-interact 86.7 0.18 3.9E-06 35.7 -0.2 38 144-181 1-45 (110)
331 PRK12548 shikimate 5-dehydroge 86.6 3.1 6.8E-05 34.7 7.1 81 62-153 123-208 (289)
332 COG0686 Ald Alanine dehydrogen 86.5 3.7 8E-05 34.8 7.2 96 63-177 166-265 (371)
333 TIGR03451 mycoS_dep_FDH mycoth 86.4 2.4 5.1E-05 36.2 6.4 39 63-101 175-217 (358)
334 PRK09489 rsmC 16S ribosomal RN 86.3 11 0.00024 32.3 10.4 111 41-185 7-117 (342)
335 PF01555 N6_N4_Mtase: DNA meth 86.3 2 4.3E-05 33.7 5.6 42 159-201 35-78 (231)
336 KOG0725 Reductases with broad 86.0 15 0.00033 30.3 10.8 83 61-153 4-98 (270)
337 PRK06139 short chain dehydroge 86.0 2.8 6.2E-05 35.6 6.7 78 63-153 5-93 (330)
338 PRK12826 3-ketoacyl-(acyl-carr 85.2 2.7 5.9E-05 33.4 6.0 77 63-153 4-92 (251)
339 PRK07063 short chain dehydroge 84.9 3.3 7.1E-05 33.4 6.3 79 63-153 5-95 (260)
340 PRK07326 short chain dehydroge 84.8 9.6 0.00021 30.0 9.0 75 64-153 5-91 (237)
341 PRK05867 short chain dehydroge 84.6 2.8 6.1E-05 33.6 5.8 78 63-153 7-95 (253)
342 PRK05854 short chain dehydroge 84.6 5.7 0.00012 33.3 7.8 80 62-153 11-102 (313)
343 PRK06701 short chain dehydroge 84.6 11 0.00024 31.1 9.5 78 62-153 43-133 (290)
344 PRK08862 short chain dehydroge 84.5 4.2 9.2E-05 32.4 6.7 77 63-152 3-91 (227)
345 PRK08339 short chain dehydroge 84.3 4.3 9.3E-05 33.0 6.8 79 63-153 6-94 (263)
346 PRK06935 2-deoxy-D-gluconate 3 84.2 3.5 7.5E-05 33.2 6.2 79 62-153 12-100 (258)
347 PRK01747 mnmC bifunctional tRN 84.2 15 0.00034 34.3 11.1 70 130-205 151-226 (662)
348 PF05206 TRM13: Methyltransfer 84.0 2.7 5.8E-05 34.6 5.3 31 64-94 18-55 (259)
349 PRK08213 gluconate 5-dehydroge 83.6 5.9 0.00013 31.8 7.3 78 62-153 9-98 (259)
350 cd05188 MDR Medium chain reduc 83.6 6.5 0.00014 31.3 7.6 94 63-181 133-233 (271)
351 PRK06949 short chain dehydroge 83.5 4.5 9.8E-05 32.4 6.6 78 62-153 6-95 (258)
352 PF07669 Eco57I: Eco57I restri 83.5 9.9 0.00021 26.5 7.5 61 144-206 2-80 (106)
353 PRK07523 gluconate 5-dehydroge 83.2 6.4 0.00014 31.5 7.4 78 62-153 7-96 (255)
354 COG4301 Uncharacterized conser 83.1 9.4 0.0002 31.3 7.9 111 64-185 78-198 (321)
355 PRK05876 short chain dehydroge 83.1 5.5 0.00012 32.7 7.0 77 63-153 4-92 (275)
356 PRK07062 short chain dehydroge 83.0 7.3 0.00016 31.4 7.6 81 62-153 5-96 (265)
357 PLN03154 putative allyl alcoho 82.9 3.5 7.6E-05 35.1 6.0 40 62-101 156-199 (348)
358 PF04378 RsmJ: Ribosomal RNA s 82.9 4 8.6E-05 33.3 5.9 112 71-197 62-181 (245)
359 PRK07530 3-hydroxybutyryl-CoA 82.8 5.1 0.00011 33.3 6.8 104 66-177 5-116 (292)
360 PRK07109 short chain dehydroge 82.8 18 0.0004 30.6 10.3 79 62-153 5-94 (334)
361 PRK05565 fabG 3-ketoacyl-(acyl 82.6 14 0.00031 29.1 9.1 77 63-153 3-92 (247)
362 PRK07819 3-hydroxybutyryl-CoA 82.4 6 0.00013 32.9 7.0 102 67-176 7-117 (286)
363 cd08281 liver_ADH_like1 Zinc-d 82.2 2.5 5.4E-05 36.3 4.8 40 63-102 190-233 (371)
364 PF02636 Methyltransf_28: Puta 82.0 4.7 0.0001 32.8 6.1 39 65-103 19-67 (252)
365 PRK06522 2-dehydropantoate 2-r 81.9 19 0.00041 29.8 9.9 96 67-181 2-101 (304)
366 PLN03209 translocon at the inn 81.9 7.6 0.00016 35.7 7.8 87 62-153 77-168 (576)
367 PRK08703 short chain dehydroge 81.8 9.9 0.00022 30.1 7.9 41 63-104 4-49 (239)
368 TIGR01963 PHB_DH 3-hydroxybuty 81.6 6.1 0.00013 31.4 6.6 74 66-153 2-87 (255)
369 PRK05808 3-hydroxybutyryl-CoA 81.5 4.4 9.6E-05 33.4 5.9 102 67-176 5-114 (282)
370 PF02558 ApbA: Ketopantoate re 81.4 6.5 0.00014 28.9 6.3 98 68-180 1-101 (151)
371 PRK12823 benD 1,6-dihydroxycyc 81.1 9.2 0.0002 30.7 7.5 78 62-152 5-92 (260)
372 PLN02586 probable cinnamyl alc 81.0 12 0.00026 32.0 8.6 31 64-94 183-215 (360)
373 PRK09260 3-hydroxybutyryl-CoA 80.8 6.9 0.00015 32.4 6.8 40 67-106 3-45 (288)
374 PRK08589 short chain dehydroge 80.8 9.5 0.00021 31.0 7.6 77 63-153 4-91 (272)
375 PRK06125 short chain dehydroge 80.8 10 0.00022 30.5 7.7 78 63-153 5-90 (259)
376 PRK05866 short chain dehydroge 80.6 5.2 0.00011 33.2 6.0 78 62-153 37-126 (293)
377 PRK08265 short chain dehydroge 80.3 21 0.00045 28.8 9.4 74 63-153 4-89 (261)
378 PF03269 DUF268: Caenorhabditi 80.3 0.98 2.1E-05 34.4 1.4 100 65-185 2-116 (177)
379 PRK07035 short chain dehydroge 80.2 8.7 0.00019 30.6 7.1 79 62-153 5-94 (252)
380 PRK07890 short chain dehydroge 80.1 7.6 0.00017 31.0 6.7 76 64-153 4-91 (258)
381 cd00755 YgdL_like Family of ac 80.0 6.7 0.00014 31.7 6.2 33 63-95 9-44 (231)
382 PRK12921 2-dehydropantoate 2-r 79.9 26 0.00056 29.0 10.1 98 67-180 2-102 (305)
383 COG0240 GpsA Glycerol-3-phosph 79.8 13 0.00028 31.7 8.0 117 67-197 3-122 (329)
384 cd01492 Aos1_SUMO Ubiquitin ac 79.8 8.1 0.00018 30.3 6.6 33 63-95 19-54 (197)
385 PRK07102 short chain dehydroge 79.7 9.8 0.00021 30.2 7.2 74 66-152 2-84 (243)
386 PRK08085 gluconate 5-dehydroge 79.7 9.2 0.0002 30.6 7.1 77 63-153 7-95 (254)
387 PRK07814 short chain dehydroge 79.6 7 0.00015 31.6 6.4 78 62-153 7-96 (263)
388 PRK07066 3-hydroxybutyryl-CoA 79.6 9.3 0.0002 32.5 7.2 102 66-174 8-113 (321)
389 PRK06720 hypothetical protein; 79.6 11 0.00023 28.8 7.0 78 63-153 14-102 (169)
390 PRK10458 DNA cytosine methylas 79.5 3.9 8.5E-05 36.6 5.1 41 65-105 88-130 (467)
391 PF02737 3HCDH_N: 3-hydroxyacy 79.3 5.9 0.00013 30.6 5.5 40 68-107 2-44 (180)
392 PRK06194 hypothetical protein; 79.1 5.3 0.00012 32.6 5.6 77 63-153 4-92 (287)
393 PRK07792 fabG 3-ketoacyl-(acyl 78.7 9.4 0.0002 31.8 7.1 80 61-153 8-98 (306)
394 PRK08267 short chain dehydroge 78.6 23 0.0005 28.4 9.2 72 66-153 2-86 (260)
395 TIGR02437 FadB fatty oxidation 78.6 7.8 0.00017 36.7 7.1 43 66-108 314-359 (714)
396 COG3392 Adenine-specific DNA m 78.5 3.1 6.7E-05 34.3 3.8 52 43-96 8-59 (330)
397 PRK07478 short chain dehydroge 78.5 6.9 0.00015 31.3 6.0 78 63-153 4-92 (254)
398 cd01078 NAD_bind_H4MPT_DH NADP 78.5 15 0.00033 28.4 7.7 33 62-94 25-60 (194)
399 PRK07791 short chain dehydroge 78.4 10 0.00022 31.3 7.1 78 63-153 4-101 (286)
400 KOG0822 Protein kinase inhibit 78.3 7.3 0.00016 35.3 6.3 96 66-177 369-475 (649)
401 PLN02662 cinnamyl-alcohol dehy 78.2 9.5 0.00021 31.7 7.0 78 64-153 3-85 (322)
402 PRK07666 fabG 3-ketoacyl-(acyl 77.7 7.5 0.00016 30.7 6.0 77 63-153 5-93 (239)
403 PRK09291 short chain dehydroge 77.6 10 0.00023 30.2 6.8 75 65-153 2-82 (257)
404 PRK07576 short chain dehydroge 77.6 12 0.00026 30.3 7.2 76 63-152 7-94 (264)
405 cd00401 AdoHcyase S-adenosyl-L 77.5 8 0.00017 34.1 6.4 87 62-180 199-289 (413)
406 PRK07806 short chain dehydroge 77.3 34 0.00073 27.1 10.0 76 63-152 4-92 (248)
407 PRK09242 tropinone reductase; 77.2 14 0.00031 29.5 7.6 81 62-153 6-97 (257)
408 PRK07774 short chain dehydroge 77.0 8.8 0.00019 30.5 6.2 77 63-153 4-92 (250)
409 PRK06128 oxidoreductase; Provi 76.9 41 0.00088 27.8 10.6 77 63-153 53-143 (300)
410 PRK12749 quinate/shikimate deh 76.9 25 0.00054 29.4 9.0 34 62-95 121-157 (288)
411 PLN02178 cinnamyl-alcohol dehy 76.9 18 0.00039 31.2 8.5 31 64-94 178-210 (375)
412 cd01075 NAD_bind_Leu_Phe_Val_D 76.7 10 0.00022 29.8 6.3 40 61-102 24-68 (200)
413 PRK08303 short chain dehydroge 76.7 11 0.00025 31.4 7.0 77 62-152 5-103 (305)
414 PRK08324 short chain dehydroge 76.5 21 0.00046 33.5 9.4 77 62-153 419-507 (681)
415 TIGR02354 thiF_fam2 thiamine b 76.2 32 0.00069 27.0 9.0 34 62-95 18-54 (200)
416 PRK12481 2-deoxy-D-gluconate 3 76.2 13 0.00027 29.9 6.9 76 63-153 6-92 (251)
417 PRK11730 fadB multifunctional 76.2 10 0.00022 36.0 7.1 43 66-108 314-359 (715)
418 PLN02989 cinnamyl-alcohol dehy 76.1 10 0.00022 31.7 6.6 78 64-153 4-86 (325)
419 PRK08945 putative oxoacyl-(acy 75.9 18 0.00039 28.8 7.7 44 61-105 8-56 (247)
420 PRK07889 enoyl-(acyl carrier p 75.8 9.8 0.00021 30.7 6.2 75 63-153 5-94 (256)
421 PRK06172 short chain dehydroge 75.5 7 0.00015 31.2 5.3 77 63-153 5-93 (253)
422 COG3315 O-Methyltransferase in 75.3 18 0.00039 30.4 7.7 107 66-181 94-210 (297)
423 PRK08277 D-mannonate oxidoredu 75.2 9.1 0.0002 31.1 5.9 79 62-153 7-96 (278)
424 COG4798 Predicted methyltransf 75.1 24 0.00053 27.9 7.7 111 62-182 46-168 (238)
425 PRK12429 3-hydroxybutyrate deh 75.1 10 0.00022 30.2 6.1 76 64-153 3-90 (258)
426 KOG1099 SAM-dependent methyltr 75.0 8.3 0.00018 31.3 5.2 95 62-178 38-161 (294)
427 cd08237 ribitol-5-phosphate_DH 74.9 5.9 0.00013 33.6 4.9 90 63-180 162-256 (341)
428 PRK08251 short chain dehydroge 74.8 17 0.00037 28.8 7.3 77 65-153 2-90 (248)
429 PRK07097 gluconate 5-dehydroge 74.8 17 0.00036 29.3 7.4 79 62-153 7-96 (265)
430 PF01488 Shikimate_DH: Shikima 74.7 11 0.00024 27.4 5.7 72 62-153 9-84 (135)
431 PRK06113 7-alpha-hydroxysteroi 74.7 18 0.00039 28.9 7.5 80 61-153 7-97 (255)
432 cd01080 NAD_bind_m-THF_DH_Cycl 74.6 6.9 0.00015 29.9 4.7 34 61-94 40-76 (168)
433 PRK12475 thiamine/molybdopteri 74.3 13 0.00028 31.8 6.7 34 62-95 21-57 (338)
434 COG2933 Predicted SAM-dependen 74.1 22 0.00047 29.6 7.5 57 40-96 187-243 (358)
435 COG1004 Ugd Predicted UDP-gluc 74.1 5.3 0.00011 34.9 4.3 36 67-102 2-40 (414)
436 COG1565 Uncharacterized conser 73.9 20 0.00043 31.0 7.6 62 42-107 59-130 (370)
437 TIGR02356 adenyl_thiF thiazole 73.8 10 0.00023 29.7 5.7 34 62-95 18-54 (202)
438 PRK07904 short chain dehydroge 73.6 14 0.00029 29.9 6.5 77 64-153 7-96 (253)
439 cd08294 leukotriene_B4_DH_like 73.6 15 0.00033 30.5 7.0 41 62-102 141-185 (329)
440 PRK15116 sulfur acceptor prote 73.5 15 0.00033 30.4 6.7 34 62-95 27-63 (268)
441 cd08285 NADP_ADH NADP(H)-depen 73.5 12 0.00026 31.6 6.4 41 62-102 164-208 (351)
442 PLN02545 3-hydroxybutyryl-CoA 73.4 14 0.00031 30.7 6.7 41 66-106 5-48 (295)
443 PRK05650 short chain dehydroge 73.4 9.3 0.0002 31.0 5.5 73 67-153 2-86 (270)
444 PRK06130 3-hydroxybutyryl-CoA 73.4 18 0.00038 30.3 7.3 40 66-105 5-47 (311)
445 TIGR02441 fa_ox_alpha_mit fatt 73.2 7.8 0.00017 36.9 5.6 43 66-108 336-381 (737)
446 PRK12939 short chain dehydroge 73.1 16 0.00034 28.9 6.8 77 63-153 5-93 (250)
447 PRK12937 short chain dehydroge 72.9 44 0.00095 26.3 9.4 77 63-153 3-92 (245)
448 cd05278 FDH_like Formaldehyde 72.8 8.5 0.00018 32.3 5.3 39 64-102 167-209 (347)
449 PLN02514 cinnamyl-alcohol dehy 72.8 25 0.00055 29.9 8.3 32 63-94 179-212 (357)
450 PF05050 Methyltransf_21: Meth 72.6 13 0.00028 27.4 5.8 40 70-109 1-49 (167)
451 PF01795 Methyltransf_5: MraW 72.6 2.2 4.8E-05 36.0 1.6 45 63-107 19-66 (310)
452 PRK05872 short chain dehydroge 72.5 14 0.0003 30.6 6.5 77 62-153 6-94 (296)
453 PRK08416 7-alpha-hydroxysteroi 72.5 23 0.00049 28.5 7.6 79 62-152 5-95 (260)
454 cd08255 2-desacetyl-2-hydroxye 72.5 36 0.00077 27.5 8.8 40 62-101 95-138 (277)
455 PRK07533 enoyl-(acyl carrier p 72.3 19 0.00042 29.0 7.2 78 62-153 7-97 (258)
456 PRK06197 short chain dehydroge 72.0 23 0.0005 29.3 7.7 80 62-153 13-104 (306)
457 PRK06181 short chain dehydroge 71.8 37 0.0008 27.2 8.7 74 66-153 2-87 (263)
458 COG0863 DNA modification methy 71.7 19 0.00041 29.6 7.1 48 62-109 220-268 (302)
459 PRK07677 short chain dehydroge 71.3 19 0.00041 28.7 6.9 75 65-152 1-86 (252)
460 COG0541 Ffh Signal recognition 71.2 30 0.00066 30.7 8.3 105 67-186 102-227 (451)
461 TIGR01832 kduD 2-deoxy-D-gluco 71.2 21 0.00046 28.3 7.1 76 63-153 3-89 (248)
462 PRK08229 2-dehydropantoate 2-r 71.0 33 0.00072 29.0 8.6 99 66-179 3-106 (341)
463 cd08232 idonate-5-DH L-idonate 70.9 50 0.0011 27.5 9.6 93 64-179 165-261 (339)
464 cd08293 PTGR2 Prostaglandin re 70.8 9.6 0.00021 32.0 5.2 37 66-102 156-197 (345)
465 PRK06129 3-hydroxyacyl-CoA deh 70.6 27 0.00058 29.3 7.8 40 67-106 4-46 (308)
466 cd00757 ThiF_MoeB_HesA_family 70.5 13 0.00028 29.7 5.7 32 63-94 19-53 (228)
467 PRK08644 thiamine biosynthesis 70.5 19 0.00042 28.5 6.6 34 62-95 25-61 (212)
468 PRK11154 fadJ multifunctional 70.4 15 0.00032 34.8 6.8 43 66-108 310-356 (708)
469 PLN02657 3,8-divinyl protochlo 70.4 10 0.00022 33.0 5.4 77 61-151 56-143 (390)
470 TIGR03693 ocin_ThiF_like putat 70.2 31 0.00066 32.1 8.3 91 64-164 128-225 (637)
471 PRK08643 acetoin reductase; Va 69.7 21 0.00045 28.5 6.8 75 65-153 2-88 (256)
472 cd01485 E1-1_like Ubiquitin ac 69.7 11 0.00023 29.6 4.8 33 63-95 17-52 (198)
473 TIGR03201 dearomat_had 6-hydro 69.3 12 0.00026 31.7 5.5 40 62-101 164-206 (349)
474 COG0604 Qor NADPH:quinone redu 69.3 17 0.00037 30.9 6.4 97 63-180 141-241 (326)
475 PRK06114 short chain dehydroge 69.0 26 0.00055 28.0 7.2 77 63-153 6-95 (254)
476 PLN02253 xanthoxin dehydrogena 68.7 15 0.00033 29.9 5.8 77 62-153 15-103 (280)
477 TIGR03206 benzo_BadH 2-hydroxy 68.6 17 0.00038 28.7 6.1 76 64-153 2-89 (250)
478 PRK01438 murD UDP-N-acetylmura 68.4 34 0.00074 30.5 8.4 33 62-94 13-47 (480)
479 PRK12549 shikimate 5-dehydroge 68.3 69 0.0015 26.6 10.1 33 62-94 124-159 (284)
480 PRK11064 wecC UDP-N-acetyl-D-m 68.0 81 0.0017 27.8 10.5 35 66-100 4-41 (415)
481 TIGR02279 PaaC-3OHAcCoADH 3-hy 68.0 17 0.00037 33.0 6.3 43 66-108 6-51 (503)
482 PRK14106 murD UDP-N-acetylmura 67.8 24 0.00051 31.2 7.2 31 63-95 3-37 (450)
483 PRK07454 short chain dehydroge 67.7 17 0.00038 28.7 5.9 76 64-153 5-92 (241)
484 PRK08340 glucose-1-dehydrogena 67.6 21 0.00046 28.6 6.4 72 67-152 2-84 (259)
485 PRK08993 2-deoxy-D-gluconate 3 67.4 23 0.00051 28.3 6.6 77 62-153 7-94 (253)
486 PRK06718 precorrin-2 dehydroge 67.3 31 0.00067 27.1 7.1 32 62-93 7-40 (202)
487 PRK05599 hypothetical protein; 67.3 28 0.00062 27.8 7.1 74 67-153 2-86 (246)
488 PRK12935 acetoacetyl-CoA reduc 67.1 15 0.00032 29.1 5.4 77 63-153 4-93 (247)
489 PRK08278 short chain dehydroge 66.8 19 0.00041 29.3 6.0 77 63-153 4-99 (273)
490 PRK08628 short chain dehydroge 66.7 16 0.00035 29.2 5.6 77 62-153 4-92 (258)
491 KOG1205 Predicted dehydrogenas 66.4 23 0.00049 29.6 6.3 82 61-153 8-100 (282)
492 TIGR02818 adh_III_F_hyde S-(hy 66.3 15 0.00033 31.4 5.6 41 62-102 183-227 (368)
493 PLN02740 Alcohol dehydrogenase 66.2 14 0.00031 31.8 5.4 41 62-102 196-240 (381)
494 COG1250 FadB 3-hydroxyacyl-CoA 66.1 22 0.00047 30.1 6.2 43 66-108 4-49 (307)
495 PF04072 LCM: Leucine carboxyl 66.1 25 0.00053 27.0 6.2 92 66-166 80-182 (183)
496 PRK08268 3-hydroxy-acyl-CoA de 66.0 24 0.00051 32.1 6.9 43 66-108 8-53 (507)
497 PRK07417 arogenate dehydrogena 65.9 33 0.00072 28.2 7.3 35 67-101 2-39 (279)
498 PRK09186 flagellin modificatio 65.8 20 0.00044 28.4 6.0 77 64-152 3-91 (256)
499 PRK05875 short chain dehydroge 65.7 22 0.00047 28.8 6.2 79 63-153 5-95 (276)
500 cd01487 E1_ThiF_like E1_ThiF_l 65.7 36 0.00077 26.0 7.0 29 67-95 1-32 (174)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.98 E-value=2.9e-32 Score=210.74 Aligned_cols=166 Identities=39% Similarity=0.649 Sum_probs=104.0
Q ss_pred CeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhh
Q 027659 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV 97 (220)
Q Consensus 20 ~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~ 97 (220)
+..+.|++.. +.++|.++|+++.+|++||.++.... ..+...++++|||||||+|++|+++|.+ +++|++||++++
T Consensus 3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~ 80 (173)
T PF10294_consen 3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV 80 (173)
T ss_dssp ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence 4567888887 45899999999999999999863110 1135678999999999999999999998 567999999779
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcE
Q 027659 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTT 175 (220)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~ 175 (220)
+++++.|++.|+.. ...++.+..++|++..... ....+||+|+++|| |+.+.+++|++++.+++++++.
T Consensus 81 l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 81 LELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred hHHHHHHHHhcccc---------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999731 1468999999999854222 12468999999999 9999999999999999999999
Q ss_pred EEEEEEecCchHHHHHHHHHhc
Q 027659 176 ILLGYEIRSTSVHEQMLQMWKS 197 (220)
Q Consensus 176 ~~i~~~~r~~~~~~~f~~~~~~ 197 (220)
++++++.|... ...|++++++
T Consensus 152 vl~~~~~R~~~-~~~F~~~~~k 172 (173)
T PF10294_consen 152 VLLAYKRRRKS-EQEFFDRLKK 172 (173)
T ss_dssp EEEEEE-S-TG-GCHHHHHH--
T ss_pred EEEEeCEecHH-HHHHHHHhhh
Confidence 99999999654 5789988864
No 2
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=3e-21 Score=142.89 Aligned_cols=156 Identities=24% Similarity=0.346 Sum_probs=121.2
Q ss_pred ccccc-ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcc-cHHHHHHHHhC--CeEEEecch-hhHHHHHHHHHH
Q 027659 33 HLGTT-VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEW 107 (220)
Q Consensus 33 ~~g~~-~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~-G~~~l~la~~g--~~v~~~D~~-~~l~~~~~n~~~ 107 (220)
.+|.. +||++.+|+.++.++ |..++|++|||||.|- |+.|+++|... ..|..||.+ ++++..++-+-.
T Consensus 4 ntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred CCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 45554 999999999999988 5778999999999995 99999999654 369999984 599998887777
Q ss_pred hhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
|.. ....++.+...+|.... ......+||+|+++|| |+.+..++|+++|+++|+|.|..++..|.|..
T Consensus 77 n~~---------s~~tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~- 145 (201)
T KOG3201|consen 77 NMA---------SSLTSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ- 145 (201)
T ss_pred ccc---------cccceehhhHHHHhhhH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc-
Confidence 743 11234433333332222 2223569999999999 99999999999999999999999998888776
Q ss_pred HHHHHHHHHhc-CCeEEEeeC
Q 027659 187 VHEQMLQMWKS-NFNVKLVPK 206 (220)
Q Consensus 187 ~~~~f~~~~~~-~f~v~~v~~ 206 (220)
..+.|.+.++. +|.+..-+.
T Consensus 146 sL~kF~de~~~~gf~v~l~en 166 (201)
T KOG3201|consen 146 SLQKFLDEVGTVGFTVCLEEN 166 (201)
T ss_pred hHHHHHHHHHhceeEEEeccc
Confidence 57899988865 888865443
No 3
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=143.68 Aligned_cols=158 Identities=23% Similarity=0.283 Sum_probs=126.2
Q ss_pred eecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc
Q 027659 17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ 94 (220)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~ 94 (220)
-..+..+.|.|.+..+.+|.. +++|+.|..- . ..++|||||||+|++|+++|++ . ++++++|+
T Consensus 12 ~~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~----------~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEi 76 (248)
T COG4123 12 LFTFKQFFIIQDRCGFRYGTD----AILLAAFAPV----------P-KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEI 76 (248)
T ss_pred cccccceEEEeCCCccccccH----HHHHHhhccc----------c-cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEe
Confidence 346788999999988888877 9999999852 2 3679999999999999999987 4 67999998
Q ss_pred -hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCC---------------
Q 027659 95 -IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEH--------------- 157 (220)
Q Consensus 95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~--------------- 157 (220)
+++.+.|++|++.|.. ..++++.+.|..+..... ...+||+|+|||+ |...
T Consensus 77 q~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e 144 (248)
T COG4123 77 QEEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHE 144 (248)
T ss_pred CHHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhcc-cccccCEEEeCCCCCCCccccCcChhhhhhhhh
Confidence 6699999999999987 679999997776654322 2347999999999 5322
Q ss_pred ---ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659 158 ---LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV 204 (220)
Q Consensus 158 ---~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v 204 (220)
.++.+++...++|+++|.++++++. +....+++.++. +|...++
T Consensus 145 ~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 145 ITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred hcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEE
Confidence 3678999999999999999998864 334677777765 6665443
No 4
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.82 E-value=2.2e-19 Score=144.13 Aligned_cols=169 Identities=30% Similarity=0.463 Sum_probs=128.3
Q ss_pred CccccccccchHHHHHHHHhhccccCCCCCCC--C--CCCcEEEeCCcccHHHHHHHH-hCCeEEEecchhhHHHHHHHH
Q 027659 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSK--L--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNV 105 (220)
Q Consensus 31 ~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~--~--~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~~~~l~~~~~n~ 105 (220)
.......+|+++..+++++..+.......... + +..+|||||+|||++|+.+|. .+++|+.+|.+..++.++.|.
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence 35677889999999999998764210000001 1 245699999999999999998 678899999999999998887
Q ss_pred HHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC-ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 106 EWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~-fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
..|.....+. +..+.+..++|+.........+. ||+|+++|| |.++.++.++.++..+|..++.++++++.|
T Consensus 129 ~~~~~~l~~~------g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 129 DKNNIALNQL------GGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred hhhhhhhhhc------CCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 7776643321 34899999999998765544445 999999999 999999999999999999999999999999
Q ss_pred CchHHHHHHHHHh---cCCeEEEee
Q 027659 184 STSVHEQMLQMWK---SNFNVKLVP 205 (220)
Q Consensus 184 ~~~~~~~f~~~~~---~~f~v~~v~ 205 (220)
.....+.+.-.++ ..|++....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (248)
T KOG2793|consen 203 RDAAWEIEVLLFKKDLKIFDVVQES 227 (248)
T ss_pred cchHHHHHHHHhhhhhccceeeeEe
Confidence 9754444433333 345554443
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.81 E-value=1.5e-18 Score=133.89 Aligned_cols=135 Identities=26% Similarity=0.341 Sum_probs=105.5
Q ss_pred EEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhH
Q 027659 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL 98 (220)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l 98 (220)
.+++++.|+.++. ..+-.++.+|++++... .+++|||||||+|.+|+.+++.+.. |+++|. ++++
T Consensus 1 ~~~~~~~~gvFs~-~~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 1 ELEFITHPGVFSP-PRLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEEETTSTTT-TSHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred CEEEEECCCeeCC-CCCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 3678888877753 34556788999999865 5678999999999999999998765 999998 6699
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCC-----ChHHHHHHHHHhhCC
Q 027659 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEH-----LLEPLLQTIFALSGP 172 (220)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~-----~~~~l~~~l~~~l~~ 172 (220)
+.+++|++.|+. .++++...|+.+.. ...+||+|++|++ +... ....+++...++|+|
T Consensus 69 ~~a~~n~~~n~~------------~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 69 ELAKRNAERNGL------------ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp HHHHHHHHHTTC------------TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhcCc------------cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence 999999999986 23788877765432 2579999999999 4443 367888888999999
Q ss_pred CcEEEEEEEecC
Q 027659 173 KTTILLGYEIRS 184 (220)
Q Consensus 173 ~g~~~i~~~~r~ 184 (220)
||.++++.....
T Consensus 133 ~G~l~lv~~~~~ 144 (170)
T PF05175_consen 133 GGRLFLVINSHL 144 (170)
T ss_dssp EEEEEEEEETTS
T ss_pred CCEEEEEeecCC
Confidence 999998776544
No 6
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.78 E-value=2.5e-18 Score=142.50 Aligned_cols=154 Identities=21% Similarity=0.346 Sum_probs=114.7
Q ss_pred cCeEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-h
Q 027659 19 LGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-I 95 (220)
Q Consensus 19 ~~~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~ 95 (220)
...++.|.-+|+ .|++|.+ +++.+..++|.+. ..+|++|||+|||+|+++++++++|++ |+++|+ +
T Consensus 126 ~~~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp 194 (295)
T PF06325_consen 126 PPDEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP 194 (295)
T ss_dssp STTSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC
T ss_pred CCCcEEEEECCCCcccCCCC--HHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH
Confidence 345677777884 4666655 8999999999876 347789999999999999999999995 999999 6
Q ss_pred hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcE
Q 027659 96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTT 175 (220)
Q Consensus 96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~ 175 (220)
.+++.+++|++.|+. ..++.+. ..... ...+||+|++|=. ...+..++..+.++++|||.
T Consensus 195 ~Av~~a~~N~~~N~~-----------~~~~~v~-----~~~~~--~~~~~dlvvANI~--~~vL~~l~~~~~~~l~~~G~ 254 (295)
T PF06325_consen 195 LAVEAARENAELNGV-----------EDRIEVS-----LSEDL--VEGKFDLVVANIL--ADVLLELAPDIASLLKPGGY 254 (295)
T ss_dssp HHHHHHHHHHHHTT------------TTCEEES-----CTSCT--CCS-EEEEEEES---HHHHHHHHHHCHHHEEEEEE
T ss_pred HHHHHHHHHHHHcCC-----------CeeEEEE-----Eeccc--ccccCCEEEECCC--HHHHHHHHHHHHHhhCCCCE
Confidence 699999999999998 3445442 11111 2489999999866 33356777778888999999
Q ss_pred EEEEEEecCchHHHHHHHHHhcCCeEEEee
Q 027659 176 ILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 205 (220)
Q Consensus 176 ~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~ 205 (220)
++++.-.... ...+.+.++++|++....
T Consensus 255 lIlSGIl~~~--~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 255 LILSGILEEQ--EDEVIEAYKQGFELVEER 282 (295)
T ss_dssp EEEEEEEGGG--HHHHHHHHHTTEEEEEEE
T ss_pred EEEccccHHH--HHHHHHHHHCCCEEEEEE
Confidence 9998877655 356677776688876543
No 7
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.78 E-value=5.8e-19 Score=134.91 Aligned_cols=128 Identities=25% Similarity=0.413 Sum_probs=109.8
Q ss_pred ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhh
Q 027659 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNT 109 (220)
Q Consensus 32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~ 109 (220)
..++...|.+++.+++|+..+ |+.++|++|||+|+|+|+.++++++.|++ |+.+|+ +..+..++.|++.|+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang 126 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG 126 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcC-------ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc
Confidence 457889999999999999998 78999999999999999999999999996 999999 668899999999998
Q ss_pred hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
. .+.+...|-.. .+..||+|+++|+ |+......++.+..++...|-.+++..+.|..
T Consensus 127 v-------------~i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 127 V-------------SILFTHADLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred c-------------eeEEeeccccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 6 56666644332 3678999999999 99999999999777776777777777777764
No 8
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=8.5e-18 Score=138.30 Aligned_cols=157 Identities=24% Similarity=0.321 Sum_probs=118.2
Q ss_pred eEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhh
Q 027659 21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (220)
Q Consensus 21 ~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~ 97 (220)
..+.|+-+|+ .+++|. .|++.+..++|.+. ..+|++|||+|||+|+++++++++|++ |+++|+ |.+
T Consensus 129 ~~~~i~lDPGlAFGTG~--HpTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~A 197 (300)
T COG2264 129 DELNIELDPGLAFGTGT--HPTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQA 197 (300)
T ss_pred CceEEEEccccccCCCC--ChhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHH
Confidence 4677777884 355554 48999999999875 348899999999999999999999996 999999 559
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
++.++.|++.|+.. ..+.... ...... ...++||+|++|=. .+-+..|...+..+++|||.++
T Consensus 198 V~aa~eNa~~N~v~-----------~~~~~~~---~~~~~~-~~~~~~DvIVANIL--A~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 198 VEAARENARLNGVE-----------LLVQAKG---FLLLEV-PENGPFDVIVANIL--AEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred HHHHHHHHHHcCCc-----------hhhhccc---ccchhh-cccCcccEEEehhh--HHHHHHHHHHHHHHcCCCceEE
Confidence 99999999999872 1111111 111111 12369999999876 3336688888999999999999
Q ss_pred EEEEecCchHHHHHHHHH-hcCCeEEEeeCC
Q 027659 178 LGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 207 (220)
Q Consensus 178 i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~ 207 (220)
++.-.... .+.+.+.+ +.+|++..+..+
T Consensus 261 lSGIl~~q--~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 261 LSGILEDQ--AESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred EEeehHhH--HHHHHHHHHhCCCeEeEEEec
Confidence 99876554 36677777 569998776543
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=5.2e-18 Score=134.28 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=92.6
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+.|++|||+|||-|+++..+|+.|+.|+++|. +++++.++..+..+++ ++.+.+... +++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-------------~i~y~~~~~---edl~~~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-------------NIDYRQATV---EDLASA 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-------------cccchhhhH---HHHHhc
Confidence 58999999999999999999999999999999 5599999999998876 344544222 223223
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
.++||+|+|.++ .|.++.+.+++.+.+++||||.++++..+|+..
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 479999999999 999999999999999999999999999999864
No 10
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.75 E-value=1.1e-16 Score=137.07 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred ceEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeE
Q 027659 12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNV 89 (220)
Q Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v 89 (220)
..+++++.+..+++...++.++. .++-.++.+|.++|... .+.+|||||||+|.+|+.+++.+ ++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~-~~LD~GtrllL~~lp~~-----------~~~~VLDLGCGtGvi~i~la~~~P~~~V 255 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHLPEN-----------LEGEIVDLGCGNGVIGLTLLDKNPQAKV 255 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCC-CCcChHHHHHHHhCCcc-----------cCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence 34678889999999999976664 47778899988887422 23589999999999999999874 589
Q ss_pred EEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC------ChHHH
Q 027659 90 ITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH------LLEPL 162 (220)
Q Consensus 90 ~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~------~~~~l 162 (220)
+++|.+ .+++.+++|++.|+.. ...++++...|.... . ...+||+|++|++|+.. ....+
T Consensus 256 ~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~~~D~l~~--~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 256 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNALSG--V--EPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred EEEECCHHHHHHHHHHHHHcCcc---------cCceEEEEEcccccc--C--CCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 999995 5999999999988641 012566655443221 1 24589999999995432 24578
Q ss_pred HHHHHHhhCCCcEEEEEEE
Q 027659 163 LQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 163 ~~~l~~~l~~~g~~~i~~~ 181 (220)
++...++|+|||.+++...
T Consensus 323 ~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 323 FHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHhcccCCEEEEEEe
Confidence 8888999999999999864
No 11
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.73 E-value=2.3e-16 Score=122.61 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=101.7
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
+.+|.+++.. .++++|||||||+|..++.++..+.+|+++|+ +++++.+++|+..++.
T Consensus 8 ~~~l~~~l~~-----------~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------- 66 (179)
T TIGR00537 8 SLLLEANLRE-----------LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV---------- 66 (179)
T ss_pred HHHHHHHHHh-----------cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 5666666642 35578999999999999999998889999999 6799999999987753
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC---------------------hHHHHHHHHHhhCCCcEEEE
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---------------------LEPLLQTIFALSGPKTTILL 178 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---------------------~~~l~~~l~~~l~~~g~~~i 178 (220)
++++...|+.+. ..++||+|+++++ +.... +..+++.+.++|+|||.+++
T Consensus 67 ---~~~~~~~d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 67 ---GLDVVMTDLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ---ceEEEEcccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 567777666443 2358999999988 32221 45678888999999999998
Q ss_pred EEEecCchHHHHHHHHHh-cCCeEEEeeCC
Q 027659 179 GYEIRSTSVHEQMLQMWK-SNFNVKLVPKA 207 (220)
Q Consensus 179 ~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~ 207 (220)
....... ...+++.++ .+|.++.+...
T Consensus 139 ~~~~~~~--~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 139 IQSSLNG--EPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred EEeccCC--hHHHHHHHHhCCCeEEEEEEe
Confidence 8765443 245555554 48988887654
No 12
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.4e-16 Score=129.16 Aligned_cols=156 Identities=21% Similarity=0.288 Sum_probs=113.8
Q ss_pred ecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecch
Q 027659 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI 95 (220)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~~ 95 (220)
..|..++|...|+.++.+ ++..+|.+|++.|. ....+ +|||||||.|.+|+.+|+... +++++|.+
T Consensus 124 ~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~----------~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn 191 (300)
T COG2813 124 LLGHELTFKTLPGVFSRD-KLDKGSRLLLETLP----------PDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN 191 (300)
T ss_pred hccCceEEEeCCCCCcCC-CcChHHHHHHHhCC----------ccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence 448899999999877765 77888999988884 33344 999999999999999999864 79999995
Q ss_pred -hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC-h----HHHHHHHHH
Q 027659 96 -EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL-L----EPLLQTIFA 168 (220)
Q Consensus 96 -~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~-~----~~l~~~l~~ 168 (220)
.+++.+++|+..|+.. +..+...+-.+. ..++||+|++||+ +.... . ..++....+
T Consensus 192 ~~Av~~ar~Nl~~N~~~------------~~~v~~s~~~~~-----v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~ 254 (300)
T COG2813 192 ARAVESARKNLAANGVE------------NTEVWASNLYEP-----VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAAR 254 (300)
T ss_pred HHHHHHHHHhHHHcCCC------------ccEEEEeccccc-----ccccccEEEeCCCccCCcchhHHHHHHHHHHHHH
Confidence 5999999999999862 222322211111 2348999999999 43322 2 378888899
Q ss_pred hhCCCcEEEEEEEecCchHHHHHHHHHhcCCe-EEEeeCC
Q 027659 169 LSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN-VKLVPKA 207 (220)
Q Consensus 169 ~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~-v~~v~~~ 207 (220)
.|++||.++|+.. |... ....+++.|. ++.+.+.
T Consensus 255 ~L~~gGeL~iVan-~~l~----y~~~L~~~Fg~v~~la~~ 289 (300)
T COG2813 255 HLKPGGELWIVAN-RHLP----YEKKLKELFGNVEVLAKN 289 (300)
T ss_pred hhccCCEEEEEEc-CCCC----hHHHHHHhcCCEEEEEeC
Confidence 9999999999887 4443 2344455554 5555443
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=1.2e-16 Score=114.40 Aligned_cols=103 Identities=23% Similarity=0.286 Sum_probs=83.3
Q ss_pred CCCcEEEeCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.+|||||||+|..++.+++ .+++|+++|+ +++++.+++++..... ..++++...|+ .. ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--Ccc
Confidence 467999999999999999998 6889999999 6799999999966554 57999999777 11 112
Q ss_pred cCCCccEEEEec-C-C-CC--CChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTD-V-Y-AE--HLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d-~-y-~~--~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..++||+|++.. + . .. +....+++.+.+.|+|||.+++..
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 356799999998 4 2 11 346788999999999999999865
No 14
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.69 E-value=1.1e-15 Score=127.32 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=111.9
Q ss_pred eEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhh
Q 027659 21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEV 97 (220)
Q Consensus 21 ~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~ 97 (220)
..+.+.-+|+ .+++| .++.+.+..++|... ..++++|||+|||+|.+++.+++.|+ +|+++|+ +.+
T Consensus 126 ~~~~i~ldpg~aFgtG--~h~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~a 194 (288)
T TIGR00406 126 DALIIMLDPGLAFGTG--THPTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLA 194 (288)
T ss_pred CcEEEEECCCCcccCC--CCHHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHH
Confidence 4456666774 34555 457788777877654 23678999999999999999999887 6999999 569
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
++.+++|+..|+. ..++.+...+ . .....++||+|+++-. ...+..++..+.++|+|||.++
T Consensus 195 l~~a~~n~~~n~~-----------~~~~~~~~~~---~--~~~~~~~fDlVvan~~--~~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 195 VESARKNAELNQV-----------SDRLQVKLIY---L--EQPIEGKADVIVANIL--AEVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred HHHHHHHHHHcCC-----------CcceEEEecc---c--ccccCCCceEEEEecC--HHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999998876 2344444322 1 1113568999999866 2235678889999999999999
Q ss_pred EEEEecCchHHHHHHHHHhcCCeEEEeeC
Q 027659 178 LGYEIRSTSVHEQMLQMWKSNFNVKLVPK 206 (220)
Q Consensus 178 i~~~~r~~~~~~~f~~~~~~~f~v~~v~~ 206 (220)
++...... ...+.+.++..|++..+..
T Consensus 257 ~sgi~~~~--~~~v~~~~~~~f~~~~~~~ 283 (288)
T TIGR00406 257 LSGILETQ--AQSVCDAYEQGFTVVEIRQ 283 (288)
T ss_pred EEeCcHhH--HHHHHHHHHccCceeeEec
Confidence 98765443 3566677766687766543
No 15
>PRK14967 putative methyltransferase; Provisional
Probab=99.68 E-value=4.2e-15 Score=119.46 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=107.4
Q ss_pred EEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHH
Q 027659 23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL 100 (220)
Q Consensus 23 ~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~ 100 (220)
+.+.+.++.+.... .+.+|++++... ...++.+|||+|||+|.+++.+++.++ +|+++|+ +++++.
T Consensus 7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 7 DALLRAPGVYRPQE----DTQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred ceeecCCCCcCCCC----cHHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 34455554333332 367788887643 233567999999999999999998876 7999999 569999
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC----------------------C
Q 027659 101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH----------------------L 158 (220)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~----------------------~ 158 (220)
+++|+..++. ++.+...|+.+. . ..++||+|+++++|... .
T Consensus 75 a~~n~~~~~~-------------~~~~~~~d~~~~--~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
T PRK14967 75 ARLNALLAGV-------------DVDVRRGDWARA--V--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV 137 (223)
T ss_pred HHHHHHHhCC-------------eeEEEECchhhh--c--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence 9999988754 467777666442 1 24689999999874322 1
Q ss_pred hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEeeC
Q 027659 159 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPK 206 (220)
Q Consensus 159 ~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~~ 206 (220)
+..+++.+.++|++||.+++....... ...+++.++. +|.++.+..
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEe
Confidence 456778888999999999987765533 2455566643 677665543
No 16
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.67 E-value=7.4e-17 Score=128.75 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=86.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
..|++|||+|||+|+++.-+|+.|+.|+++|. +++++.++.....+-.... ...-++++...+... .
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~------~~~y~l~~~~~~~E~------~ 155 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEG------AIAYRLEYEDTDVEG------L 155 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhcc------ccceeeehhhcchhh------c
Confidence 35788999999999999999999999999998 6799999988555433210 000123333322222 2
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
.++||.|+|+++ .|..+++.+++.+.++|+|+|.++|+...|.-
T Consensus 156 ~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 156 TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 456999999999 99999999999999999999999999988864
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=9.4e-16 Score=116.01 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=91.4
Q ss_pred CCCcEEEeCCcccHHHHHHH-Hh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la-~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+|||||||+|..+..++ .. +++|+++|+ +++++.++.+++.++. .++++...|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC-
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc-
Confidence 56899999999999999999 44 568999999 6799999999998875 4899999888763221
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
. .+.||+|+++.+ ++......+++.+.++|+++|.+++.......+
T Consensus 70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1 279999999999 888888999999999999999999988874443
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.67 E-value=4.5e-16 Score=130.96 Aligned_cols=108 Identities=17% Similarity=0.262 Sum_probs=89.4
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.++.+|||||||+|.++..+++.|++|+++|. +++++.+++++..+.. ..++.+...+. +.++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~da---e~l~~~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTA---EKLADE 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCH---HHhhhc
Confidence 46789999999999999999999999999998 6799999988665533 24677777443 333334
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
.++||+|++.++ ++..+...+++.+.++|+|||.++++...|.
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 578999999999 9888999999999999999999999876654
No 19
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.64 E-value=8.9e-15 Score=119.56 Aligned_cols=149 Identities=21% Similarity=0.338 Sum_probs=106.7
Q ss_pred eEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhh
Q 027659 21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (220)
Q Consensus 21 ~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~ 97 (220)
....+.-+|+ .+++| ..+.+..+.+++... ..++++|||+|||+|.+++.+++.|+. |+++|+ +.+
T Consensus 86 ~~~~i~i~p~~afgtg--~h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~ 154 (250)
T PRK00517 86 DEINIELDPGMAFGTG--THPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA 154 (250)
T ss_pred CeEEEEECCCCccCCC--CCHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 3345555663 34555 468888888888753 236789999999999999999988875 999999 569
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
++.+++|++.|+. ..++.+.. + ..+||+|+++-. ...+..++..+.++|+|||.++
T Consensus 155 l~~A~~n~~~~~~-----------~~~~~~~~---~--------~~~fD~Vvani~--~~~~~~l~~~~~~~LkpgG~li 210 (250)
T PRK00517 155 VEAARENAELNGV-----------ELNVYLPQ---G--------DLKADVIVANIL--ANPLLELAPDLARLLKPGGRLI 210 (250)
T ss_pred HHHHHHHHHHcCC-----------CceEEEcc---C--------CCCcCEEEEcCc--HHHHHHHHHHHHHhcCCCcEEE
Confidence 9999999998865 12233221 1 127999998754 2235678889999999999999
Q ss_pred EEEEecCchHHHHHHHHHh-cCCeEEEeeC
Q 027659 178 LGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 206 (220)
Q Consensus 178 i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~ 206 (220)
++...... ...+.+.++ .+|++..+..
T Consensus 211 lsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 211 LSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred EEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 98655433 345556664 4788866543
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=1e-14 Score=113.51 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=93.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.++.+|||+|||+|..++.++..+ ++|+++|. +++++.+++|++.++. .++++...|+.+..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~~--- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDFQ--- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhcc---
Confidence 357899999999999999998764 47999998 5699999999988764 36888887765531
Q ss_pred ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCCCC
Q 027659 140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES 210 (220)
Q Consensus 140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~~~ 210 (220)
..++||+|+++.. ..++.+++.+.++|+|||.+++.+............+.+ -.+|+..+.+.-..+
T Consensus 106 -~~~~fD~I~s~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 106 -HEEQFDVITSRAL---ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred -ccCCccEEEehhh---hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 2568999998653 346778888999999999999875433332222333333 247877766554443
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.63 E-value=6.2e-15 Score=116.33 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=81.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+.+|||+|||+|..++.+|+.|.+|+++|. +++++.++++++.++. .++.+...|+.+.. ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~ 93 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FD 93 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cC
Confidence 5679999999999999999999999999999 6699999999887654 35677776654331 24
Q ss_pred CCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEE
Q 027659 143 PPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
+.||+|+++.+ ++. .....+++.+.++|+|||.+++.
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 57999999998 543 35789999999999999986543
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=4.4e-15 Score=121.69 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=88.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++...+. ..++++...+..+... ...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~ 110 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLE 110 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcC
Confidence 4579999999999999999999999999999 6799999999887764 3567887766544321 235
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
+.||+|+++.+ ++......+++.+.++|+|||.+++.....
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 78999999999 777778899999999999999998876543
No 23
>PRK14968 putative methyltransferase; Provisional
Probab=99.62 E-value=2.4e-14 Score=111.63 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=101.6
Q ss_pred cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (220)
Q Consensus 39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (220)
++.+.+|++++.. .++++|||+|||+|..++.++..+.+|+++|. +++++.+++|+..++..
T Consensus 9 ~~~~~~l~~~~~~-----------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------ 71 (188)
T PRK14968 9 AEDSFLLAENAVD-----------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------ 71 (188)
T ss_pred chhHHHHHHhhhc-----------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence 4557777777753 36779999999999999999988889999999 67999999999887651
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC----------------------CChHHHHHHHHHhhCCCcE
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE----------------------HLLEPLLQTIFALSGPKTT 175 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~----------------------~~~~~l~~~l~~~l~~~g~ 175 (220)
...+.+...|+.+.. ....||+|+++++|.. ..+..+++.+.++|+|+|.
T Consensus 72 ----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 72 ----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 112677776665432 2347999999887322 1145678889999999999
Q ss_pred EEEEEEecCchHHHHHHHHHh-cCCeEEEeeC
Q 027659 176 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 206 (220)
Q Consensus 176 ~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~ 206 (220)
+++....... .+.+.+.+. .+|++..+..
T Consensus 144 ~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 144 ILLLQSSLTG--EDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred EEEEEcccCC--HHHHHHHHHHCCCeeeeeee
Confidence 8887654322 234455554 4787766543
No 24
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=2.5e-14 Score=121.83 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=87.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.++.+|||||||+|..+..+++. +++|+++|+ +.+++.++++++.++. ..++++...|..+ .+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~---~~~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALN---QPF 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCccc---CCC
Confidence 46789999999999999999975 789999999 5699999998887765 3578888866543 333
Q ss_pred cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.++.||+|++..+ ++..+...+++.+.++|+|||.++++.
T Consensus 183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 4678999999999 777788999999999999999999865
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=1.8e-14 Score=113.46 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=78.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+.+|||+|||+|..++.+|+.|.+|+++|+ +.+++.++++++.++. ++.+...|.... + .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~---~-~~ 92 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAA---A-LN 92 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhc---c-cc
Confidence 4579999999999999999999999999999 5699999998877654 345555444321 1 24
Q ss_pred CCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEE
Q 027659 143 PPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
++||+|+++.+ ++. .....+++.+.++|+|||.+++.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999999998 433 45788999999999999986554
No 26
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.59 E-value=4.9e-14 Score=119.79 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=96.7
Q ss_pred EEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhH
Q 027659 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVL 98 (220)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l 98 (220)
.+.+...|+.+.. ..+-.++.+|.+.+... ...+|||||||+|.+++.+++.+ .+|+++|. +.++
T Consensus 166 ~l~i~~~pgvFs~-~~lD~gt~lLl~~l~~~-----------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al 233 (342)
T PRK09489 166 GLTVKTLPGVFSR-DGLDVGSQLLLSTLTPH-----------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL 233 (342)
T ss_pred CEEEEeCCCCCCC-CCCCHHHHHHHHhcccc-----------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 4677777865543 34556677777776422 23479999999999999999875 47999999 5699
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC------CChHHHHHHHHHhhCC
Q 027659 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE------HLLEPLLQTIFALSGP 172 (220)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~------~~~~~l~~~l~~~l~~ 172 (220)
+.+++|++.|+. ..++...|... ...++||+|+++++|+. .....+++.+.++|+|
T Consensus 234 ~~A~~nl~~n~l-------------~~~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp 295 (342)
T PRK09489 234 ESSRATLAANGL-------------EGEVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS 295 (342)
T ss_pred HHHHHHHHHcCC-------------CCEEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence 999999999875 23444333221 13568999999998432 2357899999999999
Q ss_pred CcEEEEEEEe
Q 027659 173 KTTILLGYEI 182 (220)
Q Consensus 173 ~g~~~i~~~~ 182 (220)
||.++++...
T Consensus 296 gG~L~iVan~ 305 (342)
T PRK09489 296 GGELRIVANA 305 (342)
T ss_pred CCEEEEEEeC
Confidence 9999988754
No 27
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=9.9e-14 Score=114.90 Aligned_cols=99 Identities=24% Similarity=0.359 Sum_probs=78.4
Q ss_pred cEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
+|||||||+|.+++.+|..+. +|+++|+ +++++.+++|+..|++ .++.+...||-.. ..+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~-----~~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEP-----LRG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeecccc-----cCC
Confidence 799999999999999998865 7999999 6799999999999985 2455555577654 245
Q ss_pred CccEEEEecCCCCCC--------------------------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 144 PFDYIIGTDVYAEHL--------------------------LEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 144 ~fD~V~~~d~y~~~~--------------------------~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
+||+|++|++|-+.. +..++..+...|+|+|.+++-...
T Consensus 176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 999999999954332 335677777789998888876553
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.58 E-value=9.3e-14 Score=108.50 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=88.8
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.+|||+|||+|..++.+++. +++|+++|. +++++.+++|++.++. .++++...|..+. ..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~---~~ 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEF---GQ 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhC---CC
Confidence 3789999999999999999864 568999998 6699999999999875 3588888665443 22
Q ss_pred cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEE
Q 027659 141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 203 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~ 203 (220)
.++||+|+++.. ..++.+++.+.++|+|||.+++....... ..+.+..+ .++.++.
T Consensus 110 -~~~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 110 -EEKFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEE 166 (187)
T ss_pred -CCCccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEee
Confidence 568999998754 34688999999999999999987654332 33333332 2665543
No 29
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.58 E-value=9.4e-14 Score=113.48 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=98.8
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (220)
.+..|.+++..... ....+.+|||||||+|.+++.+++. +.+|+++|+ +++++.+++|+..|+
T Consensus 69 ~Te~Lv~~~l~~~~------~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------- 134 (251)
T TIGR03704 69 RTEFLVDEAAALAR------PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------- 134 (251)
T ss_pred cHHHHHHHHHHhhc------ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 46667766654321 1113458999999999999999865 458999999 679999999998764
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC---------------------------ChHHHHHHHHHhh
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH---------------------------LLEPLLQTIFALS 170 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~---------------------------~~~~l~~~l~~~l 170 (220)
+++...|+.+.... ...++||+|+++++|.+. .+..+++...++|
T Consensus 135 -------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L 206 (251)
T TIGR03704 135 -------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL 206 (251)
T ss_pred -------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 25666666442211 113579999999985321 0346777778899
Q ss_pred CCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEeeCCCC
Q 027659 171 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE 209 (220)
Q Consensus 171 ~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~~~ 209 (220)
+|||.+++.+.... .....+.++ .+|....+...++
T Consensus 207 ~~gG~l~l~~~~~~---~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 207 APGGHLLVETSERQ---APLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCCCEEEEEECcch---HHHHHHHHHHCCCCceeeEcccc
Confidence 99999998765432 245555554 4788777765554
No 30
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.58 E-value=1.4e-13 Score=118.96 Aligned_cols=146 Identities=20% Similarity=0.230 Sum_probs=101.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~ 140 (220)
+|++|||||||+|..++.++..|+ +|+++|. +.+++.+++|++.|+.. ..++++...|+.+.. ....
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHh
Confidence 678999999999999998887776 6999998 56999999999999861 136788886654321 1111
Q ss_pred cCCCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-----cCCeEEEee
Q 027659 141 VAPPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-----SNFNVKLVP 205 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-----~~f~v~~v~ 205 (220)
..++||+|+++++ |... .+..++....++|+|||.++.+.....-. .+.|.+.+. .+-++..+.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEEE
Confidence 2458999999998 5443 24556667788899999999866543332 244544432 345666666
Q ss_pred CCCCCcccC----CCCCCC
Q 027659 206 KAKESTMWG----NPLGLY 220 (220)
Q Consensus 206 ~~~~~~~~~----~~~~~~ 220 (220)
.....+++. .+++.|
T Consensus 369 ~~~~~~DhP~~~~~pe~~Y 387 (396)
T PRK15128 369 QFRQAADHPVIATYPEGLY 387 (396)
T ss_pred EcCCCCCCCCCCCCCCcCC
Confidence 665555554 455555
No 31
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=3.9e-14 Score=114.34 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=80.6
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+|.+|||+|||||.++..+++. + .+|+++|+ ++|++.+++++...+. .+|++.+ ++.+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~---~da~~l 110 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQ---GDAEDL 110 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE----BTTB-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEE---cCHHHh
Confidence 36789999999999999999875 3 47999999 5699999999987664 4788888 445556
Q ss_pred cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
+..+++||.|+++-. .+..+....++.+.++|+|||.+.+..-.+..
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 667889999999888 77778999999999999999998887765554
No 32
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.1e-14 Score=107.26 Aligned_cols=75 Identities=36% Similarity=0.554 Sum_probs=65.9
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+.+|+.|+|||||||.+|+.++.+|++ |+++|. +++++.+++|+..+ ..++.+...|..+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------------~g~v~f~~~dv~~~--- 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------------LGDVEFVVADVSDF--- 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------------CCceEEEEcchhhc---
Confidence 6779999999999999999999999985 999998 78999999999984 35899999776654
Q ss_pred cccCCCccEEEEecCC
Q 027659 139 KAVAPPFDYIIGTDVY 154 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y 154 (220)
..+||.++.|++|
T Consensus 106 ---~~~~dtvimNPPF 118 (198)
T COG2263 106 ---RGKFDTVIMNPPF 118 (198)
T ss_pred ---CCccceEEECCCC
Confidence 6789999999993
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=8.9e-15 Score=101.01 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=74.4
Q ss_pred EEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCcc
Q 027659 69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146 (220)
Q Consensus 69 LELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD 146 (220)
||+|||+|..+..+++. +.+|+++|. +++++.++++.... .+.+...|. ..++..++.||
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~d~---~~l~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---------------GVSFRQGDA---EDLPFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---------------TEEEEESBT---TSSSS-TT-EE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---------------CchheeehH---HhCcccccccc
Confidence 89999999999999999 778999999 56888888876543 345666444 44455678999
Q ss_pred EEEEecC-CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659 147 YIIGTDV-YAEHLLEPLLQTIFALSGPKTTILL 178 (220)
Q Consensus 147 ~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i 178 (220)
+|+++.+ ++.+....+++.+.++|||||.+++
T Consensus 63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999 6668899999999999999999886
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=7e-14 Score=112.34 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.||+.+++.+..-+. .++++.. ++.+.+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~---~dAe~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVV---GDAENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEE---echhhCCC
Confidence 78999999999999999999875 57999999 5699999998876443 2377777 56677788
Q ss_pred cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
++++||+|.++-. .+..+++..++.+.|+|+|||++++....+.
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 8999999999988 8888999999999999999998887765543
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.55 E-value=7.7e-14 Score=117.02 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=86.5
Q ss_pred ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccC
Q 027659 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQM 115 (220)
Q Consensus 38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~ 115 (220)
-|.+.......+..- ...+|++|||+|||+|..+..++..|+ .|+++|.+ .++..++........
T Consensus 103 e~~s~~~~~~~l~~l--------~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----- 169 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL--------SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----- 169 (314)
T ss_pred HHHHHHHHHHHHHhc--------CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----
Confidence 466555555555432 356789999999999999999998887 49999984 476654332221111
Q ss_pred CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..++.+..++..+. +. ...||+|+++.+ |+..+...+++.++++|+|||.+++..
T Consensus 170 ------~~~v~~~~~~ie~l---p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 170 ------DKRAILEPLGIEQL---HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ------CCCeEEEECCHHHC---CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 23566666544332 22 347999999999 999999999999999999999999864
No 36
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=1.2e-14 Score=104.86 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=82.9
Q ss_pred CCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
|.+|||+|||+|...+.+++.+ .+++++|+ +.+++.++.|+..++. ..++++...|+.+.. .....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~-~~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLP-EPLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHH-HTCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhch-hhccC
Confidence 4689999999999999999998 78999999 6799999999998876 457899887775442 11246
Q ss_pred CCccEEEEecCCCCC---------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 143 PPFDYIIGTDVYAEH---------LLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 143 ~~fD~V~~~d~y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
++||+|+++++|... ....+++.+.++|+|||.+++..+
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 799999999994421 246789999999999999998764
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=116.88 Aligned_cols=104 Identities=20% Similarity=0.215 Sum_probs=79.8
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
..+|++|||||||+|..+..++..|++ |+++|.+ .++...+........ ..++.+...+..+. +
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----------~~~i~~~~~d~e~l---p 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----------DQRAHLLPLGIEQL---P 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCCHHHC---C
Confidence 457899999999999999999998875 9999984 455433322221111 24688887665433 3
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
. .+.||+|++..+ |+..+...+++.+.+.|+|||.+++..
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 578999999999 998999999999999999999998764
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=7.1e-14 Score=116.46 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=80.9
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
++.+|||+|||+|..++.+++.|.+|+++|. +.+++.+++++..+++ ++++...|..... ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----IQ 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----cc
Confidence 4569999999999999999999999999999 5699999999887654 5666665543321 25
Q ss_pred CCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 143 PPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 143 ~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
++||+|+++.+ ++ .+....+++.+.++|+|||.+++..
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 68999999988 54 3467899999999999999976643
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=1.5e-13 Score=107.45 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=85.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+.+|||+|||+|.+++.+++.+ .+|+++|. +++++.+++|++.++. .++++...+... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~~-----~ 93 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAPI-----E 93 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCchh-----h
Confidence 67799999999999999999864 47999999 6799999999988764 356766644311 1
Q ss_pred cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCe
Q 027659 141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 200 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~ 200 (220)
...+||+|+++.. ...+..+++.+.+.|+|||.+++....... ...+.+.++ .+|+
T Consensus 94 ~~~~~D~v~~~~~--~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l~~~g~~ 150 (187)
T PRK08287 94 LPGKADAIFIGGS--GGNLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHLEKCGVS 150 (187)
T ss_pred cCcCCCEEEECCC--ccCHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHHHHCCCC
Confidence 2457999998765 224678899999999999999886543222 345555554 3553
No 40
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.54 E-value=9e-14 Score=108.31 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=79.3
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..+..++||||||.|..++.||++|.+|+++|. +.+++.+++-++..++ +|+....|..+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD---- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence 346679999999999999999999999999999 4599998887777765 5788887765542
Q ss_pred cCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.++.||+|++.-+ ...+..+.+++.++..++|||.+++..
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3468999999877 345668899999999999999988754
No 41
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.53 E-value=3.6e-13 Score=115.93 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=95.8
Q ss_pred chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
+.+..+.+.+.... .++.+|||||||+|.+++.+++. +++|+++|+ +++++.+++|++.++.
T Consensus 236 peTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------ 300 (423)
T PRK14966 236 PETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------ 300 (423)
T ss_pred ccHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence 34667777776542 14568999999999999999864 467999999 6799999999987753
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC--------------------------ChHHHHHHHHHhh
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALS 170 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l 170 (220)
++++...||.+.. .+ ...+||+|++|++|... .+..+++.+.++|
T Consensus 301 -------rV~fi~gDl~e~~-l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 301 -------RVEFAHGSWFDTD-MP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred -------cEEEEEcchhccc-cc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 6888888875432 11 13579999999985321 1346777778889
Q ss_pred CCCcEEEEEEEecCchHHHHHHHHHh-cCCeEE
Q 027659 171 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 202 (220)
Q Consensus 171 ~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~ 202 (220)
+|||.+++....... +...+.++ .+|...
T Consensus 372 kpgG~lilEiG~~Q~---e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 372 AEGGFLLLEHGFDQG---AAVRGVLAENGFSGV 401 (423)
T ss_pred CCCcEEEEEECccHH---HHHHHHHHHCCCcEE
Confidence 999998875544322 34444443 366543
No 42
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.53 E-value=4.3e-13 Score=110.28 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=84.4
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.++.+|||+|||+|..+..+++. + .+|+++|. ++|++.++++...... ....++++...|.. .+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~~---~l 139 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDAT---DL 139 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEcccc---cC
Confidence 35779999999999999998875 4 47999999 5699999876542111 00246788875543 34
Q ss_pred cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
+..+++||+|+++.+ .+..+...+++.+.++|+|||.+++..-.+
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 445678999999998 777789999999999999999998876544
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.1e-13 Score=111.61 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=90.4
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
...+|++|||||||.|.+++.+|+. |.+|+++++ ++..+.+++.++.-++ ..++++...||.+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~--- 134 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDF--- 134 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccc---
Confidence 5668999999999999999999986 799999999 5599999999988877 46899999999876
Q ss_pred cccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 139 KAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
.++||-|++-++ .....++.+++.+.++|+|||.+++-...
T Consensus 135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 345999999999 34566999999999999999998865443
No 44
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.52 E-value=7.2e-13 Score=122.51 Aligned_cols=138 Identities=20% Similarity=0.146 Sum_probs=106.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+|++|||||||+|..++.++..|++ |+++|+ +.+++.+++|++.|+.. ..++++...|..+.. ...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHc
Confidence 6789999999999999999998885 999999 56999999999999861 146888887654321 112
Q ss_pred CCCccEEEEecC-CCCC-----------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCC
Q 027659 142 APPFDYIIGTDV-YAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 208 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~-----------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~ 208 (220)
.++||+|++.++ +... .+..++..+.++|+|||.++++...+..... .+.+ +.++.+..+....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~ 682 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKT 682 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCC
Confidence 468999999998 5321 2466888888899999999988766554322 3334 4589999999988
Q ss_pred CCcccCCC
Q 027659 209 ESTMWGNP 216 (220)
Q Consensus 209 ~~~~~~~~ 216 (220)
.+++|...
T Consensus 683 ~~~Dhp~~ 690 (702)
T PRK11783 683 LPPDFARN 690 (702)
T ss_pred CCCCCCCC
Confidence 88888754
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.51 E-value=2.2e-13 Score=112.37 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=86.2
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
....+++.+.. ....|.+|||||||.|.+++.+|+. |++|+++.+ ++..+.+++.++..++
T Consensus 48 ~~k~~~~~~~~-------~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl---------- 110 (273)
T PF02353_consen 48 ERKLDLLCEKL-------GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL---------- 110 (273)
T ss_dssp HHHHHHHHTTT-------T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----------
T ss_pred HHHHHHHHHHh-------CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----------
Confidence 34445555553 4568899999999999999999987 999999998 5688999999988776
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
..++++...||.+. +.+||.|++-++ .+ ...++.+++.+.++|+|||.+++-...
T Consensus 111 -~~~v~v~~~D~~~~------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 111 -EDRVEVRLQDYRDL------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred -CCceEEEEeecccc------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 56789988887654 349999999999 44 367899999999999999999865433
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.51 E-value=4.4e-13 Score=111.48 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=88.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|+..|+. ..++.+...|+.+. .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~-- 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--L-- 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--c--
Confidence 3468999999999999999986 458999999 6699999999998875 35788888776432 1
Q ss_pred cCCCccEEEEecCCCCC--------------------------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHH
Q 027659 141 VAPPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 194 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~ 194 (220)
...+||+|+++++|... .+..+++.+.++|+|||.+++-... .. +.+.+.
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~---~~v~~~ 261 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM---EALEEA 261 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH---HHHHHH
Confidence 23579999999884321 1245677788899999998876543 11 344455
Q ss_pred Hhc-CCeEE
Q 027659 195 WKS-NFNVK 202 (220)
Q Consensus 195 ~~~-~f~v~ 202 (220)
+.. +|...
T Consensus 262 ~~~~~~~~~ 270 (284)
T TIGR03533 262 YPDVPFTWL 270 (284)
T ss_pred HHhCCCcee
Confidence 543 55553
No 47
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.50 E-value=9.4e-13 Score=107.27 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=98.4
Q ss_pred ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhcc
Q 027659 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQ 114 (220)
Q Consensus 38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~ 114 (220)
.++.+..+.+.+.+.. ...+.+|||+|||+|..++.++.. +.+|+++|. +.+++.+++|+..++.
T Consensus 69 p~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---- 136 (251)
T TIGR03534 69 PRPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---- 136 (251)
T ss_pred CCCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence 3456667777766542 124568999999999999999986 457999998 6699999999988765
Q ss_pred CCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC-CC--------------------------hHHHHHHHH
Q 027659 115 MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE-HL--------------------------LEPLLQTIF 167 (220)
Q Consensus 115 ~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~-~~--------------------------~~~l~~~l~ 167 (220)
.++.+...|+.+.. ..++||+|+++++|.. .. +..+++.+.
T Consensus 137 --------~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~ 204 (251)
T TIGR03534 137 --------DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAP 204 (251)
T ss_pred --------CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHH
Confidence 36788887765421 2568999999988332 10 236778888
Q ss_pred HhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEe
Q 027659 168 ALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 204 (220)
Q Consensus 168 ~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v 204 (220)
++|+|||.+++....... +.+.+.++ .+|+...+
T Consensus 205 ~~L~~gG~~~~~~~~~~~---~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 205 RLLKPGGWLLLEIGYDQG---EAVRALFEAAGFADVET 239 (251)
T ss_pred HhcccCCEEEEEECccHH---HHHHHHHHhCCCCceEE
Confidence 899999999987654332 23334443 46754333
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=6.1e-13 Score=106.79 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=95.1
Q ss_pred CcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
++|||+|||+|..+..+++.. .+|+++|+ +++++.+++++...+. ..++++...|..... ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~ 65 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP 65 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence 479999999999999998763 57999999 6699999999887665 457888887764331 14
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------------hHHHHHHHHHh-cCCeEEEee
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVP 205 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------------~~~~~f~~~~~-~~f~v~~v~ 205 (220)
++||+|++..+ ++......+++.+.++|+|||.+++....... .....+.+.++ .+|++....
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 58999999999 77778999999999999999999987643210 01245556664 478876543
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=6.7e-13 Score=108.44 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=79.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+.+|||+|||+|..+..++..+.+|+++|+ +++++.++++.. .+.+...|+.. .+..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----------------~~~~~~~d~~~---~~~~~ 101 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----------------ADHYLAGDIES---LPLAT 101 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCCEEEcCccc---CcCCC
Confidence 4678999999999999999988999999999 668888876632 12444544433 33345
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
++||+|+++.+ .+......+++.+.++|+|||.++++...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 68999999998 77778999999999999999999988644
No 50
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=2.8e-13 Score=106.72 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=84.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.+.+|||||||+|.+++.++..+ ++|+++|. +++++.+++|++.++. .++.+...|+.+.. ...
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~ 118 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQP 118 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhc
Confidence 56799999999999999765554 57999998 6799999999999875 36888887664321 112
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHh--hCCCcEEEEEEEecC
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIRS 184 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~--l~~~g~~~i~~~~r~ 184 (220)
...||+|+++++|.....+.+++.+... ++|++.+|+.+..+.
T Consensus 119 ~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 119 GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 3469999999888888888888888774 789999999877643
No 51
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.50 E-value=6.2e-13 Score=110.66 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=81.1
Q ss_pred CcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+|||+|||+|.+++.++... .+|+++|+ +++++.+++|+..++. ..++.+...||.+.. ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~ 180 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG 180 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence 689999999999999999864 58999999 6699999999998875 345889988876531 22
Q ss_pred CCccEEEEecCCCCC--------------------------ChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 143 PPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 143 ~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
.+||+|+++++|... .+..++....++|+|||.+++.....
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 379999999874321 24457777888899999988866543
No 52
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.49 E-value=1.5e-12 Score=114.69 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=102.9
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
+..|.+.+.+.. ....+.+|||||||+|..++.+|+.+.+|+++|. ++|++.+++|++.|+.
T Consensus 282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------- 344 (443)
T PRK13168 282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL---------- 344 (443)
T ss_pred HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 456666665542 2335679999999999999999998889999999 6699999999998875
Q ss_pred CCCceEEEEeeeCCCCC-ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCC
Q 027659 121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 199 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~-~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f 199 (220)
.++++...|+.+... .+.....||+|+++++|.. ....++.+.+ ++|++.+|+++...+-. +......+.+|
T Consensus 345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp~tla--RDl~~L~~~gY 417 (443)
T PRK13168 345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVSCNPATLA--RDAGVLVEAGY 417 (443)
T ss_pred --CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEEeChHHhh--ccHHHHhhCCc
Confidence 468999988754321 1122457999999888543 3455666665 58999999998654432 23223336689
Q ss_pred eEEEeeCCCC
Q 027659 200 NVKLVPKAKE 209 (220)
Q Consensus 200 ~v~~v~~~~~ 209 (220)
+++.+.--++
T Consensus 418 ~l~~i~~~Dm 427 (443)
T PRK13168 418 RLKRAGMLDM 427 (443)
T ss_pred EEEEEEEecc
Confidence 9988754433
No 53
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.48 E-value=7.1e-13 Score=106.87 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=82.8
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+|||+|||+|..+..+++. + .+|+++|+ +++++.+++++..++. .++++...|.... +
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~---~ 109 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAMEL---P 109 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhcC---C
Confidence 5789999999999999999865 3 47999999 6799999999876543 4677777655432 2
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
...++||+|+++.+ .+......+++.+.++|+|||.+++...
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 34578999999888 6667788999999999999999987653
No 54
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=5.9e-13 Score=109.58 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCCcccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
..++.+|||||||+|..+..++. .+++|+++|. +++++.++++... ..++.+...|... .+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~i~~~~~D~~~---~~ 112 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------------KNKIEFEANDILK---KD 112 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------------CCceEEEECCccc---CC
Confidence 44678999999999999998886 4679999999 5699988876542 1367887766543 23
Q ss_pred ccCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 140 AVAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
..+++||+|++.++ ++.. ....+++.+.++|+|||.+++....
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 34578999999988 5543 6889999999999999999998653
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=9.3e-13 Score=117.05 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=85.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|.... ..++.+...|+... +.+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~---~~~ 329 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKK---TYP 329 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccC---CCC
Confidence 5779999999999999998864 778999999 56999998876522 24688888776543 223
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
.++||+|++..+ ++......+++.+.++|+|||.+++....+
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 568999999999 888889999999999999999999986544
No 56
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.47 E-value=4.2e-13 Score=101.68 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=78.2
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++++|||+|||+|..+..+++.|.+|+++|. +.+++. . ++.....+- .....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~----------------~~~~~~~~~---~~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R----------------NVVFDNFDA---QDPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T----------------TSEEEEEEC---HTHHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h----------------hhhhhhhhh---hhhhc
Confidence 457889999999999999999999999999998 557666 1 112222111 12223
Q ss_pred cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
..++||+|+++.+ ++......+++.+.++|+|||.++++.+.+..
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 4679999999999 88778999999999999999999999998753
No 57
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=7.9e-13 Score=107.89 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=82.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+.+|||||||+|..++.+++. +.+|+++|. ++|++.+++++..++. ..++++...|..+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~--- 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI--- 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhC---
Confidence 5679999999999999888762 468999999 6799999999987654 34688887655432
Q ss_pred cccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 139 KAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
+ ...+|+|+++-+ ++. .....+++.+.+.|+|||.++++...+.
T Consensus 122 ~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 122 A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred C--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 1 245999999877 433 2357899999999999999999876543
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.46 E-value=3.2e-12 Score=92.65 Aligned_cols=101 Identities=26% Similarity=0.316 Sum_probs=77.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.+|||+|||+|..+..+++. +.+|+++|. +.+++.+++|++.++. .++.+...+.... ...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~~ 84 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LED 84 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--Chh
Confidence 5679999999999999999976 357999999 5699999999988764 3566666543321 111
Q ss_pred cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..++||+|++... ......+++.+.++|+|||.+++..
T Consensus 85 ~~~~~D~v~~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGS--GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCc--chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 2458999998765 2335789999999999999998864
No 59
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=1.1e-12 Score=108.47 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh-CC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..+.+|||||||+|..++.+++. +. +|+++|. +++++.+++|...++. .++.+...|+.+ +
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~---l 140 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEA---L 140 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhh---C
Confidence 46889999999999998877764 54 6999999 6799999999887654 367777765543 3
Q ss_pred cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
+..++.||+|+++.+ ++......+++.+.++|+|||.+++..
T Consensus 141 ~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 141 PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 334568999999988 777778899999999999999999864
No 60
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.46 E-value=8.5e-13 Score=103.38 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
...|.+||||+||+|.+|+.++.+|+ +|+++|. +++++.+++|++.|+. ..++++...|........
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL 115 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence 35788999999999999999999998 5999998 6699999999999976 346777775553221100
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHH--hhCCCcEEEEEEEe
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFA--LSGPKTTILLGYEI 182 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~ 182 (220)
.....++.|+..|+ |.......++..+.. +++++|.+++-+..
T Consensus 116 ~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 116 AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 11233444445555 888888888887755 47788877765554
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.46 E-value=1.1e-12 Score=107.65 Aligned_cols=106 Identities=23% Similarity=0.254 Sum_probs=76.0
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
..++|++|||||||.|..+..++..|++ |+++|-.. +-.++-.+-..-.. ....+....+-. +.++
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg---------~~~~~~~lplgv---E~Lp 178 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP-LFYLQFEAIKHFLG---------QDPPVFELPLGV---EDLP 178 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh-HHHHHHHHHHHHhC---------CCccEEEcCcch---hhcc
Confidence 3679999999999999999999999997 99999522 22233222222210 012233333222 2333
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
. .+.||+|++..| ||..+.-..++.++..|++||.+++-.
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred c-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 3 578999999999 999999999999999999999988643
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=9.8e-13 Score=104.19 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=90.9
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee-CCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw-~~~~~~~ 139 (220)
.+.+|||||||+|..+..+++.. .+|+++|. +++++.+++++..++. .++.+...|+ ..... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-M 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-H
Confidence 56789999999999999998763 46999999 6699999999988754 4688888766 32110 0
Q ss_pred ccCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEE
Q 027659 140 AVAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVK 202 (220)
Q Consensus 140 ~~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~ 202 (220)
...+.||+|+++.+ +... ....+++.+.++|+|||.++++...+. .....++.+++ ++.++
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHhCccccc
Confidence 23568999998755 3221 257899999999999999999775433 34555666643 66554
No 63
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=109.37 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=79.7
Q ss_pred CcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+|||+|||+|.+++.++.. +.+|+++|+ +++++.+++|++.++. ..++.+...|+.+. . ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l--~~ 199 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--L--PG 199 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--C--CC
Confidence 58999999999999999976 458999999 6699999999998875 34688888776432 1 23
Q ss_pred CCccEEEEecCCCCC--------------------------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 143 PPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 143 ~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
++||+|+++++|... .+..+++.+.++|+|||.+++-..
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 579999999874211 134677888889999999988544
No 64
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=4.3e-12 Score=104.91 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=94.7
Q ss_pred chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
+.+..+.+++.... ...++.+|||+|||+|..++.++... .+|+++|. +.+++.+++|+. +..
T Consensus 91 ~~te~l~~~~~~~~-------~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~------ 156 (275)
T PRK09328 91 PETEELVEWALEAL-------LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL------ 156 (275)
T ss_pred CCcHHHHHHHHHhc-------cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC------
Confidence 44566777666331 23356789999999999999999875 57999999 569999999988 222
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC---------------------------ChHHHHHHHHHh
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH---------------------------LLEPLLQTIFAL 169 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~---------------------------~~~~l~~~l~~~ 169 (220)
..++.+...|+.... ..++||+|+++++|... .+..+++.+.++
T Consensus 157 -----~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 157 -----GARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred -----CCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 357888888774432 14689999999884321 134567777789
Q ss_pred hCCCcEEEEEEEecCchHHHHHHHHHh-cCCe
Q 027659 170 SGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 200 (220)
Q Consensus 170 l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~ 200 (220)
|+|||.+++....... +.+.+.++ .+|.
T Consensus 228 Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~ 256 (275)
T PRK09328 228 LKPGGWLLLEIGYDQG---EAVRALLAAAGFA 256 (275)
T ss_pred cccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence 9999999986543322 33444443 4664
No 65
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.45 E-value=5e-12 Score=99.82 Aligned_cols=125 Identities=19% Similarity=0.267 Sum_probs=89.4
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
....+.+|||+|||+|.+++.+++. + .+|+++|. +++++.+++|++.++. ..++.+...|..+.
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~- 104 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI- 104 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh-
Confidence 3457789999999999999999864 3 47999998 6799999999998874 24677777555332
Q ss_pred CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEE
Q 027659 137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 202 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~ 202 (220)
.+.....||.|+++.. ...+..+++.+.++|+|||.+++... ..+......+.++ .+|.++
T Consensus 105 -l~~~~~~~D~V~~~~~--~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 105 -LFTINEKFDRIFIGGG--SEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLE 166 (198)
T ss_pred -HhhcCCCCCEEEECCC--cccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeE
Confidence 1222468999997542 34567889999999999999887433 2223445555554 366443
No 66
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=2.5e-12 Score=105.43 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.++.+|||||||+|..+..+++. +.+|+++|. +++++.++++. .++.+...|.... .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d~~~~---~ 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------------PDCQFVEADIASW---Q 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECchhcc---C
Confidence 35789999999999999999876 468999999 56998887663 1345555443222 1
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
...+||+|+++.+ ++......+++.+.++|+|||.+++..
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 2458999999999 777778899999999999999998865
No 67
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.44 E-value=2.2e-12 Score=103.12 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
+++.+...+.+.. ...++.+|||+|||+|..+..+++... +|+++|. +++++.+++|+..++.
T Consensus 61 ~~p~~~~~~~~~l-------~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------ 127 (215)
T TIGR00080 61 SAPHMVAMMTELL-------ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------ 127 (215)
T ss_pred chHHHHHHHHHHh-------CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------
Confidence 3455555555442 344778999999999999999998743 4999998 6799999999988765
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.++++...|..+.. ....+||+|+++.. ...+.+.+.+.|+|||++++...
T Consensus 128 ------~~v~~~~~d~~~~~---~~~~~fD~Ii~~~~-----~~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 128 ------DNVIVIVGDGTQGW---EPLAPYDRIYVTAA-----GPKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ------CCeEEEECCcccCC---cccCCCCEEEEcCC-----cccccHHHHHhcCcCcEEEEEEc
Confidence 46788876654321 12458999998765 11223556788999999888653
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.44 E-value=1.9e-12 Score=104.59 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=90.9
Q ss_pred HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCC
Q 027659 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL 122 (220)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (220)
...+|+.... ...++.+|||||||+|..+..+++.+++|+++|. +++++.+++++..++.
T Consensus 35 ~~~~~l~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------ 95 (233)
T PRK05134 35 LRLNYIREHA-------GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------------ 95 (233)
T ss_pred HHHHHHHHhc-------cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------------
Confidence 4446666553 2446889999999999999999998989999998 5688999888776542
Q ss_pred CceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 123 ~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
++.+...++..... ...++||+|+++.+ .+......+++.+.++|+|||.++++...+
T Consensus 96 -~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 96 -KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred -ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 45666555543321 13468999999998 777788999999999999999999886543
No 69
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=106.95 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
..+.+|||||||+|.++..+++. +.+|+++|. +.+++.++++ ++++...|..+ ..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~---~~ 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRD---WK 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhh---CC
Confidence 36789999999999999999987 568999999 5688887542 24555544332 21
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..++||+|+++.+ ++......+++.+.++|+|||.+++..
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 2468999999999 777788999999999999999998864
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.44 E-value=2.6e-12 Score=114.61 Aligned_cols=104 Identities=24% Similarity=0.373 Sum_probs=79.5
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.+|||+|||+|.+++.++.. +++|+++|+ +++++.+++|+..++. ..++.+...||.+. .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~--~-- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFEN--I-- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhh--C--
Confidence 3468999999999999998864 568999999 5699999999988875 34688888776432 1
Q ss_pred cCCCccEEEEecCCCCC---------------------------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 141 VAPPFDYIIGTDVYAEH---------------------------LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~---------------------------~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
..++||+|+++++|... .+..+++.+.++|+|||.+++....
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 24589999999884321 1234667777889999999886543
No 71
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.42 E-value=1.6e-12 Score=105.46 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+.+|||||||+|..+..+++. +.+|+++|. ++|++.+++++..... ..++++...|+.+..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence 5678999999999999999874 467999999 6799999999876543 346788886665432
Q ss_pred cccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 139 KAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
...+|+|+++.+ .+. .....+++.+.+.|+|||.++++...+.
T Consensus 120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 235899999888 332 3467899999999999999999976554
No 72
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.42 E-value=8.8e-12 Score=99.39 Aligned_cols=158 Identities=15% Similarity=0.064 Sum_probs=100.9
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccC---C
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---N 116 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~ 116 (220)
-...|.+++... ....+.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+.. .++...... .
T Consensus 19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~ 87 (213)
T TIGR03840 19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE 87 (213)
T ss_pred CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence 466777777642 1125679999999999999999999999999999 558886532 222211000 0
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecC------ch-
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRS------TS- 186 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~------~~- 186 (220)
.......+|++.+.|..+... ...++||.|+-..+ ...+....+++.+.++|+|||.+++..-... +.
T Consensus 88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~ 165 (213)
T TIGR03840 88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPF 165 (213)
T ss_pred ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCC
Confidence 000013467777766655421 11357999998776 3344567799999999999997544422211 10
Q ss_pred --HHHHHHHHHhcCCeEEEeeCCCCCc
Q 027659 187 --VHEQMLQMWKSNFNVKLVPKAKEST 211 (220)
Q Consensus 187 --~~~~f~~~~~~~f~v~~v~~~~~~~ 211 (220)
..+.+.+.+...|+++.+......+
T Consensus 166 ~~~~~eL~~~f~~~~~i~~~~~~~~~~ 192 (213)
T TIGR03840 166 SVSPAEVEALYGGHYEIELLESRDVLE 192 (213)
T ss_pred CCCHHHHHHHhcCCceEEEEeeccccc
Confidence 1345556666678888887666553
No 73
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=4e-12 Score=107.61 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=89.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+.+|||||||+|..++.+++. +.+|+++|. +++++.++++... .++.+...|..+ .+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------------~~i~~i~gD~e~---lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------------KECKIIEGDAED---LPF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------------cCCeEEeccHHh---CCC
Confidence 4679999999999999988864 357999999 5699988887542 245666654433 333
Q ss_pred cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch--------------HHHHHHHHHhc-CCeEEEe
Q 027659 141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--------------VHEQMLQMWKS-NFNVKLV 204 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~--------------~~~~f~~~~~~-~f~v~~v 204 (220)
..+.||+|+++.+ .+....+.+++.+.++|+|||.+++........ ..+++.+.+++ +|+..++
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4568999999998 666678889999999999999998865432110 12455566654 7876555
Q ss_pred e
Q 027659 205 P 205 (220)
Q Consensus 205 ~ 205 (220)
.
T Consensus 255 ~ 255 (340)
T PLN02490 255 K 255 (340)
T ss_pred E
Confidence 3
No 74
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=8.7e-12 Score=100.58 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+|||+|||+|..+..++..+ .+|+++|. +.+++.+++++..++. ..++.+...|+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP--- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence 56799999999999999999876 67999999 5699999998876543 346788776665432
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
...+.||+|+++.+ .+......+++.+.++|+|||.+++...
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 23568999999888 7778899999999999999999887654
No 75
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=5.8e-13 Score=103.04 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=84.5
Q ss_pred CcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 144 (220)
.++||+|||.|.++..||..+.+++++|. +.+++.+++.+.. ..+|++...+.... .+.++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~----~P~~~ 106 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEF----WPEGR 106 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCC----CCCCC
Confidence 47999999999999999999888999999 5699999987653 25789988766443 25689
Q ss_pred ccEEEEecC-CCCCC---hHHHHHHHHHhhCCCcEEEEEEEecCch--------HHHHHHHHHhcCC-eEEEe
Q 027659 145 FDYIIGTDV-YAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS--------VHEQMLQMWKSNF-NVKLV 204 (220)
Q Consensus 145 fD~V~~~d~-y~~~~---~~~l~~~l~~~l~~~g~~~i~~~~r~~~--------~~~~f~~~~~~~f-~v~~v 204 (220)
||+|+.+.+ |.-.. +..+++.+...|+|||.+++++.. ... --+...+++.+.+ +|+.+
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-d~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-DANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE--HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-CCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 999999999 66543 566788888889999999998863 211 1244556665543 45544
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=7.1e-14 Score=97.96 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=59.2
Q ss_pred EEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-cCCC
Q 027659 69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPP 144 (220)
Q Consensus 69 LELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~~ 144 (220)
||+|||+|..+..++.. +.+++++|+ +.|++.+++++..... .+... ..+........ ..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFER--LRFDVLDLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EEE--EE--SSS---CCC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------cceeE--EEeecCChhhcccccc
Confidence 79999999999999987 668999999 5699888877776542 12222 22222221111 2259
Q ss_pred ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEE
Q 027659 145 FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTI 176 (220)
Q Consensus 145 fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~ 176 (220)
||+|+++.+ ++.+....+++.+.++|+|||.+
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999 77789999999999999999975
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=6.8e-12 Score=99.60 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (220)
+..+..++.+.. ...++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++.
T Consensus 57 ~p~~~~~~~~~l-------~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~------- 122 (205)
T PRK13944 57 APHMVAMMCELI-------EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY------- 122 (205)
T ss_pred hHHHHHHHHHhc-------CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------
Confidence 444455555442 2346779999999999999998875 358999998 6799999999988765
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
..++++...|..+. . ....+||.|+++.. .+ +.+.+.+.|+|||.+++...
T Consensus 123 ----~~~v~~~~~d~~~~--~-~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 123 ----WGVVEVYHGDGKRG--L-EKHAPFDAIIVTAAAST------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ----CCcEEEEECCcccC--C-ccCCCccEEEEccCcch------hhHHHHHhcCcCcEEEEEEc
Confidence 24577777554332 1 12468999998877 32 22467788999999988654
No 78
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.41 E-value=9.7e-12 Score=107.25 Aligned_cols=125 Identities=11% Similarity=0.094 Sum_probs=92.1
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+.+|||||||+|.+++.+|..+.+|+++|. +++++.+++|++.|+. .++++...|..+... ...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~ 298 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM 298 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence 5678999999999999999988888999998 6799999999999875 378888866643221 112
Q ss_pred CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCCC
Q 027659 143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 208 (220)
Q Consensus 143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~~ 208 (220)
.+||+|+.+++|. .....+++.+.. ++|++.+|+++...+.. +. +..+ .+|+++.+.--+
T Consensus 299 ~~~D~vi~DPPr~-G~~~~~l~~l~~-~~p~~ivyvsc~p~Tla--RD-l~~L-~gy~l~~~~~~D 358 (374)
T TIGR02085 299 SAPELVLVNPPRR-GIGKELCDYLSQ-MAPKFILYSSCNAQTMA--KD-IAEL-SGYQIERVQLFD 358 (374)
T ss_pred CCCCEEEECCCCC-CCcHHHHHHHHh-cCCCeEEEEEeCHHHHH--HH-HHHh-cCceEEEEEEec
Confidence 4699999988864 445666666654 68999999988654332 22 2333 688888774433
No 79
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=1.5e-11 Score=98.79 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=84.8
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..+|.+|||+|||+|..++.+++.. .+|+++|. ++|++.+.++++.. .++.+...|..++...
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERY 135 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchh
Confidence 4467899999999999999999863 47999998 66998887776532 2566666554332111
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------hHHHHHHHHHh-cCCeEEEeeC
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVKLVPK 206 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------~~~~~f~~~~~-~~f~v~~v~~ 206 (220)
....++||+|++.-.. +.....++..+.++|+|||.++++.+.|.- ..++...+.++ .+|++..+..
T Consensus 136 ~~l~~~~D~i~~d~~~-p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 136 AHVVEKVDVIYQDVAQ-PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred hhccccCCEEEECCCC-hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 1123569999953222 112345688999999999999996443321 11223344454 4898876543
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=3.1e-12 Score=100.67 Aligned_cols=120 Identities=12% Similarity=0.041 Sum_probs=87.9
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
...++||||||+|..++.+|+.. ..|+++|. .++++.+++++..+++ .++++...|..+......
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFF 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhC
Confidence 45689999999999999999874 46999998 6699999999987765 478888866643211111
Q ss_pred cCCCccEEEEecC--CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659 141 VAPPFDYIIGTDV--YAEHL-------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 197 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~ 197 (220)
..+.+|.|+.+-+ +.... .+.+++.+.++|+|||.+++...... ..+.+.+.+..
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--~~~~~~~~~~~ 147 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--LFEDMLKVLSE 147 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 2458999998855 43222 26799999999999999998775432 34555566654
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=5e-12 Score=107.33 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=84.8
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.+|.+|||+|||+|...+.++..+++|+++|+ +++++.++.|++.++. .++.+...|..+ ++..
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~------------~~i~~~~~D~~~---l~~~ 245 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI------------EDFFVKRGDATK---LPLS 245 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC------------CCCeEEecchhc---CCcc
Confidence 36779999999999999999989999999999 6699999999988775 236666655443 3333
Q ss_pred CCCccEEEEecCCCCC----------ChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 142 APPFDYIIGTDVYAEH----------LLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~----------~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
.+.||+|+++++|... .+..+++.+.+.|+|||.+++..+.+.
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 5789999999885421 257888999999999999998887653
No 82
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.40 E-value=9.7e-12 Score=106.66 Aligned_cols=142 Identities=20% Similarity=0.126 Sum_probs=106.0
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~ 139 (220)
.+|++||+|-|=||..|+.+|..|| +||.+|.+ .+++.+++|++.|++. ..++.+.+.|.-+.- ...
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHH
Confidence 4699999999999999999999999 69999995 5999999999999973 345666664432211 111
Q ss_pred ccCCCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-----hcCCeEEEe
Q 027659 140 AVAPPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV 204 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-----~~~f~v~~v 204 (220)
....+||+|+.-|+ |... .+.+|+..+.++|+|||.++++...+.-. .+.|.+.+ ..+..++.+
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEe
Confidence 23459999999999 8643 36778888899999999999988776654 34444433 235677777
Q ss_pred eCCCCCcccCC
Q 027659 205 PKAKESTMWGN 215 (220)
Q Consensus 205 ~~~~~~~~~~~ 215 (220)
......+++..
T Consensus 365 ~~~~~~~D~p~ 375 (393)
T COG1092 365 EGEGQPPDHPR 375 (393)
T ss_pred eccCCCCCccc
Confidence 77777777743
No 83
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.40 E-value=1e-12 Score=109.27 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=84.9
Q ss_pred CCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 60 ~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
+..++++.|||+|||||.+++.+|+.||+ |+++|.+++.+.+++.+..|++ ...|++......+. .+
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi-~L 123 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI-EL 123 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE-ec
Confidence 46789999999999999999999999986 9999999988999999999987 45677777444333 23
Q ss_pred cccCCCccEEEEecC-CC---CCChHHHHHHHHHhhCCCcEEE
Q 027659 139 KAVAPPFDYIIGTDV-YA---EHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~---~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
+.++.|+|++--. |+ ++.+..++-.-.+.|+|||.+|
T Consensus 124 --P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 --PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred --CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 3589999999887 54 5567777777778899998765
No 84
>PLN02672 methionine S-methyltransferase
Probab=99.39 E-value=9.3e-12 Score=118.04 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=101.6
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccC--
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQM-- 115 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~-- 115 (220)
-+..|.+.|.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|+..|++.-...
T Consensus 101 eTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 101 WSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred hHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 3667777764431 123467799999999999999999864 57999999 679999999999986410000
Q ss_pred --CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC-C----------------------------------
Q 027659 116 --NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-L---------------------------------- 158 (220)
Q Consensus 116 --~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-~---------------------------------- 158 (220)
........++++...||.+.. .....+||+|++|++|-.. .
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 000001246899998886542 1112369999999984211 0
Q ss_pred ----hHHHHHHHHHhhCCCcEEEEEEEecCchHHH-HHHHHHhcCCeEEEeeC
Q 027659 159 ----LEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNVKLVPK 206 (220)
Q Consensus 159 ----~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~-~f~~~~~~~f~v~~v~~ 206 (220)
+..++....++|+|||.+++-...+..+... .+++ +.+|+..++-+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~--~~gf~~~~~~~ 303 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE--RRGFRITKLWQ 303 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH--HCCCCeeEEee
Confidence 1456666777899999999877665554333 2333 24676655433
No 85
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=7.8e-12 Score=99.75 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
+++.+..++.+.. ...++.+|||+|||+|..+..+++. + .+|+++|. +++++.+++|++.++.
T Consensus 60 ~~p~~~~~~~~~l-------~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------ 126 (212)
T PRK13942 60 SAIHMVAIMCELL-------DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------ 126 (212)
T ss_pred CcHHHHHHHHHHc-------CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 4666666666553 3447889999999999999999876 3 58999998 6799999999987764
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.++++...|-.. ......+||+|++.... ..+...+.+.|+|||.+++..
T Consensus 127 ------~~v~~~~gd~~~---~~~~~~~fD~I~~~~~~-----~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 127 ------DNVEVIVGDGTL---GYEENAPYDRIYVTAAG-----PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ------CCeEEEECCccc---CCCcCCCcCEEEECCCc-----ccchHHHHHhhCCCcEEEEEE
Confidence 467777755322 11234689999976441 122345667899999988854
No 86
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=8.9e-13 Score=92.80 Aligned_cols=91 Identities=25% Similarity=0.306 Sum_probs=71.1
Q ss_pred EEEeCCcccHHHHHHHHhC-----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 68 vLELGcG~G~~~l~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
|||||||+|.....++... .+++++|+ +++++.++++....+ .++++.+.|+.+ ++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------------~~~~~~~~D~~~---l~~~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------------PKVRFVQADARD---LPFS 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------------TTSEEEESCTTC---HHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------------CceEEEECCHhH---Cccc
Confidence 7999999999999999774 67999999 669999999887643 267888866644 4445
Q ss_pred CCCccEEEEe-c-C-C-CCCChHHHHHHHHHhhCCCc
Q 027659 142 APPFDYIIGT-D-V-Y-AEHLLEPLLQTIFALSGPKT 174 (220)
Q Consensus 142 ~~~fD~V~~~-d-~-y-~~~~~~~l~~~l~~~l~~~g 174 (220)
.++||+|+++ . . | .++....+++.+.++++|||
T Consensus 65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 6799999994 3 3 3 34568899999999999987
No 87
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.37 E-value=2.2e-11 Score=105.22 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=77.8
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
..++.+|||||||+|.+++.+++. |.+|+++|. +++++.+++++. +. .+++...|+.+.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-------------~v~~~~~D~~~l---- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-------------PVEIRLQDYRDL---- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-------------eEEEEECchhhc----
Confidence 346789999999999999999875 789999999 669999988763 21 356666555332
Q ss_pred ccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.++||.|++..+ .+. ..++.+++.+.++|+|||.+++..
T Consensus 226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 468999999988 543 456889999999999999999864
No 88
>PRK08317 hypothetical protein; Provisional
Probab=99.37 E-value=1.6e-11 Score=98.77 Aligned_cols=104 Identities=19% Similarity=0.122 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..++.+|||+|||+|..+..++... .+|+++|. +.+++.++++.... ..++.+...|....
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~-- 81 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGL-- 81 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccC--
Confidence 4467899999999999999998753 47999998 56888888773221 24677777655432
Q ss_pred ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
+...+.||+|++..+ .+......+++.+.++|+|||.+++...
T Consensus 82 -~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 82 -PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred -CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 223578999999999 7777899999999999999999988753
No 89
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.36 E-value=2.8e-11 Score=102.11 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=90.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
++.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|++.|+. .++++...|..+... ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~~--~~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFAT--AQG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHHH--hcC
Confidence 5679999999999999999999989999998 6799999999999875 468888866543211 123
Q ss_pred CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCC
Q 027659 143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 207 (220)
Q Consensus 143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~ 207 (220)
+.||+|+.++++. .....+++.+.+ ++|++.+|+++...+.. +. ++.+ .+|+++.+.--
T Consensus 239 ~~~D~Vv~dPPr~-G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd-~~~l-~~y~~~~~~~~ 297 (315)
T PRK03522 239 EVPDLVLVNPPRR-GIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KD-LAHL-PGYRIERVQLF 297 (315)
T ss_pred CCCeEEEECCCCC-CccHHHHHHHHH-cCCCeEEEEECCcccch--hH-Hhhc-cCcEEEEEEEe
Confidence 4799999998832 223445555444 57889999988765543 22 2333 58888777433
No 90
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.35 E-value=1.2e-11 Score=99.06 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=94.3
Q ss_pred cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (220)
Q Consensus 39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (220)
|.......+|+.+..... +....+.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++++..++.
T Consensus 23 ~~~~~~~~~~i~~~~~~~---~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------- 92 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKN---KKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------- 92 (224)
T ss_pred HHhhHHHHHHHHHHHHhc---ccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------
Confidence 344455556776654211 11245789999999999999999988889999998 5699999988876643
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
.++.+...+..+... ...++||+|+++.+ ++......+++.+.++|+++|.++++...+
T Consensus 93 -----~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 93 -----LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -----CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 246666654433211 11368999999999 878889999999999999999998876533
No 91
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.35 E-value=3.8e-11 Score=105.50 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=91.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~~ 141 (220)
.+.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|+..|+. .++++...|+.+.. .....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhc
Confidence 4578999999999999999998888999998 6799999999999875 47888887664321 11112
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCC
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 208 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~ 208 (220)
...||+|+..+++. .....+++.+.+ ++|++.+|+++... +...=++.+ +.+|+++.+.--+
T Consensus 360 ~~~~D~vi~dPPr~-G~~~~~l~~l~~-l~~~~ivyvsc~p~---tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 360 GQIPDVLLLDPPRK-GCAAEVLRTIIE-LKPERIVYVSCNPA---TLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CCCCCEEEECcCCC-CCCHHHHHHHHh-cCCCEEEEEcCCHH---HHHHHHHHHHHCCeeEEEEEEec
Confidence 35799999888732 224566666554 78899999876533 332333334 5578887774433
No 92
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.35 E-value=7.1e-12 Score=100.38 Aligned_cols=100 Identities=21% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++.+|||+|||+|..+..++..+.+|+++|. +++++.+++++..+.. ..++.+...|+...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~----- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL----- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC-----
Confidence 346789999999999999999998889999999 6699999999876643 24678887665443
Q ss_pred cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEE
Q 027659 141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILL 178 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i 178 (220)
.++||+|+++++ ++. .....+++.+.+++++++.+.+
T Consensus 117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 268999999998 443 3466778888887776544443
No 93
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.35 E-value=1.9e-11 Score=102.76 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=83.1
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.++.+|||+|||+|..++.+++.. .+++++|.+++++.+++|+...+. ..++++...|..+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES---- 212 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC----
Confidence 356799999999999999999875 479999998899999999988776 457888886654321
Q ss_pred cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
...+|+|+.+.+ ++. +....+++.+.+.|+|||++++....
T Consensus 213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 124799988888 543 33568999999999999999998653
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.34 E-value=3.3e-11 Score=96.09 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (220)
++..+..++.... ...++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|+..++.
T Consensus 62 ~~p~~~~~l~~~l-------~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------- 125 (212)
T PRK00312 62 SQPYMVARMTELL-------ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL--------- 125 (212)
T ss_pred CcHHHHHHHHHhc-------CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC---------
Confidence 4555555555442 3446789999999999999988888778999998 6799999999987754
Q ss_pred CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.++++...|..+. .+ ..++||+|++... ...+.+.+.+.|+|||.+++...
T Consensus 126 ---~~v~~~~~d~~~~--~~-~~~~fD~I~~~~~-----~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 ---HNVSVRHGDGWKG--WP-AYAPFDRILVTAA-----APEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CceEEEECCcccC--CC-cCCCcCEEEEccC-----chhhhHHHHHhcCCCcEEEEEEc
Confidence 3577777554321 11 2368999998765 12234566788999999988765
No 95
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=5.3e-11 Score=95.27 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=97.3
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC---
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP--- 117 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~--- 117 (220)
...|.+|+... ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+.. .+++.......
T Consensus 23 ~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~ 91 (218)
T PRK13255 23 NPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEF 91 (218)
T ss_pred CHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccc
Confidence 56677777532 1225679999999999999999999999999999 568887532 23221100000
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch--------
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-------- 186 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~-------- 186 (220)
......+|++...|..+.... ....||.|+-..+ ...+....+++.+.++|+|||+.++......+.
T Consensus 92 ~~~~~~~v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~ 169 (218)
T PRK13255 92 EHYQAGEITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFS 169 (218)
T ss_pred cccccCceEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCC
Confidence 001134677777555443211 2357999998876 344556889999999999999755432211110
Q ss_pred -HHHHHHHHHhcCCeEEEeeCCC
Q 027659 187 -VHEQMLQMWKSNFNVKLVPKAK 208 (220)
Q Consensus 187 -~~~~f~~~~~~~f~v~~v~~~~ 208 (220)
..+.+.+.+...|+++.+....
T Consensus 170 ~~~~el~~~~~~~~~i~~~~~~~ 192 (218)
T PRK13255 170 VSDEEVEALYAGCFEIELLERQD 192 (218)
T ss_pred CCHHHHHHHhcCCceEEEeeecc
Confidence 1345556666568887776543
No 96
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=1.6e-11 Score=99.02 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
..+.+|||||||+|..+..+++.+. +|+++|. +++++.++.+.. .++.+...|..+. +
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~---~ 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKL---P 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhC---C
Confidence 3457899999999999999998764 5899998 557777765432 2456666555432 2
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
...++||+|+++.+ ++......+++.+.++|+|||.++++..
T Consensus 94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 24578999999999 7777889999999999999999998764
No 97
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.34 E-value=1.1e-10 Score=89.66 Aligned_cols=123 Identities=21% Similarity=0.258 Sum_probs=91.5
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
...+|.+++|+|||||.+++.+|..+. +|+++|. +++++.+++|++..+. +++.+... +...
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~g---~Ap~ 95 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------------DNLEVVEG---DAPE 95 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEec---cchH
Confidence 345788999999999999999996654 7999998 6799999999999885 68888874 3332
Q ss_pred -ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCC-eEEEe
Q 027659 138 -IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF-NVKLV 204 (220)
Q Consensus 138 -~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f-~v~~v 204 (220)
++.. ..||.|+...- ..++.+++++...|+|||++++-.-.- +.....++.++ .++ ++.++
T Consensus 96 ~L~~~-~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 96 ALPDL-PSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred hhcCC-CCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEE
Confidence 2222 27999996654 668999999999999999998755432 22334445454 366 55544
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.33 E-value=3.2e-11 Score=91.72 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=100.7
Q ss_pred cccc---hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecch-hhHHHHHHHHHHhhh
Q 027659 37 TVWD---ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTS 110 (220)
Q Consensus 37 ~~W~---~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~~-~~l~~~~~n~~~n~~ 110 (220)
.+|= +...+.+||..+....+++ -...+|||||||.|.+-..|++.|. +.+++||+ .++++|+.-++.++.
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~rv~---~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~ 116 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVISRVS---KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF 116 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhhhhc---ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC
Confidence 4564 4567788988775322211 1223899999999999999998875 49999995 599997776677765
Q ss_pred hhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCC-----C----CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVY-----A----EHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y-----~----~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
...|++.++|..++.. ..++||+|+--..| + ...+...+..+.++|+|+|+++|...
T Consensus 117 -----------~n~I~f~q~DI~~~~~---~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 117 -----------SNEIRFQQLDITDPDF---LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred -----------CcceeEEEeeccCCcc---cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 3459999999987632 34566666533321 1 12235567888999999999999888
Q ss_pred ecCchHHHHHHHHHhc-CCeE
Q 027659 182 IRSTSVHEQMLQMWKS-NFNV 201 (220)
Q Consensus 182 ~r~~~~~~~f~~~~~~-~f~v 201 (220)
+... .++.+.++. +|++
T Consensus 183 N~T~---dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 183 NFTK---DELVEEFENFNFEY 200 (227)
T ss_pred CccH---HHHHHHHhcCCeEE
Confidence 7654 455666654 5765
No 99
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.33 E-value=1.3e-11 Score=101.92 Aligned_cols=141 Identities=21% Similarity=0.180 Sum_probs=90.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+|++||+|-|=||..|+.++..|| +|+.+|.+ .+++.+++|++.|+.. ..++++...|.-+.-..-..
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~ 192 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKK 192 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhc
Confidence 689999999999999999999998 59999995 5999999999999872 35788887665332111012
Q ss_pred CCCccEEEEecC-CCCC------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEeeCCCCCccc
Q 027659 142 APPFDYIIGTDV-YAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKAKESTMW 213 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~~~~~~~~~ 213 (220)
.++||+||.-|+ |... .+..|+..+.++++|||.++++.....-. .+.|++.+.+ .-+++.+.+...+++|
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~~~~a~~~~~~~~~~~p~df 271 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAVAEAAREVEFIERLGQPPDF 271 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHHHHHHHHCEEEEEEE-----
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHHHHhCccceEeeeecccccc
Confidence 468999999999 7544 35678888888999999998877765543 3455555532 3344444444444444
Q ss_pred CC
Q 027659 214 GN 215 (220)
Q Consensus 214 ~~ 215 (220)
..
T Consensus 272 ~~ 273 (286)
T PF10672_consen 272 PD 273 (286)
T ss_dssp --
T ss_pred cc
Confidence 43
No 100
>PRK05785 hypothetical protein; Provisional
Probab=99.32 E-value=1.6e-11 Score=98.93 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.+.+|||||||||..+..+++. +.+|+++|. ++|++.++.+. ..... +.+.++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------------~~~~~---d~~~lp~~ 107 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------------DKVVG---SFEALPFR 107 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------------ceEEe---chhhCCCC
Confidence 3679999999999999999987 678999999 56999876431 11232 22334555
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCC
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPK 173 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~ 173 (220)
+++||+|+++.+ .+..+.+.+++.+.++|+|.
T Consensus 108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 789999999999 77888999999999999994
No 101
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.32 E-value=7e-11 Score=94.36 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=89.5
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHh-C-------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~-g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw 132 (220)
...+.++||++||||-+++.+.+. . .+|++.|+ ++||...++....-.+. ....+.+++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~--- 165 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVE--- 165 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEe---
Confidence 346789999999999999988864 1 56999999 78999998887665441 123467776
Q ss_pred CCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-hHHHHHH
Q 027659 133 GNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQML 192 (220)
Q Consensus 133 ~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-~~~~~f~ 192 (220)
++.+.++.++..||....+-- -+..++++.+++..++|||||++++-.-.... +....|.
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 566667778899998877666 66677999999999999999998865544433 3344443
No 102
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.31 E-value=4e-11 Score=100.77 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.++.+|||||||+|.+++.+++.|.+|+++|+ ++|++.+++|+....... ....++.+...|+.. .
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~------l 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLES------L 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhh------c
Confidence 46789999999999999999999999999999 569999999887542100 001356777765532 2
Q ss_pred CCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEE
Q 027659 142 APPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.++||+|++.++ ++.. ....+++.+.++ .+++ ++++.
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~-liIs~ 249 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKR-LIISF 249 (315)
T ss_pred CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCE-EEEEe
Confidence 468999999999 5433 244566666643 4444 45554
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.31 E-value=1.4e-10 Score=91.35 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=86.5
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .++++...|..+. ...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~~ 105 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LAQ 105 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hhh
Confidence 6779999999999999999865 468999998 6799999999988764 3577776554221 111
Q ss_pred cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH-HHHHHHHHh-cCCeEEEeeCC
Q 027659 141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV-HEQMLQMWK-SNFNVKLVPKA 207 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~-~~~f~~~~~-~~f~v~~v~~~ 207 (220)
....+|.|+... ...+..+++.+.++|+|||.+++......... ....++..+ .++++.++.-.
T Consensus 106 ~~~~~d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (196)
T PRK07402 106 LAPAPDRVCIEG---GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVN 171 (196)
T ss_pred CCCCCCEEEEEC---CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhh
Confidence 223467665432 23468899999999999999988876533211 122233332 36677666443
No 104
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=93.79 Aligned_cols=137 Identities=16% Similarity=0.195 Sum_probs=93.4
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecch-hhHHHHHHHHHHhhhhhccCCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPG 118 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~ 118 (220)
+.-+.+++.+..+. ...+++..+||+|||+|..++.++.. + ..|+++|.+ .++.++.+|+..+.+
T Consensus 130 TEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-------- 197 (328)
T KOG2904|consen 130 TEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-------- 197 (328)
T ss_pred HHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--------
Confidence 44455555543321 13345668999999999999998853 3 459999995 599999999999988
Q ss_pred CCCCCceEEEE----eeeCCCCCccccCCCccEEEEecCCC-CCC--------------------------hHHHHHHHH
Q 027659 119 SDLLGSIQAVE----LDWGNEDHIKAVAPPFDYIIGTDVYA-EHL--------------------------LEPLLQTIF 167 (220)
Q Consensus 119 ~~~~~~v~~~~----ldw~~~~~~~~~~~~fD~V~~~d~y~-~~~--------------------------~~~l~~~l~ 167 (220)
.+.+.+.. .||.+... ...+++|++++|++|- .++ +..+..-..
T Consensus 198 ---~g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 198 ---SGRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred ---cCceEEEecccccccccccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 46777764 45555443 2468999999999842 111 223555567
Q ss_pred HhhCCCcEEEEEEEec--CchHHHHHHHHH
Q 027659 168 ALSGPKTTILLGYEIR--STSVHEQMLQMW 195 (220)
Q Consensus 168 ~~l~~~g~~~i~~~~r--~~~~~~~f~~~~ 195 (220)
+.|+|||.+.+....| ++.....++...
T Consensus 273 R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~ 302 (328)
T KOG2904|consen 273 RMLQPGGFEQLELVERKEHSYLVRIWMISL 302 (328)
T ss_pred hhcccCCeEEEEecccccCcHHHHHHHHhc
Confidence 7789999999988744 443444554433
No 105
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.29 E-value=4.7e-12 Score=98.61 Aligned_cols=110 Identities=25% Similarity=0.312 Sum_probs=80.8
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~ 139 (220)
.+|.++|||-||+|.+|+.++.+||+ |+++|. ++++..+++|++.-+. ..++.+...|....- ...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence 58999999999999999999999985 999998 6799999999998765 235666664432221 111
Q ss_pred ccCCCccEEEEecCCCCCC-hHHHHHHHH--HhhCCCcEEEEEEEec
Q 027659 140 AVAPPFDYIIGTDVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR 183 (220)
Q Consensus 140 ~~~~~fD~V~~~d~y~~~~-~~~l~~~l~--~~l~~~g~~~i~~~~r 183 (220)
....+||+|++.|+|.... +..++..+. .+|+++|.+++-+..+
T Consensus 110 ~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 110 KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2367999999988888777 488888887 5789999998877665
No 106
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=5.5e-11 Score=95.65 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++....+. ..++.+...|+.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------c
Confidence 46779999999999999999999989999999 5699999998876543 2467787766322 2
Q ss_pred CCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCc
Q 027659 142 APPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKT 174 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g 174 (220)
.+.||+|+++.+ ++ ......+++.+.+++++++
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 468999999998 44 3345566677766654333
No 107
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.27 E-value=2.8e-10 Score=97.76 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=95.5
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (220)
.+..|.+++.+.. . ..+.++|||+||+|.+|+.+++...+|+++|. +++++.+++|+..|+.
T Consensus 191 ~~e~l~~~v~~~~-------~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~--------- 253 (362)
T PRK05031 191 VNEKMLEWALDAT-------K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI--------- 253 (362)
T ss_pred HHHHHHHHHHHHh-------h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC---------
Confidence 4566666666542 1 12357999999999999999987778999998 6799999999999976
Q ss_pred CCCCceEEEEeeeCCCCC-ccc------------cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 120 DLLGSIQAVELDWGNEDH-IKA------------VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 120 ~~~~~v~~~~ldw~~~~~-~~~------------~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
.++++...|..+... ... ...+||+|+..+++. ...+.+++.+.+ +++.+|+++...+-
T Consensus 254 ---~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-G~~~~~l~~l~~---~~~ivyvSC~p~tl- 325 (362)
T PRK05031 254 ---DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-GLDDETLKLVQA---YERILYISCNPETL- 325 (362)
T ss_pred ---CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC-CCcHHHHHHHHc---cCCEEEEEeCHHHH-
Confidence 378888866644211 100 012589999987752 345666666654 78899998876332
Q ss_pred HHHHHHHHHhcCCeEEEeeCCC
Q 027659 187 VHEQMLQMWKSNFNVKLVPKAK 208 (220)
Q Consensus 187 ~~~~f~~~~~~~f~v~~v~~~~ 208 (220)
-+.+ ..+.++|+++.+.--+
T Consensus 326 -arDl-~~L~~gY~l~~v~~~D 345 (362)
T PRK05031 326 -CENL-ETLSQTHKVERFALFD 345 (362)
T ss_pred -HHHH-HHHcCCcEEEEEEEcc
Confidence 1222 3333489888774443
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.27 E-value=1e-10 Score=93.09 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=82.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~- 138 (220)
.++.+|||||||+|..+..+++.. .+|+++|+.++ +. ..++.+...|+.+....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------------~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------------IVGVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------------CCCcEEEecCCCChHHHH
Confidence 367799999999999999998763 37999998552 11 13578888877664311
Q ss_pred ----cccCCCccEEEEecC-CCCCC-----------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659 139 ----KAVAPPFDYIIGTDV-YAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 202 (220)
Q Consensus 139 ----~~~~~~fD~V~~~d~-y~~~~-----------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~ 202 (220)
....+.||+|+++.. +.... ...+++.+.++|+|||.+++..... . .+..|+..++..|.-.
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~-~-~~~~~l~~l~~~f~~v 185 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG-E-GFDEYLREIRSLFTKV 185 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC-c-CHHHHHHHHHhCceEE
Confidence 123568999999775 33221 2467888999999999999865432 2 3567778888777554
Q ss_pred Ee
Q 027659 203 LV 204 (220)
Q Consensus 203 ~v 204 (220)
++
T Consensus 186 ~~ 187 (209)
T PRK11188 186 KV 187 (209)
T ss_pred EE
Confidence 44
No 109
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=2.9e-10 Score=99.81 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.+|.+|||+|||+|..++.++..+ .+|+++|. +++++.+++|++.++. ++.+...|..+....
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~- 308 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW- 308 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-
Confidence 367899999999999999999864 47999998 6699999999998765 356666554332111
Q ss_pred ccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
...++||.|++.++ .... ....++....++|+|||.++++..
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12457999998776 3210 123678888899999999888764
No 110
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.24 E-value=2.6e-10 Score=90.98 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+|||+|||+|..+..+++.+. +++++|. +.+++.++++.. . ..++.+...|..+. +
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-----------~~~i~~~~~d~~~~---~ 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-----------PLNIEFIQADAEAL---P 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-----------CCCceEEecchhcC---C
Confidence 678999999999999999987654 7999999 568888887765 1 23567777555432 2
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
...++||+|+++.. .+......+++.+.++|+|||.+++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 23468999999888 7777889999999999999999998764
No 111
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=4.7e-10 Score=98.67 Aligned_cols=109 Identities=21% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+|.+|||+|||+|..++.++.. + .+|+++|. +++++.+++|++.++. .++.+...|.......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhcccc
Confidence 36789999999999999999875 2 47999998 6699999999998875 3577777654433211
Q ss_pred -cccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 139 -KAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 139 -~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
....+.||.|++..+ .. ++ ....++..+.++|+|||.++.+...-
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 012468999997544 21 11 03567888888999999887765443
No 112
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-10 Score=91.51 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=85.8
Q ss_pred cccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (220)
Q Consensus 35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (220)
+.-.|=+.+.+...+.+.+ ...++.+|||+|||+|..+-.+|+...+|+.+|. ++..+.+++|++..+.
T Consensus 50 ~~gqtis~P~~vA~m~~~L-------~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~--- 119 (209)
T COG2518 50 GCGQTISAPHMVARMLQLL-------ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY--- 119 (209)
T ss_pred CCCceecCcHHHHHHHHHh-------CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC---
Confidence 3444555665555554442 4557899999999999999999999889999997 7799999999998875
Q ss_pred cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.||.+...| ...-.....+||.|+.... .+..+ +.+.+-|++||++++-..
T Consensus 120 ---------~nV~v~~gD---G~~G~~~~aPyD~I~Vtaa-a~~vP----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 120 ---------ENVTVRHGD---GSKGWPEEAPYDRIIVTAA-APEVP----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ---------CceEEEECC---cccCCCCCCCcCEEEEeec-cCCCC----HHHHHhcccCCEEEEEEc
Confidence 467777744 3322223578999987654 12223 444556889999887554
No 113
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=2.9e-10 Score=100.26 Aligned_cols=106 Identities=18% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+|||+|||+|..++.+++. ..+|+++|. +++++.+++|++.++. .++.+...|+.+...
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE-- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence 5679999999999999999875 357999999 6699999999998875 357888766654321
Q ss_pred ccCCCccEEEEecC-CCCCC----------------------hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 140 AVAPPFDYIIGTDV-YAEHL----------------------LEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~----------------------~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
...+.||+|++.++ +.... ...+++...++|+|||.++++...-
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 11368999998766 32211 1357888888999999988765443
No 114
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=5.9e-11 Score=106.86 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.|++.++++...++ .++.+...|..+... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~ 482 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S 482 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence 46789999999999999888864 458999999 559999988865443 255666644433211 1
Q ss_pred ccCCCccEEEEecC-CC-------------CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDV-YA-------------EHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~-------------~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
..+++||+|+++.+ ++ ......+++.+.++|+|||.+++...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 23568999999876 32 23467889999999999999999864
No 115
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.23 E-value=5e-10 Score=95.91 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=100.7
Q ss_pred CeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhH
Q 027659 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVL 98 (220)
Q Consensus 20 ~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l 98 (220)
|..+.+.+.++++.-. --.....|.+++.+.. . ..+.+|||||||+|.+|+.+++...+|+++|. ++++
T Consensus 163 ~~~~~~~~~~~~F~Q~--N~~~~~~l~~~v~~~~-------~-~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av 232 (353)
T TIGR02143 163 GREFIYRQVENSFTQP--NAAVNIKMLEWACEVT-------Q-GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSV 232 (353)
T ss_pred CeEEEEEECCCCcccC--CHHHHHHHHHHHHHHh-------h-cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHH
Confidence 3335566666443311 1123455555555432 1 12347999999999999999988778999998 6799
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-c---c---------CCCccEEEEecCCCCCChHHHHHH
Q 027659 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-A---V---------APPFDYIIGTDVYAEHLLEPLLQT 165 (220)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-~---~---------~~~fD~V~~~d~y~~~~~~~l~~~ 165 (220)
+.+++|++.|+. .++++...|..+..... . . ...||+|+..++. ....+.+++.
T Consensus 233 ~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~ 299 (353)
T TIGR02143 233 NAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKL 299 (353)
T ss_pred HHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCCcHHHHHH
Confidence 999999999976 36888876664321100 0 0 1248999998882 2334556565
Q ss_pred HHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCC
Q 027659 166 IFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 207 (220)
Q Consensus 166 l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~ 207 (220)
+. +|++.+|+++...+-.. . +..+.++|+++.+.--
T Consensus 300 l~---~~~~ivYvsC~p~tlaR--D-l~~L~~~Y~l~~v~~~ 335 (353)
T TIGR02143 300 VQ---AYERILYISCNPETLKA--N-LEQLSETHRVERFALF 335 (353)
T ss_pred HH---cCCcEEEEEcCHHHHHH--H-HHHHhcCcEEEEEEEc
Confidence 54 37899999887654332 2 2233345888777433
No 116
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.3e-11 Score=89.14 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=66.6
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+++|++++|||||+|.+++..+..+++ |++.|+ +++++.+++|++...+ ++.+.+.+..+.+..
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------------qidlLqcdildle~~ 111 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------------QIDLLQCDILDLELK 111 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------------hhheeeeeccchhcc
Confidence 6789999999999999999988888886 999999 7899999999998765 567777777665432
Q ss_pred cccCCCccEEEEecCCC
Q 027659 139 KAVAPPFDYIIGTDVYA 155 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~ 155 (220)
.+.||.++.+++|.
T Consensus 112 ---~g~fDtaviNppFG 125 (185)
T KOG3420|consen 112 ---GGIFDTAVINPPFG 125 (185)
T ss_pred ---CCeEeeEEecCCCC
Confidence 47899999999854
No 117
>PLN03075 nicotianamine synthase; Provisional
Probab=99.22 E-value=2e-10 Score=95.17 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=80.7
Q ss_pred CCCcEEEeCCcc-cHHHHHHHH-h--CCeEEEecc-hhhHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 64 KGKRVIELGAGC-GVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~-~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++|+|+|||. |+.++.++. . +.+++++|. +++++.++++++. .++ ..+++|...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----------~~rV~F~~~Da~~~~- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----------SKRMFFHTADVMDVT- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----------cCCcEEEECchhhcc-
Confidence 678999999996 566666663 3 447999999 6799999999864 444 467999997765531
Q ss_pred ccccCCCccEEEEecC-CC-CCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 138 IKAVAPPFDYIIGTDV-YA-EHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~-y~-~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.....||+|++.-+ |+ ......+++.+.+.|+|||.+++..
T Consensus 191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 12468999999955 66 4789999999999999999999865
No 118
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.22 E-value=1.1e-10 Score=103.82 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.+++|||||||+|..+..+++.+.+|+++|. +++++.++. .+.. ..++.+...|.... ..+.+.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~-----------~~~i~~~~~d~~~~-~~~~~~ 101 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH-----------YKNVKFMCADVTSP-DLNISD 101 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc-----------CCceEEEEeccccc-ccCCCC
Confidence 5679999999999999999998889999998 567765432 2322 24678888776432 123345
Q ss_pred CCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEE
Q 027659 143 PPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~ 179 (220)
++||+|+++.+ ++... ...+++.+.++|+|||.+++.
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999998 54333 678999999999999999885
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.22 E-value=1.3e-10 Score=80.35 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=77.0
Q ss_pred cEEEeCCcccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659 67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 144 (220)
+++|+|||+|..+..++. .+.+++++|. ++++..++++...+. ..++.+...++.+... ....+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence 589999999999999987 4567999998 557787775433332 2467777766655432 13568
Q ss_pred ccEEEEecC-CC-CCChHHHHHHHHHhhCCCcEEEEE
Q 027659 145 FDYIIGTDV-YA-EHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 145 fD~V~~~d~-y~-~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
||+|+++.+ +. ......+++.+.+.++++|.+++.
T Consensus 67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999 66 778899999999999999999876
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.21 E-value=1.2e-10 Score=94.27 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~ 138 (220)
+.++|||+|||+|..++.++.. +.+|+++|. +++++.+++|++.++. ..++++...|..+... +
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL 136 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence 6789999999999988888754 357999998 6799999999999987 4578888866644311 1
Q ss_pred c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 139 K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 139 ~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
. ...++||+|+.... ...+..++..+.++++|||.+++-
T Consensus 137 ~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 0 11468999996533 344567888888999999988764
No 121
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.21 E-value=6.7e-11 Score=97.80 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=84.0
Q ss_pred CCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 60 ~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..++.++.|||+|||+|++++.+|+.|++ |++++.++|.+.++.-++.|.+ ..+|.++.....+.+
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~GKiEdie-- 239 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPGKIEDIE-- 239 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccCcccccc--
Confidence 36789999999999999999999999986 9999999999999999999876 578888884443332
Q ss_pred cccCCCccEEEEecC-C---CCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 139 KAVAPPFDYIIGTDV-Y---AEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y---~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
.+++.|+||+-+. | ++..++..+-. ++.|+|.|..+=.
T Consensus 240 --LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMfPT 281 (517)
T KOG1500|consen 240 --LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMFPT 281 (517)
T ss_pred --CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCcccCc
Confidence 4689999999988 4 45555555544 4789999887743
No 122
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.21 E-value=3e-10 Score=90.07 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=66.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.+|||+|||+|..+..+++. +.+|+++|+ +++++.++++.. ++.+...+..+ +.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~~ 101 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----PF 101 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----CC
Confidence 5678999999999999999876 568999999 569999887632 23455544333 23
Q ss_pred cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..++||+|+++.+ ++.. ....+++.+.+++ ++.++++.
T Consensus 102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4678999999999 6543 3455666666655 34555543
No 123
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=1.6e-09 Score=89.44 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=93.3
Q ss_pred cccccchH-HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhh
Q 027659 35 GTTVWDAS-VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNT 109 (220)
Q Consensus 35 g~~~W~~s-~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~ 109 (220)
-.++|+-- .-|+.-|..-... -...++.+|||||||+|..+..+|.. + .+|+++|+ +++++.+...+..
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-- 179 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-- 179 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--
Confidence 47889752 2445445433211 12347789999999999999999976 3 36999998 4465444433221
Q ss_pred hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH--
Q 027659 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV-- 187 (220)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~-- 187 (220)
..+|.+...|...........+.||+|++.-. .++....++..+.++|+|+|.++|..+.+..+.
T Consensus 180 ------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~ 246 (293)
T PTZ00146 180 ------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTA 246 (293)
T ss_pred ------------cCCCEEEECCccChhhhhcccCCCCEEEEeCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCC
Confidence 13566666554433222223457999987654 344455677788999999999999776555332
Q ss_pred --HHHH---HHHHhc-CCeEEEe
Q 027659 188 --HEQM---LQMWKS-NFNVKLV 204 (220)
Q Consensus 188 --~~~f---~~~~~~-~f~v~~v 204 (220)
.+.| .+.+++ +|++.++
T Consensus 247 ~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 247 KPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred CHHHHHHHHHHHHHHcCCceEEE
Confidence 2222 244544 6876443
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=4.3e-10 Score=98.69 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+|.+|||+|||+|..++.++.. +.+|+++|. +++++.+++|++..+. .++++...|+.....
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh-
Confidence 36789999999999999988875 457999999 5699999999998765 357777766654321
Q ss_pred cccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 139 KAVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
...++||.|++..+ .... ....++....++|+|||.++++...-..
T Consensus 303 -~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 303 -YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred -hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 12467999998655 2211 1245677888889999998888765554
No 125
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.19 E-value=7e-11 Score=97.30 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=78.1
Q ss_pred CCCcEEEeCCcccH----HHHHHHHh-------CCeEEEecc-hhhHHHHHHHHHHh----hhhh---ccC---CC----
Q 027659 64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI---SQM---NP---- 117 (220)
Q Consensus 64 ~~~~vLELGcG~G~----~~l~la~~-------g~~v~~~D~-~~~l~~~~~n~~~n----~~~~---~~~---~~---- 117 (220)
++.+|+|+|||||- +++.++.. +.+|++||+ ++||+.+++++-.. .... .+. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 55556553 247999999 56999998864211 0000 000 00
Q ss_pred -CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 118 -~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
......+|.+...|..+.. ...++||+|+|..+ |.. +....+++.+.++|+|||.+++.....
T Consensus 179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 0001246778776655432 23578999999988 554 456789999999999999999976543
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.19 E-value=7.7e-10 Score=91.17 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.|.+|||+|||+|..++.+|.+ ...|+++|. +.+++.+++|++.++. .++.+...|.... +
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~---~ 135 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVF---G 135 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHh---h
Confidence 6789999999999999998875 247999998 6699999999998875 3577777554332 1
Q ss_pred ccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 140 AVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
...+.||.|+...+ .... ....+++...++|+|||.++.+......
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 12346999998766 4221 1235788888889999998877655544
No 127
>PHA03412 putative methyltransferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=92.57 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|+. ++.+...|....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------------~~~~~~~D~~~~-- 109 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------------EATWINADALTT-- 109 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------------CCEEEEcchhcc--
Confidence 3679999999999999999864 347999999 569999997743 245555444322
Q ss_pred ccccCCCccEEEEecCCCCC-------------ChHHHHHHHHHhhCCCcE
Q 027659 138 IKAVAPPFDYIIGTDVYAEH-------------LLEPLLQTIFALSGPKTT 175 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~~-------------~~~~l~~~l~~~l~~~g~ 175 (220)
. ...+||+||+|++|... .+..++....+++++|+.
T Consensus 110 -~-~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 110 -E-FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -c-ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 24589999999994411 144577777776666665
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=99.19 E-value=3.8e-10 Score=92.27 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+.+|||+|||+|.+++.++.. +.+|+++|+ +++++.+++|.. ++.+...|..+. . .
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------------~v~~v~~D~~e~---~-~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------------EAEWITSDVFEF---E-S 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------------CCEEEECchhhh---c-c
Confidence 458999999999999988875 468999999 669998887631 345555443322 1 2
Q ss_pred CCCccEEEEecC-CCCC---------C-----------hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 142 APPFDYIIGTDV-YAEH---------L-----------LEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~---------~-----------~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
..+||+|+++++ ++.. . +.+++.....+|+|+|.+++++..+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 468999999999 4411 0 3566677778899999998887543
No 129
>PRK04457 spermidine synthase; Provisional
Probab=99.18 E-value=1.8e-10 Score=94.73 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++++|||||||+|.++..+++. +.+|+++|+ +++++.++++...+.. ..++++...|..+. +..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----------~~rv~v~~~Da~~~--l~~ 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----------GERFEVIEADGAEY--IAV 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----------CCceEEEECCHHHH--HHh
Confidence 4578999999999999988865 457999999 7799999988765432 35788877554322 112
Q ss_pred cCCCccEEEEecCCCCC------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCe
Q 027659 141 VAPPFDYIIGTDVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 200 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~ 200 (220)
..++||+|+.. .|... ....+++.+.++|+|||++++-...+.. ....+++.++..|.
T Consensus 133 ~~~~yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 133 HRHSTDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CCCCCCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 24689999974 32211 2378999999999999999886544443 34666777777774
No 130
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.17 E-value=6.6e-10 Score=85.50 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=67.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
..+.+|||||||+|.++..+++.+.+|+++|. +.+++.+++|+..+ .++++...|..+.. ..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~ 74 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LP 74 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---cc
Confidence 35679999999999999999998889999999 56999998887531 36777776654432 22
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHh--hCCCcEEEE
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFAL--SGPKTTILL 178 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~--l~~~g~~~i 178 (220)
...||.|+++.+|+.. .+++..+... +.++|.+++
T Consensus 75 ~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 75 KLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred ccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEE
Confidence 3469999998777643 2333333322 234555544
No 131
>PRK06202 hypothetical protein; Provisional
Probab=99.17 E-value=2.8e-10 Score=91.91 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHh----C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
++.+|||||||+|.++..+++. | .+|+++|. +++++.++++...+ ++.+...+-..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~-- 122 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------------GVTFRQAVSDE-- 122 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------------CCeEEEEeccc--
Confidence 5678999999999999888753 3 48999999 67999988775433 23444333222
Q ss_pred CccccCCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 137 HIKAVAPPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
++..+++||+|+++.+ ++-.. ...+++.+.++++ |.+++..-.|.
T Consensus 123 -l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 123 -LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 2223578999999999 55443 4578888888887 55555554444
No 132
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.17 E-value=2.6e-10 Score=87.98 Aligned_cols=109 Identities=24% Similarity=0.368 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.+.|.++|||-+|+|.+|+.++.+|+. |+++|. .+++..+++|++.-+. ..++.+...|-... +.
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~--L~ 107 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRA--LK 107 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHH--HH
Confidence 478999999999999999999999985 999998 5699999999887664 34566666444311 11
Q ss_pred ccC--CCccEEEEecCCCCCChHHHHHHHH----HhhCCCcEEEEEEEec
Q 027659 140 AVA--PPFDYIIGTDVYAEHLLEPLLQTIF----ALSGPKTTILLGYEIR 183 (220)
Q Consensus 140 ~~~--~~fD~V~~~d~y~~~~~~~l~~~l~----~~l~~~g~~~i~~~~r 183 (220)
... +.||+|+.-|+|.....+.....+. .+|+|++.+++-+...
T Consensus 108 ~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 108 QLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred hcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 122 2599999988888777755444444 4589999999866544
No 133
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.16 E-value=2.9e-11 Score=95.06 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred CCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
=+++||||||||+.|..+-.+..+.+++|+++ |++.+.+.---..+-+. .-+. +... ..++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~A---------ea~~-----Fl~~----~~~e 187 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVA---------EAVL-----FLED----LTQE 187 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHH---------HHHH-----Hhhh----ccCC
Confidence 36899999999999999998888999999966 88877654222211100 0011 1111 1367
Q ss_pred CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------------hHHHHHHHHHh-cCCeEEEeeCCC
Q 027659 144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVPKAK 208 (220)
Q Consensus 144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------------~~~~~f~~~~~-~~f~v~~v~~~~ 208 (220)
+||+|.+.|| -....++.++-....+|+|||.+.++...-.. .........++ .+|++..+.+..
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 8999999999 44456899999999999999999988643221 11223334454 489888777665
Q ss_pred CCcc
Q 027659 209 ESTM 212 (220)
Q Consensus 209 ~~~~ 212 (220)
.+.+
T Consensus 268 iR~d 271 (287)
T COG4976 268 IRRD 271 (287)
T ss_pred chhh
Confidence 5433
No 134
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.7e-10 Score=84.86 Aligned_cols=146 Identities=18% Similarity=0.263 Sum_probs=100.5
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (220)
+.+|.+-|.+....- .....+-++|||||+|.++-.+++. + +-+.+||+ |++++..++.++.|..
T Consensus 25 TFlLlDaLekd~~eL----~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------- 93 (209)
T KOG3191|consen 25 TFLLLDALEKDAAEL----KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------- 93 (209)
T ss_pred hhHHHHHHHHHHHHH----hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------
Confidence 667777776543100 0112457999999999999999975 3 34889999 7899999999998865
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC----------------------hHHHHHHHHHhhCCCcE
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL----------------------LEPLLQTIFALSGPKTT 175 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~----------------------~~~l~~~l~~~l~~~g~ 175 (220)
++..+.-|.... + ..++.|+++-|++|-+.. .+.|+..+..+|+|.|.
T Consensus 94 ------~~~~V~tdl~~~--l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv 163 (209)
T KOG3191|consen 94 ------HIDVVRTDLLSG--L--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGV 163 (209)
T ss_pred ------ccceeehhHHhh--h--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCce
Confidence 455655443322 1 247899999998854321 45677777888999999
Q ss_pred EEEEEEecCchHHHHHHHHHh-cCCeEEEeeCCCCC
Q 027659 176 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKES 210 (220)
Q Consensus 176 ~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~~~~ 210 (220)
+|+..-.++.. ++..+.++ ++|.+...-+++..
T Consensus 164 ~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~~Rk~~ 197 (209)
T KOG3191|consen 164 FYLVALRANKP--KEILKILEKKGYGVRIAMQRKAG 197 (209)
T ss_pred EEeeehhhcCH--HHHHHHHhhcccceeEEEEEecC
Confidence 99988777663 55556554 47877666554443
No 135
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=1.4e-09 Score=87.03 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=103.1
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhh--hccCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSR--ISQMNP 117 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~--~~~~~~ 117 (220)
....|.+|+.+. ...++.+||..|||.|.-.+.+|.+|.+|+++|++ .+++.+.+ .|+.. +.+...
T Consensus 28 pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~ 96 (226)
T PRK13256 28 PNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGND 96 (226)
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccc
Confidence 467787887653 12256799999999999999999999999999995 58887644 12111 000000
Q ss_pred -CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-----h--
Q 027659 118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-----S-- 186 (220)
Q Consensus 118 -~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-----~-- 186 (220)
......++++.+.|+-+........++||+|+=..+ ..++.....++.+.++|+|||.+++..-.-.. .
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~ 176 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYS 176 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCc
Confidence 001235788888776554321123468999876555 66777889999999999999987655432111 0
Q ss_pred -HHHHHHHHHhcCCeEEEeeCC
Q 027659 187 -VHEQMLQMWKSNFNVKLVPKA 207 (220)
Q Consensus 187 -~~~~f~~~~~~~f~v~~v~~~ 207 (220)
..+...+.+...|+++.+...
T Consensus 177 v~~~e~~~lf~~~~~i~~l~~~ 198 (226)
T PRK13256 177 VTQAELIKNFSAKIKFELIDSK 198 (226)
T ss_pred CCHHHHHHhccCCceEEEeeec
Confidence 135556667788888887654
No 136
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=6.9e-10 Score=93.57 Aligned_cols=99 Identities=22% Similarity=0.196 Sum_probs=71.9
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..++.+|||+|||+|..++.+++.. ..|+++|. +++++.+++|++.++. .++.+...|....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~-- 143 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYG-- 143 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhc--
Confidence 3467899999999999999999764 25999998 6799999999988764 4677776543221
Q ss_pred ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
......||+|+++.. ...+...+.+.|+|||.+++..
T Consensus 144 -~~~~~~fD~Ii~~~g-----~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 -VPEFAPYDVIFVTVG-----VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -ccccCCccEEEECCc-----hHHhHHHHHHhcCCCCEEEEEe
Confidence 112357999997644 1223345667899999988754
No 137
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.15 E-value=3.9e-10 Score=96.65 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=82.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+..+||||||+|...+.+|+.. ..++|+|+ ++++..+.+++..+++ .++.+...|...... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~ 188 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LL 188 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hC
Confidence 45689999999999999999874 46999998 6799999999988775 478888866543211 12
Q ss_pred cCCCccEEEEecC--CCCCC-----hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 141 VAPPFDYIIGTDV--YAEHL-----LEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y~~~~-----~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
.++.+|.|+.+-+ +.... .+.+++.+.++|+|||.+.+....
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 4678999998766 33222 268999999999999999997654
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=2e-09 Score=84.18 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
...+|.+|||+|||+|.++..++... .+|+++|.+++. . ..++.+...|..+...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------------~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------------IENVDFIRGDFTDEEV 86 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------------CCCceEEEeeCCChhH
Confidence 34578899999999999999888653 369999985522 1 1246777767654321
Q ss_pred c-----cccCCCccEEEEecC-C----C-CC------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCe
Q 027659 138 I-----KAVAPPFDYIIGTDV-Y----A-EH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 200 (220)
Q Consensus 138 ~-----~~~~~~fD~V~~~d~-y----~-~~------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~ 200 (220)
. ....++||+|+++.. + + .. ....++..+.++|+|||.+++...... ....++..+++.|.
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFE 164 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhc
Confidence 1 013457999998643 2 1 11 136788889999999999998543322 23466666666664
Q ss_pred EEEe
Q 027659 201 VKLV 204 (220)
Q Consensus 201 v~~v 204 (220)
-..+
T Consensus 165 ~~~~ 168 (188)
T TIGR00438 165 KVKV 168 (188)
T ss_pred eEEE
Confidence 4333
No 139
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=3.7e-10 Score=87.60 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=80.2
Q ss_pred cEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceE-EEEeeeCCCCCcc-ccC
Q 027659 67 RVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIK-AVA 142 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~-~~~ldw~~~~~~~-~~~ 142 (220)
.|||+|||||..=-..- ..+.+||++|- +.|-+.+.+.++.|.. .++. ++.. ..++++ ..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvva---~ge~l~~l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVVA---DGENLPQLAD 143 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEee---chhcCccccc
Confidence 58999999996433332 34678999998 5599999998888743 4555 4543 333343 257
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
.++|+|++.-+ -...+....++.+.++|+|||++++..+.+..
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 89999999999 77888999999999999999999998887765
No 140
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.13 E-value=4.8e-10 Score=94.09 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.+.+|||||||+|..+..+++. +.+|+++|+ ++||+.+++++..... ..++...+.|..+.....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence 5678999999999999998876 568999999 5699999988765421 235666666655432221
Q ss_pred ccC-CCccEEEE-ecC-C--CCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 140 AVA-PPFDYIIG-TDV-Y--AEHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 140 ~~~-~~fD~V~~-~d~-y--~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
... ....+++. ..+ + .......+++.+.+.|+|||.+++......
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 111 11233333 333 3 344567889999999999999998765443
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=2.4e-09 Score=94.55 Aligned_cols=122 Identities=18% Similarity=0.104 Sum_probs=86.5
Q ss_pred cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (220)
Q Consensus 37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (220)
.+++.+..++..+. ...+|.+|||+|||+|..++.++.. +.+|+++|. +++++.+++|++.++.
T Consensus 233 ~vqd~~s~l~~~~l----------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-- 300 (445)
T PRK14904 233 SVQNPTQALACLLL----------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-- 300 (445)
T ss_pred EEeCHHHHHHHHhc----------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence 46655555554443 2346789999999999999888864 357999999 6699999999998765
Q ss_pred ccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHh
Q 027659 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFAL 169 (220)
Q Consensus 113 ~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~ 169 (220)
.++.+...|..... ....||.|+...+ -. ++ ....++..+.++
T Consensus 301 ----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36778776654432 2457999996433 11 00 123578888899
Q ss_pred hCCCcEEEEEEEecC
Q 027659 170 SGPKTTILLGYEIRS 184 (220)
Q Consensus 170 l~~~g~~~i~~~~r~ 184 (220)
|+|||.++++...-.
T Consensus 367 lkpgG~lvystcs~~ 381 (445)
T PRK14904 367 LKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCcEEEEEeCCCC
Confidence 999999998875544
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.12 E-value=2.1e-09 Score=94.44 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=87.0
Q ss_pred chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
.++..++..+. ..+|.+|||+|||+|..++.++.. + ++|+++|. +++++.+++|++.++.
T Consensus 225 ~~s~~~~~~L~-----------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~------ 287 (426)
T TIGR00563 225 ASAQWVATWLA-----------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL------ 287 (426)
T ss_pred HHHHHHHHHhC-----------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 45666666663 236789999999999999999875 3 58999998 6699999999998875
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHhhCCC
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFALSGPK 173 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~l~~~ 173 (220)
..++.....|....... ....+||.|++..+ -. ++ ....++....++|+||
T Consensus 288 -----~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 288 -----TIKAETKDGDGRGPSQW-AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred -----CeEEEEecccccccccc-ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11223333332211110 12467999997543 11 11 0256888888999999
Q ss_pred cEEEEEEEecC----chHHHHHHH
Q 027659 174 TTILLGYEIRS----TSVHEQMLQ 193 (220)
Q Consensus 174 g~~~i~~~~r~----~~~~~~f~~ 193 (220)
|.++++...-. ..+.+.|++
T Consensus 362 G~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 362 GTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cEEEEEeCCCChhhCHHHHHHHHH
Confidence 99988765443 223445554
No 143
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.12 E-value=9.5e-10 Score=90.98 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=67.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC-----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+.+|||+|||+|..+..+++.. ..|+++|+ +++++.++++. .++.+...|..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~--- 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHR--- 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeeccc---
Confidence 44689999999999999888652 36899999 56888876541 245666655433
Q ss_pred ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
++..++.||+|++... + ..++.+.++|+|||.++++.+.
T Consensus 145 lp~~~~sfD~I~~~~~--~----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 145 LPFADQSLDAIIRIYA--P----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CCCcCCceeEEEEecC--C----CCHHHHHhhccCCCEEEEEeCC
Confidence 3344678999997544 2 2346788899999999987654
No 144
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.11 E-value=3e-10 Score=95.48 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=58.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEE-eeeCCCC-C
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVE-LDWGNED-H 137 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~-ldw~~~~-~ 137 (220)
.+.++||||||+|.+...++.. +.+++++|+ +.+++.+++|++.| ++ ..+|.+.. .+-.+.. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence 4578999999999777777654 678999999 66999999999999 56 34666643 1111111 0
Q ss_pred ccccCCCccEEEEecCCCC
Q 027659 138 IKAVAPPFDYIIGTDVYAE 156 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~ 156 (220)
.....+.||+|+||++|+.
T Consensus 183 i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 183 IIHKNERFDATLCNPPFHA 201 (321)
T ss_pred ccccCCceEEEEeCCCCcC
Confidence 1113568999999999443
No 145
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=9e-10 Score=96.20 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=99.8
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
+..|.++..+.. ....+.++|||=||.|..|+.+|+...+|+++|+ +++++.+++|++.|+.
T Consensus 278 ~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i---------- 340 (432)
T COG2265 278 AEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI---------- 340 (432)
T ss_pred HHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC----------
Confidence 556666666553 3346678999999999999999999999999998 7899999999999987
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcC
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSN 198 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~ 198 (220)
.|+++...+-.+..........||.|+..++ =..+ +.+++.+.+ ++|..++|+++.. .++.+-+..+ ..+
T Consensus 341 --~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~~-~~p~~IvYVSCNP---~TlaRDl~~L~~~g 412 (432)
T COG2265 341 --DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLAK-LKPKRIVYVSCNP---ATLARDLAILASTG 412 (432)
T ss_pred --CcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHHh-cCCCcEEEEeCCH---HHHHHHHHHHHhCC
Confidence 4688888554443322222458999999998 3221 244454443 5678899998864 3445555555 457
Q ss_pred CeEEEee
Q 027659 199 FNVKLVP 205 (220)
Q Consensus 199 f~v~~v~ 205 (220)
++++++.
T Consensus 413 y~i~~v~ 419 (432)
T COG2265 413 YEIERVQ 419 (432)
T ss_pred eEEEEEE
Confidence 7777763
No 146
>PLN02476 O-methyltransferase
Probab=99.09 E-value=2.4e-09 Score=88.24 Aligned_cols=129 Identities=12% Similarity=0.204 Sum_probs=91.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~ 138 (220)
+.++|||||+|+|..++.+|.. +.+|+.+|. ++.++.+++|++.++. ..+|++...+..+.- .+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM 186 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5789999999999999999964 447999998 6799999999999987 457888875443321 01
Q ss_pred --cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch------------HHHHHHHHHhc--CCeEE
Q 027659 139 --KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS--NFNVK 202 (220)
Q Consensus 139 --~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~------------~~~~f~~~~~~--~f~v~ 202 (220)
....++||+|+.-. ....+..++..+.++|+|||.+++-....+.. ..+.|.+.+.. .|+..
T Consensus 187 ~~~~~~~~FD~VFIDa--~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ 264 (278)
T PLN02476 187 IQNGEGSSYDFAFVDA--DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSIS 264 (278)
T ss_pred HhcccCCCCCEEEECC--CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 01135899999543 35667888888899999999987653322221 14667666643 45555
Q ss_pred Eee
Q 027659 203 LVP 205 (220)
Q Consensus 203 ~v~ 205 (220)
.+|
T Consensus 265 llP 267 (278)
T PLN02476 265 MVP 267 (278)
T ss_pred EEE
Confidence 554
No 147
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.08 E-value=6.2e-10 Score=88.39 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=77.2
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CC--eEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
+++.+...+.+.. ...+|.+|||+|||+|..+..+|.+ |. +|+++|. ++.++.+++|+...+.
T Consensus 56 s~P~~~a~~l~~L-------~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------ 122 (209)
T PF01135_consen 56 SAPSMVARMLEAL-------DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------ 122 (209)
T ss_dssp --HHHHHHHHHHT-------TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------
T ss_pred hHHHHHHHHHHHH-------hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------
Confidence 4555555555553 4558899999999999999999986 43 5999997 6799999999998875
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.+|.+...|-.. ......+||.|+.+.... .+-..+.+.|++||++++...
T Consensus 123 ------~nv~~~~gdg~~---g~~~~apfD~I~v~~a~~-----~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 123 ------DNVEVVVGDGSE---GWPEEAPFDRIIVTAAVP-----EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ------HSEEEEES-GGG---TTGGG-SEEEEEESSBBS-----S--HHHHHTEEEEEEEEEEES
T ss_pred ------CceeEEEcchhh---ccccCCCcCEEEEeeccc-----hHHHHHHHhcCCCcEEEEEEc
Confidence 478888855322 112346899999876521 122445567899999888654
No 148
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.06 E-value=1e-09 Score=85.80 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=78.5
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.-.+|.|||||+|..+-.++++ ++.|+++|- ++|++.++.. ..++++...|.....
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----------------lp~~~f~~aDl~~w~---- 88 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----------------LPDATFEEADLRTWK---- 88 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----------------CCCCceecccHhhcC----
Confidence 4458999999999999999976 678999998 6799887543 246677765443332
Q ss_pred cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
+...+|++++|.+ .+-.++..++..+-..|.|||++-+-.+.
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 4568999999999 88888899999999999999998876654
No 149
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=1.2e-10 Score=94.59 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=98.9
Q ss_pred CCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHH-HHH
Q 027659 29 PNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLK-RNV 105 (220)
Q Consensus 29 ~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~-~n~ 105 (220)
|+....|.++|.++..|..++.... .+ .-.+.|++|||||||+|+.++.+...| .+|.+.|+ .+.++.-. .|+
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~ 160 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI 160 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence 3356789999999999999998663 00 245689999999999999999999988 46999998 45663222 233
Q ss_pred HHhhhhhccCCCCCCCCCceEEEEe---eeCCCCCccccCCCccEEEEecC-CCCCChHHH-HHHHHHhhCCCcEEEEEE
Q 027659 106 EWNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPL-LQTIFALSGPKTTILLGY 180 (220)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~v~~~~l---dw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l-~~~l~~~l~~~g~~~i~~ 180 (220)
..|.....+.. ....-.....- ||..... ..-+||+|+++.. |.....+.+ ..+...+++++|++|++.
T Consensus 161 ~~~~~~~~~~~---e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 161 LVNSHAGVEEK---ENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ecchhhhhhhh---hcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 22221100000 00001111111 5522110 0138999999999 999998888 777777889999999988
Q ss_pred EecCchH
Q 027659 181 EIRSTSV 187 (220)
Q Consensus 181 ~~r~~~~ 187 (220)
+.....+
T Consensus 235 K~~yFgV 241 (282)
T KOG2920|consen 235 KKLYFGV 241 (282)
T ss_pred HhhccCc
Confidence 7666543
No 150
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.04 E-value=6e-10 Score=88.21 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~ 138 (220)
+.++||||||++|.-++.+|.. +++|+.+|. ++..+.+++|++..+. ..+|++...|..+.-. +
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence 5679999999999999999964 568999998 6799999999999887 4688998855543211 1
Q ss_pred c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----------h--HHHHHHHHHhc--CCeEE
Q 027659 139 K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------S--VHEQMLQMWKS--NFNVK 202 (220)
Q Consensus 139 ~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----------~--~~~~f~~~~~~--~f~v~ 202 (220)
. ...++||+|+.- -....+...+..+.++|+|||.+++-...... . ....|.+.+.. .|+..
T Consensus 114 ~~~~~~~~fD~VFiD--a~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ 191 (205)
T PF01596_consen 114 ANDGEEGQFDFVFID--ADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETV 191 (205)
T ss_dssp HHTTTTTSEEEEEEE--STGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEE
T ss_pred HhccCCCceeEEEEc--ccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEE
Confidence 1 113589999954 34667788888888999999998875332221 1 13466666654 45555
Q ss_pred Eee
Q 027659 203 LVP 205 (220)
Q Consensus 203 ~v~ 205 (220)
.+|
T Consensus 192 llp 194 (205)
T PF01596_consen 192 LLP 194 (205)
T ss_dssp EEC
T ss_pred EEE
Confidence 444
No 151
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.03 E-value=2.6e-09 Score=84.83 Aligned_cols=128 Identities=17% Similarity=0.172 Sum_probs=93.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE-eeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~-ldw~~~~~~ 138 (220)
..++|||||+++|.-++.+|.. ..++|.+|. ++..+.+++|++..+. ..+|.... +|+.+.-..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR 127 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence 6789999999999999999964 247999998 6799999999999987 45577766 455443221
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----h--------H--HHHHHHHHhc--CCeEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----S--------V--HEQMLQMWKS--NFNVK 202 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----~--------~--~~~f~~~~~~--~f~v~ 202 (220)
...++||+|+.- .....++.++..+.++|+|||.+++-.-.... . + .+.|.+...+ .++..
T Consensus 128 -~~~~~fDliFID--adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 204 (219)
T COG4122 128 -LLDGSFDLVFID--ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTV 204 (219)
T ss_pred -ccCCCccEEEEe--CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeE
Confidence 246899999932 56777889999999999999998875433331 0 1 3556666544 46665
Q ss_pred Eee
Q 027659 203 LVP 205 (220)
Q Consensus 203 ~v~ 205 (220)
.+|
T Consensus 205 ~lP 207 (219)
T COG4122 205 LLP 207 (219)
T ss_pred EEe
Confidence 565
No 152
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.99 E-value=2.6e-09 Score=92.24 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=74.1
Q ss_pred CCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+.+|||++||+|..|+.+|.. ++ +|+++|. +++++.+++|++.|+. .++.+...|.... +..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~--l~~- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANAL--LHE- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHH--Hhh-
Confidence 458999999999999999875 43 7999998 6799999999999986 2455666544221 111
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.+.||+|+.. +| ....++++.....++++|.++++.
T Consensus 123 ~~~fD~V~lD-P~--Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 ERKFDVVDID-PF--GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred cCCCCEEEEC-CC--CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 3579999985 44 334677787666789999999983
No 153
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.99 E-value=5.8e-09 Score=81.81 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=84.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
...-|||||||+|+.|-.+...|...+++|+ +.||+.+.+. +.. -.+...|.|.. ++..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~e----------------gdlil~DMG~G--lpfrp 110 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELE----------------GDLILCDMGEG--LPFRP 110 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhh----------------cCeeeeecCCC--CCCCC
Confidence 5667999999999999999999988999999 6799988762 111 14455566643 55678
Q ss_pred CCccEEEEecC--C--------CCC--ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH-HHhcCC
Q 027659 143 PPFDYIIGTDV--Y--------AEH--LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWKSNF 199 (220)
Q Consensus 143 ~~fD~V~~~d~--y--------~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~-~~~~~f 199 (220)
+.||-+|+-.. + +.. -+..++.++..+|++++.+++-+...+.+..+...+ ..+.+|
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 89998876432 2 211 134578889999999999999887777655444443 445665
No 154
>PRK00811 spermidine synthase; Provisional
Probab=98.95 E-value=1.1e-08 Score=85.23 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=83.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+.++||+||||.|..+..+++. + .+|+++|+ +++++.++++........ ....++++...|.... +..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~--l~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKF--VAE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHH--Hhh
Confidence 4578999999999999988876 4 36999999 669999998875432100 0135777777554322 112
Q ss_pred cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCe
Q 027659 141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN 200 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~ 200 (220)
..++||+|++.-. +... ....+++.+++.|+|||++++-... ..........+.+++.|.
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP 213 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence 3568999998533 3222 1367888999999999998764321 122234444555555553
No 155
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.95 E-value=2.6e-08 Score=85.29 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=98.0
Q ss_pred ecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hh
Q 027659 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE 96 (220)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~ 96 (220)
+.+..+.++..++++.- .-+.....|.+++.+.. ...++ ++|||-||+|..|+.+|....+|+++|. ++
T Consensus 160 ~~~~~~~~~~~~~sFfQ--vN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~ 229 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFFQ--VNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE 229 (352)
T ss_dssp ECCCTEEEEEETTS-----SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred eeccceEEEECCCcCcc--CcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence 44445666666654432 23345667777776653 22233 7999999999999999999999999998 67
Q ss_pred hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC----------cc---ccCCCccEEEEecC-CCCCChHHH
Q 027659 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH----------IK---AVAPPFDYIIGTDV-YAEHLLEPL 162 (220)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~----------~~---~~~~~fD~V~~~d~-y~~~~~~~l 162 (220)
+++.|++|++.|+. .++++...+-.+... .. .....+|+|+.-|+ =... +.+
T Consensus 230 av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~ 295 (352)
T PF05958_consen 230 AVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKV 295 (352)
T ss_dssp HHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHH
T ss_pred HHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHH
Confidence 99999999999997 578888754432211 00 11236899999888 3322 345
Q ss_pred HHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCCC
Q 027659 163 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 208 (220)
Q Consensus 163 ~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~~ 208 (220)
++.+.+ ..-++|+++...+-. +. +..+.++|+++.+.--+
T Consensus 296 ~~~~~~---~~~ivYvSCnP~tla--RD-l~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 296 IELIKK---LKRIVYVSCNPATLA--RD-LKILKEGYKLEKVQPVD 335 (352)
T ss_dssp HHHHHH---SSEEEEEES-HHHHH--HH-HHHHHCCEEEEEEEEE-
T ss_pred HHHHhc---CCeEEEEECCHHHHH--HH-HHHHhhcCEEEEEEEee
Confidence 555443 457888888764432 22 33445689888774333
No 156
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.3e-08 Score=79.40 Aligned_cols=116 Identities=15% Similarity=0.053 Sum_probs=86.1
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHH-hCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMAL-LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~-~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
....|.+|||.|.|+|.++.++|. .|. +|+..|+ ++..+.|++|++..++ .+++.....|..+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEeccccccc
Confidence 456899999999999999999996 454 6999998 7799999999999876 344777775554433
Q ss_pred CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659 137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 197 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~ 197 (220)
..+.||.|+.- ..+....+..+..+|+|||.+.+-.+.-.+ .++-.+.+++
T Consensus 160 ----~~~~vDav~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQ--v~kt~~~l~~ 210 (256)
T COG2519 160 ----DEEDVDAVFLD----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQ--VEKTVEALRE 210 (256)
T ss_pred ----cccccCEEEEc----CCChHHHHHHHHHHhCCCcEEEEEcCCHHH--HHHHHHHHHh
Confidence 23489999854 345678899999999999988776554322 2334444443
No 157
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.93 E-value=1.8e-08 Score=82.83 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=60.4
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++++.. . .++++...|..+..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~------------~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A------------GNVEIIEGDALKVD---- 88 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C------------CCEEEEEeccccCC----
Confidence 346789999999999999999999889999999 5699999887643 1 36788887665432
Q ss_pred cCCCccEEEEecCCCCC
Q 027659 141 VAPPFDYIIGTDVYAEH 157 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~ 157 (220)
...||.|++|.+|+..
T Consensus 89 -~~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 89 -LPEFNKVVSNLPYQIS 104 (258)
T ss_pred -chhceEEEEcCCcccC
Confidence 2358999999886543
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=1.5e-08 Score=84.52 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++++..++. ..++++...|+....
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~---- 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE---- 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc----
Confidence 346779999999999999999998889999999 5699999999876543 357888887665432
Q ss_pred cCCCccEEEEecCCCCC
Q 027659 141 VAPPFDYIIGTDVYAEH 157 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~ 157 (220)
...||.|++|.+|+..
T Consensus 99 -~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -FPYFDVCVANVPYQIS 114 (294)
T ss_pred -ccccCEEEecCCcccC
Confidence 2468999998886655
No 159
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=5.3e-09 Score=83.08 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=82.2
Q ss_pred cEEEeCCcccHHHHHHHHhC----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cccc
Q 027659 67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~ 140 (220)
+|||+|||.|-...-+.+-. -+|.+.|. |.+++..+.|...+.. ++.....|...+. ..+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-------------~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-------------RVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-------------hhcccceeccchhccCCC
Confidence 79999999999888887653 36999998 6799999998776643 4555555555444 2233
Q ss_pred cCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 141 VAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 141 ~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
..+.+|+|++--+ -+++.....++.+.++|+|||.+++....|..-
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 4678999987666 567788999999999999999999987666553
No 160
>PRK04148 hypothetical protein; Provisional
Probab=98.91 E-value=1.4e-08 Score=74.52 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=60.3
Q ss_pred HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCC
Q 027659 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (220)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (220)
.+++||.++. ...+++++||+|||+|. ++..+++.|.+|+++|. +++++.++.+ +
T Consensus 3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------ 59 (134)
T PRK04148 3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------ 59 (134)
T ss_pred HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence 3677877764 23366899999999996 99999999999999999 5577666544 2
Q ss_pred CCceEEEEeeeCCCCCccccCCCccEEEEecC
Q 027659 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV 153 (220)
Q Consensus 122 ~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~ 153 (220)
+.+...|+.++... .-+.+|+|.+.-+
T Consensus 60 ---~~~v~dDlf~p~~~--~y~~a~liysirp 86 (134)
T PRK04148 60 ---LNAFVDDLFNPNLE--IYKNAKLIYSIRP 86 (134)
T ss_pred ---CeEEECcCCCCCHH--HHhcCCEEEEeCC
Confidence 36777777655321 2467899988766
No 161
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=1.8e-08 Score=83.38 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=59.5
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++.. .++++...|+.+.. .
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~-~-- 101 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVD-L-- 101 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCC-H--
Confidence 346779999999999999999998889999999 6699998876532 36788887776542 1
Q ss_pred cCCCccEEEEecCCCCC
Q 027659 141 VAPPFDYIIGTDVYAEH 157 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~ 157 (220)
....++.|++|.+|+..
T Consensus 102 ~~~~~~~vv~NlPY~is 118 (272)
T PRK00274 102 SELQPLKVVANLPYNIT 118 (272)
T ss_pred HHcCcceEEEeCCccch
Confidence 11116899999886654
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.90 E-value=7.6e-09 Score=82.76 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=100.5
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHH-HHHHHhhhhhccCCC-
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLK-RNVEWNTSRISQMNP- 117 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~-~n~~~n~~~~~~~~~- 117 (220)
.++.|.+|+.+. ....+.+||..|||.|.-.+.+|..|.+|+++|++ .+++.+. +|-...... ....
T Consensus 22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~--~~~~~ 91 (218)
T PF05724_consen 22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVT--SVGGF 91 (218)
T ss_dssp STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECT--TCTTE
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcc--cccce
Confidence 378899998863 23356799999999999999999999999999995 5888763 222111100 0000
Q ss_pred CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEE-EEEec-----Cch--
Q 027659 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILL-GYEIR-----STS-- 186 (220)
Q Consensus 118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i-~~~~r-----~~~-- 186 (220)
......+|++.+.|.-+... ...++||+|+=..+ -.++..+..++.+.++|+|+|.+++ +..-. .+.
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp EEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred eeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 00124567888855544221 12258999987665 5677889999999999999999443 32211 111
Q ss_pred -HHHHHHHHHhcCCeEEEeeCC
Q 027659 187 -VHEQMLQMWKSNFNVKLVPKA 207 (220)
Q Consensus 187 -~~~~f~~~~~~~f~v~~v~~~ 207 (220)
..+...+.+..+|+++.+...
T Consensus 170 v~~~ev~~l~~~~f~i~~l~~~ 191 (218)
T PF05724_consen 170 VTEEEVRELFGPGFEIEELEEE 191 (218)
T ss_dssp --HHHHHHHHTTTEEEEEEEEE
T ss_pred CCHHHHHHHhcCCcEEEEEecc
Confidence 145666777889998877643
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.90 E-value=5.5e-09 Score=83.96 Aligned_cols=113 Identities=18% Similarity=0.102 Sum_probs=72.8
Q ss_pred cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHH-HHHHHHHhhhhhc
Q 027659 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS 113 (220)
Q Consensus 37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~-~~~n~~~n~~~~~ 113 (220)
.+++++.-|...+... +...++++|||+|||||.++..+++.|+ +|+++|. +.++.. ++.+.+.-..
T Consensus 55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~--- 124 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL--- 124 (228)
T ss_pred hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe---
Confidence 5678888999888765 2456899999999999999999999987 5999998 445543 3333210000
Q ss_pred cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
...+++ .++|.+.. . .-..+|+++++-. .++..+..+|++ |.+++-
T Consensus 125 -------~~~ni~--~~~~~~~~--~-d~~~~DvsfiS~~-------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 125 -------ERTNIR--YVTPADIF--P-DFATFDVSFISLI-------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred -------ecCCcc--cCCHhHcC--C-CceeeeEEEeehH-------hHHHHHHHHhCc-CeEEEE
Confidence 012333 44454432 1 1236777776633 357777888888 665544
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.90 E-value=5.5e-09 Score=82.28 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=69.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.+|..|+|+.||.|..++.+|+ .+..|++.|. |++++.+++|++.|++ ..++.....|..+...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~-- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP-- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC--
Confidence 3678999999999999999998 5667999999 7899999999999987 4678888876654421
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
...||.|+.+.+ .. ..++.....+++++|.+.
T Consensus 167 --~~~~drvim~lp~~~----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLPESS----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSSG----GGGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECChHHH----HHHHHHHHHHhcCCcEEE
Confidence 678999999887 33 346666777788887653
No 165
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.89 E-value=6.3e-09 Score=80.51 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=66.2
Q ss_pred CCCcEEEeCCcccHHHHHHHH-hCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+|.+|||||||.|.+-..+.. ++.+.+++|++ +.+..+. .++ +.+.+.|..+.- ...+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG---------------v~Viq~Dld~gL-~~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG---------------VSVIQGDLDEGL-ADFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC---------------CCEEECCHHHhH-hhCC
Confidence 578999999999988877775 67889999984 4333222 223 466776665431 2246
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
+++||+||.+.+ -.....+.+++.+ |+-|..+++++++
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPN 111 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEM---LRVGRRAIVSFPN 111 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHH---HHhcCeEEEEecC
Confidence 789999999999 6656667776655 4556677777653
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.87 E-value=2.3e-08 Score=81.18 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=76.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
..++|||||+|.|..+..+++. +.+++..|.|++++.+++ . .+|++...|+-+. .
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~------~------------~rv~~~~gd~f~~-----~ 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE------A------------DRVEFVPGDFFDP-----L 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH------T------------TTEEEEES-TTTC-----C
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc------c------------cccccccccHHhh-----h
Confidence 4568999999999999999976 457999999998888877 1 4899999777622 2
Q ss_pred CCCccEEEEecC---CCCCChHHHHHHHHHhhCCC--cEEEEEEEecC
Q 027659 142 APPFDYIIGTDV---YAEHLLEPLLQTIFALSGPK--TTILLGYEIRS 184 (220)
Q Consensus 142 ~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~--g~~~i~~~~r~ 184 (220)
+. +|+|+.+.+ |.++....+++.+...|+|| |+++|......
T Consensus 157 P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 34 999999999 45566788999999999988 99999987643
No 167
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.87 E-value=3.4e-08 Score=81.69 Aligned_cols=107 Identities=13% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++||+||||+|..+..+++.. .+|+++|+ +++++.++++....... -...++++...|.... +..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--------~~~~~v~i~~~D~~~~--l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--------YDDPRVDLQIDDGFKF--LAD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--------ccCCceEEEECchHHH--HHh
Confidence 34699999999999888887764 46999999 56999999887543210 0123566655332111 111
Q ss_pred cCCCccEEEEecC--CCCC-C--hHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDV--YAEH-L--LEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y~~~-~--~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..++||+|++... .... . ...+++.+.++|+|||.+++..
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 2568999998655 2211 1 4678889999999999988753
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=5.5e-08 Score=81.67 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=96.7
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
.+.||+.+..- ....+|..|||=-||||-.-+.+...|++|+++|+. .|++-++.|++..+.
T Consensus 182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i---------- 244 (347)
T COG1041 182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI---------- 244 (347)
T ss_pred CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc----------
Confidence 45666666543 245588899999999999999999999999999995 599999999998764
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC----------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHH
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQ 190 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~----------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~ 190 (220)
....+ +...+...++.....+|.|++-++|..+. +..++.++.++|++||.+.++.+.. .
T Consensus 245 --~~~~~--~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~------~ 314 (347)
T COG1041 245 --EDYPV--LKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD------P 314 (347)
T ss_pred --CceeE--EEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc------c
Confidence 12222 22223333443445699998877776443 6778888899999999999988721 2
Q ss_pred HHHHHhcCCeEEEe
Q 027659 191 MLQMWKSNFNVKLV 204 (220)
Q Consensus 191 f~~~~~~~f~v~~v 204 (220)
+.+..+.+|++...
T Consensus 315 ~~~~~~~~f~v~~~ 328 (347)
T COG1041 315 RHELEELGFKVLGR 328 (347)
T ss_pred hhhHhhcCceEEEE
Confidence 22334557777543
No 169
>PRK03612 spermidine synthase; Provisional
Probab=98.86 E-value=2.6e-08 Score=89.55 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=85.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+.++|||||||+|..+..+++.+ .+|+++|+ +++++.+++|...+..... .-..+++++...|-.+. ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence 46789999999999999988775 47999999 6799999986432221000 00134677777543321 112
Q ss_pred cCCCccEEEEecC-CCCC-----ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhc-CCeEE
Q 027659 141 VAPPFDYIIGTDV-YAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNVK 202 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~-----~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~-~f~v~ 202 (220)
..++||+|+++.. .... .-.++.+.++++|+|||.+++.... ...+.+....+.+++ +|.+.
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 3468999999755 2211 1246888999999999998875321 122334555666665 48443
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=1.2e-08 Score=89.66 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=72.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
+++.|||+|||+|.++..+++.+ .+|++++- +.++..+++.+..|+. .++|++...|..+..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC
Confidence 46889999999999999888775 36999998 4577777777778876 578999996555443
Q ss_pred CccccCCCccEEEEecC-C--CCCChHHHHHHHHHhhCCCcEEE
Q 027659 137 HIKAVAPPFDYIIGTDV-Y--AEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~-y--~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
.+.+.|+||+--+ + ..+..+..+....+.|+|+|+++
T Consensus 255 ----lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 ----LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ----CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3569999999877 3 23467778888899999998665
No 171
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.85 E-value=1.4e-08 Score=87.40 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=76.7
Q ss_pred CCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+.+|||+.||+|..|+.++.. |+ +|++.|. +++++.+++|++.|+. .++.+...|..... ..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~ 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RY 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HH
Confidence 358999999999999999986 55 5999998 7799999999999975 35666665443321 11
Q ss_pred cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
...+||+|.. |+|. ...++++.+.+.++++|.++++.
T Consensus 111 ~~~~fDvIdl-DPfG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 111 RNRKFHVIDI-DPFG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred hCCCCCEEEe-CCCC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 2357999987 5553 34578888888899999999985
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.85 E-value=1.9e-08 Score=81.77 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=78.1
Q ss_pred CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~ 138 (220)
+.++|||||+++|.-++.+|.. +.+|+.+|. ++..+.++.|++..+. ..+|++...+..+.-. +
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM 147 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence 5579999999999999999864 458999998 6688999999998876 4688888755433211 1
Q ss_pred cc---cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 139 KA---VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 139 ~~---~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
.. ..++||+|+.- .+...+...+..+.++|+|||.+++-
T Consensus 148 ~~~~~~~~~fD~iFiD--adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 148 IEDGKYHGTFDFIFVD--ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HhccccCCcccEEEec--CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 00 13689999943 44666778888888999999997754
No 173
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.81 E-value=7.6e-09 Score=82.19 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=66.1
Q ss_pred cEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f 145 (220)
.++|+|||+|..++.+|..--+|++||. +.||+.+++.-...-. ....+... .+...+...+++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----------~t~~~ms~---~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----------HTPSTMSS---DEMVDLLGGEESV 101 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc-----------cCCccccc---cccccccCCCcce
Confidence 7999999999999999988667999998 5589877653221111 00011110 0111222236899
Q ss_pred cEEEEecCCCCCChHHHHHHHHHhhCCCc-EEEE
Q 027659 146 DYIIGTDVYAEHLLEPLLQTIFALSGPKT-TILL 178 (220)
Q Consensus 146 D~V~~~d~y~~~~~~~l~~~l~~~l~~~g-~~~i 178 (220)
|+|+++.+.|.-+++.+.+.+.++|++.| .+.+
T Consensus 102 DlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 99999999444558999999999998766 4433
No 174
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.81 E-value=3.3e-08 Score=77.72 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.+.+|||+|||+|..+..++.. +..++++|. +++++.++. + ++++...|..+.. .+..
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l-~~~~ 72 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGL-EAFP 72 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhcc-cccC
Confidence 5678999999999999888754 557899998 557766542 1 2455555543311 1123
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhC
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSG 171 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~ 171 (220)
+++||+|+++.+ ++......+++.+.+.++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 568999999999 777777777777766554
No 175
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=5.3e-08 Score=77.47 Aligned_cols=120 Identities=15% Similarity=0.352 Sum_probs=78.0
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecch-hhHHHHHHHHHHhhhhhccCC------------CCC------
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMN------------PGS------ 119 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~------------~~~------ 119 (220)
..+.++.+||+||-+|.+++.+|+ .|++ |+++|++ ..+..|+.|++--........ |.+
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 566889999999999999999997 5775 9999995 588999998875322110000 000
Q ss_pred -----CCCCceEEEEeee--CCCCCccccCCCccEEEEecC-------CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 120 -----DLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDV-------YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 120 -----~~~~~v~~~~ldw--~~~~~~~~~~~~fD~V~~~d~-------y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.-..++.+..... ...+-+......||+|+|-.+ ++++-+..+++.+.++|.|||++++--
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0011111111000 000001224578999999876 235558899999999999999998853
No 176
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.75 E-value=1.9e-07 Score=75.79 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=82.1
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
+...|.+|||-|.|+|.++.++++. | .+|+..|. ++..+.+++|++.+++ ..++.+...|.....
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDVCEEG 105 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-GGCG-
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecceeccc
Confidence 5568999999999999999999964 4 37999998 6799999999999987 568999987775422
Q ss_pred CccccCCCccEEEEecCCCCCChHHHHHHHHHhh-CCCcEEEEEEEecCchHHHHHHHHHhc-CC
Q 027659 137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALS-GPKTTILLGYEIRSTSVHEQMLQMWKS-NF 199 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l-~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f 199 (220)
........+|.|+.--+ ..-..+..+.+.| ++||.+.+-.+.-.. .....+.+++ +|
T Consensus 106 ~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ--v~~~~~~L~~~gf 164 (247)
T PF08704_consen 106 FDEELESDFDAVFLDLP----DPWEAIPHAKRALKKPGGRICCFSPCIEQ--VQKTVEALREHGF 164 (247)
T ss_dssp -STT-TTSEEEEEEESS----SGGGGHHHHHHHE-EEEEEEEEEESSHHH--HHHHHHHHHHTTE
T ss_pred ccccccCcccEEEEeCC----CHHHHHHHHHHHHhcCCceEEEECCCHHH--HHHHHHHHHHCCC
Confidence 11112468999986543 3445667778888 788887765543222 3444555543 65
No 177
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.72 E-value=1e-07 Score=74.07 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=71.1
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCe-----------EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL 130 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~-----------v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~l 130 (220)
.++..+||--||+|.+.+.+|..+.. +++.|+ +++++.++.|++..+. ...+.+...
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~ 95 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQW 95 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEec
Confidence 36779999999999999999876443 679998 6799999999998776 356777776
Q ss_pred eeCCCCCccccCCCccEEEEecCCCCC---------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 131 DWGNEDHIKAVAPPFDYIIGTDVYAEH---------LLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 131 dw~~~~~~~~~~~~fD~V~~~d~y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
|..+. +...+.+|+|+++++|... .+..+++.+.+.+++ ..+++...
T Consensus 96 D~~~l---~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 96 DAREL---PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp -GGGG---GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred chhhc---ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 55443 3345789999999996543 245567777777888 44444443
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.70 E-value=1.2e-07 Score=73.87 Aligned_cols=119 Identities=22% Similarity=0.338 Sum_probs=80.0
Q ss_pred cEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 67 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
+++|+|+|.|++|+.+|-.- .+++.+|- ..=+..++.-+..-++ .++++......+ .....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~----~~~~~ 114 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------------SNVEVINGRAEE----PEYRE 114 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------------CCEEEEEeeecc----cccCC
Confidence 79999999999999999764 46999996 4455666666665555 468888855544 22467
Q ss_pred CccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-hHHHHHHHHHhc-CCeEEEee
Q 027659 144 PFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKS-NFNVKLVP 205 (220)
Q Consensus 144 ~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-~~~~~f~~~~~~-~f~v~~v~ 205 (220)
.||+|++-.+ ..+..++..+..+++++|.+++ ++.+.. +-.+.....++. +.+...++
T Consensus 115 ~fd~v~aRAv---~~l~~l~~~~~~~l~~~G~~l~-~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 115 SFDVVTARAV---APLDKLLELARPLLKPGGRLLA-YKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp -EEEEEEESS---SSHHHHHHHHGGGEEEEEEEEE-EESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred CccEEEeehh---cCHHHHHHHHHHhcCCCCEEEE-EcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 9999999887 5578899999999999998765 443332 222333344443 45555444
No 179
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.67 E-value=2.1e-07 Score=75.21 Aligned_cols=94 Identities=24% Similarity=0.201 Sum_probs=72.0
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.+..++||||+|.|-++..++..-.+|++|+.+. |...+++ -+. + .....+|.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~-------------~-vl~~~~w~~~------ 148 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF-------------T-VLDIDDWQQT------ 148 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC-------------e-EEehhhhhcc------
Confidence 3567899999999999999999888899999854 5444432 221 1 2233446532
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
+.+||+|.|-.+ =....+..|++.+++.|+|+|.++++.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 468999999998 556678899999999999999999884
No 180
>PRK01581 speE spermidine synthase; Validated
Probab=98.67 E-value=2.7e-07 Score=78.48 Aligned_cols=106 Identities=20% Similarity=0.125 Sum_probs=71.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHH---HhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..++||+||||+|.....+++.. .+|+++|+ +++++.++..-. .|... -...++++...|..+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--------~~DpRV~vvi~Da~~f-- 219 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--------FFDNRVNVHVCDAKEF-- 219 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--------CCCCceEEEECcHHHH--
Confidence 45699999999999888777764 47999999 669999986211 11110 0135777777554332
Q ss_pred ccccCCCccEEEEecC-CCCC----C-hHHHHHHHHHhhCCCcEEEEE
Q 027659 138 IKAVAPPFDYIIGTDV-YAEH----L-LEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~-y~~~----~-~~~l~~~l~~~l~~~g~~~i~ 179 (220)
+....++||+|++.-+ -... . -..+++.+.+.|+|||++++-
T Consensus 220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1223568999997643 2111 1 267889999999999997764
No 181
>PLN02366 spermidine synthase
Probab=98.67 E-value=3e-07 Score=77.20 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=82.9
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++||+||||.|.....+++.. .+|+++|+ +++++.+++........ -...++++...|-...-. ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~ 161 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA 161 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence 46799999999999999888763 36999999 56999999877542110 013578888755322111 01
Q ss_pred cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEE--ecCchHHHHHHHHHhcCC
Q 027659 141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF 199 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~--~r~~~~~~~f~~~~~~~f 199 (220)
..++||+|++.-. .... .-..+++.+.++|+|+|++++-.. ......+..+.+.+++.|
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 2468999997432 2111 135788999999999999865221 222334556666677667
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.66 E-value=2.4e-07 Score=75.82 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++.+|||+|||+|.++..+++.+.+|+++|. +++++.++.+... ..++.+...|.....
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~---- 88 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--------------YERLEVIEGDALKVD---- 88 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--------------CCcEEEEECchhcCC----
Confidence 346789999999999999999999888999998 5688888876532 136777776654432
Q ss_pred cCCCcc---EEEEecCCCC
Q 027659 141 VAPPFD---YIIGTDVYAE 156 (220)
Q Consensus 141 ~~~~fD---~V~~~d~y~~ 156 (220)
...|| +|+++.+|+.
T Consensus 89 -~~~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 89 -LPDFPKQLKVVSNLPYNI 106 (253)
T ss_pred -hhHcCCcceEEEcCChhh
Confidence 11455 8888877654
No 183
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=4.5e-08 Score=74.42 Aligned_cols=76 Identities=21% Similarity=0.067 Sum_probs=55.4
Q ss_pred cEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f 145 (220)
.|+|+.||.|-.++.+|+.+.+|+++|+ +.-++.++.|++..+. ..+|.+...||.+..........|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~ 70 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIF 70 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccc
Confidence 6999999999999999999999999999 6799999999999986 468999999987643221112228
Q ss_pred cEEEEecC
Q 027659 146 DYIIGTDV 153 (220)
Q Consensus 146 D~V~~~d~ 153 (220)
|+|+++|+
T Consensus 71 D~vFlSPP 78 (163)
T PF09445_consen 71 DVVFLSPP 78 (163)
T ss_dssp SEEEE---
T ss_pred cEEEECCC
Confidence 99999997
No 184
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.63 E-value=2e-07 Score=73.44 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=83.9
Q ss_pred CcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
..+||||||.|-..+.+|.... .++|+|. ...+..+.+.+...++ .|+.+...|....-..-..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------------~Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------------KNVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------------SSEEEEES-CTTHHHHHSTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------------cceEEEEccHHHHHhhcccC
Confidence 3899999999999999998754 5999998 6678877777777665 68999886654422111235
Q ss_pred CCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc---CCeEE
Q 027659 143 PPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS---NFNVK 202 (220)
Q Consensus 143 ~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~---~f~v~ 202 (220)
+.+|-|..+=+ +... .-+.++..+.++|+|||.+++..... ...+..++.+.+ .|+..
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~--~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE--EYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H--HHHHHHHHHHHHHSTTEEEE
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhcCcCeEEc
Confidence 78998877665 4332 24789999999999999999865442 234444555544 45544
No 185
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=3.5e-07 Score=72.55 Aligned_cols=126 Identities=16% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
+++++|||+|.|++|+.+|-. ..+|+.+|- ..=+..++.-...-++ .|+++......+...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------------~nv~i~~~RaE~~~~---- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------------ENVEIVHGRAEEFGQ---- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------------CCeEEehhhHhhccc----
Confidence 689999999999999999854 345999996 4455566655555544 467887744433321
Q ss_pred CCC-ccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCCC
Q 027659 142 APP-FDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 209 (220)
Q Consensus 142 ~~~-fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~~ 209 (220)
..+ ||+|++-.+ ..+..++..+..++++||.++...-....+.....-..+ ..++.++.+.....
T Consensus 132 ~~~~~D~vtsRAv---a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~ 198 (215)
T COG0357 132 EKKQYDVVTSRAV---ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTV 198 (215)
T ss_pred ccccCcEEEeehc---cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeec
Confidence 123 999999887 557788899999999988865433222233333443333 34677766654433
No 186
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.56 E-value=2.9e-06 Score=79.01 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=95.8
Q ss_pred eEEEeecCeEEEEEeCCCCccc---ccc----ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh
Q 027659 13 VINLEVLGHQLQFSQDPNSKHL---GTT----VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (220)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~---g~~----~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~ 85 (220)
.+.+.+.....++.-+.++... |.+ .-|-...||.-|..... ....+..++|-+||+|.+.+.+|..
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~------w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSG------WPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcC------CCCCCCeEEccCCCccHHHHHHHHH
Confidence 3455566666777666543322 111 22234466665554321 1124678999999999999998863
Q ss_pred C--------------------------------------------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
+ .+++++|+ +++++.++.|+..++.
T Consensus 212 ~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~---------- 281 (702)
T PRK11783 212 AADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV---------- 281 (702)
T ss_pred HhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 1 25899998 6799999999999987
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC-----hHHHHHHHHHhhC---CCcEEEEEEE
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL-----LEPLLQTIFALSG---PKTTILLGYE 181 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~-----~~~l~~~l~~~l~---~~g~~~i~~~ 181 (220)
...+.+...|+.+.... ...+.||+|++|++|.... ...+-+.+...++ +|+.+++...
T Consensus 282 -~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 282 -AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45688888777654321 1235799999999965432 2333333333333 7777776554
No 187
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=7.7e-07 Score=75.23 Aligned_cols=104 Identities=21% Similarity=0.155 Sum_probs=78.5
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
.|.+|||+-||.|..++.+|+.|+. |+++|+ |++++.+++|+++|+. ...+.....|-.... ..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~---~~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVA---PE 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhh---hc
Confidence 5889999999999999999999986 999999 7899999999999988 345777775544332 12
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
...||-|+.+-+ .. ..++....++++++|.+.+-...+..
T Consensus 254 ~~~aDrIim~~p~~a----~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 254 LGVADRIIMGLPKSA----HEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred cccCCEEEeCCCCcc----hhhHHHHHHHhhcCcEEEEEeccchh
Confidence 268999998877 33 34445555567778877664444443
No 188
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=8.2e-07 Score=77.68 Aligned_cols=125 Identities=12% Similarity=0.103 Sum_probs=94.8
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (220)
++.+|-.++.++. ....++.+||+-||||+.|+++|+.-.+|+++++ +++++-|+.|+..|+.
T Consensus 367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--------- 430 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI--------- 430 (534)
T ss_pred HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc---------
Confidence 5788888888874 4556789999999999999999998889999998 7899999999999997
Q ss_pred CCCCceEEEEeeeCCCCC-cc-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 120 DLLGSIQAVELDWGNEDH-IK-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 120 ~~~~~v~~~~ldw~~~~~-~~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
.|+++++..-.+.-. +. .....-++|...|+-.......+++.+...-++.-.+|+++..+.
T Consensus 431 ---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 431 ---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred ---cceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 578888842222211 10 111244566666663345567888888888889999999988765
No 189
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.51 E-value=1.2e-06 Score=68.79 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=72.1
Q ss_pred cEEEeCCcccHHHHHHHHhCCe--EEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-----Cc
Q 027659 67 RVIELGAGCGVAGFGMALLGCN--VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-----HI 138 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~--v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-----~~ 138 (220)
+|||||||||--+..+|+.-.. -.-+|.+ +.+..++..+...+..+ -.....+|..... ..
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N-----------v~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN-----------VRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc-----------cCCCeEeecCCCCCcccccc
Confidence 6999999999999999987544 5578984 46677777776655421 1122234433331 11
Q ss_pred cccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 139 KAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
+.....||.|++..+ +- .+..+.|++...++|++||.+++-.+-
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 123568999999988 43 345688999999999999998876543
No 190
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.51 E-value=7.5e-06 Score=65.66 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=92.4
Q ss_pred ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecchh-hHHHHHHHHHHh
Q 027659 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN 108 (220)
Q Consensus 32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~-~l~~~~~n~~~n 108 (220)
..-+...++++..=+.|+.++ ..+.|++||=||=+ =+.|+++|.. ..+|+.+|+.+ .++.+++.++..
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 445667778888888899877 67899999999955 4777877754 45799999965 999999999988
Q ss_pred hhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCC-CcEEEEEEEecCch-
Q 027659 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGP-KTTILLGYEIRSTS- 186 (220)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~-~g~~~i~~~~r~~~- 186 (220)
+. +|++...|..++-+. ...++||+++..|+|-.+-+..++.-..+.|+. |+..|+++..+...
T Consensus 91 gl-------------~i~~~~~DlR~~LP~-~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 91 GL-------------PIEAVHYDLRDPLPE-ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp T---------------EEEE---TTS---T-TTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred CC-------------ceEEEEecccccCCH-HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence 76 488888777665321 235799999988888888888888888888875 45888988877632
Q ss_pred -HHHHHHHHH-hcCCeEEEe
Q 027659 187 -VHEQMLQMW-KSNFNVKLV 204 (220)
Q Consensus 187 -~~~~f~~~~-~~~f~v~~v 204 (220)
....+.+.+ ..+|.++.+
T Consensus 157 ~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 157 DKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp HHHHHHHHHHHTS--EEEEE
T ss_pred HHHHHHHHHHHHCCcCHHHH
Confidence 233444444 457877654
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.50 E-value=1.1e-06 Score=66.27 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=81.8
Q ss_pred cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI 112 (220)
Q Consensus 37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (220)
.+=|+|..+|+-+.+.. +.-.|.-|||+|.|||.++-++...|. .++++++ ++.+..+.+.
T Consensus 28 aI~PsSs~lA~~M~s~I-------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-------- 92 (194)
T COG3963 28 AILPSSSILARKMASVI-------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-------- 92 (194)
T ss_pred eecCCcHHHHHHHHhcc-------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------
Confidence 45577888888777653 344788999999999999999998875 4999998 6766666543
Q ss_pred ccCCCCCCCCCceEEEEeeeCCCC-Cc-cccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 113 SQMNPGSDLLGSIQAVELDWGNED-HI-KAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 113 ~~~~~~~~~~~~v~~~~ldw~~~~-~~-~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
...+.+...|.-+.. .+ ......||.|+|+-+ +-...--++++.+...+.+||.++-.
T Consensus 93 ---------~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 93 ---------YPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ---------CCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 223344443332222 01 123568999999887 33344567888888888888877643
No 192
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=9.7e-06 Score=69.21 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=99.6
Q ss_pred EEEeecCeEEEEEeCCCCccccccccch-------HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC
Q 027659 14 INLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86 (220)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g 86 (220)
|.+.+.+..+++--+.++.+.-.+=|+- -..||.-|.... ....+..++|-=||+|.+.+.+|..+
T Consensus 141 i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~la-------gw~~~~pl~DPmCGSGTi~IEAAl~~ 213 (381)
T COG0116 141 INVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLA-------GWKPDEPLLDPMCGSGTILIEAALIA 213 (381)
T ss_pred EEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHc-------CCCCCCccccCCCCccHHHHHHHHhc
Confidence 3455667777777666554332223322 234444444331 23344689999999999999999876
Q ss_pred C-----------------------------------------eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659 87 C-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (220)
Q Consensus 87 ~-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (220)
. .++++|+ +.+++.|+.|++..++ .+.
T Consensus 214 ~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----------~d~ 282 (381)
T COG0116 214 ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----------GDL 282 (381)
T ss_pred cccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----------Cce
Confidence 4 2779999 6799999999999988 678
Q ss_pred eEEEEeeeCCCCCccccCCCccEEEEecCCCCC---------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH---------LLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 125 v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~---------~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
|++.+.|.....+. .+.+|+||+|++|... .+..+.+++++.++.-+..+++.
T Consensus 283 I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 283 IEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred EEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999777665421 2689999999996532 24456666667777666666544
No 193
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.46 E-value=9.7e-07 Score=74.87 Aligned_cols=136 Identities=17% Similarity=0.102 Sum_probs=78.6
Q ss_pred ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (220)
Q Consensus 38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (220)
=|=-+.++..|+.... ...++.+|||||||-|---.-....+. .++++|+ .++|+.+++............
T Consensus 43 NwvKs~LI~~~~~~~~-------~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~ 115 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVK-------QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK 115 (331)
T ss_dssp HHHHHHHHHHHCHCCC-------CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred HHHHHHHHHHHHHhhh-------ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence 3556777777775331 222778999999998765555555554 5999999 569999988774322110000
Q ss_pred CCCCCCCCceEEEEeeeCCCC---CccccCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 116 NPGSDLLGSIQAVELDWGNED---HIKAVAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 116 ~~~~~~~~~v~~~~ldw~~~~---~~~~~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
.. ...-...+...|-.... .......+||+|-+--. |.-+ ....+++.+..+|+|||.++.+.+.
T Consensus 116 ~~--~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 116 QY--RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TS--EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cc--cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 00 00012233332211110 01112359999998776 5433 3567999999999999999998875
No 194
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.46 E-value=4.1e-06 Score=65.77 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=77.6
Q ss_pred cccchHHH--HHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659 37 TVWDASVV--FVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (220)
Q Consensus 37 ~~W~~s~~--l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (220)
..||.-++ +.+||.+. ..+..|-|+|||-+.++..+. .+.+|...|+ +. |
T Consensus 53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-----------n----- 105 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-----------N----- 105 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-----------C-----
Confidence 47888764 55677543 245689999999988874432 3456889996 22 1
Q ss_pred cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH
Q 027659 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ 193 (220)
Q Consensus 114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~ 193 (220)
+. +...|. ...|..++..|++|.+-.-....+..++....++|++||.++|+.-.-.....+.|.+
T Consensus 106 ---------~~--Vtacdi---a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 106 ---------PR--VTACDI---ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp ---------TT--EEES-T---TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred ---------CC--EEEecC---ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 12 333333 3344467899999988655567799999999999999999999987644445688988
Q ss_pred HHhc-CCeEEEe
Q 027659 194 MWKS-NFNVKLV 204 (220)
Q Consensus 194 ~~~~-~f~v~~v 204 (220)
.++. +|++..-
T Consensus 172 ~~~~~GF~~~~~ 183 (219)
T PF05148_consen 172 ALKKLGFKLKSK 183 (219)
T ss_dssp HHHCTTEEEEEE
T ss_pred HHHHCCCeEEec
Confidence 8865 8887653
No 195
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.44 E-value=1.8e-06 Score=69.42 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=78.1
Q ss_pred CcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
..+||||||.|-.-+.+|+...+ ++|+++ ...+..+...+...++ .|+.+.+.|.......-..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------------~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------------KNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------------CcEEEEcCCHHHHHHhcCCC
Confidence 57999999999999999998774 999997 5666666666666554 37888886554432222234
Q ss_pred CCccEEEEecC--CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 143 PPFDYIIGTDV--YAEHL-------LEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 143 ~~fD~V~~~d~--y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
++.|-|..+=+ ++..- .+.+++.+.+.|+|||.+.++....
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 58888877655 44332 4789999999999999999977553
No 196
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.1e-06 Score=67.12 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=71.0
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHh-CCe---EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~-g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
...+|.+.||+|+|+|.++-+++.+ |+. ++++|. ++.++..+.|+......-.. ++.-...++.+...| -
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~~~~~~~~l~ivvGD---g 153 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES--SSKLKRGELSIVVGD---G 153 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh--hhhhccCceEEEeCC---c
Confidence 3568999999999999999999954 443 489996 89999999999875421000 000124456666533 3
Q ss_pred CCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 136 DHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 136 ~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
........+||.|.+..- ...+.+.+-.-|+++|.+++-.
T Consensus 154 r~g~~e~a~YDaIhvGAa-----a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAA-----ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cccCCccCCcceEEEccC-----ccccHHHHHHhhccCCeEEEee
Confidence 323334678999976422 2233344444677888877643
No 197
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.42 E-value=2.3e-06 Score=65.17 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=61.2
Q ss_pred EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHH
Q 027659 90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIF 167 (220)
Q Consensus 90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~ 167 (220)
+++|. ++|++.++++...... ....++++...|. ..++..++.||+|+++.+ .+..+...+++.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence 47898 5699999876543221 0023678888554 344455678999999988 77778999999999
Q ss_pred HhhCCCcEEEEEEEecC
Q 027659 168 ALSGPKTTILLGYEIRS 184 (220)
Q Consensus 168 ~~l~~~g~~~i~~~~r~ 184 (220)
++|+|||.+++..-...
T Consensus 69 rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 69 RVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHcCcCeEEEEEECCCC
Confidence 99999999998765443
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.41 E-value=7.7e-06 Score=72.46 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (220)
Q Consensus 38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (220)
.-++|++.+..|.. ...+|.+|||++||.|-=+..+|.. + ..|++.|+ +.-++.+++|++..+.
T Consensus 96 Qd~sS~l~~~~L~~---------~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--- 163 (470)
T PRK11933 96 QEASSMLPVAALFA---------DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--- 163 (470)
T ss_pred ECHHHHHHHHHhcc---------CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---
Confidence 33456665655532 1236789999999999988888864 2 36999998 5688999999998765
Q ss_pred cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEE----ecC-CCCCC------------------hHHHHHHHHHhh
Q 027659 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----TDV-YAEHL------------------LEPLLQTIFALS 170 (220)
Q Consensus 114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~----~d~-y~~~~------------------~~~l~~~l~~~l 170 (220)
.++.+...|-..... .....||.|+. |.. -.... -..++....++|
T Consensus 164 ---------~nv~v~~~D~~~~~~--~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L 232 (470)
T PRK11933 164 ---------SNVALTHFDGRVFGA--ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL 232 (470)
T ss_pred ---------CeEEEEeCchhhhhh--hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 356666544322111 12457999994 322 11111 145777778889
Q ss_pred CCCcEEEEEEEecCc
Q 027659 171 GPKTTILLGYEIRST 185 (220)
Q Consensus 171 ~~~g~~~i~~~~r~~ 185 (220)
+|||.++.+...-++
T Consensus 233 kpGG~LVYSTCT~~~ 247 (470)
T PRK11933 233 KPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCcEEEEECCCCCH
Confidence 999998777655443
No 199
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.41 E-value=2.3e-06 Score=71.09 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCC--CCc
Q 027659 65 GKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNE--DHI 138 (220)
Q Consensus 65 ~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~--~~~ 138 (220)
..++||+|+|. .+..+..++ .|-++++||+ +.+++.|++|++.| .+ ..+|++....=... ..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchhh
Confidence 46899999998 566777765 4778999999 56999999999999 66 56787765321110 011
Q ss_pred cccCCCccEEEEecC-CCC
Q 027659 139 KAVAPPFDYIIGTDV-YAE 156 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~ 156 (220)
....+.||+.+|+++ |..
T Consensus 172 ~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp TT--S-EEEEEE-----SS
T ss_pred hcccceeeEEecCCccccC
Confidence 123468999999999 653
No 200
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.37 E-value=5e-06 Score=75.06 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=79.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC----------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g----------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw 132 (220)
.+.+|||.+||+|.+.+.++... ..+++.|+ +.+++.++.|+...+. ..+.+...+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence 45689999999999998887532 24899999 5699999998876541 1122222221
Q ss_pred CCCC--CccccCCCccEEEEecCCCCCC-----h------------------------------------------HHH-
Q 027659 133 GNED--HIKAVAPPFDYIIGTDVYAEHL-----L------------------------------------------EPL- 162 (220)
Q Consensus 133 ~~~~--~~~~~~~~fD~V~~~d~y~~~~-----~------------------------------------------~~l- 162 (220)
.... ......+.||+|++||+|.... . ..+
T Consensus 99 l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f 178 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVF 178 (524)
T ss_pred ccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHH
Confidence 1110 0011235899999999944210 0 012
Q ss_pred HHHHHHhhCCCcEEEEEEEecCc--hHHHHHHHHHhcCCeEEEee
Q 027659 163 LQTIFALSGPKTTILLGYEIRST--SVHEQMLQMWKSNFNVKLVP 205 (220)
Q Consensus 163 ~~~l~~~l~~~g~~~i~~~~r~~--~~~~~f~~~~~~~f~v~~v~ 205 (220)
+....++|+++|.+.+..+..-- .....|.+.+-+...+..|.
T Consensus 179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~ 223 (524)
T TIGR02987 179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQ 223 (524)
T ss_pred HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEE
Confidence 24456678999998887764221 22445666565556665543
No 201
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.33 E-value=6.2e-06 Score=69.44 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=77.0
Q ss_pred CCCCcEEEeCCcccHHHHHHHH---------hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659 63 LKGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~---------~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw 132 (220)
..+.+|+|-.||+|..-+.+.. ....++|.|+ +.++.+++.|+..++.. ..+......|.
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------~~~~~i~~~d~ 114 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------NSNINIIQGDS 114 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----------CBGCEEEES-T
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----------ccccccccccc
Confidence 3667899999999998887775 2346999999 56999999998776652 12233444332
Q ss_pred CCCCCccccCCCccEEEEecCCCCC-----C-----------------hHHHHHHHHHhhCCCcEEEEEEEecC---chH
Q 027659 133 GNEDHIKAVAPPFDYIIGTDVYAEH-----L-----------------LEPLLQTIFALSGPKTTILLGYEIRS---TSV 187 (220)
Q Consensus 133 ~~~~~~~~~~~~fD~V~~~d~y~~~-----~-----------------~~~l~~~l~~~l~~~g~~~i~~~~r~---~~~ 187 (220)
-..... .....||+|+++++|... . --.++..+.+.|+++|.+.+..+... ...
T Consensus 115 l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~ 193 (311)
T PF02384_consen 115 LENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSS 193 (311)
T ss_dssp TTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTH
T ss_pred cccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccch
Confidence 221111 024689999999993322 0 11477777788999999877777532 122
Q ss_pred HHHHHHHHhcCCeEE
Q 027659 188 HEQMLQMWKSNFNVK 202 (220)
Q Consensus 188 ~~~f~~~~~~~f~v~ 202 (220)
...+.+.+-+...++
T Consensus 194 ~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 194 EKKIRKYLLENGYIE 208 (311)
T ss_dssp HHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHhhchhh
Confidence 345555554444443
No 202
>PLN02823 spermine synthase
Probab=98.31 E-value=7.5e-06 Score=69.62 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++||.||+|.|..+..+++. + .+|+++|+ +++++.+++....+... -...++++...|-... +..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--------~~dprv~v~~~Da~~~--L~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--------FCDKRLELIINDARAE--LEK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--------ccCCceEEEEChhHHH--Hhh
Confidence 4568999999999999888775 3 36999999 67999999887654311 0135777776443222 122
Q ss_pred cCCCccEEEEecC--C--CCC---ChHHHHH-HHHHhhCCCcEEEEEEEe----cCchHHHHHHHHHhcCCe
Q 027659 141 VAPPFDYIIGTDV--Y--AEH---LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNFN 200 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y--~~~---~~~~l~~-~l~~~l~~~g~~~i~~~~----r~~~~~~~f~~~~~~~f~ 200 (220)
..++||+|+.--. . ... .-..+++ .+++.|+|+|++++-... ..........+.+++.|.
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~ 244 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK 244 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence 3568999996522 1 111 1346777 889999999987654322 112234455556666553
No 203
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.29 E-value=4.9e-06 Score=69.02 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCe-EEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Cc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~ 138 (220)
++..+++||||-|---+-.-+.|.. ++++|+.+ .++.++...+.-...-... .-.+.+...|-.... ..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~------~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKF------IFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcc------cceeEEEEeccchhHHHHhc
Confidence 5678999999998777777777764 99999976 8998887665332210000 012444443332211 11
Q ss_pred cccCCCccEEEEecC--CCC---CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 139 KAVAPPFDYIIGTDV--YAE---HLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~--y~~---~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
...+.+||+|-|--+ |.- +...-+++.+..+|+|||.++-+.|..
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 122344999988776 543 345678889999999999999887764
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.9e-05 Score=63.36 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=60.9
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..++..|||+|+|.|.++..+++.+++|+++++ +.+++.+++.... ..++++...|.-....
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~--- 90 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDF--- 90 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcc---
Confidence 334779999999999999999999999999999 5588888776541 3577888766544431
Q ss_pred cCC--CccEEEEecCCCCCC
Q 027659 141 VAP--PFDYIIGTDVYAEHL 158 (220)
Q Consensus 141 ~~~--~fD~V~~~d~y~~~~ 158 (220)
.. .++.|++|-+|+.+.
T Consensus 91 -~~l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 91 -PSLAQPYKVVANLPYNISS 109 (259)
T ss_pred -hhhcCCCEEEEcCCCcccH
Confidence 22 789999998877663
No 205
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.21 E-value=2.2e-05 Score=63.75 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=72.2
Q ss_pred cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhh
Q 027659 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSR 111 (220)
Q Consensus 33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (220)
+.|.++=.-..++..-+... ....+..|||+|-|||.++..+...|++|++++. +.|+..+++.+..-..
T Consensus 35 d~GQHilkNp~v~~~I~~ka--------~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~- 105 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKA--------DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK- 105 (315)
T ss_pred ccchhhhcCHHHHHHHHhcc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc-
Confidence 44555555444444443332 4456778999999999999999999999999998 6688888776653321
Q ss_pred hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC
Q 027659 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL 158 (220)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~ 158 (220)
..+.++...|.-..+ ...||.++++-+|..+.
T Consensus 106 ----------~~kLqV~~gD~lK~d-----~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 106 ----------SGKLQVLHGDFLKTD-----LPRFDGCVSNLPYQISS 137 (315)
T ss_pred ----------cceeeEEecccccCC-----CcccceeeccCCccccC
Confidence 357788776654432 35799999987777654
No 206
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.21 E-value=2.2e-06 Score=67.92 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..++...+|||||.|-+-+.+|. .+.+ ++|+++ ++..+.++.+.+.......... ....++.+...|..+....
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEEEECS-TTTHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccceeeccCccccHhH
Confidence 34577999999999999887774 4655 999998 5566666554433221110000 0123566665444332211
Q ss_pred cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHH---HHHHHHhcCCeEEEeeCCCCCcccC
Q 027659 139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMWG 214 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~---~f~~~~~~~f~v~~v~~~~~~~~~~ 214 (220)
...-...|+|+++.. |.++....|. .+..-|++|..++ +.+.-.+...+ .-...+...+++++.......-.|.
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L~-~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSWt 194 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLALA-ELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSWT 194 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHHH-HHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTTC
T ss_pred hhhhcCCCEEEEeccccCHHHHHHHH-HHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceeec
Confidence 111245799999999 8877666663 3334567776654 44333322111 0001112245666666555565565
Q ss_pred CCCC
Q 027659 215 NPLG 218 (220)
Q Consensus 215 ~~~~ 218 (220)
...+
T Consensus 195 ~~~~ 198 (205)
T PF08123_consen 195 SNSG 198 (205)
T ss_dssp SSB-
T ss_pred CCCc
Confidence 5444
No 207
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=65.87 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
...+.|||+|+|.+++.+|...-+|++++. |...+.+++|+..++. .++++...|....+ -+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------------~n~evv~gDA~~y~-----fe 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD------------VNWEVVVGDARDYD-----FE 95 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC------------cceEEEeccccccc-----cc
Confidence 358999999999999999998667999998 6688899999987774 68888885544332 25
Q ss_pred CccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEE
Q 027659 144 PFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 144 ~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
..|+|+|--. .-.+...+++..+.++|+..+.++
T Consensus 96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 6799987654 444556677777777888766654
No 208
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.19 E-value=6.4e-06 Score=65.12 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=79.4
Q ss_pred CCCcEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
...+.||.|||.|.++--+. ....+|-++|. +..++.+++.+..... ....+.+.-..+ ....
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~------------~v~~~~~~gLQ~---f~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP------------RVGEFYCVGLQD---FTPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC------------CEEEEEES-GGG-------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC------------CcceEEecCHhh---ccCC
Confidence 45689999999999998664 55557999997 6688888765544221 123333322122 2122
Q ss_pred CCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEecCch-------------HHHHHHHHHhc-CCeEEEe
Q 027659 142 APPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTS-------------VHEQMLQMWKS-NFNVKLV 204 (220)
Q Consensus 142 ~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~-------------~~~~f~~~~~~-~f~v~~v 204 (220)
..+||+|++--| |- +.++-.+++.++..|+|+|.+++=...-..+ ..+.|.+.+++ ++++..-
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 469999999998 43 4567888899999999999988754321111 24677777754 8877543
Q ss_pred -eCCCCCc
Q 027659 205 -PKAKEST 211 (220)
Q Consensus 205 -~~~~~~~ 211 (220)
.+..+++
T Consensus 200 ~~Q~~fP~ 207 (218)
T PF05891_consen 200 EKQKGFPK 207 (218)
T ss_dssp EE-TT--T
T ss_pred ccccCCCc
Confidence 3444433
No 209
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.17 E-value=3.4e-06 Score=67.04 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=88.6
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+|.+|||--.|.|..++.+++.|| .|+.++. +.++++++.|-=..++. ...+++...|.-+.- -..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~----------~~~i~iilGD~~e~V-~~~ 201 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF----------EIAIKIILGDAYEVV-KDF 201 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------ccccEEecccHHHHH-hcC
Confidence 3789999999999999999999999 6998887 66888887664222220 224555553322211 122
Q ss_pred cCCCccEEEEecC-CCCC---ChHHHHHHHHHhhCCCcEEEE--EEE---ecCchHHHHHHHHHhc-CCeEE
Q 027659 141 VAPPFDYIIGTDV-YAEH---LLEPLLQTIFALSGPKTTILL--GYE---IRSTSVHEQMLQMWKS-NFNVK 202 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~---~~~~l~~~l~~~l~~~g~~~i--~~~---~r~~~~~~~f~~~~~~-~f~v~ 202 (220)
.+++||+|+--++ +... .-+.|-+.+.++|+|||.++- ..+ -|..+......+.+.+ +|.+.
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 4678999999888 7644 346788999999999998763 222 2333455666777765 88743
No 210
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.15 E-value=2.8e-05 Score=62.78 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=83.4
Q ss_pred ccchHH--HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccC
Q 027659 38 VWDASV--VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQM 115 (220)
Q Consensus 38 ~W~~s~--~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~ 115 (220)
-||--+ ++.++|... .....|-|+|||-+-++. ..-.+|...|+-. .
T Consensus 162 kWP~nPld~ii~~ik~r----------~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~-------- 210 (325)
T KOG3045|consen 162 KWPENPLDVIIRKIKRR----------PKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------V-------- 210 (325)
T ss_pred hCCCChHHHHHHHHHhC----------cCceEEEecccchhhhhh---ccccceeeeeeec----------C--------
Confidence 566544 355566543 245689999999875544 3334688888521 0
Q ss_pred CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH
Q 027659 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 195 (220)
Q Consensus 116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~ 195 (220)
+-++...|..+ .|..+++.|+++.+-.....++..+++...++|++||.+||+...-.......|.+.+
T Consensus 211 --------~~~V~~cDm~~---vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l 279 (325)
T KOG3045|consen 211 --------NERVIACDMRN---VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRAL 279 (325)
T ss_pred --------CCceeeccccC---CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHH
Confidence 11334444433 4446789999998755556679999999999999999999997654433356688777
Q ss_pred h-cCCeEEEe
Q 027659 196 K-SNFNVKLV 204 (220)
Q Consensus 196 ~-~~f~v~~v 204 (220)
. -+|.+...
T Consensus 280 ~~lGF~~~~~ 289 (325)
T KOG3045|consen 280 TKLGFDVKHK 289 (325)
T ss_pred HHcCCeeeeh
Confidence 4 48877543
No 211
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.13 E-value=8.1e-06 Score=71.59 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=76.4
Q ss_pred cccccchHHHHHHHHhhccccCCCCCCCCCC---CcEEEeCCcccHHHHHHHHhCCeEEEe---cchh-hHHHHHHHHHH
Q 027659 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKG---KRVIELGAGCGVAGFGMALLGCNVITT---DQIE-VLPLLKRNVEW 107 (220)
Q Consensus 35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~---~~vLELGcG~G~~~l~la~~g~~v~~~---D~~~-~l~~~~~n~~~ 107 (220)
|..-..++....++|.+-. +....+ ..+||+|||+|..|..+..++..+..+ |..+ .++.+.+.
T Consensus 91 gt~F~~Ga~~Yid~i~~~~------~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR--- 161 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMI------PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER--- 161 (506)
T ss_pred CccccCCHHHHHHHHHHHh------hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc---
Confidence 3344446766677776654 121122 369999999999999999887653332 3222 23333211
Q ss_pred hhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
++. .-+.+ .....++.+.+.||+|-|+.| -+...-.-++-.+.++|+|||.++++.+.-+
T Consensus 162 -Gvp-----------a~~~~-----~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 162 -GVP-----------AMIGV-----LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred -Ccc-----------hhhhh-----hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 110 00111 112346677899999999999 3333335688889999999999999987644
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=3.5e-05 Score=61.20 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=76.3
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED- 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~- 136 (220)
....+++||||.=||.-++..|.. +.+|++.|+ .++.+...+-.+..+. ..+|++....-.+.-
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----------~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----------DHKITFIEGPALESLD 139 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----------cceeeeeecchhhhHH
Confidence 347789999999888888887754 668999999 5688888777777766 567888774332211
Q ss_pred Cc--cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 137 HI--KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 137 ~~--~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
++ ....+.||+++.- .+...+......+.+++++||++++-.
T Consensus 140 ~l~~~~~~~tfDfaFvD--adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVD--ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEEc--cchHHHHHHHHHHHhhcccccEEEEec
Confidence 11 1235789999933 455555577788888999999987643
No 213
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.11 E-value=7.9e-06 Score=67.16 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=77.6
Q ss_pred CCCcEEEeCCcccH----HHHHHHHhC-------CeEEEecch-hhHHHHHHHHHH--hh---hhh---ccC---CCC--
Q 027659 64 KGKRVIELGAGCGV----AGFGMALLG-------CNVITTDQI-EVLPLLKRNVEW--NT---SRI---SQM---NPG-- 118 (220)
Q Consensus 64 ~~~~vLELGcG~G~----~~l~la~~g-------~~v~~~D~~-~~l~~~~~n~~~--n~---~~~---~~~---~~~-- 118 (220)
+.-+|+-.||+||- +++.+...+ .+|++||++ .+|+.|+.-+=. +. +.. .+. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999995 344444332 369999995 599888753311 11 100 000 000
Q ss_pred ----CCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCC-ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEH-LLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 119 ----~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~-~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
......|.|..++-..... ..+.||+|+|-.| |... .-..++..+...|+|||.+++.+...-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 1124467777765544321 4678999999999 6654 5678999999999999999998776544
No 214
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.08 E-value=8.8e-06 Score=70.06 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=66.2
Q ss_pred cEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-cCC
Q 027659 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAP 143 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~ 143 (220)
.|||+|+|||++++++++.|+. |++++. ..|.+.+++-...|+. .++|.++.- ...+... ...
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vInk---rStev~vg~~~ 134 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVINK---RSTEVKVGGSS 134 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeecc---ccceeeecCcc
Confidence 5999999999999999999985 999996 7899999999999987 467776652 1111111 123
Q ss_pred CccEEEEecC----CCCCChHHHHHHHHHhhCCCc
Q 027659 144 PFDYIIGTDV----YAEHLLEPLLQTIFALSGPKT 174 (220)
Q Consensus 144 ~fD~V~~~d~----y~~~~~~~l~~~l~~~l~~~g 174 (220)
+.|+++..+. -....++.+-.....++.++.
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCC
Confidence 4677766554 123345666666667777653
No 215
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.06 E-value=5.9e-05 Score=62.06 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=87.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-C---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
+.-+|||+-||.|..=+-+... . .+|++.|+ +..++..++-++.+++ ..-+++.+.|-.+....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHh
Confidence 4568999999999987766543 2 35999999 5599999999999987 34559999877666555
Q ss_pred cccCCCccEEEEecC--CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 139 KAVAPPFDYIIGTDV--YAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~--y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
......+++++.+.+ ++.+ .+...++-+..++.|||.++.+....++.
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 555678899999999 4444 35667888888999999999887777764
No 216
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=1.4e-05 Score=63.40 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=75.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
..+.++|||||.|.+.--+...|. +++.+|.+ .|++.++..-. +.. .+.... ++.+.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i-------------~~~~~v---~DEE~Ldf~ 134 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI-------------ETSYFV---GDEEFLDFK 134 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce-------------EEEEEe---cchhccccc
Confidence 356899999999999988887776 59999985 57776654211 211 223333 455556667
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
++++|+|+++-. ++..+++..+..++..|||+|.++-+
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 889999999988 99999999999999999999988754
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=98.03 E-value=0.00013 Score=59.97 Aligned_cols=119 Identities=8% Similarity=-0.094 Sum_probs=79.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
..++||=+|.|-|...-.+.+...+|+++|+ +++++.+++-....... -..+++++.. |-. ....
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~--~~~----~~~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAK--QLL----DLDI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEee--hhh----hccC
Confidence 4579999999999999999988668999999 56999998844322111 0134666654 211 1123
Q ss_pred CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE--EecCchHHHHHHHHHhcCCe
Q 027659 143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY--EIRSTSVHEQMLQMWKSNFN 200 (220)
Q Consensus 143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~--~~r~~~~~~~f~~~~~~~f~ 200 (220)
++||+||.-..|. +.+.+.+++.|+|+|.++.-. +.-..+.+....+.+++.|.
T Consensus 138 ~~fDVIIvDs~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 138 KKYDLIICLQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CcCCEEEEcCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 6899999432255 456688899999999988632 22223345555666666776
No 218
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.01 E-value=0.00025 Score=60.02 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=68.9
Q ss_pred chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (220)
Q Consensus 40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (220)
+++.-|.+.+..............+|+++|||||++|-.+-.+++.|++|+++|...+-+.+ ..
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L----~~------------ 250 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSL----MD------------ 250 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhh----hC------------
Confidence 34555665554332100000124588999999999999999999999999999964432222 21
Q ss_pred CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC--cEEEEEE
Q 027659 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK--TTILLGY 180 (220)
Q Consensus 120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~--g~~~i~~ 180 (220)
.++|.....+--.. .+ ..+.+|+|+|--+ ..+..+...+...+..| ..+++..
T Consensus 251 --~~~V~h~~~d~fr~--~p-~~~~vDwvVcDmv---e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 251 --TGQVEHLRADGFKF--RP-PRKNVDWLVCDMV---EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred --CCCEEEEeccCccc--CC-CCCCCCEEEEecc---cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 24566665332221 11 1568999887655 22445556666666544 3444443
No 219
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.01 E-value=2.4e-05 Score=58.05 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=47.0
Q ss_pred cEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
.+||+|||.|..++.+++.+. +|+++|. +++.+.+++|++.|+. .++.+....+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCC
Confidence 489999999999999998876 5999997 7799999999999875 2466666666543
No 220
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.99 E-value=1.9e-05 Score=65.64 Aligned_cols=117 Identities=22% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCcEEEeCCcccH----HHHHHHHh------CCeEEEecc-hhhHHHHHHHHHH-h---hhhh---ccC-----CCC---
Q 027659 65 GKRVIELGAGCGV----AGFGMALL------GCNVITTDQ-IEVLPLLKRNVEW-N---TSRI---SQM-----NPG--- 118 (220)
Q Consensus 65 ~~~vLELGcG~G~----~~l~la~~------g~~v~~~D~-~~~l~~~~~n~~~-n---~~~~---~~~-----~~~--- 118 (220)
..+|+-.||.||- +++.+... ..+|++||+ +.+|+.|++.+-. . ++.. .+. .+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999995 33333332 136999999 5699998875311 0 0000 000 000
Q ss_pred ----CCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 119 ----~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
......|.|..++..+.. .+ ..+.||+|+|..+ |+ .+....+++.+.+.|+|||.+++.+...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~-~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ-WA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC-Cc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 012356777776655421 11 2468999999888 55 4457899999999999999998877543
No 221
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.97 E-value=4.9e-05 Score=68.29 Aligned_cols=106 Identities=11% Similarity=0.018 Sum_probs=73.8
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+..+||||||.|-..+.+|.... .++++|. ...+..+.+.+...++ .|+.+...++...... .
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------------~N~~~~~~~~~~~~~~-~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------------TNFLLFPNNLDLILND-L 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------------CeEEEEcCCHHHHHHh-c
Confidence 467899999999999999998866 4999997 4555555555554443 4677766443221111 2
Q ss_pred cCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 141 VAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 141 ~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
.+.++|-|..+-+ +... ..+.+++.+.++|+|||.++++...
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3567898877666 4322 2468999999999999999986543
No 222
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.92 E-value=6.2e-06 Score=64.90 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCCcEEEeCCcccHH----HHHHHHh-----C--CeEEEecc-hhhHHHHHHHH-HHhhhhh------cc----CCC---
Q 027659 64 KGKRVIELGAGCGVA----GFGMALL-----G--CNVITTDQ-IEVLPLLKRNV-EWNTSRI------SQ----MNP--- 117 (220)
Q Consensus 64 ~~~~vLELGcG~G~~----~l~la~~-----g--~~v~~~D~-~~~l~~~~~n~-~~n~~~~------~~----~~~--- 117 (220)
+..+|+-.||+||-= ++.+... + .+|++||+ +.+++.|++-+ ..+.+.. .+ ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 446899999999963 3333331 1 37999999 55888886532 1111100 00 000
Q ss_pred --CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 118 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 118 --~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
...-..+|.|..++..+ .....+.||+|+|..| |. .+....+++.+.+.|+|||.+++....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 00124578888877666 1224679999999999 55 455688999999999999999997644
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.92 E-value=0.00012 Score=60.23 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=72.7
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
..-+++-+.+.. ...++..|||+|+|+|.++..++..+.+|+++|. ++.++.+++....
T Consensus 15 ~~~~~~~Iv~~~-------~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~------------- 74 (262)
T PF00398_consen 15 DPNIADKIVDAL-------DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS------------- 74 (262)
T ss_dssp HHHHHHHHHHHH-------TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------------
T ss_pred CHHHHHHHHHhc-------CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------------
Confidence 444555555543 2337889999999999999999999988999998 5688888776552
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCC
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGP 172 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~ 172 (220)
..++++...|................|++|-+|. .-.+++..+...-+.
T Consensus 75 -~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 75 -NPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYN--ISSPILRKLLELYRF 123 (262)
T ss_dssp -CSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGT--GHHHHHHHHHHHGGG
T ss_pred -cccceeeecchhccccHHhhcCCceEEEEEeccc--chHHHHHHHhhcccc
Confidence 3578888866655432221234667888887763 234555555443333
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.86 E-value=0.00025 Score=56.17 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=70.9
Q ss_pred EEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659 68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (220)
Q Consensus 68 vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 144 (220)
|.|+||--|.+++.|.+.|. +|+++|+ +.-++.++.|++.+++ ..++++...|=- ..++ +.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rlgdGL--~~l~-~~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRLGDGL--EVLK-PGED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE-SGG--GG---GGG-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEECCcc--cccC-CCCC
Confidence 68999999999999999986 5999999 5599999999999887 467888874311 1121 2234
Q ss_pred ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeE
Q 027659 145 FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 201 (220)
Q Consensus 145 fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v 201 (220)
.|.|+.+.+ -. .+..++......++.... +|..|.......+.|+. +.+|.+
T Consensus 67 ~d~ivIAGMGG~--lI~~ILe~~~~~~~~~~~-lILqP~~~~~~LR~~L~--~~gf~I 119 (205)
T PF04816_consen 67 VDTIVIAGMGGE--LIIEILEAGPEKLSSAKR-LILQPNTHAYELRRWLY--ENGFEI 119 (205)
T ss_dssp --EEEEEEE-HH--HHHHHHHHTGGGGTT--E-EEEEESS-HHHHHHHHH--HTTEEE
T ss_pred CCEEEEecCCHH--HHHHHHHhhHHHhccCCe-EEEeCCCChHHHHHHHH--HCCCEE
Confidence 799988887 22 244444444444444344 45566665544555543 446655
No 225
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00088 Score=57.59 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=76.6
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhC----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
...|.+|||+-++.|-=+..+|++. ..|++.|. +.=++.++.|++.-+. .++.....|-....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~ 221 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLA 221 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEeccccccc
Confidence 3477899999999987777666553 34799998 5589999999998876 34566654433322
Q ss_pred CccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659 137 HIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
.......+||.|+.-.+ =. ++ ....++....++|+|||.++.+.....++
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 22222336999987443 11 11 13357777788899999988887766553
No 226
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=1.4e-05 Score=65.33 Aligned_cols=123 Identities=24% Similarity=0.207 Sum_probs=75.7
Q ss_pred ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhh
Q 027659 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (220)
Q Consensus 32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~ 110 (220)
..+|..+|++++.|.+++.++ |....+.++.++|||.++....+++..--|...|- ..+.-++..+...+..
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 137 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRD 137 (262)
T ss_pred HHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhcccc
Confidence 467889999999999999988 35578899999999999988666665443444443 2233333333333221
Q ss_pred hhccCCCCCCCCCceEEEEeeeCCCCCccc-cCCCccEEEEecC-CCCCChHHHHHHHHHhh
Q 027659 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDV-YAEHLLEPLLQTIFALS 170 (220)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l 170 (220)
.. ...+-+...++|......+. ....+|+|+++|+ |. ....+++.+...+|
T Consensus 138 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 138 LS--------LEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred cc--------ccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 10 01111222222222111111 1234999999999 99 77778888777764
No 227
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.82 E-value=1.3e-05 Score=65.37 Aligned_cols=146 Identities=16% Similarity=0.256 Sum_probs=81.0
Q ss_pred CCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhh-hh-------ccCCCCC--------CC
Q 027659 60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGS--------DL 121 (220)
Q Consensus 60 ~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~--------~~ 121 (220)
+...+|.++||+|||+-+..+..|..-. +++++|+ +..++.+++=++.-+. .. +...... ..
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 4567888999999999777665564444 5999998 5566666554332110 00 0000000 00
Q ss_pred CCceE-EEEeeeCCCCCccc---cCCCccEEEEecC--CC---CCChHHHHHHHHHhhCCCcEEEEEEEecCc-------
Q 027659 122 LGSIQ-AVELDWGNEDHIKA---VAPPFDYIIGTDV--YA---EHLLEPLLQTIFALSGPKTTILLGYEIRST------- 185 (220)
Q Consensus 122 ~~~v~-~~~ldw~~~~~~~~---~~~~fD~V~~~d~--y~---~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------- 185 (220)
...|+ +...|......+.. .+++||+|+++-| .- .+.+...++.+.++|||||.++++.-....
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence 11233 44555555544432 2346999999988 33 334667777788889999999988643322
Q ss_pred -----hHHHHHH-HHHh-cCCeEEEee
Q 027659 186 -----SVHEQML-QMWK-SNFNVKLVP 205 (220)
Q Consensus 186 -----~~~~~f~-~~~~-~~f~v~~v~ 205 (220)
...+.++ +.++ .+|.+....
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1124444 4554 489988776
No 228
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00033 Score=56.12 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=74.8
Q ss_pred ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecch--hhHHHHHHHHHHhhhhhcc
Q 027659 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI--EVLPLLKRNVEWNTSRISQ 114 (220)
Q Consensus 38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~--~~l~~~~~n~~~n~~~~~~ 114 (220)
+=+++.-|...|.+. .-.++|+.|||+|+-||-.+.++.+.||+ |+++|.. +.-.-++.+
T Consensus 60 VSRG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---------- 122 (245)
T COG1189 60 VSRGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---------- 122 (245)
T ss_pred cccHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------
Confidence 445688898888876 35679999999999999999999999986 9999962 332333221
Q ss_pred CCCCCCCCCceEEE-EeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 115 MNPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 115 ~~~~~~~~~~v~~~-~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.++... ..+...... ....+..|++++--.| -....++..+..++++++.++.-.
T Consensus 123 --------~rV~~~E~tN~r~l~~-~~~~~~~d~~v~DvSF--ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 --------PRVIVLERTNVRYLTP-EDFTEKPDLIVIDVSF--ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred --------CcEEEEecCChhhCCH-HHcccCCCeEEEEeeh--hhHHHHHHHHHHhcCCCceEEEEe
Confidence 233332 222111111 1123467888754332 236677788888888887766543
No 229
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.74 E-value=0.00035 Score=57.01 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=82.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+.++||=||-|.|...-.+.+.. .+|+++|+ +++++.+++-....... ...+++++...|-... +..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~--l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKF--LKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHH--HHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHH--HHh
Confidence 56899999999999988888765 47999999 66889988866544321 0135777776332111 112
Q ss_pred cCC-CccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEecC--chHHHHHHHHHhcCCe
Q 027659 141 VAP-PFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN 200 (220)
Q Consensus 141 ~~~-~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~r~--~~~~~~f~~~~~~~f~ 200 (220)
..+ +||+|+.--. .... .-.++.+.+++.|+|+|++++-..... ........+.++..|.
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 234 8999997333 1111 247899999999999999887553322 2234455566676665
No 230
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.74 E-value=0.00097 Score=48.46 Aligned_cols=103 Identities=24% Similarity=0.297 Sum_probs=65.1
Q ss_pred EEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC-
Q 027659 68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA- 142 (220)
Q Consensus 68 vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~- 142 (220)
++|+|||+|... .++... ..++++|. +.++...+..... .. ...+.+...++... ..+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~ 117 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----------LGLVDFVVADALGG-VLPFEDS 117 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----------CCceEEEEeccccC-CCCCCCC
Confidence 999999999877 444443 37888998 4566663333322 11 01145666554431 122223
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
..||++..... +... ...++..+.+.++|+|.+++.......
T Consensus 118 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 118 ASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 47999944434 3333 888999999999999999888765443
No 231
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.69 E-value=2.4e-05 Score=60.68 Aligned_cols=52 Identities=27% Similarity=0.177 Sum_probs=35.8
Q ss_pred chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchh
Q 027659 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE 96 (220)
Q Consensus 40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~ 96 (220)
+++.-|.+-+.... .+ ....+.+||||||++|-.+-++++.+ .+|+++|...
T Consensus 4 Ra~~KL~ei~~~~~---~~--~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 4 RAAFKLYEIDEKFK---IF--KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp THHHHHHHHHHTTS---SS---TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHHCC---CC--CcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 35566666665441 00 11145899999999999999999887 5799999844
No 232
>PHA01634 hypothetical protein
Probab=97.66 E-value=0.00021 Score=51.71 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhh
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (220)
-++++++|+|+|++.|--++.++..||+ |++.+. +...+.+++|++.|..
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4678999999999999999999999997 999997 5588899999998854
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.65 E-value=0.00023 Score=53.01 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHH------hCCeEEEecc-hhhHHHHHHHHHHhh
Q 027659 63 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQ-IEVLPLLKRNVEWNT 109 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~------~g~~v~~~D~-~~~l~~~~~n~~~n~ 109 (220)
.+..+|+|+|||.|.+|..++. .+.+|+++|. ++.++.+++..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567899999999999999998 3567999998 557777777666544
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=97.65 E-value=0.0003 Score=57.01 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=56.6
Q ss_pred cEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f 145 (220)
+|||+-+|+|..|+.+|.+|++|+++|. +.+..+++.|++...... .... ....++++...|-.+. +......|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~-~~~~--~~~~ri~l~~~da~~~--L~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA-EIGG--WLQERLQLIHASSLTA--LTDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhcc-ccch--hhhceEEEEeCcHHHH--HhhCCCCC
Confidence 8999999999999999999999999998 568888999888632100 0000 0013455555332221 11123479
Q ss_pred cEEEEecCCCCC
Q 027659 146 DYIIGTDVYAEH 157 (220)
Q Consensus 146 D~V~~~d~y~~~ 157 (220)
|+|+.-++|...
T Consensus 166 DVVYlDPMfp~~ 177 (250)
T PRK10742 166 QVVYLDPMFPHK 177 (250)
T ss_pred cEEEECCCCCCC
Confidence 999977776543
No 235
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.63 E-value=0.00014 Score=60.80 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=38.1
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHH
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW 107 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~ 107 (220)
.++..+||.+||.|--+..+++.. .+|+++|. +++++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356799999999999999999764 57999998 7799999887643
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0048 Score=48.65 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred CCCcEEEeCCcccHHHHHHHHh-CC--eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659 64 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~- 139 (220)
.+.+|+||||-.|-.+.++++. ++ +|+++|+.++-. ...|.+.+.|........
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------------------~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------------------IPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------------CCCceEEeeeccCccHHHH
Confidence 5789999999999999999976 43 399999844111 235788888887765321
Q ss_pred ----ccCCCccEEEEecC-----CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEE
Q 027659 140 ----AVAPPFDYIIGTDV-----YAEHL-------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 203 (220)
Q Consensus 140 ----~~~~~fD~V~~~d~-----y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~ 203 (220)
....++|+|++-.. ....+ ....+......|+|+|.+++-.-.- +..+.++..+++.|+...
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~~~~F~~v~ 180 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKALRRLFRKVK 180 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHHHHhhceeE
Confidence 12334699985322 11111 2234444556789999988754332 235788888888876544
Q ss_pred e
Q 027659 204 V 204 (220)
Q Consensus 204 v 204 (220)
+
T Consensus 181 ~ 181 (205)
T COG0293 181 I 181 (205)
T ss_pred E
Confidence 4
No 237
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.59 E-value=0.00099 Score=55.03 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCcEEEeCCcc-cHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHH-HhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 65 GKRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 65 ~~~vLELGcG~-G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.++|+=||||. -+.++.+++. ++.|+.+|+ +++++.+++-+. ..++ ..++.+...|-.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~--- 186 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDV--- 186 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhcc---
Confidence 35999999997 8889999864 456999998 679999988777 4455 46788888654332
Q ss_pred cccCCCccEEEEecC-C-CCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 139 KAVAPPFDYIIGTDV-Y-AEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y-~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
...-..||+|+.+-. . ..+.-..++..+.+.++||..+++=
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 112358999987777 3 5556789999999999999988874
No 238
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.52 E-value=0.0012 Score=54.78 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=58.5
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+..++|||+|||+|....++... + .+++++|. +.|++..+.-+..... ............+.
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----------~~~~~~~~~~~~~~-- 97 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----------NRNAEWRRVLYRDF-- 97 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----------cccchhhhhhhccc--
Confidence 467789999999999877766643 2 35999998 5588877664432211 00000000000111
Q ss_pred ccccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 138 IKAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
. .....|+|+++-+ -. ......+++.+...+++ .++|..+
T Consensus 98 ~--~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 98 L--PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred c--cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 1 1123499999998 32 24455666666666655 5555544
No 239
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.51 E-value=0.0036 Score=49.85 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=92.0
Q ss_pred cccccccch-HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hC--CeEEEecc-hhhHHHHHHHHHH
Q 027659 33 HLGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQ-IEVLPLLKRNVEW 107 (220)
Q Consensus 33 ~~g~~~W~~-s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g--~~v~~~D~-~~~l~~~~~n~~~ 107 (220)
....++|+- -.-|+..|...... -...+|.+||=||+.+|..---++. .| ..|++++. +...+.+-. ++.
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~~----~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~ 119 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLEN----IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAK 119 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHH
T ss_pred ccceeecCchhhHHHHHHHcCccc----cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-Hhc
Confidence 346678865 23455555433210 1345789999999999987777775 34 36999998 444333322 221
Q ss_pred hhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch-
Q 027659 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS- 186 (220)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~- 186 (220)
. ..||-..--|-..+..-...-+..|+|++- +-.+++.+-++.....+|++||.++++.+.|+-+
T Consensus 120 ~-------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D-VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~ 185 (229)
T PF01269_consen 120 K-------------RPNIIPILEDARHPEKYRMLVEMVDVIFQD-VAQPDQARIAALNARHFLKPGGHLIISIKARSIDS 185 (229)
T ss_dssp H-------------STTEEEEES-TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-S
T ss_pred c-------------CCceeeeeccCCChHHhhcccccccEEEec-CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccC
Confidence 1 357777776665555443345688988853 4345567778888889999999999999877643
Q ss_pred ------HHHHHHHHHhc-CCeE-EEeeCCC
Q 027659 187 ------VHEQMLQMWKS-NFNV-KLVPKAK 208 (220)
Q Consensus 187 ------~~~~f~~~~~~-~f~v-~~v~~~~ 208 (220)
++..-.+.+++ +|++ +.+.-+.
T Consensus 186 t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP 215 (229)
T PF01269_consen 186 TADPEEVFAEEVKKLKEEGFKPLEQITLEP 215 (229)
T ss_dssp SSSHHHHHHHHHHHHHCTTCEEEEEEE-TT
T ss_pred cCCHHHHHHHHHHHHHHcCCChheEeccCC
Confidence 23333455554 7888 4444433
No 240
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.48 E-value=0.0018 Score=51.23 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=79.9
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (220)
++.+|.+||....... .......++||+||=+.-..+. ..+ .+|+.+|+..
T Consensus 31 SSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns----------------------- 82 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS----------------------- 82 (219)
T ss_pred hhHHHHHHhhhhcccc---ccccccceEEeecccCCCCccc--ccCceeeEEeecCC-----------------------
Confidence 7999999998763210 0111236899999864332222 222 2599999732
Q ss_pred CCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCCC--hHHHHHHHHHhhCCCcE-----EEEEEEe------cC
Q 027659 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEHL--LEPLLQTIFALSGPKTT-----ILLGYEI------RS 184 (220)
Q Consensus 120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~~--~~~l~~~l~~~l~~~g~-----~~i~~~~------r~ 184 (220)
..-.+.+.|+-+........++||+|.+|-| |-+.. --..++.+.++|+|+|. ++|+.|. |.
T Consensus 83 ---~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy 159 (219)
T PF11968_consen 83 ---QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY 159 (219)
T ss_pred ---CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc
Confidence 0113334444433211123678999999999 66543 34688888999999999 8887653 22
Q ss_pred chHHHHHHHHHhc-CCeEEEe
Q 027659 185 TSVHEQMLQMWKS-NFNVKLV 204 (220)
Q Consensus 185 ~~~~~~f~~~~~~-~f~v~~v 204 (220)
. ..+.|.+.+.. +|...+.
T Consensus 160 ~-~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 160 M-TEERLREIMESLGFTRVKY 179 (219)
T ss_pred c-CHHHHHHHHHhCCcEEEEE
Confidence 2 24566666654 7766443
No 241
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.47 E-value=0.0015 Score=53.76 Aligned_cols=138 Identities=18% Similarity=0.153 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhh------hhc--------------c----CC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTS------RIS--------------Q----MN 116 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~------~~~--------------~----~~ 116 (220)
.....+||==|||.|.++..+|.+|..|.+.|.+- |+- ..|.-.|.. .+- + ..
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll--~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLL--ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHH--HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 34567899999999999999999999999999865 532 223333321 110 0 01
Q ss_pred CC----C--CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC---CChHHHHHHHHHhhCCCcEEEEEE----Eec
Q 027659 117 PG----S--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE---HLLEPLLQTIFALSGPKTTILLGY----EIR 183 (220)
Q Consensus 117 ~~----~--~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~---~~~~~l~~~l~~~l~~~g~~~i~~----~~r 183 (220)
|+ + ....++.....|+.+....+...++||.|+.+ |+. ..+-..+++|.++|||||.-+=.. ...
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeechHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 10 0 12345555554443332222224799999865 433 346788899999999999544221 111
Q ss_pred Cc---------hHHHHHHHHHhc-CCeEEE
Q 027659 184 ST---------SVHEQMLQMWKS-NFNVKL 203 (220)
Q Consensus 184 ~~---------~~~~~f~~~~~~-~f~v~~ 203 (220)
.. -..+++....+. +|++..
T Consensus 210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 210 PMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 11 114566666644 888854
No 242
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.44 E-value=0.00085 Score=56.73 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=68.9
Q ss_pred CCCcEEEeCCcccHHHHHHH-Hh-----CCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEE--EEeeeCC
Q 027659 64 KGKRVIELGAGCGVAGFGMA-LL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN 134 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la-~~-----g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~--~~ldw~~ 134 (220)
.+..++|||||.|.=.-.+. .+ ...++.+|++ ++|+.+..++.... .+.+.+ ...|+.+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------------~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------------FSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------------CCCeEEEEEEecHHH
Confidence 45689999999987543332 22 3469999995 58888888776222 134444 4444433
Q ss_pred CCC-ccc--cCCCccEEEEec--C--CCCCChHHHHHHHHH-hhCCCcEEEEEEEec
Q 027659 135 EDH-IKA--VAPPFDYIIGTD--V--YAEHLLEPLLQTIFA-LSGPKTTILLGYEIR 183 (220)
Q Consensus 135 ~~~-~~~--~~~~fD~V~~~d--~--y~~~~~~~l~~~l~~-~l~~~g~~~i~~~~r 183 (220)
... ++. ......+++.-. + +.+.....+++.+.+ .|+|++.++|..-..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 321 111 123456665543 3 556667789999999 999999999986433
No 243
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.43 E-value=9.1e-05 Score=58.49 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~ 141 (220)
.-..|+|--||.|-..+..|..++.|+++|+ |.-+..++.|++..+. .++|.+.+.||.+... +...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~ 162 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKAD 162 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhh
Confidence 3457999999999999999999999999999 6689999999999988 4699999999976542 2223
Q ss_pred CCCccEEEEecC
Q 027659 142 APPFDYIIGTDV 153 (220)
Q Consensus 142 ~~~fD~V~~~d~ 153 (220)
...+|.|+.+++
T Consensus 163 K~~~~~vf~spp 174 (263)
T KOG2730|consen 163 KIKYDCVFLSPP 174 (263)
T ss_pred hheeeeeecCCC
Confidence 345789999988
No 244
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.42 E-value=3.9e-05 Score=60.03 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=67.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
...++||||+|.|-++...+..-.+|++|+.+. |...++.. | -+ .....+|.+. +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk---~--------------yn-Vl~~~ew~~t------~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK---N--------------YN-VLTEIEWLQT------D 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc---C--------------Cc-eeeehhhhhc------C
Confidence 457999999999999998887766799999855 66655432 1 11 2234566543 4
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCC-CcEEEEEE
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGP-KTTILLGY 180 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~-~g~~~i~~ 180 (220)
-+||+|.|-.+ =...+.-.|++.+..+|.| +|.++++.
T Consensus 168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 57999998777 4444567899999999998 78888763
No 245
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0016 Score=54.06 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=71.4
Q ss_pred CcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
++||-||-|.|...-.+.+.. .+++++|+ +++++.+++=...-... ...++++...-|-.+. +....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCC
Confidence 599999999999999999876 46999999 56888887755432210 0035666666332221 12234
Q ss_pred CCccEEEEecC-CC---CC-ChHHHHHHHHHhhCCCcEEEEE
Q 027659 143 PPFDYIIGTDV-YA---EH-LLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 143 ~~fD~V~~~d~-y~---~~-~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
.+||+|+.--. .. .. .-..+.+.++++|+++|++..-
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 48999996544 31 11 1378999999999999998764
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00087 Score=52.94 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=76.0
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+|.+||++|=|.|++.-.+..... +-+.++. |++++.++.+.-.. ..+|......|.+..+. .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~-L 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNT-L 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhcc-c
Confidence 4788999999999998888876654 4677786 88998888775432 45888899999876432 2
Q ss_pred cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
+++.||-|+---- -.-++...+.+.+.++|||+|++-.+.
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 3567999874322 223446677788889999999876654
No 247
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.08 E-value=0.0014 Score=56.66 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
.+.+|||-=||+|+=|+-.+.. +. +|++-|+ +++++.+++|++.|++. ...+++...|-... +.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----------~~~~~v~~~DAn~l--l~ 116 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----------DERIEVSNMDANVL--LY 116 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------GCCEEEEES-HHHH--HC
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------CceEEEehhhHHHH--hh
Confidence 3458999999999999999976 33 5999999 67999999999999982 12466665333221 11
Q ss_pred ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.....||+|=. |+|. ...++++...+.++.||.++++.+
T Consensus 117 ~~~~~fD~IDl-DPfG--Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 117 SRQERFDVIDL-DPFG--SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HSTT-EEEEEE---SS----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred hccccCCEEEe-CCCC--CccHhHHHHHHHhhcCCEEEEecc
Confidence 24678999843 2233 356899999999999999999874
No 248
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.05 E-value=0.024 Score=45.02 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=75.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
++.++.|+||--|.+++.+.+.+. .+++.|. +-.++.+.+|+..|++ ..++++...|--.. + .
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~dgl~~--l-~ 81 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLGDGLAV--L-E 81 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEeccCCccc--c-C
Confidence 445699999999999999998764 4999998 5599999999999987 46777777543111 1 2
Q ss_pred cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH
Q 027659 141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ 193 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~ 193 (220)
....+|+|+.+.+ ....+..++..-...++.--.+ +-.|.-+....+.|+.
T Consensus 82 ~~d~~d~ivIAGM-GG~lI~~ILee~~~~l~~~~rl-ILQPn~~~~~LR~~L~ 132 (226)
T COG2384 82 LEDEIDVIVIAGM-GGTLIREILEEGKEKLKGVERL-ILQPNIHTYELREWLS 132 (226)
T ss_pred ccCCcCEEEEeCC-cHHHHHHHHHHhhhhhcCcceE-EECCCCCHHHHHHHHH
Confidence 3457999998887 1112444455444445433233 4455555544566654
No 249
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.042 Score=43.18 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=91.7
Q ss_pred ccccch-HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hC-CeEEEecc-hhhHHHHHHHHHHhhhh
Q 027659 36 TTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG-CNVITTDQ-IEVLPLLKRNVEWNTSR 111 (220)
Q Consensus 36 ~~~W~~-s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g-~~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (220)
.+.|+. -.-|+.-+..-.. .-...+|.+||=||+-+|...--.+. .| ..|++++. +...+-+-.-++.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~----~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---- 122 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK----NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---- 122 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc----cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh----
Confidence 467765 2244544543321 12345789999999999987666664 34 35999998 5444333222221
Q ss_pred hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH----
Q 027659 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV---- 187 (220)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~---- 187 (220)
..|+-....|...++.-...-+..|+|+. |+-.+.+.+-+......+|+++|.++++.+.|+-++
T Consensus 123 ----------R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 123 ----------RPNIIPILEDARKPEKYRHLVEKVDVIYQ-DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred ----------CCCceeeecccCCcHHhhhhcccccEEEE-ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 23556666555555433334566787773 444556677788888999999999999999998542
Q ss_pred ---HHHHHHHHh-cCCeEEE
Q 027659 188 ---HEQMLQMWK-SNFNVKL 203 (220)
Q Consensus 188 ---~~~f~~~~~-~~f~v~~ 203 (220)
++.-.+.++ .+|++.+
T Consensus 192 ~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 192 EEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred HHHHHHHHHHHHhcCceeeE
Confidence 333334443 4677643
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.93 E-value=0.0071 Score=50.39 Aligned_cols=146 Identities=22% Similarity=0.231 Sum_probs=91.8
Q ss_pred cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (220)
Q Consensus 37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (220)
.+++.+..++.++.. ...|.+|||+.||.|-=+..+|.. + ..|++.|. ..-+..++.|+...+.
T Consensus 68 ~vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-- 135 (283)
T PF01189_consen 68 YVQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-- 135 (283)
T ss_dssp EEHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred Eeccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--
Confidence 356666666555542 337788999999999888888865 2 47999998 5688999999988775
Q ss_pred ccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHh
Q 027659 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFAL 169 (220)
Q Consensus 113 ~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~ 169 (220)
.++.....|-..... ......||.|+.-.+ =. ++ ....+++...++
T Consensus 136 ----------~~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 204 (283)
T PF01189_consen 136 ----------FNVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL 204 (283)
T ss_dssp ----------SSEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred ----------ceEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence 466666533322211 112346999988554 11 11 123577778888
Q ss_pred h----CCCcEEEEEEEecCc----hHHHHHHHHHhcCCeEEEeeC
Q 027659 170 S----GPKTTILLGYEIRST----SVHEQMLQMWKSNFNVKLVPK 206 (220)
Q Consensus 170 l----~~~g~~~i~~~~r~~----~~~~~f~~~~~~~f~v~~v~~ 206 (220)
+ +|||+++.+...-.+ .+.+.|++.. ..|++..+..
T Consensus 205 ~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~~ 248 (283)
T PF01189_consen 205 LNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIPL 248 (283)
T ss_dssp EHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCES
T ss_pred hcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEeccc
Confidence 9 999998877643322 2345555432 2455554443
No 251
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.059 Score=44.29 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=65.5
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
+...|.+|||-|+|+|.++.++++.- .+++-.|+.+ -.+.+.+-.+..+. .+++.+..-|.....
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSG 170 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCC
Confidence 34578999999999999999999863 3688889843 33444445555554 578888887765543
Q ss_pred CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
... ....+|.|+.--+ ..-..+-.+...|+.+|.-++++
T Consensus 171 F~~-ks~~aDaVFLDlP----aPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 171 FLI-KSLKADAVFLDLP----APWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred ccc-cccccceEEEcCC----ChhhhhhhhHHHhhhcCceEEec
Confidence 221 2467888886544 11122233334666666444433
No 252
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.87 E-value=0.0096 Score=48.89 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=80.5
Q ss_pred CCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 60 PSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 60 ~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..++.|+.|+=+| ---+.|+++|.-| .+|..+|+++ .+....+-++.-+. .+++...+|..++.
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------------~~ie~~~~Dlr~pl 214 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------------NNIEAFVFDLRNPL 214 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------------cchhheeehhcccC
Confidence 3677899999999 5678888888665 3599999976 88888888887765 46888888877664
Q ss_pred CccccCCCccEEEEecCCCCCChHHHHHHHHHhhC-CC--cEEEEEEEecCchHHHHHHHHH
Q 027659 137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSG-PK--TTILLGYEIRSTSVHEQMLQMW 195 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~-~~--g~~~i~~~~r~~~~~~~f~~~~ 195 (220)
+. ...++||+.+.-+++-...+..++..=-..|+ +| |.+.++....+-..+..+.+.+
T Consensus 215 pe-~~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~l 275 (354)
T COG1568 215 PE-DLKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRIL 275 (354)
T ss_pred hH-HHHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHH
Confidence 22 23579999887666555555666554444454 44 4444544333322344444433
No 253
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.75 E-value=0.0069 Score=52.14 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=69.9
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHH-HHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLL-KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~-~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
...+..++++|||.|-+....+... +.+++.|+ +.-+... ..+...+ + ..+..+...+... .
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l-----------~~k~~~~~~~~~~---~ 172 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-L-----------DNKCNFVVADFGK---M 172 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-h-----------hhhcceehhhhhc---C
Confidence 3455689999999999999999765 67999998 3322222 2222222 1 1122333322222 2
Q ss_pred cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659 139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILL 178 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i 178 (220)
+..+..||.+-+.+. -+......+...+.+.++|||.+..
T Consensus 173 ~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 173 PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 345789999999999 7777799999999999999998775
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.70 E-value=0.00024 Score=49.99 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=36.0
Q ss_pred EEeCCcccHHHHHHHHh---C--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc-
Q 027659 69 IELGAGCGVAGFGMALL---G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV- 141 (220)
Q Consensus 69 LELGcG~G~~~l~la~~---g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~- 141 (220)
||+|+..|..++.+++. + .+++++|..+..+..+++++..+. ..++++... +... ++..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-----------~~~~~~~~g---~s~~~l~~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-----------SDRVEFIQG---DSPDFLPSLP 66 (106)
T ss_dssp --------------------------EEEESS------------GGG------------BTEEEEES----THHHHHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-----------CCeEEEEEc---CcHHHHHHcC
Confidence 79999999888777743 2 269999973323344455544433 346777773 3321 1112
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEE
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILL 178 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i 178 (220)
.++||+|+.-..+..+....-+..+...|+|||.+++
T Consensus 67 ~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 67 DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3789999865543334455566677777899998776
No 255
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.64 E-value=0.0082 Score=53.12 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=72.5
Q ss_pred CcEEEeCCcccHHHHHHHHhCC---eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
..|+|..+|.|-.+.++..... .|+-++.+..+..+- .-++ --..+||.+..+ .-+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIy----dRGL---------------IG~yhDWCE~fs--TYP 425 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIY----DRGL---------------IGVYHDWCEAFS--TYP 425 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhh----hccc---------------chhccchhhccC--CCC
Confidence 3699999999966666655432 244443333333321 1222 334678876643 357
Q ss_pred CCccEEEEecC---CC-CCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEeeCC
Q 027659 143 PPFDYIIGTDV---YA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKA 207 (220)
Q Consensus 143 ~~fD~V~~~d~---y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~~~ 207 (220)
.+||+|-++.+ |. .-.+..++-.+.+.|+|+|.++|-.. .++..+..+.++. .+++..+..+
T Consensus 426 RTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 426 RTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred cchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHHHHHhCcceEEEEecC
Confidence 89999999988 32 33578999999999999999998322 2233343333332 4555555443
No 256
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.51 E-value=0.0094 Score=49.45 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=34.3
Q ss_pred cEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHH
Q 027659 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (220)
+++||-||.|..++.+...|.+ |.++|. +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 6999999999999999999998 778998 568888877753
No 257
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.38 E-value=0.16 Score=44.02 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=89.5
Q ss_pred CeEEEEEeCCCCcc-ccccccchHH-HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhh
Q 027659 20 GHQLQFSQDPNSKH-LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV 97 (220)
Q Consensus 20 ~~~~~i~~~~~~~~-~g~~~W~~s~-~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~ 97 (220)
...++++..|.... .-..-|+++- +|.+++... ...+ +||=|+=.-|.++..++..+.. ..+|---+
T Consensus 8 ~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~---------~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~ 76 (378)
T PRK15001 8 FRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDT---------EIRG-PVLILNDAFGALSCALAEHKPY-SIGDSYIS 76 (378)
T ss_pred CceeEEEECCCCCCcCcccccccHHHHHHHHHhhc---------ccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHHH
Confidence 37788888886544 4589999986 334454432 1223 7999999999999999965543 34674334
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
-..++.|++.|+.. ...++.... .+..++.+|+|+.--+=.....+.++..+...+.+++.++
T Consensus 77 ~~~~~~n~~~n~~~----------~~~~~~~~~-------~~~~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 77 ELATRENLRLNGID----------ESSVKFLDS-------TADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred HHHHHHHHHHcCCC----------cccceeecc-------cccccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 46778899999762 122333321 1113567999885544223446677788888899999987
Q ss_pred EEEEecC
Q 027659 178 LGYEIRS 184 (220)
Q Consensus 178 i~~~~r~ 184 (220)
.+.+.+.
T Consensus 140 ~g~~~k~ 146 (378)
T PRK15001 140 AGAKARD 146 (378)
T ss_pred EEEecCC
Confidence 7666554
No 258
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.0082 Score=50.33 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=60.7
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..|.+||=+|||+ |++++..|+ .|+ +|+++|. +.-++.+++ + +.. .+...... .....+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~------------~~~~~~~~-~~~~~~ 230 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT------------VTDPSSHK-SSPQEL 230 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe------------EEeecccc-ccHHHH
Confidence 4688999999998 999999997 477 5999998 568888876 2 210 11111000 000100
Q ss_pred ----c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 139 ----K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ----~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
. .....||+.+-+ +-.+.-+++.-..++.+|.+.++.
T Consensus 231 ~~~v~~~~g~~~~d~~~dC-----sG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 231 AELVEKALGKKQPDVTFDC-----SGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHHhhccccCCCeEEEc-----cCchHHHHHHHHHhccCCEEEEec
Confidence 0 112346666543 446677777788899999987775
No 259
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.33 E-value=0.0094 Score=47.73 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=50.3
Q ss_pred CCCcEEEeCCcccH-HHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCCCC--
Q 027659 64 KGKRVIELGAGCGV-AGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDH-- 137 (220)
Q Consensus 64 ~~~~vLELGcG~G~-~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-- 137 (220)
++.++||+|.|.-. ..+.-. ..|-+-+++|+ +.++..++.++..| ++ ...|+...- .+...
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----------~~~I~lr~q--k~~~~if 144 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----------ERAIRLRRQ--KDSDAIF 144 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----------hhheeEEec--cCccccc
Confidence 56689999888532 222212 34678999999 56999999999998 44 233444321 11111
Q ss_pred --ccccCCCccEEEEecCCCC
Q 027659 138 --IKAVAPPFDYIIGTDVYAE 156 (220)
Q Consensus 138 --~~~~~~~fD~V~~~d~y~~ 156 (220)
.....+.||+++||++|+.
T Consensus 145 ~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 145 NGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cccccccceeeeEecCCCcch
Confidence 1112578999999999443
No 260
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.32 E-value=0.0076 Score=50.89 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=57.3
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHH-------HHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~ 134 (220)
..|+-|.|=-.|||.+-+.+|..|+-|+++|++. ++. .++.|.++.+.. ..-+.+...|..+
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----------~~fldvl~~D~sn 276 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----------SQFLDVLTADFSN 276 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc----------chhhheeeecccC
Confidence 4688999999999999999999999999999854 554 345555555531 2234555656555
Q ss_pred CCCccccCCCccEEEEecCCC
Q 027659 135 EDHIKAVAPPFDYIIGTDVYA 155 (220)
Q Consensus 135 ~~~~~~~~~~fD~V~~~d~y~ 155 (220)
..-. ....||.|+|-++|.
T Consensus 277 ~~~r--sn~~fDaIvcDPPYG 295 (421)
T KOG2671|consen 277 PPLR--SNLKFDAIVCDPPYG 295 (421)
T ss_pred cchh--hcceeeEEEeCCCcc
Confidence 4322 256899999888765
No 261
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.021 Score=48.79 Aligned_cols=101 Identities=21% Similarity=0.297 Sum_probs=70.7
Q ss_pred CCcEEEeCCcccHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
..+|+|-=||+|+=|+-.|. .+. +|++-|+ |++++++++|++.|.. .+......|-.. -+...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN~--lm~~~ 118 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDANA--LLHEL 118 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHHH--HHHhc
Confidence 67899999999999999986 455 7999999 7799999999999932 233333321111 01122
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
...||+|=. |+|.. ..++++...+..+.+|.+.++.+.
T Consensus 119 ~~~fd~IDi-DPFGS--PaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 119 HRAFDVIDI-DPFGS--PAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CCCccEEec-CCCCC--CchHHHHHHHHhhcCCEEEEEecc
Confidence 468898732 22432 457888888888889988887653
No 262
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.21 E-value=0.06 Score=46.09 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCcEEEeCCcccHHHHHHHHhC-C-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g-~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
-.+||=||-|-|+..-.+.+.- . +++.+|. |+|++.++.|.-.... +.++-..+++++..-|-.+. +...
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-----N~~sf~dpRv~Vv~dDAf~w--lr~a 362 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-----NQGSFSDPRVTVVNDDAFQW--LRTA 362 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-----ccCCccCCeeEEEeccHHHH--HHhh
Confidence 4579999999999998888764 3 6999998 7899999976644322 11112345777776433222 1123
Q ss_pred CCCccEEEEecC-CCCCC-----hHHHHHHHHHhhCCCcEEEEEE
Q 027659 142 APPFDYIIGTDV-YAEHL-----LEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~-----~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.+.||.||.--+ -.... -.++-..+++.|+++|.+++-.
T Consensus 363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 468999996544 22222 3456667778899999988743
No 263
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.0084 Score=50.84 Aligned_cols=105 Identities=13% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHHhCC---eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED- 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~- 136 (220)
.++..++|||+|.|.|....++-..-. .++.++.+.++...-.-+..|. .....+|....
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----------------~t~~td~r~s~v 173 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----------------STEKTDWRASDV 173 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----------------ccccCCCCCCcc
Confidence 567778899999999876555543322 3566665444444444444432 22224443322
Q ss_pred -----CccccCCCccEEEEecC-CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 137 -----HIKAVAPPFDYIIGTDV-YAEH---LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 137 -----~~~~~~~~fD~V~~~d~-y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
+++ ....|++|+..+- .... .+...++.+..++.|||.++|+.+.
T Consensus 174 t~dRl~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 174 TEDRLSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred chhccCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 111 2356888877775 3332 2445777788889999999998754
No 264
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.98 E-value=0.081 Score=39.25 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=60.9
Q ss_pred eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-cC-CCccEEEEecCCCCCC------
Q 027659 88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VA-PPFDYIIGTDVYAEHL------ 158 (220)
Q Consensus 88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~-~~fD~V~~~d~y~~~~------ 158 (220)
+|++.|+ +++++.+++.++.++. ..++++..- .-+.+.. .+ +++|.++-|--|-+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~---sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILD---SHENLDEYIPEGPVDAAIFNLGYLPGGDKSITT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES----GGGGGGT--S--EEEEEEEESB-CTS-TTSB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEEC---CHHHHHhhCccCCcCEEEEECCcCCCCCCCCCc
Confidence 5899998 6799999999998876 346777762 2222221 23 3799998875454321
Q ss_pred -hH---HHHHHHHHhhCCCcEEEEEEEecCchH------HHHHHHHHh-cCCeEEEee
Q 027659 159 -LE---PLLQTIFALSGPKTTILLGYEIRSTSV------HEQMLQMWK-SNFNVKLVP 205 (220)
Q Consensus 159 -~~---~l~~~l~~~l~~~g~~~i~~~~r~~~~------~~~f~~~~~-~~f~v~~v~ 205 (220)
.+ .-++.+.++|+|||.+.++....+++. ...|++.+. +.|.|....
T Consensus 67 ~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 67 KPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred CcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 22 344455566899998887765544432 334555443 467776553
No 265
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.94 E-value=0.013 Score=41.18 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCcEEEeCCcccHHHHHHHHhCCeEEEecc
Q 027659 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ 94 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~ 94 (220)
....+|||||+|++--.|.+-|.+=.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 446999999999999999999999889996
No 266
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.94 E-value=0.015 Score=50.37 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=54.4
Q ss_pred cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhh
Q 027659 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (220)
Q Consensus 33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~ 110 (220)
.+|-.-|.+-+..-+--.+. -...|..|.|+-||.|-.++.+++.+..|++-|. +++++.++.|+..|..
T Consensus 226 DfskVYWnsRL~~Eherlsg--------~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 226 DFSKVYWNSRLSHEHERLSG--------LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred ecceEEeeccchhHHHHHhh--------ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 45666798544333322221 1225678999999999999999999999999997 8999999999999987
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.93 E-value=0.1 Score=47.08 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=34.0
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~ 103 (220)
...+.+|+=+|||. |+.++..|+ +|++|+++|. ++.++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34688999999998 999998886 5999999998 556665544
No 268
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.83 E-value=0.05 Score=46.11 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=64.0
Q ss_pred CcEEEeCCcccHHHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
...+|+|.|.|.+.-.+...-.+|-+++. +.+++.+. +.. . .|.....|--.. ..
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~---------------gV~~v~gdmfq~------~P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-P---------------GVEHVAGDMFQD------TP 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-C---------------Ccceeccccccc------CC
Confidence 57999999999988888776666777775 44444333 322 1 133333222111 23
Q ss_pred CccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 144 PFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 144 ~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
+-|+|+.--+ ++ +++..++++.+++.|+|+|.+++...
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4579999998 44 55688999999999999999998865
No 269
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.078 Score=44.44 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHH--HHHHHHHHhhhhh----------------ccCCC----CC-
Q 027659 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP--LLKRNVEWNTSRI----------------SQMNP----GS- 119 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~--~~~~n~~~n~~~~----------------~~~~~----~~- 119 (220)
...+||==|||.|.++.-+|..|.++-+-+.+. |+= ....|.-.+.... .|.+| +.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 456899999999999999999999988887754 332 2222222211110 01111 00
Q ss_pred -----CCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659 120 -----DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 120 -----~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
......+....|+.+........+.||+|+.+-- =-...+-+.+++|..+|+|||+-+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 0111122233333222222222357999987632 223457789999999999999765
No 270
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.45 E-value=0.012 Score=48.85 Aligned_cols=81 Identities=20% Similarity=0.137 Sum_probs=57.2
Q ss_pred CCCcEEEeCCcccHHHH-HHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l-~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
.+..|.||=+|.|..++ .+-..||+ |.+.|. |.+++.+++|++.|+.. .++.....| ...+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-----------~r~~i~~gd----~R~~~ 258 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-----------DRCRITEGD----NRNPK 258 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-----------HHHHhhhcc----ccccC
Confidence 45689999999999999 77788987 999998 77999999999999762 233333322 12223
Q ss_pred cCCCccEEEEecC-CCCCCh
Q 027659 141 VAPPFDYIIGTDV-YAEHLL 159 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~~~~~ 159 (220)
+....|-|...-. -....+
T Consensus 259 ~~~~AdrVnLGLlPSse~~W 278 (351)
T KOG1227|consen 259 PRLRADRVNLGLLPSSEQGW 278 (351)
T ss_pred ccccchheeeccccccccch
Confidence 4566777776555 444444
No 271
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.38 E-value=0.15 Score=40.29 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=63.7
Q ss_pred CcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc--
Q 027659 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-- 140 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-- 140 (220)
-.+.|||||.|-+-+.++.+-.+ +++.++ ..+-+..++.+..-... +......++.+....--.. ++.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~-----~a~~~~~ni~vlr~namk~--lpn~f 134 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT-----SAEGQYPNISVLRTNAMKF--LPNFF 134 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc-----ccccccccceeeeccchhh--ccchh
Confidence 46999999999888888877664 788887 44777777776654321 1111123444443211111 110
Q ss_pred --cCCCccEEEEecC-CCCC------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 141 --VAPPFDYIIGTDV-YAEH------LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 141 --~~~~fD~V~~~d~-y~~~------~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
..-.-++.+--|+ +... .-..++.....+|++||.+|.....
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 0112244444555 4322 1345777788889999999986543
No 272
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.29 E-value=0.046 Score=43.19 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHH
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~ 103 (220)
-.-|.+.|.... ..+|..|||--||+|..++++.++|.+.+++|+ ++.++.+++
T Consensus 177 P~~l~~~lI~~~--------t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS--------TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH--------S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh--------hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 455666665542 336789999999999999999999999999999 557777653
No 273
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.28 E-value=0.12 Score=39.45 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=75.8
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHH-HHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~l-a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (220)
++..|++.+.+.. ..+.+|+=|||=+-...+.- ...+.++++.|++. +.. ..
T Consensus 11 T~~~l~~~l~~~~---------~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~--RF~-----~~----------- 63 (162)
T PF10237_consen 11 TAEFLARELLDGA---------LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR--RFE-----QF----------- 63 (162)
T ss_pred HHHHHHHHHHHhc---------CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc--hHH-----hc-----------
Confidence 4667777777532 24578999988764444433 11244699999865 111 11
Q ss_pred CCCCceEEEEeeeCCCCCcc-ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 120 DLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 120 ~~~~~v~~~~ldw~~~~~~~-~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
.++ .+.-.|...+..++ ...++||+|++-++ ...+.......+++.++++++.++++...+.
T Consensus 64 --~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~ 127 (162)
T PF10237_consen 64 --GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM 127 (162)
T ss_pred --CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH
Confidence 123 56666666665543 23579999999988 6677778889999999999999988776543
No 274
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.05 E-value=0.2 Score=39.04 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=63.3
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhC-C--eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE-EeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLG-C--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g-~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~ldw~~~~~~ 138 (220)
.++.+|||+||-.|..+..+-++. . .|.++|+-...+. .-+.+. ..|..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~----------------------~Ga~~i~~~dvtdp~~~ 125 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP----------------------EGATIIQGNDVTDPETY 125 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC----------------------CCcccccccccCCHHHH
Confidence 367899999999999999998763 3 4999996221100 001111 1133333210
Q ss_pred -----cccCCCccEEEEecCCC-----CCChHHHHHHHHHh-------hCCCcEEEEEEEecCchHHHHHHHHHhcCCe
Q 027659 139 -----KAVAPPFDYIIGTDVYA-----EHLLEPLLQTIFAL-------SGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 200 (220)
Q Consensus 139 -----~~~~~~fD~V~~~d~y~-----~~~~~~l~~~l~~~-------l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~ 200 (220)
..+....|+|++-...+ .-++..++..+..+ +.|+|.++.-.- ..+....|...+.+.|+
T Consensus 126 ~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w--~g~e~~~l~r~l~~~f~ 202 (232)
T KOG4589|consen 126 RKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW--DGSEEALLQRRLQAVFT 202 (232)
T ss_pred HHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe--cCCchHHHHHHHHHHhh
Confidence 11356788887633222 23344444444332 579998776433 33334566666666553
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=94.99 E-value=0.085 Score=43.95 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~ 107 (220)
..+|..|||--||+|..++++.++|-+.+++|+ ++.++.+++.+..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 347889999999999999999999999999998 6688888887753
No 276
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.83 E-value=0.096 Score=43.08 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=60.4
Q ss_pred cEEEeCCccc--HHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 67 RVIELGAGCG--VAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 67 ~vLELGcG~G--~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
..||||||.- -..-..|+. .++|+-+|. |-++...+.-+..|. .....+...|..++..+..
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~iL~ 138 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAILA 138 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHHHC
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHHhc
Confidence 6999999952 123344433 578999998 557777766555442 1347888877776653211
Q ss_pred ---cC-----CCccEEEEecC-CC---CCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659 141 ---VA-----PPFDYIIGTDV-YA---EHLLEPLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 141 ---~~-----~~fD~V~~~d~-y~---~~~~~~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
.. .+.=.|+...+ ++ .+....++..+...|.||..+.|++....
T Consensus 139 ~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 139 HPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp SHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 11 22335566666 33 24688999999999999999999987654
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.76 E-value=0.17 Score=40.89 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=42.3
Q ss_pred CcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659 66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 144 (220)
.+|||.-+|.|.-++.+|..|++|++++.+. +-.+++.-++....... .......++++...|-.+. +......
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~---~~~~~~~ri~l~~~d~~~~--L~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPE---LLAEAMRRIQLIHGDALEY--LRQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTT---THHHHHHHEEEEES-CCCH--CCCHSS-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcH---hHHHHHhCCEEEcCCHHHH--HhhcCCC
Confidence 3899999999999999999999999999854 33444433332211000 0000013567766443332 2234679
Q ss_pred ccEEEEecCCCC
Q 027659 145 FDYIIGTDVYAE 156 (220)
Q Consensus 145 fD~V~~~d~y~~ 156 (220)
||+|..-++|..
T Consensus 152 ~DVVY~DPMFp~ 163 (234)
T PF04445_consen 152 FDVVYFDPMFPE 163 (234)
T ss_dssp -SEEEE--S---
T ss_pred CCEEEECCCCCC
Confidence 999998666543
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.72 E-value=0.64 Score=37.73 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred eecCeEEEEEeCCCCccccccccch-HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hCCe--EEEe
Q 027659 17 EVLGHQLQFSQDPNSKHLGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN--VITT 92 (220)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~g~~~W~~-s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g~~--v~~~ 92 (220)
.+.|.+=.+.+.+ ....-.++|.. -.-||.-|.--.. +-....|.+||=||+++|..---.+. .|.+ |+++
T Consensus 113 ~vYgEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvd----nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAV 187 (317)
T KOG1596|consen 113 SVYGEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVD----NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAV 187 (317)
T ss_pred cccCceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCcc----ceeecCCceEEEeeccCCceeehhhcccCCCceEEEE
Confidence 3444443333444 33566789965 2234444442211 12445789999999999864443443 4554 8888
Q ss_pred cchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhC
Q 027659 93 DQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSG 171 (220)
Q Consensus 93 D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~ 171 (220)
+.++ +=+.+ -|++.- ..||-.+.-|..-+......-...|+|++ |+-.++...-+.-....+|+
T Consensus 188 Efs~rsGRdL-~nmAkk-------------RtNiiPIiEDArhP~KYRmlVgmVDvIFa-Dvaqpdq~RivaLNA~~FLk 252 (317)
T KOG1596|consen 188 EFSHRSGRDL-INMAKK-------------RTNIIPIIEDARHPAKYRMLVGMVDVIFA-DVAQPDQARIVALNAQYFLK 252 (317)
T ss_pred EecccchHHH-HHHhhc-------------cCCceeeeccCCCchheeeeeeeEEEEec-cCCCchhhhhhhhhhhhhhc
Confidence 8743 21111 111111 23555544333222221112335566653 44334445556666677899
Q ss_pred CCcEEEEEEEec
Q 027659 172 PKTTILLGYEIR 183 (220)
Q Consensus 172 ~~g~~~i~~~~r 183 (220)
++|.++++.+.-
T Consensus 253 ~gGhfvisikan 264 (317)
T KOG1596|consen 253 NGGHFVISIKAN 264 (317)
T ss_pred cCCeEEEEEecc
Confidence 999999987643
No 279
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.71 E-value=0.16 Score=43.38 Aligned_cols=93 Identities=27% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..+|++|+=.|+|- |..++.+|+ .|++|+++|.+ +-++.+++--+ . .+ .++.+.+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-----------------d-~~--i~~~~~~~~ 223 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-----------------D-HV--INSSDSDAL 223 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-----------------c-EE--EEcCCchhh
Confidence 34688999999983 667777776 79999999984 45555543211 1 11 222222222
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
....+.||+|+..-. ...+....++|+++|++.+..
T Consensus 224 ~~~~~~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 224 EAVKEIADAIIDTVG------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred HHhHhhCcEEEECCC------hhhHHHHHHHHhcCCEEEEEC
Confidence 222334999986533 333444455677888776653
No 280
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.70 E-value=0.04 Score=46.24 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.4
Q ss_pred cEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHH
Q 027659 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (220)
+++||-||.|.+++.+.+.|.+ |.++|+ +.+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 6999999999999999999987 778998 568888877754
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.58 E-value=0.35 Score=38.27 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCCcEEEeCCcccHHHHHHHHh------CCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~------g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
+...|+|+|.=.|--.+..|.. ..+|+++|+. .... +..++...+ ..+|++...|..+.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~-----------~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPM-----------SPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccc-----------cCceEEEECCCCCHH
Confidence 5679999999887777766642 2579999982 2111 111111111 368999997766554
Q ss_pred Ccc---ccCCCcc-EEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 137 HIK---AVAPPFD-YIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 137 ~~~---~~~~~fD-~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
... ......+ +++.-|. +..+....-++....++++|+.+++..
T Consensus 99 ~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp HHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 221 1111222 3555666 777777888888999999999888753
No 282
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.50 E-value=0.16 Score=41.38 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
..+|+|||||.=-+++..... ++.+++.|+ ..+++.+..-+..-+. +..+...|.-.. .+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~ 168 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP 168 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence 568999999987777766654 457999999 5699988877665543 455555443322 13
Q ss_pred CCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 142 APPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
....|+.+.-=+ ... ..--.-++.+..+ ..-.++++++.|+-
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL 213 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSL 213 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES---
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEecccccc
Confidence 556888886543 100 0001112222222 34577888887764
No 283
>PRK13699 putative methylase; Provisional
Probab=94.44 E-value=0.16 Score=40.93 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=39.1
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
.+|..|||--||+|..++++.+.|.+.+++|+ ++..+.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998 56777777766543
No 284
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.19 E-value=1.8 Score=37.86 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCCCCcEEEeCCcccHHHHHHHH-hC--CeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~-~g--~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+|.||||+-|-.|-=+..+|. .. ..|++.|.. .-+..++.|+..-+. .+..+..+|-..+..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~ 306 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPE 306 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccc
Confidence 34788999999998655555544 33 358999985 488889999988775 344555554433221
Q ss_pred ccccCCCccEEEEec-C-C-----CCC----------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 138 IKAVAPPFDYIIGTD-V-Y-----AEH----------------LLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d-~-y-----~~~----------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
-. ..++||-|+.-. | - -+. ....|+.....++++||+++.+...-..
T Consensus 307 ~~-~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 307 KE-FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred cc-cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 11 234899887533 2 1 111 1345666667778999998877665444
No 285
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.14 E-value=0.72 Score=40.14 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCcEEEeCCcccHHHHHHH
Q 027659 65 GKRVIELGAGCGVAGFGMA 83 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la 83 (220)
..+|+|+|||+|..++.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999998887764
No 286
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.13 E-value=0.045 Score=48.40 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659 64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~ 138 (220)
++.+|||-=|+||+-+|-.|+. |. +|++-|. +.+++..++|++.|+. ...++....|....- ..
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLMYEH 177 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHHHhc
Confidence 5678999999999999999975 33 5999998 5699999999999965 233333332221110 11
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
+.....||+|=. |+|... ..+++...+.++.||.++++.+
T Consensus 178 ~~~~~~FDvIDL-DPyGs~--s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 178 PMVAKFFDVIDL-DPYGSP--SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccccccceEec-CCCCCc--cHHHHHHHHHhhcCCEEEEEec
Confidence 123478998843 335433 4677777788889999988764
No 287
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.52 Score=35.33 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=36.5
Q ss_pred CcEEEeCCcccHHHHHHHHhCC-eEEEecchh-hHHHHHHHHHHhhh
Q 027659 66 KRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTS 110 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~-~l~~~~~n~~~n~~ 110 (220)
.+.+|||+|-|.+-+.+++.|. .-++++++. .+...+...-..+.
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc
Confidence 3799999999999999999995 588999855 77777776655554
No 288
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.12 Score=39.69 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=60.0
Q ss_pred EEEEeeeCCCCCccc-cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEE
Q 027659 126 QAVELDWGNEDHIKA-VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 203 (220)
Q Consensus 126 ~~~~ldw~~~~~~~~-~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~ 203 (220)
+|.-.|...+..++. ...+||+|++-++ ...+-+.+-..+++.+.++.-.++++...+-.+.....+...+-.|..+
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe- 194 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE- 194 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence 667777777665542 3568999999999 6777788888899999999889988876654433333333333345443
Q ss_pred eeCCCCCcccCCC
Q 027659 204 VPKAKESTMWGNP 216 (220)
Q Consensus 204 v~~~~~~~~~~~~ 216 (220)
+...+...|++.
T Consensus 195 -H~~nLaNeF~cy 206 (217)
T KOG3350|consen 195 -HERNLANEFRCY 206 (217)
T ss_pred -hhcccccceeEE
Confidence 455666666654
No 289
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.79 E-value=0.27 Score=41.42 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=44.1
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHH
Q 027659 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 107 (220)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~ 107 (220)
++|.+.+.+.. ...+|..++|--+|.|--+..+++. ..+|++.|. ++++..+++.++.
T Consensus 6 pVll~Evl~~L-------~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 6 SVLLDEVVEGL-------NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred chhHHHHHHhc-------CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 45555555543 2235678999999999999988865 367999998 6799999887764
No 290
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.24 Score=42.13 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHH
Q 027659 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (220)
..+++||-||.|-+++.+...|.+ +.+.|+ +.+++..+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 358999999999999999999988 667898 668888777754
No 291
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.58 E-value=0.067 Score=44.17 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=66.1
Q ss_pred cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhh
Q 027659 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR 111 (220)
Q Consensus 33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~ 111 (220)
.+-...||-..-+.+.. -.|..++|.|||.|-....- -..-+++.|... .+.-+++. +
T Consensus 27 ~tr~~~Wp~v~qfl~~~-------------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~---~--- 85 (293)
T KOG1331|consen 27 ATRAAPWPMVRQFLDSQ-------------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS---G--- 85 (293)
T ss_pred ccccCccHHHHHHHhcc-------------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC---C---
Confidence 35567787555443322 24789999999998432211 112477888743 33333221 1
Q ss_pred hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC---hHHHHHHHHHhhCCCcEEEEE
Q 027659 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---LEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---~~~l~~~l~~~l~~~g~~~i~ 179 (220)
.. .... .+...++.....||.+++..+ ++-.. -...++.+.+.++|||..++-
T Consensus 86 -----------~~-~~~~---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 86 -----------GD-NVCR---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred -----------Cc-eeeh---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 11 1122 223334455789999999888 66443 456788888889999986654
No 292
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.39 E-value=1 Score=38.49 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=22.2
Q ss_pred CCCcEEEeCCcccHHHHHHHHh------------C------CeEEEecch
Q 027659 64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQI 95 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~------------g------~~v~~~D~~ 95 (220)
+.-+|+|+||-.|..++.+... + ..|+..|+|
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP 65 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLP 65 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-T
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC
Confidence 4468999999999999987643 1 268899984
No 293
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.04 E-value=1.9 Score=35.16 Aligned_cols=139 Identities=12% Similarity=0.124 Sum_probs=91.4
Q ss_pred cccchH---HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659 37 TVWDAS---VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (220)
Q Consensus 37 ~~W~~s---~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (220)
++|... ..|..|+..-. ....|.+ |..=||+-.++-.+.+..-++.+++. |+=...++.|...
T Consensus 66 RL~~a~~lpa~l~~yl~~i~-------~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~----- 132 (279)
T COG2961 66 RLWQAADLPAELEPYLDAVR-------QLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG----- 132 (279)
T ss_pred HHHhcCCchHHHHHHHHHHH-------HhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-----
Confidence 466553 35556665421 2223333 88888887777777776778999998 7766777777662
Q ss_pred ccCCCCCCCCCceEEEEee-eCCCCCccccCCCccEEEEecCC-CCCChHHHHHHHHHhhC--CCcEEEEEEEecCchHH
Q 027659 113 SQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVY-AEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVH 188 (220)
Q Consensus 113 ~~~~~~~~~~~~v~~~~ld-w~~~~~~~~~~~~fD~V~~~d~y-~~~~~~~l~~~l~~~l~--~~g~~~i~~~~r~~~~~ 188 (220)
..++.+...| |......-.+.++=-+|+.-++| ....++.+++++.+.++ ++|+..|=++.......
T Consensus 133 ---------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~ 203 (279)
T COG2961 133 ---------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQI 203 (279)
T ss_pred ---------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHH
Confidence 3467777644 11111111123445667766664 56679999999999886 68888888888777677
Q ss_pred HHHHHHHhc
Q 027659 189 EQMLQMWKS 197 (220)
Q Consensus 189 ~~f~~~~~~ 197 (220)
+.|++.++.
T Consensus 204 ~~f~~~L~~ 212 (279)
T COG2961 204 RRFLRALEA 212 (279)
T ss_pred HHHHHHHhh
Confidence 899888874
No 294
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.00 E-value=0.27 Score=35.69 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=29.5
Q ss_pred HHHHHHhhccccCCCCCCCCCCCcEEEeCCcc-cHHHHHHHHhCCeEEEecchh
Q 027659 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQIE 96 (220)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~-G~~~l~la~~g~~v~~~D~~~ 96 (220)
-+++|+..+. ...+|+|+|-|. --.+..|+..|..|++||+.+
T Consensus 3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4678887542 334999999997 567788888999999999844
No 295
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.95 E-value=3.3 Score=35.65 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=69.7
Q ss_pred CCCCcEEEeCCcccHHHHHHHHhCC------eEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMALLGC------NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~g~------~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
..|.+|||+-+-.|-=++.+.+... .|++-|.+. =+..+..-+..-. ..++.+...+-...
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------------~~~~~v~~~~~~~~ 221 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------------SPNLLVTNHDASLF 221 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------------Ccceeeecccceec
Confidence 4678999999999887766655422 588999733 2333322221110 11222222222221
Q ss_pred CCc------cccCCCccEEEEecC-CCCCC-----------------------hHHHHHHHHHhhCCCcEEEEEEE----
Q 027659 136 DHI------KAVAPPFDYIIGTDV-YAEHL-----------------------LEPLLQTIFALSGPKTTILLGYE---- 181 (220)
Q Consensus 136 ~~~------~~~~~~fD~V~~~d~-y~~~~-----------------------~~~l~~~l~~~l~~~g~~~i~~~---- 181 (220)
... +.....||-|++--+ -.+.. .-.++..-.++|++||.++.+..
T Consensus 222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 111 112457888876432 11110 11355556678899999888764
Q ss_pred ecCchHHHHHHHHHhcCCeEEEe
Q 027659 182 IRSTSVHEQMLQMWKSNFNVKLV 204 (220)
Q Consensus 182 ~r~~~~~~~f~~~~~~~f~v~~v 204 (220)
.++..+.+..++.+...+.+..+
T Consensus 302 ieNEaVV~~~L~~~~~~~~lv~~ 324 (375)
T KOG2198|consen 302 IENEAVVQEALQKVGGAVELVDV 324 (375)
T ss_pred hhhHHHHHHHHHHhcCcccceee
Confidence 34444566666666655655444
No 296
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.80 E-value=0.11 Score=43.76 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=46.9
Q ss_pred EEEeCCcccHHHHHHH---H-hCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Ccc
Q 027659 68 VIELGAGCGVAGFGMA---L-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIK 139 (220)
Q Consensus 68 vLELGcG~G~~~l~la---~-~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~~ 139 (220)
=+|||.|+ .++..+ . .+..-++||+.+ .++.++.|+.+|++ ...+.++...--... ...
T Consensus 106 GiDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~ 172 (419)
T KOG2912|consen 106 GIDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALK 172 (419)
T ss_pred eeeccCch--hhhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhc
Confidence 47887775 333333 2 244688999966 89999999999987 344544442111100 011
Q ss_pred -ccCCCccEEEEecC-CCC
Q 027659 140 -AVAPPFDYIIGTDV-YAE 156 (220)
Q Consensus 140 -~~~~~fD~V~~~d~-y~~ 156 (220)
..+..||+.+|+++ |..
T Consensus 173 ~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 173 EESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred cCccceeeEEecCCchhhc
Confidence 12456999999999 653
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.73 E-value=1.2 Score=37.81 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=53.0
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..|.+||=.|||. |+.++.+|+ .|+ +|+++|. ++-++.+++ .+.. .-+....-++. ..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-----------~vi~~~~~~~~---~~ 229 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-----------KLVNPQNDDLD---HY 229 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-----------EEecCCcccHH---HH
Confidence 3678899899976 777777775 477 5889997 555555543 1110 00000000010 11
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
....+.+|+|+-+-- ....+....++++++|.+++..
T Consensus 230 ~~~~g~~D~vid~~G-----~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 230 KAEKGYFDVSFEVSG-----HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred hccCCCCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEEc
Confidence 111235898874311 1235566667889999887654
No 298
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.55 E-value=0.94 Score=40.27 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=62.8
Q ss_pred CcEEEeCCcccHHHHHHHHhCCe-EEEecchh-hHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
-++|.+|||.--+..-+-+-|.+ |+.+|++. ++..+. +|+.. .....+...|... ....+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--------------~~~~~~~~~d~~~---l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--------------RPEMQMVEMDMDQ---LVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--------------CcceEEEEecchh---ccCCC
Confidence 48999999999888888888886 99999955 555543 33322 2345555544432 33356
Q ss_pred CCccEEEEecC-----------CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659 143 PPFDYIIGTDV-----------YAEHLLEPLLQTIFALSGPKTTILL 178 (220)
Q Consensus 143 ~~fD~V~~~d~-----------y~~~~~~~l~~~l~~~l~~~g~~~i 178 (220)
+.||+|+.=.. ++.......+..+.++++++|+.+.
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 77888776443 2223345566778888999998553
No 299
>PRK11524 putative methyltransferase; Provisional
Probab=92.44 E-value=0.25 Score=41.16 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.5
Q ss_pred CCCccEEEEecCCCCC-----------------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 142 APPFDYIIGTDVYAEH-----------------LLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~-----------------~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
.++||+|+++++|... .+..++..+.++|+|+|.+++....
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 5689999999985421 1246888889999999999986544
No 300
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.25 E-value=0.95 Score=40.89 Aligned_cols=40 Identities=35% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHH
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~ 102 (220)
..+.+|+=+|||. |+.++.+++ +|+.|++.|. ++.++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4567999999997 888887775 5999999997 44544443
No 301
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.73 E-value=2.5 Score=38.13 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=64.6
Q ss_pred CCCcEEEeCCcccHHHHHHHH-hC-----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee-CCC
Q 027659 64 KGKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNE 135 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~-~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw-~~~ 135 (220)
...+|.|--||+|..-+.+++ .+ ...++.+. +....+++-|+-.++... ++.....|- .++
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~ 254 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNP 254 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCC
Confidence 344899999999865555553 22 23788997 668999999999887621 111111100 000
Q ss_pred CCc-cccCCCccEEEEecCCC-CC-------------------------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659 136 DHI-KAVAPPFDYIIGTDVYA-EH-------------------------LLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 136 ~~~-~~~~~~fD~V~~~d~y~-~~-------------------------~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
... .....+||+|+++++|. .. .-..++..+...|+|+|++-+..
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 000 11346799999999843 10 11467788888889877555443
No 302
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.58 E-value=3.6 Score=32.82 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=55.3
Q ss_pred CCCcEEEeCCccc----HHHHHHHHh--CCeEEEe-cchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-
Q 027659 64 KGKRVIELGAGCG----VAGFGMALL--GCNVITT-DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE- 135 (220)
Q Consensus 64 ~~~~vLELGcG~G----~~~l~la~~--g~~v~~~-D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~- 135 (220)
.-+.++|..|+.| .++|++|.. |.+++++ +..+.+...++.+...+. ...++|.. ++.
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvv---g~~~ 106 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVV---GEAP 106 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEe---cCCH
Confidence 4567999976643 334444432 6675554 444455555555554443 23356655 442
Q ss_pred CCccccCCCccEEEEecCCCCCChH-HHHHHHHHhhCCCcEEEEEEEecC
Q 027659 136 DHIKAVAPPFDYIIGTDVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS 184 (220)
Q Consensus 136 ~~~~~~~~~fD~V~~~d~y~~~~~~-~l~~~l~~~l~~~g~~~i~~~~r~ 184 (220)
+..-..-...|+++. || ...++. .+++.+. ++|.|.+++++...+
T Consensus 107 e~~~~~~~~iDF~vV-Dc-~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 107 EEVMPGLKGIDFVVV-DC-KREDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHHhhccCCCEEEE-eC-CchhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 222122356888873 23 222333 6666544 678888888876544
No 303
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.58 E-value=0.45 Score=41.41 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=46.9
Q ss_pred CcEEEeCCcc-cHHHH-HHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 66 KRVIELGAGC-GVAGF-GMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 66 ~~vLELGcG~-G~~~l-~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
++||=||||. |.... .+|+.+ .+|++.|. .+.++.+..+. ..++++..+|..+.+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHHHH
Confidence 5799999974 43332 234456 57999997 45444333321 23678899888877655444
Q ss_pred CCCccEEEEecC
Q 027659 142 APPFDYIIGTDV 153 (220)
Q Consensus 142 ~~~fD~V~~~d~ 153 (220)
-..+|+||..-+
T Consensus 66 i~~~d~VIn~~p 77 (389)
T COG1748 66 IKDFDLVINAAP 77 (389)
T ss_pred HhcCCEEEEeCC
Confidence 456799999887
No 304
>PRK13699 putative methylase; Provisional
Probab=91.23 E-value=0.8 Score=36.87 Aligned_cols=59 Identities=17% Similarity=0.393 Sum_probs=39.1
Q ss_pred cCCCccEEEEecCCCC----------------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEE
Q 027659 141 VAPPFDYIIGTDVYAE----------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 202 (220)
Q Consensus 141 ~~~~fD~V~~~d~y~~----------------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~ 202 (220)
+++++|+|+..++|+. +-....+..+.++|+|||.+++....+.. ..+...++ .+|.+.
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l~ 92 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSVV 92 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEEe
Confidence 4678999999988642 11346778888999999988875443322 34555554 377654
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.11 E-value=1.3 Score=37.80 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc----hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ----IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~----~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..|.+||=+|+|. |.+++.+|+ .|++|++++. ++-++.++ ..+. .. .++.+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga---------------~~--v~~~~~~ 229 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGA---------------TY--VNSSKTP 229 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCC---------------EE--ecCCccc
Confidence 3678899999986 777777775 5889999885 22333332 2221 11 1111110
Q ss_pred Cc-cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 137 HI-KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 137 ~~-~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
.. ......+|+|+-+-- ....+....++++++|.+++..
T Consensus 230 ~~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 230 VAEVKLVGEFDLIIEATG-----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred hhhhhhcCCCCEEEECcC-----CHHHHHHHHHHccCCcEEEEEe
Confidence 00 011346888875422 1235666677889999877654
No 306
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.01 E-value=1.4 Score=38.20 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=65.3
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhh--hhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTS--RISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~--~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+....|||+|.|-+-..+|.. +. +-+|..+ +..-+.+..|...+.. ..-.. ....+.....+..+...
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-----~~~~~~~i~gsf~~~~~ 265 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-----KPNKIETIHGSFLDPKR 265 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-----CcCceeecccccCCHHH
Confidence 35668999999998777766654 33 2445443 2222333333332221 11000 12345566655444433
Q ss_pred ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
........++|+.+.+ |.++.--.+- .+.+-|++|.+++-.-+.
T Consensus 266 v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 266 VTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPL 310 (419)
T ss_pred HHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEeccccc
Confidence 3334567899999999 8877655554 566667888888765543
No 307
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.92 E-value=1.5 Score=36.58 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=49.0
Q ss_pred CCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+||=+|||. |+.++.+|+ .|++ |+++|. ++-++.+... .. +.. .+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--------------i~~-----~~~---- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--------------LDP-----EKD---- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--------------cCh-----hhc----
Confidence 567899889986 888887775 5887 667776 3333333211 00 000 000
Q ss_pred ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
....+|+|+-+-- ....+....++++++|++++..
T Consensus 197 -~~~g~Dvvid~~G-----~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 -PRRDYRAIYDASG-----DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -cCCCCCEEEECCC-----CHHHHHHHHHhhhcCcEEEEEe
Confidence 1346888874321 2345566667888999887653
No 308
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.45 E-value=1.1 Score=37.45 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.++.|+.||==|.|.|+ .++.+|++|++++..|+ .+..+...+.++.++ ++.....|.++.+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~~e 99 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISDRE 99 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCCHH
Confidence 56789999999999986 67777888999999998 555555555555443 4677777777765
Q ss_pred Cc-------cccCCCccEEEEecC
Q 027659 137 HI-------KAVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~-------~~~~~~fD~V~~~d~ 153 (220)
+. ...-+..|+++.|.-
T Consensus 100 ei~~~a~~Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 100 EIYRLAKKVKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 42 123467888888764
No 309
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.41 E-value=0.61 Score=33.28 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=49.6
Q ss_pred CcEEEeCCcc-cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659 66 KRVIELGAGC-GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (220)
Q Consensus 66 ~~vLELGcG~-G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 144 (220)
++|+|+|-|- =-++-.+++.|..|++||+.+. ++. .-+++..-|..++.-. .-+.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~----------------~g~~~v~DDitnP~~~--iY~~ 70 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TAP----------------EGLRFVVDDITNPNIS--IYEG 70 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cCc----------------ccceEEEccCCCccHH--HhhC
Confidence 3899999997 3466777888999999998652 111 2356666555554211 1234
Q ss_pred ccEEEEecCCCCCChHHHHHHHHHhhCC-CcEEEE
Q 027659 145 FDYIIGTDVYAEHLLEPLLQTIFALSGP-KTTILL 178 (220)
Q Consensus 145 fD~V~~~d~y~~~~~~~l~~~l~~~l~~-~g~~~i 178 (220)
.|+|.+--+ .+.+...+-.+.+. |.-+||
T Consensus 71 A~lIYSiRp-----ppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 71 ADLIYSIRP-----PPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred ccceeecCC-----CHHHHHHHHHHHHhhCCCEEE
Confidence 566555433 55566655555433 334444
No 310
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.12 E-value=4.3 Score=31.53 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=48.2
Q ss_pred cEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHH------------HHHhhhhhccCCCCCCCCCceEEEEee
Q 027659 67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRN------------VEWNTSRISQMNPGSDLLGSIQAVELD 131 (220)
Q Consensus 67 ~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n------------~~~n~~~~~~~~~~~~~~~~v~~~~ld 131 (220)
+|-=+|.|. |+ .+..+|..|.+|+++|. ++-++.+++- ++.+.. ..+..+.. |
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~-----------~~~l~~t~-~ 69 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS-----------AGRLRATT-D 69 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH-----------TTSEEEES-E
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc-----------cccchhhh-h
Confidence 444567775 54 44455677999999998 4555544321 011100 12333331 1
Q ss_pred eCCCCCccccCCCccEEEEecC--CCCC------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 132 WGNEDHIKAVAPPFDYIIGTDV--YAEH------LLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 132 w~~~~~~~~~~~~fD~V~~~d~--y~~~------~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
+.. .....|+++.+-+ +... .+...++.+...++++..+++-.+
T Consensus 70 ~~~------ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 70 IEE------AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp HHH------HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred hhh------hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 111 1234676655443 4332 367778888888999777776443
No 311
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.11 E-value=5.2 Score=31.58 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=44.2
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++||=.|++. .+|..++ +.|++|++++. ++.++.+...+.. ..++.+...|+.+....
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~~~ 68 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--------------YGNIHYVVGDVSSTESA 68 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCHHHH
Confidence 578999999864 3444444 45889999987 4433333222221 12567778888765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ..-+..|.++.+..
T Consensus 69 ~~~~~~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 69 RNVIEKAAKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHHHHHHHHhCCCCEEEEcCC
Confidence 1 11235788877665
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.91 E-value=0.79 Score=39.66 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.4
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR 103 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~ 103 (220)
...|.+||.+|||. |...+.+|+ .|. +|+++|. ++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 34678999999987 888887776 476 4999987 556666654
No 313
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.36 E-value=3.2 Score=35.07 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=51.1
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
...|.+||=.|+|. |...+.+|+ .|++|++++. ++-++.+++ .+. ..+ ... .+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga------------~~v--i~~--~~~--- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGA------------ASA--GGA--YDT--- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCC------------cee--ccc--ccc---
Confidence 34678999999865 666666664 4888999886 444444433 221 011 000 000
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..+.+|+++-.+.. ...+....++++++|++++..
T Consensus 220 --~~~~~d~~i~~~~~-----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 --PPEPLDAAILFAPA-----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --CcccceEEEECCCc-----HHHHHHHHHhhCCCcEEEEEe
Confidence 12357877654441 235566667889999887654
No 314
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.17 E-value=7.9 Score=29.54 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=42.2
Q ss_pred cCCCccEEEEecC-CC------C-------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEe
Q 027659 141 VAPPFDYIIGTDV-YA------E-------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV 204 (220)
Q Consensus 141 ~~~~fD~V~~~d~-y~------~-------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v 204 (220)
...+||.|+-+=| .. . ..+..+++....+|+++|.+.|+.....+-..-...+.. +.++.+...
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 3578999999888 43 1 235567778888899999999999877662111222333 346766443
No 315
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.01 E-value=0.68 Score=37.57 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHH
Q 027659 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPL 100 (220)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~ 100 (220)
.|+.+|.+.. |.. ...+++|+-||+|.+++.+...+.+|+.-|+ +..+..
T Consensus 7 ~l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~ 57 (260)
T PF02086_consen 7 KLAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINF 57 (260)
T ss_dssp GGHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHH
T ss_pred HHHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHH
Confidence 3556666654 232 6779999999999999998888888999998 444333
No 316
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=88.86 E-value=3.4 Score=33.98 Aligned_cols=108 Identities=22% Similarity=0.283 Sum_probs=50.5
Q ss_pred HHHHHHhhccccCCCCCCCCCCCcEEEeCCcc--cH-HHHHHH-Hh---CCeEEEecchhhHHHHHHHHHHhhhhhccCC
Q 027659 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--GV-AGFGMA-LL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (220)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~--G~-~~l~la-~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (220)
-|.+||.... -.-..+++||-||+|+ |. +|-+.. +. ++-++=.|+.+.+.
T Consensus 47 QLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------- 103 (299)
T PF06460_consen 47 QLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------- 103 (299)
T ss_dssp HHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------
T ss_pred HHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----------------
Confidence 5777885421 1233678999999997 44 344444 33 44444455544211
Q ss_pred CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCC-------------CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIR 183 (220)
Q Consensus 117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~-------------~~~~~~l~~~l~~~l~~~g~~~i~~~~r 183 (220)
..+.. .. ++-... ..+.+||+|++ |+|. +..+.-+...++.-|+-||.+.+-....
T Consensus 104 -----Da~~~-~~---~Dc~t~-~~~~k~DlIiS-DmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 104 -----DADQS-IV---GDCRTY-MPPDKFDLIIS-DMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp -----SSSEE-EE---S-GGGE-EESS-EEEEEE-----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred -----ccCCc-ee---cccccc-CCCCcccEEEE-ecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 11122 22 221111 23678999985 5552 1235566777788899999988866655
Q ss_pred Cc
Q 027659 184 ST 185 (220)
Q Consensus 184 ~~ 185 (220)
+-
T Consensus 173 Sw 174 (299)
T PF06460_consen 173 SW 174 (299)
T ss_dssp S-
T ss_pred cc
Confidence 43
No 317
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.76 E-value=0.91 Score=39.26 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.2
Q ss_pred CcEEEeCCcccHHHHHHHH-hCCeEEEecchh
Q 027659 66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIE 96 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~-~g~~v~~~D~~~ 96 (220)
..++|+|+|.|.++-.++. .|-.|.++|.+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 4799999999999999984 577899999865
No 318
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.60 E-value=2.4 Score=35.57 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=57.6
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
++|+=+|||. |+++..+++.|.+|++++. .+-++.++++ +++.+... .....+. ..... +...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~------g~~~~~~-~~~~~----~~~~ 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVEQ------GQASLYA-IPAET----ADAA 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEeeC------Ccceeec-cCCCC----cccc
Confidence 4789999997 6678888888989999987 4444444431 22211100 0111111 00011 1123
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
+.||+|+.+-= |. ....++.+..++.+++.++...
T Consensus 69 ~~~D~viv~vK~~~---~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 69 EPIHRLLLACKAYD---AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred cccCEEEEECCHHh---HHHHHHHHHhhCCCCCEEEEEe
Confidence 57999987633 54 5567778888888888766654
No 319
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.52 E-value=1.4 Score=38.19 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHH
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLP 99 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~ 99 (220)
..+.+|+=+|+|. |...+..++ +|++|+++|. ++.++
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~ 204 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLR 204 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 3567799999985 666665554 5889999997 44333
No 320
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.52 E-value=1 Score=38.62 Aligned_cols=97 Identities=24% Similarity=0.225 Sum_probs=56.2
Q ss_pred CCCcEEEeCCcc-cHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659 64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~- 138 (220)
.+.+|+=+|||+ |++++.+|+. |+ +|+++|. ++=++.+++-... .+.+...........
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----------------~~~~~~~~~~~~~~~~ 231 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----------------DVVVNPSEDDAGAEIL 231 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----------------eEeecCccccHHHHHH
Confidence 444899999999 9999888864 65 5999998 5566666542110 000100000000000
Q ss_pred cc-cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 139 KA-VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 139 ~~-~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.. ....+|+++=+-- ....+....++++++|.+.+..-
T Consensus 232 ~~t~g~g~D~vie~~G-----~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 232 ELTGGRGADVVIEAVG-----SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHhCCCCCCEEEECCC-----CHHHHHHHHHHhcCCCEEEEEec
Confidence 00 1236888874322 44566777778889888776543
No 321
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.25 E-value=3.4 Score=34.47 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCce-EEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~ldw~~~~~~ 138 (220)
..+.+||-.|+|. |...+.+|+ .|.+|++++. ++..+.++. .+. ..+ .....++...- .
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~------------~~~~~~~~~~~~~~~-~ 226 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA------------DEVLNSLDDSPKDKK-A 226 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC------------CEEEcCCCcCHHHHH-H
Confidence 4567888888874 777777775 5888999886 444444432 221 000 00000000000 0
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
......+|+|+.+- . ....+..+.+.|+++|.++..
T Consensus 227 ~~~~~~~D~vid~~-g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGLGGGFDVIFDFV-G----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HhcCCCceEEEECC-C----CHHHHHHHHHHhhcCCEEEEE
Confidence 11245689887431 1 134566777889999988764
No 322
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.05 E-value=6.3 Score=33.24 Aligned_cols=99 Identities=27% Similarity=0.341 Sum_probs=60.1
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
++|+=+|||. |+++..|++.|..|+++-.++.++.++++ ++.+... ..+....... ........
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~------~~~~~~~~~~----~~~~~~~~ 66 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDE------GGNFTTPVVA----ATDAEALG 66 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecC------CCcccccccc----ccChhhcC
Confidence 3688899997 77888888889667777665545555443 4322110 0111111100 01111245
Q ss_pred CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.+|+|+..-= |. .++.++.+..++++...+++...
T Consensus 67 ~~Dlviv~vKa~q---~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 67 PADLVIVTVKAYQ---LEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred CCCEEEEEecccc---HHHHHHHhhhcCCCCcEEEEEeC
Confidence 8999997754 55 67888889999999988777554
No 323
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.80 E-value=5.1 Score=32.95 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=66.6
Q ss_pred CcEEEeCCcccHHHHHHHHh-CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Ccc--
Q 027659 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIK-- 139 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~~-- 139 (220)
..|+.||||.=.-+.-+... +..++=+|.|++++.=++-+..++.. ...+..++..|.. .. .+.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHHHHHhC
Confidence 36999999965444444322 34577778898887766666654321 1345666666654 11 011
Q ss_pred -ccCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 140 -AVAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 140 -~~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
......-++++-.+ |.. +....+++.+.....||+.+++-+..
T Consensus 153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 11234457777777 543 45788999999888888888876543
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.77 E-value=3 Score=34.26 Aligned_cols=39 Identities=36% Similarity=0.566 Sum_probs=27.5
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHH
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~ 101 (220)
..+.+||=.|+|. |++++.+|+ .|++ |+++|. ++-++.+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 3678899999876 777776765 4876 888886 4444444
No 325
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=87.62 E-value=1.4 Score=35.27 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC----CeEEEecc-hhhHHHHHHHHHHhhh---hhc---------cC-CCC-------
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTS---RIS---------QM-NPG------- 118 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~---~~~---------~~-~~~------- 118 (220)
..-++.|=-||.|.+--.+..+. ..|+++|+ +++++++++|+..-.. .-+ +. .|.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34579999999998777666542 25999999 5699999999874211 100 00 000
Q ss_pred ----------CCCCCceEEEEeeeCCCCCc--cccCCCccEEEEecCCCCC-C---------hHHHHHHHHHhhCCCcEE
Q 027659 119 ----------SDLLGSIQAVELDWGNEDHI--KAVAPPFDYIIGTDVYAEH-L---------LEPLLQTIFALSGPKTTI 176 (220)
Q Consensus 119 ----------~~~~~~v~~~~ldw~~~~~~--~~~~~~fD~V~~~d~y~~~-~---------~~~l~~~l~~~l~~~g~~ 176 (220)
........+...|..+.... .......|+|+.--+|... . ...++..+..+|-.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 01122355555444432211 1123446887754436432 1 456888888889556666
Q ss_pred EEEEEec
Q 027659 177 LLGYEIR 183 (220)
Q Consensus 177 ~i~~~~r 183 (220)
.++.+.|
T Consensus 211 ~v~~k~~ 217 (246)
T PF11599_consen 211 AVSDKGR 217 (246)
T ss_dssp EEEESSS
T ss_pred EEecCCc
Confidence 6644443
No 326
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.60 E-value=0.95 Score=38.31 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.2
Q ss_pred EEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHH
Q 027659 68 VIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (220)
Q Consensus 68 vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~ 105 (220)
|+||-||.|.+++.+.+.|.+ |.++|. +.+++..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 689999999999999999998 557998 55888887775
No 327
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.59 E-value=6.7 Score=32.54 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=52.8
Q ss_pred cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC------CCCceEEEEeeeCCCCC
Q 027659 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD------LLGSIQAVELDWGNEDH 137 (220)
Q Consensus 67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~------~~~~v~~~~ldw~~~~~ 137 (220)
+|-=||+|+ +.++..++..|.+|++.|. ++.++.++.+++.............. ...++.+.. +
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----d--- 77 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT----D--- 77 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC----C---
Confidence 577789886 2344455566889999998 56777776665432110000000000 001232221 1
Q ss_pred ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEE
Q 027659 138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTI 176 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~ 176 (220)
....-...|+|+-+-+...+....+++.+...++++..+
T Consensus 78 ~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 78 LAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE
Confidence 111124568888764433334566667777666666544
No 328
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.39 E-value=3.2 Score=34.90 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=55.8
Q ss_pred CCcEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659 65 GKRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (220)
Q Consensus 65 ~~~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~ 142 (220)
.++|+=+|+|. |.++..+++.|.+|++..... .+. +..++...... ..+..+......... ...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~~------~~~~~~~~~~~~~~~---~~~ 70 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDSV------HGDFHLPPVQAYRSA---EDM 70 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEeC------CCCeeecCceEEcch---hhc
Confidence 35799999996 567777777888888887633 222 33343321100 011111111111111 123
Q ss_pred CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
..||+|+.+-- |. ...+++.+..++++++.++...
T Consensus 71 ~~~D~vilavK~~~---~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 71 PPCDWVLVGLKTTA---NALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CCCCEEEEEecCCC---hHhHHHHHhhhcCCCCEEEEec
Confidence 57999988766 54 3567777788888888765543
No 329
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.79 E-value=14 Score=29.44 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=49.0
Q ss_pred CCCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
..++++++|=.|++.|+ |..++ +.|++|++++. ++.++.+...++..+ .++.+...|..+.
T Consensus 7 ~~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 7 FSLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADE 72 (256)
T ss_pred cCCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCH
Confidence 34578999999976544 44443 45889999987 445544444443322 3577788887765
Q ss_pred CCcc-------ccCCCccEEEEecC
Q 027659 136 DHIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 136 ~~~~-------~~~~~fD~V~~~d~ 153 (220)
.... ..-++.|.|+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 73 EAVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4321 11246798887755
No 330
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.74 E-value=0.18 Score=35.67 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=28.7
Q ss_pred CccEEEEecC--C-----CCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 144 PFDYIIGTDV--Y-----AEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 144 ~fD~V~~~d~--y-----~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
+||+|+|-.+ + .++-+..+++.+..+|+|||.+++-.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4899999887 2 244577899999999999999999754
No 331
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.62 E-value=3.1 Score=34.68 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=42.0
Q ss_pred CCCCCcEEEeCCcccHHH-HH--HHHhCCe-EEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAG-FG--MALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~-l~--la~~g~~-v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..+++++|=+|+| |..- ++ ++..|++ |+.++... ..+.+++-++.-.. ....+.+...+|.+..
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~----------~~~~~~~~~~d~~~~~ 191 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQ----------EVPECIVNVYDLNDTE 191 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhh----------cCCCceeEEechhhhh
Confidence 3567899999997 4422 22 3356876 99888631 12222222211110 0123445556665443
Q ss_pred CccccCCCccEEEEecC
Q 027659 137 HIKAVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~ 153 (220)
.....-..+|+|+.+-+
T Consensus 192 ~~~~~~~~~DilINaTp 208 (289)
T PRK12548 192 KLKAEIASSDILVNATL 208 (289)
T ss_pred HHHhhhccCCEEEEeCC
Confidence 32222245799988776
No 332
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.47 E-value=3.7 Score=34.76 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=60.5
Q ss_pred CCCCcEEEeCCcc-cHHHHHHH-HhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la-~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
....+|.=||-|. |..+--.| -+|++|+..|.+ +-++.+.. .. ..++.... .+...+.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd---~f-------------~~rv~~~~---st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD---LF-------------GGRVHTLY---STPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH---hh-------------CceeEEEE---cCHHHHH
Confidence 3445788898886 66555544 468999999984 33333322 11 13444443 3333333
Q ss_pred ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659 140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
..-.+.|+||++=. -....+....+.+.+.++||++++
T Consensus 227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 34568999999877 666666666777778889988766
No 333
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.39 E-value=2.4 Score=36.21 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHH
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~ 101 (220)
..|.+||=.|||. |...+.+|+ .|++ |+++|. ++-++.+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 4678899999876 777777775 4875 999987 4444444
No 334
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=86.26 E-value=11 Score=32.32 Aligned_cols=111 Identities=18% Similarity=0.018 Sum_probs=62.9
Q ss_pred hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120 (220)
Q Consensus 41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (220)
.+.+|.+.+. .+.+++||=+|--...+...++....+|...++....... .+ .
T Consensus 7 ~s~~~~r~~~-----------~~~~~~~l~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~-~~-----~---------- 59 (342)
T PRK09489 7 ASEVLLRHSD-----------DFEQRRVLFAGDLQDDLPAQLDAASVRVHTQQFHHWQVLS-RQ-----M---------- 59 (342)
T ss_pred HHHHHHhhHH-----------HhCCCcEEEEcCcchhhHHhhhccceEEehhhhHHHHHHH-hh-----c----------
Confidence 4566666553 4578889988876655555554222234444554422111 11 0
Q ss_pred CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
..++.+- .+... .....||.|+.--+=.....+-++..+...|+|||.++++..++..
T Consensus 60 -~~~~~f~-~~~~~-----~~~~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g 117 (342)
T PRK09489 60 -GDNARFS-LVATA-----EDVADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSG 117 (342)
T ss_pred -CCceEec-cccCC-----ccCCCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 1122222 11111 1235799998655522233666777788889999999999998875
No 335
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.25 E-value=2 Score=33.68 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhhCCCcEEEEEEEecCch--HHHHHHHHHhcCCeE
Q 027659 159 LEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWKSNFNV 201 (220)
Q Consensus 159 ~~~l~~~l~~~l~~~g~~~i~~~~r~~~--~~~~f~~~~~~~f~v 201 (220)
+..++..+.++|+|+|.+++....+... ......+.+. +|.+
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g-~~~~ 78 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG-GFFL 78 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT-T-EE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh-hhhe
Confidence 3567778888999999999887766654 3333344444 4554
No 336
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=86.04 E-value=15 Score=30.28 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=56.4
Q ss_pred CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..+.|+.+|-=|...|+ .+..+++.|++|+.++. ++.++.........+. ...++.....|..+.+
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~ 73 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY----------TGGKVLAIVCDVSKEV 73 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCCeeEEEECcCCCHH
Confidence 46789999999997765 45677788999999997 5566665555444332 1346777777776543
Q ss_pred Cc--------cccCCCccEEEEecC
Q 027659 137 HI--------KAVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~--------~~~~~~fD~V~~~d~ 153 (220)
.. ....++.|+++.+.-
T Consensus 74 ~~~~l~~~~~~~~~GkidiLvnnag 98 (270)
T KOG0725|consen 74 DVEKLVEFAVEKFFGKIDILVNNAG 98 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 21 112568999998765
No 337
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.97 E-value=2.8 Score=35.58 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..++++|=.|+..|+- +..+++.|++|++++. ++.++.+...+...+ .++.+...|..+.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v 71 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV 71 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence 4678899889865442 2233456899999987 455555555554332 3567777888765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ...+.+|+++.+--
T Consensus 72 ~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 72 KALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 2 11257899988754
No 338
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.24 E-value=2.7 Score=33.39 Aligned_cols=77 Identities=23% Similarity=0.218 Sum_probs=46.5
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+++||=.|++ |.+|..++ +.|++|++++. ++.+..+...+... ..++.+...|+.+.+.
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA-------------GGKARARQVDVRDRAA 69 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 467889988864 55555544 45889999986 34333333333322 2357788888877543
Q ss_pred ccc-------cCCCccEEEEecC
Q 027659 138 IKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~~-------~~~~fD~V~~~d~ 153 (220)
... ..+.+|+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~ag 92 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANAG 92 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 211 1236899988865
No 339
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.92 E-value=3.3 Score=33.37 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=47.8
Q ss_pred CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|++.|+ |.. +++.|++|+++|. ++.++.+...+..... ..++.+...|..+...
T Consensus 5 l~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 5 LAGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----------GARVLAVPADVTDAAS 72 (260)
T ss_pred cCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----------CceEEEEEccCCCHHH
Confidence 467899999986544 333 3455899999987 4444444444332111 2457777878776543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...+..|+++.+.-
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 21 11247898887654
No 340
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.84 E-value=9.6 Score=29.99 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.++++|=.|+ +|.+|..++ ..|++|++++. ++..+.+...+... ..+.+...|..+....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~~ 69 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEADV 69 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHHH
Confidence 4678999996 555555554 34889999986 44333333322211 2467777776654432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. .....+|+|+.+.-
T Consensus 70 ~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 70 QRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 01236899887654
No 341
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.62 E-value=2.8 Score=33.63 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=46.7
Q ss_pred CCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++++|=.|++.|+- +..+++.|++|++++. .+.++.+...+... ..++.+...|..+.+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-------------GGKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHHH
Confidence 4688999999866542 2233455899999987 44444444333322 13566777777665432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ..-++.|+++.+.-
T Consensus 74 ~~~~~~~~~~~g~id~lv~~ag 95 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNAG 95 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 1 11247899987754
No 342
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.61 E-value=5.7 Score=33.28 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..+++++|=.|++.|+ |..+ ++.|++|++++. .+-.+.+...+..... ..++.+..+|..+..
T Consensus 11 ~l~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 11 DLSGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----------DAKLSLRALDLSSLA 78 (313)
T ss_pred ccCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEecCCCHH
Confidence 3578899999987654 3333 355899998876 3333333333322111 236788888887754
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ...++.|+++.+.-
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECCc
Confidence 321 12356899887754
No 343
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.58 E-value=11 Score=31.13 Aligned_cols=78 Identities=22% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecch-h-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~~-~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
..+++++|=.|++.|+ |..+ ++.|++|++++.. + .++.....++.. ..++.+...|..+.
T Consensus 43 ~~~~k~iLItGasggI-G~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~ 108 (290)
T PRK06701 43 KLKGKVALITGGDSGI-GRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDE 108 (290)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCH
Confidence 4567899999976654 3333 3458899888763 2 233332222221 23567777777665
Q ss_pred CCccc-------cCCCccEEEEecC
Q 027659 136 DHIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 136 ~~~~~-------~~~~fD~V~~~d~ 153 (220)
..... ....+|+|+.+..
T Consensus 109 ~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 109 AFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 43211 1246898886644
No 344
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.46 E-value=4.2 Score=32.37 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+...+ .++....+|-.+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~ 69 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI 69 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence 467899999999876 34445567999999986 445554444443322 2445555665554432
Q ss_pred c-------ccCC-CccEEEEec
Q 027659 139 K-------AVAP-PFDYIIGTD 152 (220)
Q Consensus 139 ~-------~~~~-~fD~V~~~d 152 (220)
. ..-+ ..|+++.+.
T Consensus 70 ~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 70 RHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 1 1113 789998875
No 345
>PRK08339 short chain dehydrogenase; Provisional
Probab=84.32 E-value=4.3 Score=32.98 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=47.6
Q ss_pred CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+.... ..++.+...|..+....
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~i 73 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKREDL 73 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence 578889999987654 22334456999999987 444444444433211 23577778787765432
Q ss_pred cc------cCCCccEEEEecC
Q 027659 139 KA------VAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~~------~~~~fD~V~~~d~ 153 (220)
.. ..+..|+++.+.-
T Consensus 74 ~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 74 ERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHhhCCCcEEEECCC
Confidence 11 1246898887653
No 346
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.18 E-value=3.5 Score=33.22 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCCCCcEEEeCCcccHHHHH---HHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGCGVAGFG---MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~---la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
...++++|=.|++.|+-.-. +++.|++|++++..+..+.+.+.+... ..++.+...|..+.+..
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 78 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA 78 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 35788999999977543322 345689988887643233333222221 23567777777765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ...+..|+++.+.-
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246898887654
No 347
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.15 E-value=15 Score=34.29 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=42.2
Q ss_pred eeeCCCCC-ccccCCCccEEEEecC---CCCCCh-HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEE
Q 027659 130 LDWGNEDH-IKAVAPPFDYIIGTDV---YAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 203 (220)
Q Consensus 130 ldw~~~~~-~~~~~~~fD~V~~~d~---y~~~~~-~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~ 203 (220)
+-|++... ++.....||+++.-.- -+++.+ +.+++.+.++++|+|++. ++.. -....+.+ ..+|+++.
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~-t~t~-----a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA-TFTS-----AGFVRRGLQEAGFTVRK 224 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE-Eeeh-----HHHHHHHHHHcCCeeee
Confidence 44455432 2223356999987643 444444 689999999999998865 3321 12223334 45898877
Q ss_pred ee
Q 027659 204 VP 205 (220)
Q Consensus 204 v~ 205 (220)
.+
T Consensus 225 ~~ 226 (662)
T PRK01747 225 VK 226 (662)
T ss_pred cC
Confidence 64
No 348
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.98 E-value=2.7 Score=34.62 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCCcEEEeCCcccHHHHHHHHhC-------CeEEEecc
Q 027659 64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ 94 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~~g-------~~v~~~D~ 94 (220)
++..++|+|||.|.+|-.+++.- ..++++|.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 55689999999999999998642 36899996
No 349
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=83.63 E-value=5.9 Score=31.85 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCCCCcEEEeCCcccHHHHHHHH----hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..+++++|=.|+ +|.+|..+++ .|++|++++. .+-++.+...+... ..++.+...|..+.+
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------------GIDALWIAADVADEA 74 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence 347889999995 4556666553 4889999986 34444443333322 235677788877654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ......|.|+.+..
T Consensus 75 ~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 75 DIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 331 11246899988754
No 350
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=83.58 E-value=6.5 Score=31.32 Aligned_cols=94 Identities=28% Similarity=0.261 Sum_probs=52.9
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~- 138 (220)
.++.+||-.|+|. |...+.+++ .|.+|++++. ++..+.++.. +. .. .++.......
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~------------~~----~~~~~~~~~~~ 192 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA------------DH----VIDYKEEDLEE 192 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC------------ce----eccCCcCCHHH
Confidence 4678999999986 555555554 4788999987 4444444321 11 00 0111111100
Q ss_pred ---cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 139 ---KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 139 ---~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
......+|+|+.+-.. ...+..+.+.++++|.++....
T Consensus 193 ~~~~~~~~~~d~vi~~~~~-----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 193 ELRLTGGGGADVVIDAVGG-----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHhcCCCCCEEEECCCC-----HHHHHHHHHhcccCCEEEEEcc
Confidence 0124579999864321 1445666677889998876543
No 351
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.55 E-value=4.5 Score=32.38 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=46.3
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
...+++||=.|++ |.+|..++ +.|++|++++. ++.++.+...+... ..++.+...|..+.+
T Consensus 6 ~~~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 71 (258)
T PRK06949 6 NLEGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQ 71 (258)
T ss_pred CCCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence 3578899999954 44455444 44889999986 44444443333221 235677777776654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ...+..|+|+.+.-
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 72 SIKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 321 11246898888665
No 352
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=83.55 E-value=9.9 Score=26.54 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=35.7
Q ss_pred CccEEEEecCCCCC---------------ChHHHHHHHHHhhCCCcEEEEEEEecC---chHHHHHHHHHhcCCeEEEee
Q 027659 144 PFDYIIGTDVYAEH---------------LLEPLLQTIFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNFNVKLVP 205 (220)
Q Consensus 144 ~fD~V~~~d~y~~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r~---~~~~~~f~~~~~~~f~v~~v~ 205 (220)
+||+|++||||... .+..++....+++ +|.+.+..+.+- ......+.+.+-....+..+-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~~i~~i~ 79 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNTNIKKII 79 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCCCeeEEE
Confidence 69999999995321 1233566556667 777755555322 223456666665555565554
Q ss_pred C
Q 027659 206 K 206 (220)
Q Consensus 206 ~ 206 (220)
.
T Consensus 80 ~ 80 (106)
T PF07669_consen 80 D 80 (106)
T ss_pred E
Confidence 3
No 353
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.21 E-value=6.4 Score=31.53 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=47.1
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.++++++|=.|+ +|.+|..++ ..|++|++++. ++.++.+...+... ..++.+...|..+.+
T Consensus 7 ~~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 7 DLTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-------------GLSAHALAFDVTDHD 72 (255)
T ss_pred CCCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CceEEEEEccCCCHH
Confidence 357889999996 445555555 35889999987 34444443333322 124667777776654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ......|+|+.+.-
T Consensus 73 ~~~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 73 AVRAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 321 11246898888765
No 354
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=83.13 E-value=9.4 Score=31.34 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhCC--eEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g~--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.+...+|||+|+..=+-.+. ..|. +.+.+|++. .++...+.+...-. .-.+...+.|....-
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----------~l~v~~l~~~~~~~L 146 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----------GLEVNALCGDYELAL 146 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----------CCeEeehhhhHHHHH
Confidence 46789999999866554443 3343 688999955 55544444433221 123333443332221
Q ss_pred -CccccCCCccEEEEecC--CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 137 -HIKAVAPPFDYIIGTDV--YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 137 -~~~~~~~~fD~V~~~d~--y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
.++....+.=+-++|.. +.+.....++..+...++||-.+++....+.+
T Consensus 147 a~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 147 AELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred hcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 12211222223344555 77777889999999999999999998776665
No 355
>PRK05876 short chain dehydrogenase; Provisional
Probab=83.07 E-value=5.5 Score=32.66 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
++++++|=.|++.|+ |..+ ++.|++|+++|. .+.++.+...+... ..++.+...|..+...
T Consensus 4 ~~~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~ 69 (275)
T PRK05876 4 FPGRGAVITGGASGI-GLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE-------------GFDVHGVMCDVRHREE 69 (275)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEeCCCCCHHH
Confidence 567889988887654 4433 345889999987 33444333333221 2356777777776543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...++.|+++.+.-
T Consensus 70 v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 70 VTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246798887654
No 356
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.95 E-value=7.3 Score=31.41 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=47.9
Q ss_pred CCCCCcEEEeCCcccHHH---HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~---l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+++.+|=.|++.|+-. ..++..|++|++++. ++.++.+...+..... ..++.+...|..+.+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----------GARLLAARCDVLDEAD 73 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEecCCCHHH
Confidence 357889999998765422 233355889999987 4444444333322110 2356777778777543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ..-+..|+++.+--
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 21 11256899887754
No 357
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.94 E-value=3.5 Score=35.13 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=28.3
Q ss_pred CCCCCcEEEeCC-c-ccHHHHHHHH-hCCeEEEecc-hhhHHHH
Q 027659 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLL 101 (220)
Q Consensus 62 ~~~~~~vLELGc-G-~G~~~l~la~-~g~~v~~~D~-~~~l~~~ 101 (220)
...|.+||=.|+ | .|...+.+|+ .|++|++++. ++-.+.+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 346789999998 4 4777777775 5889998886 4444444
No 358
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.89 E-value=4 Score=33.32 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred eCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC--CccccCCCc
Q 027659 71 LGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKAVAPPF 145 (220)
Q Consensus 71 LGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~--~~~~~~~~f 145 (220)
+..=.|.+.++... ..-+.++.|+ ++-.+.++.|+... .++++...|=-..- .++ +..+=
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allP-P~~rR 126 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLP-PPERR 126 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S--TTS-
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCC-CCCCC
Confidence 34445666665554 4557999998 77778887776532 36677663211100 011 12233
Q ss_pred cEEEEecCCC-CCChHHHHHHHHHhhC--CCcEEEEEEEecCchHHHHHHHHHhc
Q 027659 146 DYIIGTDVYA-EHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWKS 197 (220)
Q Consensus 146 D~V~~~d~y~-~~~~~~l~~~l~~~l~--~~g~~~i~~~~r~~~~~~~f~~~~~~ 197 (220)
-+|+.-++|. .++++.+++++.+.++ +.|++.|=++.......+.|.+.+++
T Consensus 127 glVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~ 181 (245)
T PF04378_consen 127 GLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKA 181 (245)
T ss_dssp EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHh
Confidence 3555444464 5678999999998886 78998888998777777888877753
No 359
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.85 E-value=5.1 Score=33.27 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=53.5
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC-----CCCceEEEEeeeCCCCC
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~ldw~~~~~ 137 (220)
++|.=||+|. | .++..++..|.+|++.|. ++.++.+...+..+..........+. ...++.+.. +.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~-- 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT----DL-- 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC----CH--
Confidence 4677789986 3 345555667889999997 56666655544433210000000000 001222221 11
Q ss_pred ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659 138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
.. -...|+|+-+-+-.......+++.+...++++..++
T Consensus 79 -~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 -ED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -HH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 235788887643222334566777777777776544
No 360
>PRK07109 short chain dehydrogenase; Provisional
Probab=82.77 E-value=18 Score=30.60 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCCCCcEEEeCCcccHHH---HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~---l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..++++||=.|+..|+-. ..+++.|++|++++. ++.++.+...+... ..++.+...|..+.+.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~-------------g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA-------------GGEALAVVADVADAEA 71 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-------------CCcEEEEEecCCCHHH
Confidence 346778999997654422 223456899999987 44555554444432 2357777878777553
Q ss_pred ccc-------cCCCccEEEEecC
Q 027659 138 IKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~~-------~~~~fD~V~~~d~ 153 (220)
... .-++.|+++.+.-
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCC
Confidence 221 1247899887654
No 361
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.63 E-value=14 Score=29.06 Aligned_cols=77 Identities=26% Similarity=0.291 Sum_probs=45.8
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEe-cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
+.++++|=.|+ +|.+|..++ +.|++|+.+ +. ++.++.+...+... ..++.+...|..+..
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE 68 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 45678888886 455555554 458888887 76 44444333333321 235778888877665
Q ss_pred Cccc-------cCCCccEEEEecC
Q 027659 137 HIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~-------~~~~fD~V~~~d~ 153 (220)
.... ....+|+|+.+.-
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 69 DVENLVEQIVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 3211 1136899988765
No 362
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.44 E-value=6 Score=32.92 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=54.1
Q ss_pred cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeeeCCCCCc
Q 027659 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~v~~~~ldw~~~~~~ 138 (220)
+|-=||+|+ +-.+..++..|.+|++.|. ++.++.++..+..+-....+....+ ....++++.. +.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~----~~--- 79 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT----DL--- 79 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC----CH---
Confidence 677889986 3345556677999999998 6677777666654422111100000 0011222221 11
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhh-CCCcEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALS-GPKTTI 176 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l-~~~g~~ 176 (220)
. .-...|+|+-+-+-..+.-..++..+.+++ +|+..+
T Consensus 80 ~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il 117 (286)
T PRK07819 80 G-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVL 117 (286)
T ss_pred H-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEE
Confidence 1 124568887664333333456667777776 455443
No 363
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.17 E-value=2.5 Score=36.30 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=27.6
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~ 102 (220)
..|.+||=+|+|. |...+.+|+ .|+ +|+++|. ++-++.++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 4577888899876 766666665 488 5999997 44444443
No 364
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=81.96 E-value=4.7 Score=32.77 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCcEEEeCCcccHHHHHHHHh----------CCeEEEecchhhHHHHHH
Q 027659 65 GKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKR 103 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~----------g~~v~~~D~~~~l~~~~~ 103 (220)
..+|+|+|+|+|.++.-+... ..+++.++.+..+...++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~ 67 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK 67 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence 368999999999998877643 136999998653343333
No 365
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.92 E-value=19 Score=29.76 Aligned_cols=96 Identities=28% Similarity=0.351 Sum_probs=53.4
Q ss_pred cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
+|+=+|+|. +.++..+++.|.+|+++|. ++.++.+++ ++.... ........ ........ ..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~~~~---~~~~~~~~-~~ 65 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEITVPV---LAADDPAE-LG 65 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCceeecc---cCCCChhH-cC
Confidence 577789886 3455556667888999997 554444332 222100 01111000 00011111 26
Q ss_pred CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
.+|+|+.+-. +. ...+++.+...+.++..++....
T Consensus 66 ~~d~vila~k~~~---~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 66 PQDLVILAVKAYQ---LPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred CCCEEEEeccccc---HHHHHHHHhhhcCCCCEEEEecC
Confidence 7999998766 53 67788888888877766655443
No 366
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=81.89 E-value=7.6 Score=35.75 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
...|++||=.|+. |.+|..++ +.|++|++++. .+-+..+..++....+..... ....++.++..|..+.+
T Consensus 77 ~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga----~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 77 TKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGT----QPVEKLEIVECDLEKPD 151 (576)
T ss_pred cCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccc----cccCceEEEEecCCCHH
Confidence 4467788888874 45555544 44889998886 443433333333221100000 00135788888887654
Q ss_pred CccccCCCccEEEEecC
Q 027659 137 HIKAVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~~~~~fD~V~~~d~ 153 (220)
.+...-+..|+||.+--
T Consensus 152 sI~~aLggiDiVVn~AG 168 (576)
T PLN03209 152 QIGPALGNASVVICCIG 168 (576)
T ss_pred HHHHHhcCCCEEEEccc
Confidence 43333356899887643
No 367
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.83 E-value=9.9 Score=30.07 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHH
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRN 104 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n 104 (220)
.+++++|=.||+ |.+|..++ +.|++|++++. ++.++.+...
T Consensus 4 l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (239)
T PRK08703 4 LSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDA 49 (239)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence 467899999964 44555544 45889999987 4444433333
No 368
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=81.56 E-value=6.1 Score=31.45 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=43.1
Q ss_pred CcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc--
Q 027659 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-- 138 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~-- 138 (220)
+++|=.|+. |.+|..++ +.|++|++++. ++-.+.+...+... ..++.+...|+.+.+..
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIAD 67 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHH
Confidence 467777754 55555555 34889999987 43333333322221 23677888888776522
Q ss_pred -----cccCCCccEEEEecC
Q 027659 139 -----KAVAPPFDYIIGTDV 153 (220)
Q Consensus 139 -----~~~~~~fD~V~~~d~ 153 (220)
.......|+|+.+..
T Consensus 68 ~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 68 MIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 112345898887664
No 369
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.53 E-value=4.4 Score=33.45 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC-----CCCceEEEEeeeCCCCCc
Q 027659 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~ldw~~~~~~ 138 (220)
+|-=+|+|. +.++..++..|.+|++.|. ++.++.++..+..+.....+...... ...++.+.. +..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~----~~~-- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT----DLD-- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC----CHH--
Confidence 466688886 4455556667889999997 55665555444332111100000000 001222211 111
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTI 176 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~ 176 (220)
.-...|+|+-+-+-....-..+++.+.+.++++..+
T Consensus 79 --~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 79 --DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred --HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEE
Confidence 124578887664322222357777777777777655
No 370
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.43 E-value=6.5 Score=28.88 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=50.7
Q ss_pred EEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659 68 VIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (220)
Q Consensus 68 vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f 145 (220)
|+=+|+|. .+++-.|++.|.+|++++-+.-++. +..++..+..... ...+.... .+... ......+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~~----~~~~~~~~-~~~~~---~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPDG----DETVQPPI-VISAP---SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETTE----EEEEEEEE-EESSH---GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEeccc----ceeccccc-ccCcc---hhccCCC
Confidence 34467765 2233344455888999987442222 3334432211000 01111111 11111 1235689
Q ss_pred cEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 146 DYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 146 D~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
|+|+.+-= |. .+..++.++..+.+++.+++..
T Consensus 69 D~viv~vKa~~---~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 69 DLVIVAVKAYQ---LEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp SEEEE-SSGGG---HHHHHHHHCTGEETTEEEEEES
T ss_pred cEEEEEecccc---hHHHHHHHhhccCCCcEEEEEe
Confidence 99997744 44 5678888888899987666544
No 371
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=81.05 E-value=9.2 Score=30.67 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=45.1
Q ss_pred CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..+++++|=.|++.|+ ++..+++.|++|+++|..+....+...+... ..++.+...|..+.+..
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA 71 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence 4578889999976544 2223345688999998744333232222221 23566777787765422
Q ss_pred c-------ccCCCccEEEEec
Q 027659 139 K-------AVAPPFDYIIGTD 152 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d 152 (220)
. ...+.+|+++.+-
T Consensus 72 ~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 1 1124689888765
No 372
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.04 E-value=12 Score=32.02 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc
Q 027659 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~ 94 (220)
.|.+||=.|+|. |+..+.+|+ .|++|++++.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 577888899986 777777775 5888888875
No 373
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.81 E-value=6.9 Score=32.44 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=27.3
Q ss_pred cEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHH
Q 027659 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (220)
Q Consensus 67 ~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~ 106 (220)
+|.=+|+|. | .++..+++.|.+|++.|. ++.++.+.+.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Confidence 577788875 3 344455567889999998 567777665443
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=80.79 E-value=9.5 Score=31.04 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=46.2
Q ss_pred CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+++++|=.|++.|+ |.. +++.|++|++++.++.++.+...+... ..++.+...|..+....
T Consensus 4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 69 (272)
T PRK08589 4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQV 69 (272)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHH
Confidence 467889989987654 333 345689999998654333333333221 23567777787765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ...++.|+++.+.-
T Consensus 70 ~~~~~~~~~~~g~id~li~~Ag 91 (272)
T PRK08589 70 KDFASEIKEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHHHHHHHHcCCcCEEEECCC
Confidence 1 11246898888764
No 375
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.75 E-value=10 Score=30.49 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=46.7
Q ss_pred CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
++++++|=.|++.|+ |.. +++.|++|++++. ++.++.+...+.... ..++.+...|..+...
T Consensus 5 ~~~k~vlItG~~~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~ 71 (259)
T PRK06125 5 LAGKRVLITGASKGI-GAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEA 71 (259)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence 467899999986553 333 3456889999987 444444443333221 2356777777766543
Q ss_pred cc---ccCCCccEEEEecC
Q 027659 138 IK---AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~---~~~~~fD~V~~~d~ 153 (220)
.. ...++.|+++.+.-
T Consensus 72 ~~~~~~~~g~id~lv~~ag 90 (259)
T PRK06125 72 REQLAAEAGDIDILVNNAG 90 (259)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 21 11256898887754
No 376
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.59 E-value=5.2 Score=33.18 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=46.6
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
...++++|=.|++.|+ |..++ +.|++|++++. .+.++.+...+... ...+.+...|..+.+
T Consensus 37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDLD 102 (293)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 3467889999986554 44433 45889999987 44444444333221 134667777776654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ..-+..|+|+.+.-
T Consensus 103 ~v~~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 103 AVDALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11247899988754
No 377
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.32 E-value=21 Score=28.78 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|+..| +|..+ ++.|++|+++|.+ +.++.+.. .. ..++.+...|..+.+.
T Consensus 4 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dl~~~~~ 66 (261)
T PRK08265 4 LAGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAA---SL-------------GERARFIATDITDDAA 66 (261)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hh-------------CCeeEEEEecCCCHHH
Confidence 46788999997554 34433 4558999999873 32222211 11 1256777888877653
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...+..|+++.+.-
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 21 11246899887754
No 378
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=80.31 E-value=0.98 Score=34.36 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCcEEEeCCcccHHHHHHHHhCCe-EEEecchh--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
|++.+=+|+..=.+=..+.+.||. |+.+++.. .-+..+..+..- ..+.+. -+|. ..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi--------------~p~df~-~~~~------~y 60 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSI--------------LPVDFA-KNWQ------KY 60 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccc--------------cHHHHH-HHHH------Hh
Confidence 577888888876666677777875 88888643 111111110000 000110 0121 12
Q ss_pred CCCccEEEEecC--------CCCC----ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659 142 APPFDYIIGTDV--------YAEH----LLEPLLQTIFALSGPKTTILLGYEIRST 185 (220)
Q Consensus 142 ~~~fD~V~~~d~--------y~~~----~~~~l~~~l~~~l~~~g~~~i~~~~r~~ 185 (220)
.++||++.+.-. |.+. --..-+..++.+||+||.++++.|.-.+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 456887766543 2221 1334566778889999999999886654
No 379
>PRK07035 short chain dehydrogenase; Provisional
Probab=80.20 E-value=8.7 Score=30.63 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=46.0
Q ss_pred CCCCCcEEEeCCcccHHHH---HHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l---~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.++++++|=.|++.|+-.- .+++.|++|++++. .+.++.+...+... ..++.+...|..+...
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~ 71 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA-------------GGKAEALACHIGEMEQ 71 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEcCCCCHHH
Confidence 3567889999988654322 23345889999997 44444443333221 1345666777766543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ..-++.|+++.+..
T Consensus 72 ~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 72 IDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899886553
No 380
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.10 E-value=7.6 Score=31.03 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
+++++|=.|++.|+ |.. ++..|++|+++|. ++-++.+...+... ..++.+...|..+.+..
T Consensus 4 ~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 4 KGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQC 69 (258)
T ss_pred CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHH
Confidence 56789988876544 443 3345889999997 43333333333221 23567788887665432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ..-+..|+|+.+..
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHHHHHHcCCccEEEECCc
Confidence 1 11246899988765
No 381
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.95 E-value=6.7 Score=31.69 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCCcEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
+++.+||=+|||. |. +...|++.|. +++.+|..
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4677999999985 44 4445667776 69999863
No 382
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=79.95 E-value=26 Score=28.98 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=51.4
Q ss_pred cEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659 67 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (220)
Q Consensus 67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 144 (220)
+|+=+|+|. +.++..+++.|.+|++.+.++-++.++ .++..+... ........-...+ .......
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~~------~~~~~~~~~~~~~---~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRSD------HGDAVVPGPVITD---PEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEeC------CCeEEecceeecC---HHHccCC
Confidence 577788886 335556666788899988733333322 222211100 0011110000011 1112367
Q ss_pred ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 145 FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 145 fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
+|+|+.+-. + ..+.+++.+...+.++..++...
T Consensus 69 ~d~vilavk~~---~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 69 FDLVILAVKAY---QLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred CCEEEEEeccc---CHHHHHHHHHhhcCCCCEEEEee
Confidence 898887766 4 36777788888787776555443
No 383
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=79.81 E-value=13 Score=31.70 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=62.7
Q ss_pred cEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659 67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (220)
Q Consensus 67 ~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~ 143 (220)
+|-=||+|. |. ++..+++.|..|+.-.. ++.++.+..+ ..|.. +-|+.....++.+. . ++.....
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~~----yLp~i~lp~~l~at-----~--Dl~~a~~ 70 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENPK----YLPGILLPPNLKAT-----T--DLAEALD 70 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCcc----ccCCccCCcccccc-----c--CHHHHHh
Confidence 566788886 43 55566667878887776 5555544333 22221 11111111122111 1 1111234
Q ss_pred CccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659 144 PFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 197 (220)
Q Consensus 144 ~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~ 197 (220)
.+|+|+.+-+ ...+...++.+...++++-.++.+.+--.++....+.+.+++
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e 122 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE 122 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH
Confidence 5888887766 223566777777778888888888775555443444444443
No 384
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=79.78 E-value=8.1 Score=30.28 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCCcEEEeCCcc-c-HHHHHHHHhCC-eEEEecch
Q 027659 63 LKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 63 ~~~~~vLELGcG~-G-~~~l~la~~g~-~v~~~D~~ 95 (220)
.++++||=+|||. | -+...++..|. +++.+|..
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3677999999985 2 23334445576 48899853
No 385
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.70 E-value=9.8 Score=30.19 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=42.5
Q ss_pred CcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~- 139 (220)
+++|=.|+. |.+|..++ +.|++|+++|. ++-.+.+..++.... ..++.+...|..+.....
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~~~ 68 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG------------AVAVSTHELDILDTASHAA 68 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEecCCCChHHHHH
Confidence 467878854 44555444 45889999987 443333333332221 246778887777654322
Q ss_pred ---ccCCCccEEEEec
Q 027659 140 ---AVAPPFDYIIGTD 152 (220)
Q Consensus 140 ---~~~~~fD~V~~~d 152 (220)
.....+|+++.+.
T Consensus 69 ~~~~~~~~~d~vv~~a 84 (243)
T PRK07102 69 FLDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHHhhcCCEEEECC
Confidence 1123579988754
No 386
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=79.69 E-value=9.2 Score=30.58 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
++++++|=.|++.|+ |..++ +.|++|+++|. ++.++.+...+... ..++.....|..+.+.
T Consensus 7 l~~k~~lItGas~gi-G~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~ 72 (254)
T PRK08085 7 LAGKNILITGSAQGI-GFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-------------GIKAHAAPFNVTHKQE 72 (254)
T ss_pred CCCCEEEEECCCChH-HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEecCCCCHHH
Confidence 467889999976544 44333 45889999997 34444333333221 1346667777776543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...+.+|+|+.+..
T Consensus 73 ~~~~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 73 VEAAIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 21 11246899988765
No 387
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.63 E-value=7 Score=31.59 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=46.7
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..+++++|=.|++ |.+|..++ ..|++|++++. ++.++.+...+... ..++.+...|..+..
T Consensus 7 ~~~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 7 RLDDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------------GRRAHVVAADLAHPE 72 (263)
T ss_pred cCCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 3578899999964 44555544 45889999987 44444443333221 235677777776654
Q ss_pred Cccc-------cCCCccEEEEecC
Q 027659 137 HIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~-------~~~~fD~V~~~d~ 153 (220)
.... .-+++|+|+.+..
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 73 ATAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 3210 1246899987653
No 388
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.59 E-value=9.3 Score=32.50 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=53.9
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCC-CCCCCceEEEEeeeCCCCCcccc
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-SDLLGSIQAVELDWGNEDHIKAV 141 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-~~~~~~v~~~~ldw~~~~~~~~~ 141 (220)
++|-=||+|+ | -.+..++..|.+|++.|. ++.++.++..+........+.... .....++++.. .+...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence 4688889886 3 244455677999999998 667766655554322111100000 00011222221 11111
Q ss_pred CCCccEEEEecCCCCCChHHHHHHHHHhhCCCc
Q 027659 142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKT 174 (220)
Q Consensus 142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g 174 (220)
-...|+|+-+-+...+.-..+++.+.+.++|+.
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDA 113 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe
Confidence 245688877644444444566677777777765
No 389
>PRK06720 hypothetical protein; Provisional
Probab=79.57 E-value=11 Score=28.79 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+++.+|=.|++.|+ +...+++.|++|+++|. .+.++.+...+... ...+.+..+|..+....
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~v 80 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL-------------GGEALFVSYDMEKQGDW 80 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence 467888888887654 23334456899999997 34443333333211 12455667776654322
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ..-+..|+++.+--
T Consensus 81 ~~~v~~~~~~~G~iDilVnnAG 102 (169)
T PRK06720 81 QRVISITLNAFSRIDMLFQNAG 102 (169)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246898888754
No 390
>PRK10458 DNA cytosine methylase; Provisional
Probab=79.52 E-value=3.9 Score=36.64 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHH
Q 027659 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~ 105 (220)
..+++||-||.|-+++.+-..|.+ |.++|. +.+.+..+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 568999999999999998888988 567898 55777777774
No 391
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.28 E-value=5.9 Score=30.56 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=27.5
Q ss_pred EEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH
Q 027659 68 VIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (220)
Q Consensus 68 vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~ 107 (220)
|-=+|+|+ | -++..+|..|.+|++.|. ++.++.+++.+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 45578887 4 355566677999999998 6688777776665
No 392
>PRK06194 hypothetical protein; Provisional
Probab=79.14 E-value=5.3 Score=32.64 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|++.| +|..+ ++.|++|+++|. .+.++.+...+... ..++.+...|..+.+.
T Consensus 4 ~~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~~ 69 (287)
T PRK06194 4 FAGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------------GAEVLGVRTDVSDAAQ 69 (287)
T ss_pred CCCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 35678997786543 44444 345889999997 34333332222211 2356777777766543
Q ss_pred ccc-------cCCCccEEEEecC
Q 027659 138 IKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~~-------~~~~fD~V~~~d~ 153 (220)
... ..+..|+|+.+.-
T Consensus 70 ~~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 70 VEALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 211 1246799988765
No 393
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.73 E-value=9.4 Score=31.82 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=47.9
Q ss_pred CCCCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
..++++++|=.|++.|+- +..+++.|++|+++|. + +.++.+...+... ..++.+...|..+.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~-------------g~~~~~~~~Dv~d~ 74 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA-------------GAKAVAVAGDISQR 74 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc-------------CCeEEEEeCCCCCH
Confidence 456889999999987653 2334456899999986 3 2333333333221 23567777777664
Q ss_pred CCccc------cCCCccEEEEecC
Q 027659 136 DHIKA------VAPPFDYIIGTDV 153 (220)
Q Consensus 136 ~~~~~------~~~~fD~V~~~d~ 153 (220)
+.... ..++.|+++.+--
T Consensus 75 ~~~~~~~~~~~~~g~iD~li~nAG 98 (306)
T PRK07792 75 ATADELVATAVGLGGLDIVVNNAG 98 (306)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 32210 0257899888754
No 394
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.64 E-value=23 Score=28.36 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=42.7
Q ss_pred CcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 66 KRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+++|=.|++. .+|..+ ++.|++|++++. ++.++.+...+. ..++.+...|..+......
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~ 65 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDA 65 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHH
Confidence 4677788764 344444 345889999986 444444433222 1357788888876543211
Q ss_pred --------cCCCccEEEEecC
Q 027659 141 --------VAPPFDYIIGTDV 153 (220)
Q Consensus 141 --------~~~~fD~V~~~d~ 153 (220)
..+++|+|+.+.-
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 66 ALADFAAATGGRLDVLFNNAG 86 (260)
T ss_pred HHHHHHHHcCCCCCEEEECCC
Confidence 1357899987654
No 395
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.58 E-value=7.8 Score=36.73 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=32.1
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=||+|+ +-++..+|..|.+|+..|. ++.++.++..+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~ 359 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKL 359 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4688899997 3355566778999999998 66877776666544
No 396
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.55 E-value=3.1 Score=34.28 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=38.7
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh
Q 027659 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (220)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~ 96 (220)
..|..||...... ....+.+|+.+.||-+|||++|-.+-+.|.+|++-|+..
T Consensus 8 ~~LlsFi~~~i~~--~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHE--VKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHH--HhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 4455666543311 013566888999999999999999999999999999743
No 397
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.50 E-value=6.9 Score=31.32 Aligned_cols=78 Identities=23% Similarity=0.184 Sum_probs=45.4
Q ss_pred CCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++++|=.|++.|+- ...+++.|++|++++. ++.++.+...+... ..++.+...|..+.+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 70 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE-------------GGEAVALAGDVRDEAYA 70 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 4677899888765432 2233455899999986 44444444333322 13566777777665432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ..-++.|+++.+.-
T Consensus 71 ~~~~~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 71 KALVALAVERFGGLDIAFNNAG 92 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 1 11247898887654
No 398
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=78.46 E-value=15 Score=28.37 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=22.8
Q ss_pred CCCCCcEEEeCC-cc-cH-HHHHHHHhCCeEEEecc
Q 027659 62 KLKGKRVIELGA-GC-GV-AGFGMALLGCNVITTDQ 94 (220)
Q Consensus 62 ~~~~~~vLELGc-G~-G~-~~l~la~~g~~v~~~D~ 94 (220)
.+++++++=+|+ |. |. ....+++.|++|+.++.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 457889999996 53 53 33344566888988875
No 399
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.42 E-value=10 Score=31.27 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=45.6
Q ss_pred CCCCcEEEeCCcccHHHH---HHHHhCCeEEEecc-h---------hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE
Q 027659 63 LKGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-I---------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l---~la~~g~~v~~~D~-~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ 129 (220)
.+++++|=.|++.|+-.- .+++.|++|+++|. . +.++.+...+... ..++.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~ 70 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA-------------GGEAVANG 70 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc-------------CCceEEEe
Confidence 467899999987765332 34456899988875 2 3233222222221 23566677
Q ss_pred eeeCCCCCcc-------ccCCCccEEEEecC
Q 027659 130 LDWGNEDHIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 130 ldw~~~~~~~-------~~~~~fD~V~~~d~ 153 (220)
.|..+.+... ..-++.|+++.+.-
T Consensus 71 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 71 DDIADWDGAANLVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7776654321 11257899888754
No 400
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=78.28 E-value=7.3 Score=35.34 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred CcEEEeCCcccHHHHHHHHh------CCeEEEecc-hhhHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 66 KRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~------g~~v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..|+=+|+|-|-+.-+..+. --++++++- |.++-.++ .|.+-- ..+|+....|.....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-------------~~~Vtii~~DMR~w~- 434 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-------------DNRVTIISSDMRKWN- 434 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-------------cCeeEEEeccccccC-
Confidence 35888999998765544332 235889997 66665554 343322 357888876655443
Q ss_pred ccccCCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEE
Q 027659 138 IKAVAPPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTIL 177 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~ 177 (220)
.+.++.|++++--. |. .+.-+..++-+.++|+|.|+.+
T Consensus 435 --ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 435 --APREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred --CchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 22478999987766 43 4556889999999999998765
No 401
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.22 E-value=9.5 Score=31.69 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCCcEEEeCCcccHHHHHHHH----hCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++||=.|+ +|.+|..+++ .|.+|++++.+ +.............. ..++.+...|..+....
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~ 70 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA-----------KERLHLFKANLLEEGSF 70 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC-----------CCceEEEeccccCcchH
Confidence 4678888885 5677776663 38888887752 211111111111110 23677888777765543
Q ss_pred cccCCCccEEEEecC
Q 027659 139 KAVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~ 153 (220)
...-..+|+|+-.-.
T Consensus 71 ~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 71 DSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHcCCCEEEEeCC
Confidence 322346798876543
No 402
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.66 E-value=7.5 Score=30.74 Aligned_cols=77 Identities=22% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|+ +|.+|..++ ..|++|++++. ++..+.+...+... ..++.+...|..+...
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~ 70 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------------GVKVVIATADVSDYEE 70 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCeEEEEECCCCCHHH
Confidence 35678888885 556666554 44889999987 34333333333221 2356777766655432
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...+..|.|+.+..
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 71 VTAAIEQLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHHHHHHHcCCccEEEEcCc
Confidence 21 11246898887654
No 403
>PRK09291 short chain dehydrogenase; Provisional
Probab=77.58 E-value=10 Score=30.18 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 65 GKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++++|=.|++.|+ |..++ +.|++|++++. ++..+.++...... ..++.+...|+.+.....
T Consensus 2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 67 (257)
T PRK09291 2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------------GLALRVEKLDLTDAIDRA 67 (257)
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcceEEEeeCCCHHHHH
Confidence 3578888885544 44443 45889998876 33333333322221 235788888888765432
Q ss_pred c-cCCCccEEEEecC
Q 027659 140 A-VAPPFDYIIGTDV 153 (220)
Q Consensus 140 ~-~~~~fD~V~~~d~ 153 (220)
. .....|+|+.+.-
T Consensus 68 ~~~~~~id~vi~~ag 82 (257)
T PRK09291 68 QAAEWDVDVLLNNAG 82 (257)
T ss_pred HHhcCCCCEEEECCC
Confidence 1 2347899988643
No 404
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.56 E-value=12 Score=30.28 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=43.3
Q ss_pred CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|++. -+|..+ +..|++|+++|. ++-++.....+... ..++.+..+|..+...
T Consensus 7 ~~~k~ilItGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~ 72 (264)
T PRK07576 7 FAGKNVVVVGGTS-GINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-------------GPEGLGVSADVRDYAA 72 (264)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEECCCCCHHH
Confidence 4678999998644 344433 345889999986 44333332222221 1245667777766443
Q ss_pred cc-------ccCCCccEEEEec
Q 027659 138 IK-------AVAPPFDYIIGTD 152 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d 152 (220)
.. ......|+++.+.
T Consensus 73 i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 73 VEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 21 1124689998764
No 405
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.54 E-value=8 Score=34.12 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=51.9
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
...|++|+=+|+|. |......++ .|++|+++|. +.-.+.++. .+. ..... .+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~---------------~~~~~-----~e- 253 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY---------------EVMTM-----EE- 253 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC---------------EEccH-----HH-
Confidence 45899999999997 776666654 5899999997 433333321 121 11111 01
Q ss_pred cccCCCccEEEEecCCCCCChHHHHH-HHHHhhCCCcEEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQ-TIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~-~l~~~l~~~g~~~i~~ 180 (220)
.-..+|+|+.+.- ....+. .....+++||+++.+.
T Consensus 254 --~v~~aDVVI~atG-----~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 --AVKEGDIFVTTTG-----NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred --HHcCCCEEEECCC-----CHHHHHHHHHhcCCCCcEEEEeC
Confidence 1235788886422 223333 3466789999887655
No 406
>PRK07806 short chain dehydrogenase; Provisional
Probab=77.33 E-value=34 Score=27.05 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..++++|=.|+..| +|..++ ..|.+|++++. . +.++.+...+... ..++.+...|..+.+
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 69 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEE 69 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence 46788999997543 444443 45888888765 2 2333332222211 235677777777654
Q ss_pred Ccc-------ccCCCccEEEEec
Q 027659 137 HIK-------AVAPPFDYIIGTD 152 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d 152 (220)
... ......|+|+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 70 SVAALMDTAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHHHHHHHHhCCCCcEEEECC
Confidence 321 1113688877654
No 407
>PRK09242 tropinone reductase; Provisional
Probab=77.25 E-value=14 Score=29.50 Aligned_cols=81 Identities=12% Similarity=0.216 Sum_probs=47.4
Q ss_pred CCCCCcEEEeCCcccHHHH---HHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l---~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.++++++|=.|++.|+-.. .+++.|++|++++. ++.++.+..++..... ..++.+...|..+...
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-----------EREVHGLAADVSDDED 74 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCCHHH
Confidence 3578899999986544222 23345889999986 4444444444433211 2356777777766543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ..-+++|+|+.+.-
T Consensus 75 ~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 75 RRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246898877654
No 408
>PRK07774 short chain dehydrogenase; Provisional
Probab=77.00 E-value=8.8 Score=30.49 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|+ +|.+|..++ +.|++|++++. ++.++.+...+... ..++.....|..+...
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 69 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------------GGTAIAVQVDVSDPDS 69 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence 36788998885 445555555 45889999997 33444443333211 1245666667665543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...+..|+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 21 11246899998665
No 409
>PRK06128 oxidoreductase; Provisional
Probab=76.92 E-value=41 Score=27.78 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=42.8
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecch-h--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
.+++++|=.|+..|+ |..++ +.|++|++++.+ + ..+.+.+.+... ..++.+...|..+.
T Consensus 53 l~~k~vlITGas~gI-G~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~ 118 (300)
T PRK06128 53 LQGRKALITGADSGI-GRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE-------------GRKAVALPGDLKDE 118 (300)
T ss_pred cCCCEEEEecCCCcH-HHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc-------------CCeEEEEecCCCCH
Confidence 567899999975544 44443 458898887652 2 122222222211 23566677777665
Q ss_pred CCcc-------ccCCCccEEEEecC
Q 027659 136 DHIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 136 ~~~~-------~~~~~fD~V~~~d~ 153 (220)
.... ..-++.|+++.+.-
T Consensus 119 ~~v~~~~~~~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 119 AFCRQLVERAVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 4321 11246899987764
No 410
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=76.92 E-value=25 Score=29.38 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCCCCcEEEeCCcccHHHHHH--HHhCC-eEEEecch
Q 027659 62 KLKGKRVIELGAGCGVAGFGM--ALLGC-NVITTDQI 95 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~l--a~~g~-~v~~~D~~ 95 (220)
..+++++|=||||--.-+++. +..|. +++.++..
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 357889999999864444433 34576 58888863
No 411
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=76.91 E-value=18 Score=31.21 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc
Q 027659 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~ 94 (220)
.|.+||=.|+|. |...+.+|+ .|++|+++|.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence 577888899876 777777775 5889888875
No 412
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.68 E-value=10 Score=29.78 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=28.4
Q ss_pred CCCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHH
Q 027659 61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLK 102 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~ 102 (220)
...+|++|+=+|.|. .|..+ .+.|++|+++|. ++.++.+.
T Consensus 24 ~~l~gk~v~I~G~G~--vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 24 DSLEGKTVAVQGLGK--VGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 567899999999984 44444 356899999997 44444443
No 413
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.66 E-value=11 Score=31.42 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=44.6
Q ss_pred CCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecch-----------hhHHHHHHHHHHhhhhhccCCCCCCCCCceE
Q 027659 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-----------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ 126 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~~-----------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~ 126 (220)
..+++.+|=.|++.|+ |..+ ++.|++|++++.. +.++.+.+.+... ..++.
T Consensus 5 ~l~~k~~lITGgs~GI-G~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~ 70 (305)
T PRK08303 5 PLRGKVALVAGATRGA-GRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA-------------GGRGI 70 (305)
T ss_pred CCCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc-------------CCceE
Confidence 3578899999987664 3333 3458899888752 2223232222221 23456
Q ss_pred EEEeeeCCCCCcc-------ccCCCccEEEEec
Q 027659 127 AVELDWGNEDHIK-------AVAPPFDYIIGTD 152 (220)
Q Consensus 127 ~~~ldw~~~~~~~-------~~~~~fD~V~~~d 152 (220)
+...|..+..... ...++.|++|.+.
T Consensus 71 ~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 71 AVQVDHLVPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 6777776654321 1124689888765
No 414
>PRK08324 short chain dehydrogenase; Validated
Probab=76.47 E-value=21 Score=33.52 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=44.7
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
...|+++|=.|++.| +|..++ +.|++|+++|. ++.++.+...+.. ..++.+...|..+..
T Consensus 419 ~l~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~--------------~~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 419 PLAGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG--------------PDRALGVACDVTDEA 483 (681)
T ss_pred CCCCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc--------------cCcEEEEEecCCCHH
Confidence 346789999987443 333333 45889999997 4433333222211 125677777776654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ...+.+|+|+.+--
T Consensus 484 ~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 484 AVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11246899988765
No 415
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.23 E-value=32 Score=27.03 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCCCcEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
.++..+|+=+|||. |. ++..+++.|. +++.+|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34678999999996 43 5566677787 59999864
No 416
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.16 E-value=13 Score=29.92 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+++++|=.|++.|+ |.. +++.|++|++++..+. +.+...++.. ..++.+...|..+.+..
T Consensus 6 l~~k~~lItGas~gI-G~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 70 (251)
T PRK12481 6 LNGKVAIITGCNTGL-GQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL-------------GRKFHFITADLIQQKDI 70 (251)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc-------------CCeEEEEEeCCCCHHHH
Confidence 468899999987654 333 3455899998876321 2222222211 23567777777665432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ...++.|+++.+.-
T Consensus 71 ~~~~~~~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 71 DSIVSQAVEVMGHIDILINNAG 92 (251)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246898887754
No 417
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.16 E-value=10 Score=35.96 Aligned_cols=43 Identities=30% Similarity=0.274 Sum_probs=32.1
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=||+|+ .-++..+|..|.+|+..|. ++.++.+...+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~ 359 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKL 359 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4688999998 3355566778999999998 66877766665543
No 418
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=76.13 E-value=10 Score=31.67 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=42.3
Q ss_pred CCCcEEEeCCcccHHHHHHHH----hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.+++||=.| |+|.+|..+++ .|.+|++++. ++............+. ..++.+...|..+....
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA-----------KERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC-----------CCceEEEeCCCCCchHH
Confidence 467899888 45666666653 4888887764 2222222111111110 23567777777665433
Q ss_pred cccCCCccEEEEecC
Q 027659 139 KAVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~ 153 (220)
...-...|+|+.+..
T Consensus 72 ~~~~~~~d~vih~A~ 86 (325)
T PLN02989 72 ELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHcCCCEEEEeCC
Confidence 222235798877654
No 419
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.93 E-value=18 Score=28.76 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHH
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNV 105 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~ 105 (220)
...+++++|=.|+ +|.+|..++ +.|++|+++|. ++.++.+...+
T Consensus 8 ~~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 8 DLLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred cccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 4568889999996 455555544 44889999997 44444443333
No 420
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.83 E-value=9.8 Score=30.72 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCc-ccHHHHHHH----HhCCeEEEecch---hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659 63 LKGKRVIELGAG-CGVAGFGMA----LLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (220)
Q Consensus 63 ~~~~~vLELGcG-~G~~~l~la----~~g~~v~~~D~~---~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~ 134 (220)
++++++|=.|+| ++-+|..+| +.|++|++++.+ +.++.+...+ ..++.+..+|..+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----------------~~~~~~~~~Dv~~ 68 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----------------PEPAPVLELDVTN 68 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----------------CCCCcEEeCCCCC
Confidence 467899999984 344555554 458999999853 2222222111 1235566777766
Q ss_pred CCCcc-------ccCCCccEEEEecC
Q 027659 135 EDHIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 135 ~~~~~-------~~~~~fD~V~~~d~ 153 (220)
.+... ...+++|+++.+.-
T Consensus 69 ~~~i~~~~~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 69 EEHLASLADRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEccc
Confidence 54321 11357899887654
No 421
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.47 E-value=7 Score=31.21 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=46.8
Q ss_pred CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
++++++|=.|++.|+ |..+ ++.|++|++++. ++-++.+...+... ..++.+...|..+...
T Consensus 5 l~~k~ilItGas~~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~ 70 (253)
T PRK06172 5 FSGKVALVTGGAAGI-GRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAE 70 (253)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHH
Confidence 467899999986544 3333 345889999987 44444444333322 2357778878776543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...+++|+|+.+..
T Consensus 71 i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 71 VKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 21 11246799987754
No 422
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.31 E-value=18 Score=30.40 Aligned_cols=107 Identities=22% Similarity=0.326 Sum_probs=68.5
Q ss_pred CcEEEeCCcccHHHHHHHHh-CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Ccc--
Q 027659 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIK-- 139 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~~-- 139 (220)
..|+-||||.=.=+--+-.. +..|.=+|+|++++.=++.+...+.. ....++++..|..+.. .+.
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~---------~~~~~~~Va~Dl~~~dw~~~L~~~ 164 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT---------PPAHRRLVAVDLREDDWPQALAAA 164 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC---------CCceEEEEeccccccchHHHHHhc
Confidence 67999999942111111111 34688889999888777777665531 1336677776665332 111
Q ss_pred -ccCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659 140 -AVAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYE 181 (220)
Q Consensus 140 -~~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~ 181 (220)
......-++++-.+ |.+ +....+++.|..++.||..++..+.
T Consensus 165 G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 11344557788777 654 4578999999999999988888764
No 423
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.18 E-value=9.1 Score=31.14 Aligned_cols=79 Identities=23% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+++++|=.|++.|+ +...+++.|++|+++|. ++..+.+...+... ..++.+...|..+...
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 73 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA-------------GGEALAVKADVLDKES 73 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 3467889989886544 22233345889999987 44444333333222 2356677777766543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ..-++.|+++.+.-
T Consensus 74 v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11247898887643
No 424
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=75.09 E-value=24 Score=27.94 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred CCCCCcEEEeCCcccHHHHHHHH-hCCe--EEEecchhhHHHH-HHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMAL-LGCN--VITTDQIEVLPLL-KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~-~g~~--v~~~D~~~~l~~~-~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
...|.+|+|+=-|.|..+-.++. .|++ |++.--.+..... +.--+.+..... ....|++...- ....
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e------~~~aN~e~~~~---~~~A 116 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE------PVYANVEVIGK---PLVA 116 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh------hhhhhhhhhCC---cccc
Confidence 34688999999999999999986 4554 5543211211111 000011100000 00111111110 0001
Q ss_pred ccccCCCccEEEEecC--------CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659 138 IKAVAPPFDYIIGTDV--------YAEHLLEPLLQTIFALSGPKTTILLGYEI 182 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~--------y~~~~~~~l~~~l~~~l~~~g~~~i~~~~ 182 (220)
+. ..+..|++..+-. .+......+-..+.+.|||||++.+..+.
T Consensus 117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 2344555544322 23455677888889999999999887653
No 425
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.07 E-value=10 Score=30.23 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCCcEEEeCCcccHHHHHHHH----hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
+++++|=.|+ +|.+|..+++ .|++|++++. ++..+.+...+... ..++.+...|..+....
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 68 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-------------GGKAIGVAMDVTDEEAI 68 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 4677887776 4556666654 4889999986 44444443333322 23677777777765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ...+.+|+|+.+--
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 69 NAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246899887654
No 426
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.01 E-value=8.3 Score=31.28 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCC-CcEEEeCCcccHHHHHHHHh--------CC---eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE
Q 027659 62 KLKG-KRVIELGAGCGVAGFGMALL--------GC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129 (220)
Q Consensus 62 ~~~~-~~vLELGcG~G~~~l~la~~--------g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ 129 (220)
.++| ++++||-+-.|..+.++++. +. +++++|+..|.+. .-|.-.+
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----------------------~GV~qlq 95 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----------------------EGVIQLQ 95 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----------------------CceEEee
Confidence 3444 57999999999999999964 12 3999997553221 1233344
Q ss_pred eeeCCCCCc-----cccCCCccEEEEecC---CCCCChHH------H---HHHHHHhhCCCcEEEE
Q 027659 130 LDWGNEDHI-----KAVAPPFDYIIGTDV---YAEHLLEP------L---LQTIFALSGPKTTILL 178 (220)
Q Consensus 130 ldw~~~~~~-----~~~~~~fD~V~~~d~---y~~~~~~~------l---~~~l~~~l~~~g~~~i 178 (220)
.|....... ....++.|+|+|-.. -...+++. | +.....+|+|||.|+-
T Consensus 96 ~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 96 GDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred cccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 444433211 122468899998654 11222222 2 2233445899998763
No 427
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=74.89 E-value=5.9 Score=33.59 Aligned_cols=90 Identities=14% Similarity=0.006 Sum_probs=50.9
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH--hC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL--LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~--~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..|.+||=+|||. |+..+.+++ .| ++|+++|. ++-++.++. .+. . ....++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--------------~-~~~~~~~---- 218 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--------------T-YLIDDIP---- 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--------------e-eehhhhh----
Confidence 3578999999987 877776665 34 46999997 444444432 110 0 0000111
Q ss_pred ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
....+|+|+-+- -. ...+..+....++++++|++++..
T Consensus 219 ---~~~g~d~viD~~-G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 219 ---EDLAVDHAFECV-GG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ---hccCCcEEEECC-CC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 012488887321 11 112345566667889999877653
No 428
>PRK08251 short chain dehydrogenase; Provisional
Probab=74.80 E-value=17 Score=28.82 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 65 GKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++++|=.|+ +|-+|..++ +.|++|++++. ++.++.+...+..... ..++.+...|..+.+...
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~ 69 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP-----------GIKVAVAALDVNDHDQVF 69 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEcCCCCHHHHH
Confidence 457888885 445555544 44888988886 4445444443332211 246788888887764321
Q ss_pred -------ccCCCccEEEEecC
Q 027659 140 -------AVAPPFDYIIGTDV 153 (220)
Q Consensus 140 -------~~~~~fD~V~~~d~ 153 (220)
...+..|+|+.+.-
T Consensus 70 ~~~~~~~~~~~~id~vi~~ag 90 (248)
T PRK08251 70 EVFAEFRDELGGLDRVIVNAG 90 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 11246898887653
No 429
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=74.76 E-value=17 Score=29.33 Aligned_cols=79 Identities=19% Similarity=0.131 Sum_probs=48.8
Q ss_pred CCCCCcEEEeCCcccHHH---HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~---l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+++++|=.|++.|+-. ..++..|++|++++. ++.++.+..++... ..++.+...|..+...
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 73 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL-------------GIEAHGYVCDVTDEDG 73 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHH
Confidence 447889999998875532 233456899998886 44444444444322 2357777888776543
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ..-++.|+++.+..
T Consensus 74 ~~~~~~~~~~~~~~id~li~~ag 96 (265)
T PRK07097 74 VQAMVSQIEKEVGVIDILVNNAG 96 (265)
T ss_pred HHHHHHHHHHhCCCCCEEEECCC
Confidence 21 11246899987765
No 430
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=74.73 E-value=11 Score=27.40 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCCCCcEEEeCCcc-cH-HHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGC-GV-AGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~-~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.++++++|=||+|- |. ....++..|++ |+.+.. .+-.+.+...+ . ...+.+. .|.+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~------------~~~~~~~--~~~~~~- 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---G------------GVNIEAI--PLEDLE- 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---T------------GCSEEEE--EGGGHC-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---C------------cccccee--eHHHHH-
Confidence 56899999999985 32 33344456876 888886 33222222222 1 1234443 343332
Q ss_pred ccccCCCccEEEEecC
Q 027659 138 IKAVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~ 153 (220)
.....+|+|+.+..
T Consensus 71 --~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 71 --EALQEADIVINATP 84 (135)
T ss_dssp --HHHHTESEEEE-SS
T ss_pred --HHHhhCCeEEEecC
Confidence 12357999999877
No 431
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=74.67 E-value=18 Score=28.89 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=47.1
Q ss_pred CCCCCCcEEEeCCcccHHHH---HHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l---~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
....+++||=.|+..|+-.- .++..|++|++++. .+.++.+...+... ..++.+...|..+.+
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 73 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSEQ 73 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 34578999999976654332 23345889988886 44444443333211 235667777777654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... .....+|+|+.+..
T Consensus 74 ~i~~~~~~~~~~~~~~d~li~~ag 97 (255)
T PRK06113 74 ELSALADFALSKLGKVDILVNNAG 97 (255)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11246898887654
No 432
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=74.55 E-value=6.9 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.9
Q ss_pred CCCCCCcEEEeCCc-c-cH-HHHHHHHhCCeEEEecc
Q 027659 61 SKLKGKRVIELGAG-C-GV-AGFGMALLGCNVITTDQ 94 (220)
Q Consensus 61 ~~~~~~~vLELGcG-~-G~-~~l~la~~g~~v~~~D~ 94 (220)
..+.|++||=+|+| + |. ++-.|...|++|+.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 46799999999999 3 77 55566677889888885
No 433
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=74.32 E-value=13 Score=31.85 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=24.8
Q ss_pred CCCCCcEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
.+++++||=+|||. |. ++..|++.|. +++.+|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45778999999995 33 4555667786 69999863
No 434
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=74.14 E-value=22 Score=29.58 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=42.1
Q ss_pred chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh
Q 027659 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (220)
Q Consensus 40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~ 96 (220)
+|++.|-+-+...+.....+....+|+...|||+-.|-.+-.+-+++-.|+++|...
T Consensus 187 RStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ 243 (358)
T COG2933 187 RSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP 243 (358)
T ss_pred hhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccch
Confidence 356666665554443333334556889999999999999999999999999999744
No 435
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.13 E-value=5.3 Score=34.88 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=25.1
Q ss_pred cEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHH
Q 027659 67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLK 102 (220)
Q Consensus 67 ~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~ 102 (220)
+|-=+|+|. |+ .|.++|..|.+|+++|+ ++-++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 455677776 65 34566788999999998 44555553
No 436
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=73.93 E-value=20 Score=30.98 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh----------CCeEEEecchhhHHHHHHHHHH
Q 027659 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKRNVEW 107 (220)
Q Consensus 42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~----------g~~v~~~D~~~~l~~~~~n~~~ 107 (220)
+..++.|+.+.... -.....-.++|||+|.|.+.--+.+. ..++..++.++-+...+++.-.
T Consensus 59 Gella~~~~~~wq~----~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 59 GELLAEQFLQLWQE----LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred HHHHHHHHHHHHHH----hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 44566666554210 01112347999999999988765532 3468899986655555554433
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.83 E-value=10 Score=29.73 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=24.6
Q ss_pred CCCCCcEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
.+++++||=+|||. |. +...++..|. +++.+|..
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 34678999999995 33 4555666786 69999863
No 438
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.58 E-value=14 Score=29.87 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhC-CeEEEecc-hh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLG-CNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g-~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.+++||=.|+..|+ |..++ +.| ++|++++. ++ .++.+.+.+...+ ..++.+..+|..+..
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG------------ASSVEVIDFDALDTD 73 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC------------CCceEEEEecCCChH
Confidence 56789999996554 44444 344 78999986 33 2454444443322 136788888887654
Q ss_pred Ccc----c--cCCCccEEEEecC
Q 027659 137 HIK----A--VAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~----~--~~~~fD~V~~~d~ 153 (220)
... . ..+..|+++.+--
T Consensus 74 ~~~~~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeee
Confidence 311 0 1247998876543
No 439
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.58 E-value=15 Score=30.45 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred CCCCCcEEEeCC-c-ccHHHHHHHH-hCCeEEEecc-hhhHHHHH
Q 027659 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (220)
Q Consensus 62 ~~~~~~vLELGc-G-~G~~~l~la~-~g~~v~~~D~-~~~l~~~~ 102 (220)
..+|.+||=.|+ | .|...+.+|+ .|++|++++. ++-.+.++
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~ 185 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK 185 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 346788888884 3 3767776665 5889988875 44444443
No 440
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=73.51 E-value=15 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCCCCcEEEeCCcc-cH-HHHHHHHhC-CeEEEecch
Q 027659 62 KLKGKRVIELGAGC-GV-AGFGMALLG-CNVITTDQI 95 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~-~~l~la~~g-~~v~~~D~~ 95 (220)
.+++.+|+=+|||. |. ++..||+.| .+++.+|..
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34778999999995 44 445566777 469999863
No 441
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=73.50 E-value=12 Score=31.63 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=27.2
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLK 102 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~~ 102 (220)
..++.+||=.|+|. |...+.+|+ .|++ |+++|. ++-.+.++
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34678888888875 666666665 4774 888987 44444443
No 442
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=73.45 E-value=14 Score=30.66 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=26.9
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHH
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~ 106 (220)
++|-=||+|. | .++..++..|.+|++.|. ++.++.+++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3577788885 3 344455566889999997 556665555443
No 443
>PRK05650 short chain dehydrogenase; Provisional
Probab=73.36 E-value=9.3 Score=30.96 Aligned_cols=73 Identities=18% Similarity=0.026 Sum_probs=41.3
Q ss_pred cEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc--
Q 027659 67 RVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 139 (220)
Q Consensus 67 ~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-- 139 (220)
+||=.|+.. .+|..+ ++.|++|++++. .+-++.+...+... ..++.+...|..+.....
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-------------GGDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHH
Confidence 567677644 344444 345889999986 33333333333322 235677777877654321
Q ss_pred -----ccCCCccEEEEecC
Q 027659 140 -----AVAPPFDYIIGTDV 153 (220)
Q Consensus 140 -----~~~~~fD~V~~~d~ 153 (220)
.....+|+++.+.-
T Consensus 68 ~~~i~~~~~~id~lI~~ag 86 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 11246899888754
No 444
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.36 E-value=18 Score=30.26 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=27.3
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHH
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNV 105 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~ 105 (220)
++|.=||+|. +.++..+++.|.+|++.|. ++.++.++..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 3577788886 3344555566889999997 55666666544
No 445
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=73.24 E-value=7.8 Score=36.85 Aligned_cols=43 Identities=23% Similarity=0.104 Sum_probs=32.2
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=||+|+ | -++..+|..|.+|+..|. ++.++.....+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~ 381 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKG 381 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHH
Confidence 4688899997 3 345566677999999998 66888777666554
No 446
>PRK12939 short chain dehydrogenase; Provisional
Probab=73.12 E-value=16 Score=28.91 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|+. |.+|..++ +.|++|++++. ++.++.+...++.. ..++.+...|..+.+.
T Consensus 5 ~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 70 (250)
T PRK12939 5 LAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------------GGRAHAIAADLADPAS 70 (250)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence 467889988864 45555554 45889998886 44333333333211 2357777877776543
Q ss_pred ccc-------cCCCccEEEEecC
Q 027659 138 IKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~~-------~~~~fD~V~~~d~ 153 (220)
... .-++.|+|+.+.-
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 211 1146898887653
No 447
>PRK12937 short chain dehydrogenase; Provisional
Probab=72.95 E-value=44 Score=26.26 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=43.1
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.+++++|=.|+.. .+|..++ +.|++|+++.. +...+.+.+.+... ..++.+...|..+..
T Consensus 3 ~~~~~vlItG~~~-~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 68 (245)
T PRK12937 3 LSNKVAIVTGASR-GIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA-------------GGRAIAVQADVADAA 68 (245)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 3677899999854 4444444 45888877754 22333333333222 235777777776654
Q ss_pred Cccc-------cCCCccEEEEecC
Q 027659 137 HIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~-------~~~~fD~V~~~d~ 153 (220)
.... ..++.|+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 69 AVTRLFDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 3211 1246898887654
No 448
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.85 E-value=8.5 Score=32.29 Aligned_cols=39 Identities=38% Similarity=0.521 Sum_probs=25.0
Q ss_pred CCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~ 102 (220)
.+.+||-.|+|. |...+.+|+ .|. .|++++. ++..+.++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 577888888764 666666665 475 6888876 33444443
No 449
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.79 E-value=25 Score=29.91 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc
Q 027659 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~ 94 (220)
..|.+||=.|+|. |...+.+|+ .|++|++++.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 3677888888875 777776665 4788777765
No 450
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.60 E-value=13 Score=27.36 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=25.9
Q ss_pred EeCCccc--HHHHHHH--Hh--CCeEEEecc-hhhHHHHHHH--HHHhh
Q 027659 70 ELGAGCG--VAGFGMA--LL--GCNVITTDQ-IEVLPLLKRN--VEWNT 109 (220)
Q Consensus 70 ELGcG~G--~~~l~la--~~--g~~v~~~D~-~~~l~~~~~n--~~~n~ 109 (220)
|+|+..| ......+ .. +.+|+++|- +..++.+++| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 4444332 23 457999997 7789999999 66663
No 451
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=72.60 E-value=2.2 Score=36.03 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=33.5
Q ss_pred CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHH
Q 027659 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 107 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~ 107 (220)
.++...+|.--|.|--+..+... +.+|++.|. +++++.+++++..
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~ 66 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK 66 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh
Confidence 35678999999998888888764 468999998 7799888776653
No 452
>PRK05872 short chain dehydrogenase; Provisional
Probab=72.53 E-value=14 Score=30.56 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=45.0
Q ss_pred CCCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.++++++|=.|++.|+ |.. +++.|++|++++. ++.++.+.+.+.. ...+.....|..+.+
T Consensus 6 ~l~gk~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------------~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 6 SLAGKVVVVTGAARGI-GAELARRLHARGAKLALVDLEEAELAALAAELGG--------------DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------------CCcEEEEEecCCCHH
Confidence 4578899999976554 333 3355889999987 3433333222210 124555567777654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ...++.|+|+.+.-
T Consensus 71 ~v~~~~~~~~~~~g~id~vI~nAG 94 (296)
T PRK05872 71 AMQAAAEEAVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11257899998765
No 453
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=72.48 E-value=23 Score=28.49 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=46.0
Q ss_pred CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..+++++|=.|++.|+ ++..+++.|++|+++.. ++.++.+...++... ..++.+...|..+.+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~ 72 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY------------GIKAKAYPLNILEPE 72 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHH
Confidence 4578899999987654 23334456899888753 333443333332210 236777888877654
Q ss_pred Ccc-------ccCCCccEEEEec
Q 027659 137 HIK-------AVAPPFDYIIGTD 152 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d 152 (220)
... ..-+++|+++.+-
T Consensus 73 ~~~~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 73 TYKELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHHHHHHHhcCCccEEEECc
Confidence 321 1124689888765
No 454
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=72.45 E-value=36 Score=27.45 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=27.0
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~ 101 (220)
..++.++|=.|||. |...+.+|+ .|.+ |++++. ++-.+.+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~ 138 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELA 138 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHH
Confidence 34678888888875 666666664 4777 999986 4444433
No 455
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.29 E-value=19 Score=28.96 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=43.7
Q ss_pred CCCCCcEEEeCCccc-HHHHH----HHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659 62 KLKGKRVIELGAGCG-VAGFG----MALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (220)
Q Consensus 62 ~~~~~~vLELGcG~G-~~~l~----la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~ 135 (220)
..+|+.+|=.|++.| -+|.. +++.|++|+++|.. +..+.+++-.+.. ..+.+..+|..+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~ 72 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--------------DAPIFLPLDVREP 72 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--------------ccceEEecCcCCH
Confidence 457899999998752 34444 44568999988863 2323222221111 1234556666665
Q ss_pred CCcc-------ccCCCccEEEEecC
Q 027659 136 DHIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 136 ~~~~-------~~~~~fD~V~~~d~ 153 (220)
+... ..-++.|+++.+.-
T Consensus 73 ~~v~~~~~~~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 73 GQLEAVFARIAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcCc
Confidence 4321 11256899887754
No 456
>PRK06197 short chain dehydrogenase; Provisional
Probab=72.00 E-value=23 Score=29.29 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=45.3
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
..++++||=.|+..| +|..++ +.|++|++++. .+..+.+...+..... ..++.+...|..+.+
T Consensus 13 ~~~~k~vlItGas~g-IG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 13 DQSGRVAVVTGANTG-LGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP-----------GADVTLQELDLTSLA 80 (306)
T ss_pred cCCCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCHH
Confidence 457788998886543 444444 45889888875 3433333333321110 235677777776654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ....+.|+|+.+.-
T Consensus 81 ~v~~~~~~~~~~~~~iD~li~nAg 104 (306)
T PRK06197 81 SVRAAADALRAAYPRIDLLINNAG 104 (306)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCc
Confidence 321 11246899887764
No 457
>PRK06181 short chain dehydrogenase; Provisional
Probab=71.80 E-value=37 Score=27.16 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=42.1
Q ss_pred CcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~ 140 (220)
+++|=.|+. |.+|..++ ..|++|++++. ++..+.+...+... ..++.+...|..+......
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~ 67 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACER 67 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHH
Confidence 467777754 44555444 45889999987 33334333333221 2356777777766543211
Q ss_pred -------cCCCccEEEEecC
Q 027659 141 -------VAPPFDYIIGTDV 153 (220)
Q Consensus 141 -------~~~~fD~V~~~d~ 153 (220)
.-...|+|+.+..
T Consensus 68 ~~~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAG 87 (263)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 1236899988754
No 458
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=71.65 E-value=19 Score=29.64 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhh
Q 027659 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT 109 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~ 109 (220)
...+..|||-=+|+|..++++.+.|-..++.|+ ++.++.+.+.+....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 447789999999999999999999999999998 677887777766543
No 459
>PRK07677 short chain dehydrogenase; Provisional
Probab=71.29 E-value=19 Score=28.73 Aligned_cols=75 Identities=27% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCcEEEeCCcccHHH---HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659 65 GKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (220)
Q Consensus 65 ~~~vLELGcG~G~~~---l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~- 139 (220)
|+++|=.|++.|+-. ..+++.|++|++++. ++.++.+...+... ..++.+...|..+.+...
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF-------------PGQVLTVQMDVRNPEDVQK 67 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHHHH
Confidence 467888888665422 223355889999986 33444333333221 135677777776644321
Q ss_pred ------ccCCCccEEEEec
Q 027659 140 ------AVAPPFDYIIGTD 152 (220)
Q Consensus 140 ------~~~~~fD~V~~~d 152 (220)
..-++.|+|+.+.
T Consensus 68 ~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 68 MVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHhCCccEEEECC
Confidence 1124689988765
No 460
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.22 E-value=30 Score=30.68 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=62.4
Q ss_pred cEEEeC---Cc----ccHHHHHHHHhCCe--EEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC-
Q 027659 67 RVIELG---AG----CGVAGFGMALLGCN--VITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN- 134 (220)
Q Consensus 67 ~vLELG---cG----~G~~~l~la~~g~~--v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~- 134 (220)
.||=+| +| +|-++..+.+.|.+ ++++|. |.+++.++....+.+. .+...+-+.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v---------------~~f~~~~~~~ 166 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV---------------PFFGSGTEKD 166 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC---------------ceecCCCCCC
Confidence 466665 44 35556666666776 788894 6799999998876643 333321111
Q ss_pred CCCc------cccCCCccEEEEecCCCCCChHHHHH---HHHHhhCCCcEEEEEEEecCch
Q 027659 135 EDHI------KAVAPPFDYIIGTDVYAEHLLEPLLQ---TIFALSGPKTTILLGYEIRSTS 186 (220)
Q Consensus 135 ~~~~------~~~~~~fD~V~~~d~y~~~~~~~l~~---~l~~~l~~~g~~~i~~~~r~~~ 186 (220)
+... ......||+|+.--.-....=+.|+. .++..++|.-++++....-..+
T Consensus 167 Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 167 PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 1000 01245789998765511111244544 4556689999999988765554
No 461
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=71.18 E-value=21 Score=28.27 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=44.9
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++++|=.|++.| +|..++ +.|++|++++..+. +.+...+... ..++.+...|..+.+..
T Consensus 3 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 67 (248)
T TIGR01832 3 LEGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEP-SETQQQVEAL-------------GRRFLSLTADLSDIEAI 67 (248)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHhc-------------CCceEEEECCCCCHHHH
Confidence 47889999998655 344444 45889999986331 2222222211 23567777777765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ...+..|+|+.+.-
T Consensus 68 ~~~~~~~~~~~~~~d~li~~ag 89 (248)
T TIGR01832 68 KALVDSAVEEFGHIDILVNNAG 89 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246899987754
No 462
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=70.99 E-value=33 Score=28.95 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=51.1
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE--EeeeCCCCCcccc
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV--ELDWGNEDHIKAV 141 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~--~ldw~~~~~~~~~ 141 (220)
++|.=+|+|. +.++..+++.|.+|++.|.++..+.+ ..++....... ....... .+..... . ..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~----~~~g~~~~~~~-----~~~~~~~~~~~~~~~~--~-~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDEL----RAHGLTLTDYR-----GRDVRVPPSAIAFSTD--P-AA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHH----HhcCceeecCC-----CcceecccceeEeccC--h-hh
Confidence 3577788886 45666666778889999974422222 22332111000 0000000 0000111 1 12
Q ss_pred CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
...+|+|+.+-. +. ...+++.+...++++..++..
T Consensus 71 ~~~~D~vil~vk~~~---~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 71 LATADLVLVTVKSAA---TADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred ccCCCEEEEEecCcc---hHHHHHHHHhhCCCCCEEEEe
Confidence 357899987765 43 456677777777777654433
No 463
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=70.87 E-value=50 Score=27.53 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 64 ~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++.+||-.|||. |...+.+|+ .|. +|++++. ++..+.++. ...+.. +.....++ ....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~~v--------------i~~~~~~~---~~~~ 226 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGADET--------------VNLARDPL---AAYA 226 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCCEE--------------EcCCchhh---hhhh
Confidence 788898898875 666665664 587 7899986 444443332 110000 00000000 0111
Q ss_pred ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659 140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG 179 (220)
Q Consensus 140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~ 179 (220)
.....+|+|+.+-- ....+..+.+.|+++|+++..
T Consensus 227 ~~~~~vd~vld~~g-----~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 227 ADKGDFDVVFEASG-----APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ccCCCccEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 11245899986421 123456667778888887754
No 464
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=70.81 E-value=9.6 Score=32.03 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=25.3
Q ss_pred CcEEEeCC-c-ccHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659 66 KRVIELGA-G-CGVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (220)
Q Consensus 66 ~~vLELGc-G-~G~~~l~la~-~g~-~v~~~D~-~~~l~~~~ 102 (220)
.+||=.|+ | .|...+.+|+ .|+ +|++++. ++-.+.++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~ 197 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLK 197 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 78988886 3 4777777775 588 7999876 44344443
No 465
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.65 E-value=27 Score=29.27 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=27.3
Q ss_pred cEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHH
Q 027659 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (220)
Q Consensus 67 ~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~ 106 (220)
+|.=+|+|. | .++..+++.|.+|++.|. ++.++.++..++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~ 46 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIA 46 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHH
Confidence 577788875 3 345555667889999998 556666655444
No 466
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.52 E-value=13 Score=29.72 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCcc-c-HHHHHHHHhCC-eEEEecc
Q 027659 63 LKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQ 94 (220)
Q Consensus 63 ~~~~~vLELGcG~-G-~~~l~la~~g~-~v~~~D~ 94 (220)
.++++|+=+|||. | .+...|++.|. +++.+|.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4678999999995 3 34455566676 5888875
No 467
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.50 E-value=19 Score=28.52 Aligned_cols=34 Identities=35% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCCCcEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
..++.+|+=+|||. |. +...+++.|. +++.+|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34678999999985 43 5556667776 49999864
No 468
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.41 E-value=15 Score=34.81 Aligned_cols=43 Identities=21% Similarity=0.063 Sum_probs=30.9
Q ss_pred CcEEEeCCcc-c-HHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC-G-VAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=||+|+ | -++..+| ..|.+|+..|. ++.++.++.++...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~ 356 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDL 356 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5788999997 3 2444455 66999999998 66777776666543
No 469
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=70.39 E-value=10 Score=32.97 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=45.3
Q ss_pred CCCCCCcEEEeCCcccHHHHHHHH----hCCeEEEecchh-hHHH--HHHHHHHhhhhhccCCCCCCCCCceEEEEeeeC
Q 027659 61 SKLKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPL--LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~~~-~l~~--~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~ 133 (220)
...++++||=.| |+|.+|..+++ .|.+|++++.+. -... ........ ..++++...|+.
T Consensus 56 ~~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~-------------~~~v~~v~~Dl~ 121 (390)
T PLN02657 56 KEPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE-------------LPGAEVVFGDVT 121 (390)
T ss_pred cCCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh-------------cCCceEEEeeCC
Confidence 345678999988 57787777663 488899988632 1110 00111100 135788888888
Q ss_pred CCCCcccc-CC---CccEEEEe
Q 027659 134 NEDHIKAV-AP---PFDYIIGT 151 (220)
Q Consensus 134 ~~~~~~~~-~~---~fD~V~~~ 151 (220)
+.+.+... .+ .+|+|+.+
T Consensus 122 d~~~l~~~~~~~~~~~D~Vi~~ 143 (390)
T PLN02657 122 DADSLRKVLFSEGDPVDVVVSC 143 (390)
T ss_pred CHHHHHHHHHHhCCCCcEEEEC
Confidence 76543211 11 68999864
No 470
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=70.16 E-value=31 Score=32.11 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=47.7
Q ss_pred CCCcEEEeCCcccHHHHHHH--HhCC-eEEEecchhhHHHHH---HHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 64 KGKRVIELGAGCGVAGFGMA--LLGC-NVITTDQIEVLPLLK---RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la--~~g~-~v~~~D~~~~l~~~~---~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
+..+|+=||.|.....+..+ ..|. ++.++|.+.+..++. +-++.... . ..++.+..++-.....
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~----~------n~~v~v~~i~~~~~~d 197 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE----T------DDALLVQEIDFAEDQH 197 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH----h------CCCCceEeccCCcchh
Confidence 67899999999866555544 4565 466765433222221 21111111 0 2355555544322223
Q ss_pred ccccCCCccEEEEecC-CCCCChHHHHH
Q 027659 138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQ 164 (220)
Q Consensus 138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~ 164 (220)
....-+.||+|++.-- |.......+-.
T Consensus 198 l~ev~~~~DiVi~vsDdy~~~~Lr~lN~ 225 (637)
T TIGR03693 198 LHEAFEPADWVLYVSDNGDIDDLHALHA 225 (637)
T ss_pred HHHhhcCCcEEEEECCCCChHHHHHHHH
Confidence 3333468999998766 66554433333
No 471
>PRK08643 acetoin reductase; Validated
Probab=69.72 E-value=21 Score=28.49 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659 65 GKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (220)
Q Consensus 65 ~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~ 139 (220)
++++|=.|+..| +|..+ ++.|++|+++|. ++.++.+...+... ..++.+...|..+.+...
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 67 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD-------------GGKAIAVKADVSDRDQVF 67 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHHH
Confidence 457787786554 44433 345889999997 44444444433322 135667777777654321
Q ss_pred -------ccCCCccEEEEecC
Q 027659 140 -------AVAPPFDYIIGTDV 153 (220)
Q Consensus 140 -------~~~~~fD~V~~~d~ 153 (220)
...++.|+++.+.-
T Consensus 68 ~~~~~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 68 AAVRQVVDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 11246898887654
No 472
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.71 E-value=11 Score=29.64 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCCCcEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 63 ~~~~~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
.++.+||=+|||. |. +...++..|. +++.+|..
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3567999999995 32 3334445576 48888853
No 473
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=69.35 E-value=12 Score=31.73 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLL 101 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~ 101 (220)
...|.+||=+|||. |...+.+|+ .|++|+++|. ++-++.+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 34678999999976 777777775 4888999987 4544444
No 474
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.30 E-value=17 Score=30.87 Aligned_cols=97 Identities=23% Similarity=0.178 Sum_probs=49.1
Q ss_pred CCCCcEEEeCCc--ccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 63 LKGKRVIELGAG--CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 63 ~~~~~vLELGcG--~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
..|.+||=.|+. .|..++-+|+ +|+.++++-. ++-.+.+++ .+. ..-+.+...||.+.-..
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGA-----------d~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGA-----------DHVINYREEDFVEQVRE 205 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCC-----------CEEEcCCcccHHHHHHH
Confidence 358899999953 3777777776 4766555543 432222222 221 11223333333322111
Q ss_pred cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659 139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY 180 (220)
Q Consensus 139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~ 180 (220)
......+|+|+-.- -.+.+......|+++|.++...
T Consensus 206 ~t~g~gvDvv~D~v------G~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 206 LTGGKGVDVVLDTV------GGDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred HcCCCCceEEEECC------CHHHHHHHHHHhccCCEEEEEe
Confidence 11234699998432 2333444555677777766543
No 475
>PRK06114 short chain dehydrogenase; Provisional
Probab=69.04 E-value=26 Score=28.04 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.+++++|=.|++.| +|..++ +.|++|+++|. ++ .++.+.+.+... ..++.+...|..+..
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 71 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA-------------GRRAIQIAADVTSKA 71 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence 57889998886654 455444 45889999986 32 334333333321 235667777776654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ...++.|+++.+.-
T Consensus 72 ~i~~~~~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 72 DLRAAVARTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11256899988765
No 476
>PLN02253 xanthoxin dehydrogenase
Probab=68.68 E-value=15 Score=29.86 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
...++++|=.|+..| +|..++ +.|++|+++|. ++..+.+...+. . ..++.+...|..+..
T Consensus 15 ~l~~k~~lItGas~g-IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~Dl~d~~ 79 (280)
T PLN02253 15 RLLGKVALVTGGATG-IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---G-----------EPNVCFFHCDVTVED 79 (280)
T ss_pred ccCCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---C-----------CCceEEEEeecCCHH
Confidence 456888999886544 444444 45889999986 333332222221 0 235777788877654
Q ss_pred Cccc-------cCCCccEEEEecC
Q 027659 137 HIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~-------~~~~fD~V~~~d~ 153 (220)
.... ..++.|+++.+.-
T Consensus 80 ~~~~~~~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 80 DVSRAVDFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 3211 1246898887653
No 477
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=68.64 E-value=17 Score=28.69 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
+++++|=.|+.. .+|..++ +.|++|++++. .+..+.+...+... ..++.+...|..+.+..
T Consensus 2 ~~~~ilItGas~-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~ 67 (250)
T TIGR03206 2 KDKTAIVTGGGG-GIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK-------------GGNAQAFACDITDRDSV 67 (250)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 567888888654 4454444 44889999987 33444343333322 23577777777665432
Q ss_pred cc-------cCCCccEEEEecC
Q 027659 139 KA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~~-------~~~~fD~V~~~d~ 153 (220)
.. ...+.|+|+.+..
T Consensus 68 ~~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 68 DTAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 11 1246798877664
No 478
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.40 E-value=34 Score=30.50 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCCCCcEEEeCCcc-cHHHH-HHHHhCCeEEEecc
Q 027659 62 KLKGKRVIELGAGC-GVAGF-GMALLGCNVITTDQ 94 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l-~la~~g~~v~~~D~ 94 (220)
..++++|+=+|+|. |+... .+++.|.+|+++|.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDD 47 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 34678999999985 55322 33356889999996
No 479
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=68.27 E-value=69 Score=26.62 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCCCCcEEEeCCcc-cHH-HHHHHHhCC-eEEEecc
Q 027659 62 KLKGKRVIELGAGC-GVA-GFGMALLGC-NVITTDQ 94 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~-~l~la~~g~-~v~~~D~ 94 (220)
..++++|+=||||- |.. ...++..|. +|+.+|.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 34678999999996 332 223345676 6999997
No 480
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=68.00 E-value=81 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=23.1
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHH
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPL 100 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~ 100 (220)
++|-=+|.|. | ..+..+++.|.+|++.|. ++.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 4567778775 3 244445567889999998 455554
No 481
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=67.99 E-value=17 Score=32.97 Aligned_cols=43 Identities=28% Similarity=0.234 Sum_probs=31.2
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=||+|+ | -++..+++.|.+|++.|. ++.++.+..+++.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~ 51 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEAR 51 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4678889987 4 355566677999999998 66777766665543
No 482
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.84 E-value=24 Score=31.16 Aligned_cols=31 Identities=52% Similarity=0.854 Sum_probs=23.1
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecch
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI 95 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~~ 95 (220)
.++++|+=+|+|. .|+.+| ..|++|+++|..
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 3678999999886 444444 459999999973
No 483
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.72 E-value=17 Score=28.65 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=45.2
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
.++++|=.|+ +|.+|..++ +.|.+|++++. ++..+.+...+... ..++.+...|..+.+..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 70 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-------------GVKAAAYSIDLSNPEAI 70 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-------------CCcEEEEEccCCCHHHH
Confidence 4567888885 455555555 45889999997 33333333333211 23577778887765432
Q ss_pred c-------ccCCCccEEEEecC
Q 027659 139 K-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 139 ~-------~~~~~fD~V~~~d~ 153 (220)
. ....+.|+|+.+.-
T Consensus 71 ~~~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 71 APGIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246899988765
No 484
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=67.62 E-value=21 Score=28.61 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=40.9
Q ss_pred cEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc---
Q 027659 67 RVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 139 (220)
Q Consensus 67 ~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~--- 139 (220)
++|=.|++.|+- +..+++.|++|++++. ++.++.+...+... .++.+...|..+.+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~Dv~d~~~~~~~~ 67 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY--------------GEVYAVKADLSDKDDLKNLV 67 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEcCCCCHHHHHHHH
Confidence 577778765542 2233456899999986 44444443333221 24567777776654321
Q ss_pred ----ccCCCccEEEEec
Q 027659 140 ----AVAPPFDYIIGTD 152 (220)
Q Consensus 140 ----~~~~~fD~V~~~d 152 (220)
...++.|+++.+.
T Consensus 68 ~~~~~~~g~id~li~na 84 (259)
T PRK08340 68 KEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 1125689888764
No 485
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=67.45 E-value=23 Score=28.28 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=43.2
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
..+|+.+|=.|+..| +|..++ +.|++|+++|..+. +...+.+... ..++.+...|..+.+.
T Consensus 7 ~l~~k~~lItG~~~g-IG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 71 (253)
T PRK08993 7 SLEGKVAVVTGCDTG-LGQGMALGLAEAGCDIVGINIVEP-TETIEQVTAL-------------GRRFLSLTADLRKIDG 71 (253)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEecCcch-HHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 357889999998654 444444 45899999886332 1112222211 1245666766665433
Q ss_pred cc-------ccCCCccEEEEecC
Q 027659 138 IK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~-------~~~~~fD~V~~~d~ 153 (220)
.. ...++.|+++.+.-
T Consensus 72 ~~~~~~~~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 72 IPALLERAVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 21 11246898887654
No 486
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=67.35 E-value=31 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCCCcEEEeCCcc-cHHH-HHHHHhCCeEEEec
Q 027659 62 KLKGKRVIELGAGC-GVAG-FGMALLGCNVITTD 93 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~-l~la~~g~~v~~~D 93 (220)
..+|++||=+|+|. |..- -.+...|++|+.++
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 35889999999986 4322 23445688888886
No 487
>PRK05599 hypothetical protein; Provisional
Probab=67.30 E-value=28 Score=27.76 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred cEEEeCCcccHHHHHHHH---hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc---
Q 027659 67 RVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 139 (220)
Q Consensus 67 ~vLELGcG~G~~~l~la~---~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~--- 139 (220)
.+|=.|++.|+ |..+|+ .|++|+.++. ++-++.+.+.++..+ ...+.+...|..+.+...
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~d~~~v~~~~ 68 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG------------ATSVHVLSFDAQDLDTHRELV 68 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc------------CCceEEEEcccCCHHHHHHHH
Confidence 46777887655 444442 3788998886 444554444444322 124667777777765321
Q ss_pred ----ccCCCccEEEEecC
Q 027659 140 ----AVAPPFDYIIGTDV 153 (220)
Q Consensus 140 ----~~~~~fD~V~~~d~ 153 (220)
...++.|+++.+.-
T Consensus 69 ~~~~~~~g~id~lv~nag 86 (246)
T PRK05599 69 KQTQELAGEISLAVVAFG 86 (246)
T ss_pred HHHHHhcCCCCEEEEecC
Confidence 12357898887654
No 488
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=67.14 E-value=15 Score=29.14 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=45.1
Q ss_pred CCCCcEEEeCCcccHHHHHHHH----hCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.+++++|=.|+ +|.+|..+++ .|++|+++.. ++.++.....+... ..++.+...|..+..
T Consensus 4 ~~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 69 (247)
T PRK12935 4 LNGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE-------------GHDVYAVQADVSKVE 69 (247)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 35788999995 5666666553 4888877653 23333322222211 235788888887754
Q ss_pred Cccc-------cCCCccEEEEecC
Q 027659 137 HIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~~-------~~~~fD~V~~~d~ 153 (220)
.... .-+..|+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~ag 93 (247)
T PRK12935 70 DANRLVEEAVNHFGKVDILVNNAG 93 (247)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 3211 1246899987765
No 489
>PRK08278 short chain dehydrogenase; Provisional
Probab=66.77 E-value=19 Score=29.29 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhh-------HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEV-------LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL 130 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~l 130 (220)
.+++++|=.|++.|+ |..++ +.|++|++++. .+. ++.+...+..+ ..++.+...
T Consensus 4 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~ 69 (273)
T PRK08278 4 LSGKTLFITGASRGI-GLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA-------------GGQALPLVG 69 (273)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc-------------CCceEEEEe
Confidence 367889989986554 44433 45889998885 221 22222222211 235777778
Q ss_pred eeCCCCCccc-------cCCCccEEEEecC
Q 027659 131 DWGNEDHIKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 131 dw~~~~~~~~-------~~~~fD~V~~~d~ 153 (220)
|..+.+.... .-+++|+|+.+.-
T Consensus 70 D~~~~~~i~~~~~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 70 DVRDEDQVAAAVAKAVERFGGIDICVNNAS 99 (273)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 8777653211 1247899987654
No 490
>PRK08628 short chain dehydrogenase; Provisional
Probab=66.66 E-value=16 Score=29.16 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=45.3
Q ss_pred CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
.++++++|=.|++.| +|..++ +.|++|++++.+ +.++. ...+... ..++.+...|..+.+
T Consensus 4 ~l~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~~~~ 68 (258)
T PRK08628 4 NLKDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAPDDEF-AEELRAL-------------QPRAEFVQVDLTDDA 68 (258)
T ss_pred CcCCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChhhHHH-HHHHHhc-------------CCceEEEEccCCCHH
Confidence 357888998987544 444444 458888888863 33322 2222221 235777888877654
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
... ...+..|+|+.+.-
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag 92 (258)
T PRK08628 69 QCRDAVEQTVAKFGRIDGLVNNAG 92 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCc
Confidence 321 11246898887754
No 491
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.37 E-value=23 Score=29.61 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=56.0
Q ss_pred CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (220)
Q Consensus 61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~ 136 (220)
....|+.||==||-.|+ ++..+++.|++++.+-. .+-++...+-++.... ..++.+..+|..+.+
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~-----------~~~v~~~~~Dvs~~~ 76 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGS-----------LEKVLVLQLDVSDEE 76 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCC-----------cCccEEEeCccCCHH
Confidence 45688999999997765 45556677998777765 4556666555554443 125889999998876
Q ss_pred Ccc-------ccCCCccEEEEecC
Q 027659 137 HIK-------AVAPPFDYIIGTDV 153 (220)
Q Consensus 137 ~~~-------~~~~~fD~V~~~d~ 153 (220)
+.. ..-+..|+.+.|.-
T Consensus 77 ~~~~~~~~~~~~fg~vDvLVNNAG 100 (282)
T KOG1205|consen 77 SVKKFVEWAIRHFGRVDVLVNNAG 100 (282)
T ss_pred HHHHHHHHHHHhcCCCCEEEecCc
Confidence 533 23467899988764
No 492
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=66.25 E-value=15 Score=31.40 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=29.1
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~ 102 (220)
...|.+||=.|||. |..++.+|+ .|+ +|+++|. ++-++.++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~ 227 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34678899999876 777777775 587 6999987 44445443
No 493
>PLN02740 Alcohol dehydrogenase-like
Probab=66.18 E-value=14 Score=31.79 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=29.2
Q ss_pred CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (220)
Q Consensus 62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~ 102 (220)
...|.+||=+|||. |...+.+|+ .|+ +|+++|. ++-++.++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 34678999999876 777777775 577 5999997 44555543
No 494
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=66.15 E-value=22 Score=30.08 Aligned_cols=43 Identities=33% Similarity=0.339 Sum_probs=30.3
Q ss_pred CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=+|+|+ +-.+..+|..|..|+..|. +++++.++..+..+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~ 49 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKN 49 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHH
Confidence 4677789987 2244444555689999998 56888777766655
No 495
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=66.12 E-value=25 Score=27.03 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=48.9
Q ss_pred CcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC---cc-
Q 027659 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---IK- 139 (220)
Q Consensus 66 ~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~---~~- 139 (220)
..|+.||||.=.-+.-+... +.+++=+|.|++++.=++-+..+.... ..+.++...|..+..- +.
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~---------~~~~~~v~~Dl~~~~~~~~L~~ 150 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARP---------PANYRYVPADLRDDSWIDALPK 150 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHH---------HEESSEEES-TTSHHHHHHHHH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccC---------CcceeEEeccccchhhHHHHHH
Confidence 38999999987777777663 345777888998887777777664311 1234556655554221 11
Q ss_pred --ccCCCccEEEEecC--CCC-CChHHHHHHH
Q 027659 140 --AVAPPFDYIIGTDV--YAE-HLLEPLLQTI 166 (220)
Q Consensus 140 --~~~~~fD~V~~~d~--y~~-~~~~~l~~~l 166 (220)
......-++++-.+ |.. +....+++.+
T Consensus 151 ~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 151 AGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp CTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred hCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 11234456666665 543 3344455443
No 496
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=66.03 E-value=24 Score=32.07 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=31.2
Q ss_pred CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (220)
Q Consensus 66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (220)
++|-=||+|+ | -++..++..|.+|++.|. ++.++.+..++...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~ 53 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAAR 53 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4577789986 4 355566777999999998 66777776666543
No 497
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.91 E-value=33 Score=28.23 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHH
Q 027659 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLL 101 (220)
Q Consensus 67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~ 101 (220)
+|.=+|+|. |.++..+++.|.+|++.|. ++.++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a 39 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA 39 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 355577775 4455555566888999997 4444443
No 498
>PRK09186 flagellin modification protein A; Provisional
Probab=65.83 E-value=20 Score=28.45 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=44.4
Q ss_pred CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (220)
Q Consensus 64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~ 138 (220)
++++||=.|++.| +|..++ +.|++|++++. ++.++.+...+..... ...+.+...|..+....
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-----------SKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-----------CCceeEEEecCCCHHHH
Confidence 5788999998654 444443 45889999986 4444444443322211 12456667777765432
Q ss_pred cc-------cCCCccEEEEec
Q 027659 139 KA-------VAPPFDYIIGTD 152 (220)
Q Consensus 139 ~~-------~~~~fD~V~~~d 152 (220)
.. .-+..|+|+.+.
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 11 124589998765
No 499
>PRK05875 short chain dehydrogenase; Provisional
Probab=65.73 E-value=22 Score=28.77 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=45.1
Q ss_pred CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (220)
Q Consensus 63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~ 137 (220)
.+++++|=.|++.| +|..++ +.|++|++++. ++.++.....+..... ..++.+...|..+...
T Consensus 5 ~~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~ 72 (276)
T PRK05875 5 FQDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG-----------AGAVRYEPADVTDEDQ 72 (276)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC-----------CCceEEEEcCCCCHHH
Confidence 46789999997644 444443 45889999986 3433333322221100 1356777777766543
Q ss_pred ccc-------cCCCccEEEEecC
Q 027659 138 IKA-------VAPPFDYIIGTDV 153 (220)
Q Consensus 138 ~~~-------~~~~fD~V~~~d~ 153 (220)
... ...+.|+|+.+.-
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 211 1236899887653
No 500
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.70 E-value=36 Score=26.02 Aligned_cols=29 Identities=31% Similarity=0.235 Sum_probs=20.6
Q ss_pred cEEEeCCcc-cH-HHHHHHHhCC-eEEEecch
Q 027659 67 RVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (220)
Q Consensus 67 ~vLELGcG~-G~-~~l~la~~g~-~v~~~D~~ 95 (220)
+|+=+|||. |. +...+++.|. +++.+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478899985 44 4556667787 49999863
Done!