Query 027661
Match_columns 220
No_of_seqs 167 out of 295
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 13:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.4 7.9E-14 1.7E-18 122.9 2.9 72 148-219 51-130 (238)
2 PF01209 Ubie_methyltran: ubiE 99.2 4.4E-12 9.5E-17 110.0 1.1 72 147-218 46-126 (233)
3 PRK05785 hypothetical protein; 99.0 5.4E-10 1.2E-14 95.6 5.9 84 126-218 33-120 (226)
4 KOG1540 Ubiquinone biosynthesi 98.6 8.4E-08 1.8E-12 87.6 6.9 99 118-218 57-187 (296)
5 PLN02233 ubiquinone biosynthes 98.6 4E-08 8.6E-13 85.7 3.6 71 148-218 73-155 (261)
6 PF08241 Methyltransf_11: Meth 98.5 2.4E-08 5.3E-13 69.9 1.3 66 153-219 1-71 (95)
7 TIGR02752 MenG_heptapren 2-hep 98.5 4.8E-08 1E-12 81.3 2.7 71 148-218 45-124 (231)
8 PF07021 MetW: Methionine bios 98.4 1.4E-07 3.1E-12 81.9 3.3 75 137-219 6-86 (193)
9 TIGR03587 Pse_Me-ase pseudamin 98.4 3.5E-07 7.7E-12 77.6 5.3 87 128-217 24-114 (204)
10 PRK10258 biotin biosynthesis p 98.3 9.3E-07 2E-11 75.0 6.1 77 136-219 32-114 (251)
11 PLN02244 tocopherol O-methyltr 98.3 8.3E-07 1.8E-11 80.3 5.7 70 148-218 118-196 (340)
12 PRK11088 rrmA 23S rRNA methylt 98.3 1.1E-06 2.3E-11 76.4 6.1 83 129-217 69-160 (272)
13 PLN02490 MPBQ/MSBQ methyltrans 98.3 1.8E-07 3.9E-12 86.3 0.3 71 148-218 113-188 (340)
14 PF13489 Methyltransf_23: Meth 98.2 5E-07 1.1E-11 69.3 2.1 64 148-218 22-88 (161)
15 COG2230 Cfa Cyclopropane fatty 98.2 1.2E-06 2.7E-11 79.7 4.4 95 114-214 43-143 (283)
16 PLN02396 hexaprenyldihydroxybe 98.2 2.2E-07 4.7E-12 84.8 -0.6 115 101-217 77-207 (322)
17 PRK14103 trans-aconitate 2-met 98.1 2.8E-06 6.1E-11 72.7 4.9 67 148-218 29-99 (255)
18 PRK06202 hypothetical protein; 98.1 4.5E-06 9.8E-11 70.4 5.9 71 148-218 60-139 (232)
19 PF13847 Methyltransf_31: Meth 98.1 8.7E-07 1.9E-11 69.9 1.1 65 148-216 3-81 (152)
20 PF12847 Methyltransf_18: Meth 98.1 9.6E-07 2.1E-11 64.9 1.0 69 148-216 1-78 (112)
21 TIGR02072 BioC biotin biosynth 98.1 3.9E-06 8.6E-11 68.4 4.6 84 129-218 18-108 (240)
22 PF13649 Methyltransf_25: Meth 98.1 9E-07 1.9E-11 65.4 0.4 62 152-217 1-76 (101)
23 PRK08317 hypothetical protein; 98.1 7.6E-06 1.7E-10 66.3 5.5 72 147-218 18-97 (241)
24 PRK11873 arsM arsenite S-adeno 98.0 2.2E-06 4.7E-11 73.8 2.1 70 148-217 77-155 (272)
25 PRK01683 trans-aconitate 2-met 98.0 7.7E-06 1.7E-10 69.5 5.2 68 148-219 31-104 (258)
26 PTZ00098 phosphoethanolamine N 98.0 8.5E-06 1.8E-10 71.2 5.2 87 126-216 33-125 (263)
27 TIGR02081 metW methionine bios 98.0 5.6E-06 1.2E-10 68.2 3.8 66 149-218 14-85 (194)
28 PTZ00146 fibrillarin; Provisio 97.9 7.3E-06 1.6E-10 74.9 3.6 89 129-217 112-211 (293)
29 PRK15451 tRNA cmo(5)U34 methyl 97.9 8E-06 1.7E-10 70.3 3.6 91 121-218 34-135 (247)
30 PLN02336 phosphoethanolamine N 97.9 1.1E-05 2.3E-10 75.0 4.5 67 148-218 266-342 (475)
31 PRK15068 tRNA mo(5)U34 methylt 97.9 1E-05 2.2E-10 73.3 4.2 68 148-217 122-198 (322)
32 PRK11207 tellurite resistance 97.9 8.3E-06 1.8E-10 68.1 3.0 67 149-218 31-105 (197)
33 PF02353 CMAS: Mycolic acid cy 97.8 7.2E-06 1.6E-10 73.1 1.7 83 128-216 44-135 (273)
34 TIGR00452 methyltransferase, p 97.8 3.5E-05 7.6E-10 70.4 6.1 92 123-217 97-197 (314)
35 PRK13944 protein-L-isoaspartat 97.8 2.5E-05 5.4E-10 65.6 4.5 81 136-218 62-152 (205)
36 TIGR00740 methyltransferase, p 97.8 2.8E-05 6E-10 65.9 4.5 91 121-218 31-132 (239)
37 PRK00121 trmB tRNA (guanine-N( 97.8 8.9E-06 1.9E-10 68.3 1.4 77 138-217 33-120 (202)
38 TIGR02469 CbiT precorrin-6Y C5 97.8 1.3E-05 2.8E-10 59.2 2.1 70 148-217 19-97 (124)
39 PRK00107 gidB 16S rRNA methylt 97.8 1.5E-05 3.3E-10 67.4 2.7 71 140-215 41-119 (187)
40 PRK13942 protein-L-isoaspartat 97.8 2.7E-05 5.9E-10 66.0 4.1 72 148-219 76-156 (212)
41 KOG1269 SAM-dependent methyltr 97.8 1.6E-05 3.4E-10 74.4 2.7 111 104-218 70-188 (364)
42 PRK04266 fibrillarin; Provisio 97.7 3.8E-05 8.2E-10 66.7 4.9 74 140-216 66-149 (226)
43 KOG1541 Predicted protein carb 97.7 0.0001 2.3E-09 66.8 7.7 67 149-219 51-123 (270)
44 TIGR02021 BchM-ChlM magnesium 97.7 2.5E-05 5.4E-10 65.2 3.5 95 116-218 20-129 (219)
45 PLN02336 phosphoethanolamine N 97.7 2.4E-05 5.3E-10 72.6 3.6 68 148-218 37-113 (475)
46 TIGR01177 conserved hypothetic 97.7 2.4E-05 5.1E-10 70.2 3.2 67 148-214 182-254 (329)
47 TIGR01934 MenG_MenH_UbiE ubiqu 97.7 8.3E-05 1.8E-09 60.3 5.8 68 148-218 39-116 (223)
48 PLN02585 magnesium protoporphy 97.7 7.6E-05 1.6E-09 68.1 6.1 69 148-218 144-222 (315)
49 PRK11705 cyclopropane fatty ac 97.7 5E-05 1.1E-09 70.5 4.9 84 126-216 148-236 (383)
50 PRK14967 putative methyltransf 97.6 6.7E-05 1.5E-09 63.4 4.7 67 148-215 36-108 (223)
51 PRK07580 Mg-protoporphyrin IX 97.6 4.3E-05 9.4E-10 63.1 3.0 68 148-217 63-136 (230)
52 PRK14903 16S rRNA methyltransf 97.6 2.1E-05 4.5E-10 74.0 1.1 68 147-214 236-313 (431)
53 TIGR00080 pimt protein-L-isoas 97.5 8.6E-05 1.9E-09 62.4 3.7 70 148-217 77-155 (215)
54 PRK08287 cobalt-precorrin-6Y C 97.5 0.00015 3.2E-09 59.4 4.9 89 122-217 11-106 (187)
55 PRK11036 putative S-adenosyl-L 97.5 6.1E-05 1.3E-09 64.7 2.5 68 148-217 44-121 (255)
56 PRK00216 ubiE ubiquinone/menaq 97.5 9.4E-05 2E-09 60.6 3.4 71 148-218 51-131 (239)
57 PRK06922 hypothetical protein; 97.5 3E-05 6.5E-10 77.9 0.6 65 149-216 419-495 (677)
58 TIGR00563 rsmB ribosomal RNA s 97.5 0.00013 2.7E-09 68.0 4.6 68 147-214 237-315 (426)
59 PRK13943 protein-L-isoaspartat 97.5 8.6E-05 1.9E-09 68.1 3.4 72 148-219 80-160 (322)
60 TIGR00446 nop2p NOL1/NOP2/sun 97.5 4.9E-05 1.1E-09 66.5 1.6 68 147-214 70-146 (264)
61 KOG1270 Methyltransferases [Co 97.5 8.1E-05 1.7E-09 68.2 3.0 65 149-215 90-165 (282)
62 PRK14904 16S rRNA methyltransf 97.5 7.4E-05 1.6E-09 70.0 2.8 67 147-214 249-324 (445)
63 PF08242 Methyltransf_12: Meth 97.5 1.1E-05 2.3E-10 59.0 -2.2 67 153-219 1-77 (99)
64 smart00138 MeTrc Methyltransfe 97.5 0.00017 3.7E-09 63.5 4.9 37 148-184 99-147 (264)
65 PRK14901 16S rRNA methyltransf 97.5 8E-05 1.7E-09 69.6 3.0 69 147-215 251-332 (434)
66 PRK11188 rrmJ 23S rRNA methylt 97.4 5.8E-05 1.3E-09 64.2 1.6 67 148-217 51-126 (209)
67 smart00828 PKS_MT Methyltransf 97.4 7.5E-05 1.6E-09 62.0 2.0 62 151-216 2-75 (224)
68 TIGR00438 rrmJ cell division p 97.4 9.5E-05 2.1E-09 60.7 2.6 65 148-215 32-105 (188)
69 TIGR03534 RF_mod_PrmC protein- 97.3 0.00024 5.1E-09 59.3 4.3 67 149-215 88-161 (251)
70 COG2227 UbiG 2-polyprenyl-3-me 97.3 0.00014 2.9E-09 65.6 3.0 66 148-215 59-131 (243)
71 PRK00517 prmA ribosomal protei 97.3 0.00029 6.4E-09 60.9 5.0 66 148-216 119-187 (250)
72 TIGR00138 gidB 16S rRNA methyl 97.3 9.6E-05 2.1E-09 61.7 1.8 63 149-215 43-116 (181)
73 PRK13168 rumA 23S rRNA m(5)U19 97.3 0.00023 4.9E-09 66.7 4.1 80 131-214 282-373 (443)
74 PRK10901 16S rRNA methyltransf 97.3 0.00027 5.9E-09 66.0 4.3 68 147-214 243-319 (427)
75 PRK15001 SAM-dependent 23S rib 97.3 0.00024 5.3E-09 66.6 3.9 92 113-215 198-305 (378)
76 TIGR00091 tRNA (guanine-N(7)-) 97.3 7.9E-05 1.7E-09 62.0 0.4 69 149-217 17-96 (194)
77 PRK09328 N5-glutamine S-adenos 97.2 0.00043 9.3E-09 59.0 4.7 68 148-215 108-182 (275)
78 PRK14968 putative methyltransf 97.2 0.00027 5.8E-09 56.2 3.2 66 148-215 23-97 (188)
79 TIGR00477 tehB tellurite resis 97.2 0.00025 5.5E-09 59.1 3.0 63 149-217 31-103 (195)
80 PRK00312 pcm protein-L-isoaspa 97.2 0.00037 8E-09 58.1 3.9 70 147-218 77-154 (212)
81 TIGR00406 prmA ribosomal prote 97.2 0.00027 5.9E-09 62.6 2.9 67 148-216 159-233 (288)
82 PF03291 Pox_MCEL: mRNA cappin 97.1 0.00071 1.5E-08 62.3 5.6 67 148-219 62-156 (331)
83 TIGR03533 L3_gln_methyl protei 97.1 0.00029 6.2E-09 62.7 2.7 67 149-215 122-196 (284)
84 PRK14902 16S rRNA methyltransf 97.1 0.00035 7.5E-09 65.3 3.0 67 148-215 250-327 (444)
85 PRK09489 rsmC 16S ribosomal RN 97.1 0.00052 1.1E-08 63.1 4.0 95 113-215 166-268 (342)
86 PRK12335 tellurite resistance 97.1 0.00019 4E-09 63.3 0.9 63 149-217 121-193 (287)
87 PRK11805 N5-glutamine S-adenos 97.1 0.0006 1.3E-08 61.6 4.1 66 150-215 135-208 (307)
88 PRK00377 cbiT cobalt-precorrin 97.0 0.00058 1.3E-08 56.7 3.5 70 148-217 40-120 (198)
89 TIGR00537 hemK_rel_arch HemK-r 97.0 0.00059 1.3E-08 55.5 3.2 63 149-215 20-89 (179)
90 PF05175 MTS: Methyltransferas 96.9 0.0011 2.5E-08 54.0 4.4 67 149-215 32-105 (170)
91 PF13659 Methyltransf_26: Meth 96.9 0.00012 2.6E-09 54.3 -1.5 66 149-215 1-77 (117)
92 smart00650 rADc Ribosomal RNA 96.9 0.00099 2.2E-08 53.9 3.4 66 148-215 13-84 (169)
93 TIGR03438 probable methyltrans 96.8 0.00095 2.1E-08 59.5 3.5 62 124-189 43-109 (301)
94 TIGR00536 hemK_fam HemK family 96.8 0.0014 3.1E-08 57.7 4.0 67 149-215 115-189 (284)
95 TIGR00479 rumA 23S rRNA (uraci 96.8 0.0014 2.9E-08 60.9 4.0 83 128-214 274-368 (431)
96 PRK03522 rumB 23S rRNA methylu 96.7 0.0015 3.3E-08 58.5 3.7 83 126-214 153-246 (315)
97 TIGR00478 tly hemolysin TlyA f 96.6 0.0056 1.2E-07 53.8 6.7 69 148-217 75-152 (228)
98 PRK05134 bifunctional 3-demeth 96.6 0.00079 1.7E-08 56.3 1.3 68 148-217 48-123 (233)
99 PRK01544 bifunctional N5-gluta 96.6 0.0014 3.1E-08 63.1 2.8 66 149-214 139-212 (506)
100 PHA03411 putative methyltransf 96.6 0.0018 3.9E-08 59.3 3.2 62 149-214 65-132 (279)
101 COG1041 Predicted DNA modifica 96.5 0.002 4.2E-08 60.7 3.3 103 101-214 161-270 (347)
102 PRK00274 ksgA 16S ribosomal RN 96.5 0.0033 7.1E-08 55.4 4.2 81 126-214 26-111 (272)
103 TIGR01983 UbiG ubiquinone bios 96.4 0.0026 5.7E-08 52.5 3.0 67 149-217 46-121 (224)
104 TIGR03704 PrmC_rel_meth putati 96.3 0.0022 4.9E-08 56.1 2.4 65 149-215 87-160 (251)
105 KOG3010 Methyltransferase [Gen 96.3 0.0032 6.8E-08 57.4 3.2 81 135-218 21-110 (261)
106 PRK14966 unknown domain/N5-glu 96.3 0.0045 9.8E-08 59.5 4.1 65 149-215 252-326 (423)
107 KOG4300 Predicted methyltransf 96.2 0.0096 2.1E-07 53.9 5.8 66 150-218 78-155 (252)
108 PF01170 UPF0020: Putative RNA 96.2 0.0018 4E-08 54.0 1.1 84 126-215 12-113 (179)
109 PRK07402 precorrin-6B methylas 96.2 0.0047 1E-07 51.0 3.2 43 148-190 40-86 (196)
110 COG2813 RsmC 16S RNA G1207 met 96.1 0.0068 1.5E-07 56.1 4.2 96 112-215 127-231 (300)
111 COG4123 Predicted O-methyltran 96.1 0.0065 1.4E-07 54.7 4.0 65 149-215 45-122 (248)
112 PHA03412 putative methyltransf 96.1 0.0086 1.9E-07 53.9 4.6 62 149-215 50-121 (241)
113 PRK14896 ksgA 16S ribosomal RN 95.9 0.01 2.2E-07 51.8 4.1 80 126-215 13-98 (258)
114 PRK14121 tRNA (guanine-N(7)-)- 95.8 0.0048 1E-07 58.7 2.1 70 149-218 123-202 (390)
115 PRK00050 16S rRNA m(4)C1402 me 95.8 0.005 1.1E-07 56.3 2.2 71 148-218 19-100 (296)
116 PF08003 Methyltransf_9: Prote 95.8 0.0084 1.8E-07 56.0 3.4 67 148-215 115-189 (315)
117 KOG3420 Predicted RNA methylas 95.7 0.0096 2.1E-07 51.6 3.2 84 124-214 30-120 (185)
118 PRK11727 23S rRNA mA1618 methy 95.6 0.022 4.8E-07 52.6 5.6 84 130-215 94-196 (321)
119 PRK11760 putative 23S rRNA C24 95.6 0.025 5.4E-07 53.7 5.9 97 116-218 172-280 (357)
120 COG0500 SmtA SAM-dependent met 95.6 0.019 4.1E-07 38.3 3.6 65 152-217 52-127 (257)
121 PF01135 PCMT: Protein-L-isoas 95.5 0.0062 1.3E-07 52.7 1.4 83 129-219 59-152 (209)
122 PTZ00338 dimethyladenosine tra 95.2 0.014 3.1E-07 52.8 2.8 68 114-189 6-79 (294)
123 COG2890 HemK Methylase of poly 95.2 0.011 2.4E-07 53.0 2.0 63 151-214 113-182 (280)
124 TIGR02716 C20_methyl_CrtF C-20 95.0 0.024 5.2E-07 50.0 3.4 63 148-216 149-223 (306)
125 cd02440 AdoMet_MTases S-adenos 94.9 0.037 8E-07 37.3 3.6 65 151-218 1-76 (107)
126 PLN03075 nicotianamine synthas 94.8 0.041 8.9E-07 50.6 4.8 68 149-217 124-204 (296)
127 PRK11933 yebU rRNA (cytosine-C 94.8 0.016 3.4E-07 56.1 2.1 68 147-214 112-189 (470)
128 TIGR03840 TMPT_Se_Te thiopurin 94.6 0.057 1.2E-06 46.5 4.8 34 149-184 35-71 (213)
129 PF03848 TehB: Tellurite resis 94.5 0.019 4.2E-07 49.7 1.7 62 149-216 31-102 (192)
130 PF05148 Methyltransf_8: Hypot 94.4 0.065 1.4E-06 48.0 4.8 57 149-218 73-132 (219)
131 PRK10909 rsmD 16S rRNA m(2)G96 94.3 0.036 7.9E-07 47.6 3.0 80 128-214 38-127 (199)
132 TIGR02085 meth_trns_rumB 23S r 94.0 0.054 1.2E-06 50.1 3.6 64 116-183 203-269 (374)
133 PRK15128 23S rRNA m(5)C1962 me 93.7 0.035 7.5E-07 52.4 1.8 66 149-215 221-300 (396)
134 COG2264 PrmA Ribosomal protein 93.6 0.067 1.5E-06 49.5 3.5 66 148-215 162-236 (300)
135 PRK13255 thiopurine S-methyltr 93.3 0.14 3E-06 44.3 4.7 33 149-183 38-73 (218)
136 PF03141 Methyltransf_29: Puta 93.1 0.066 1.4E-06 52.9 2.8 94 117-215 85-188 (506)
137 PF01728 FtsJ: FtsJ-like methy 93.0 0.041 8.9E-07 44.7 1.0 32 149-180 24-59 (181)
138 PRK04148 hypothetical protein; 93.0 0.052 1.1E-06 44.9 1.6 62 134-197 4-68 (134)
139 COG0144 Sun tRNA and rRNA cyto 92.9 0.1 2.2E-06 48.3 3.6 73 140-214 150-235 (355)
140 PF07091 FmrO: Ribosomal RNA m 92.9 0.17 3.8E-06 46.0 4.9 51 134-189 92-150 (251)
141 TIGR00755 ksgA dimethyladenosi 92.6 0.14 3.1E-06 44.3 3.9 55 126-188 13-71 (253)
142 PLN02672 methionine S-methyltr 92.4 0.071 1.5E-06 56.7 2.0 35 149-183 119-156 (1082)
143 KOG2940 Predicted methyltransf 92.4 0.06 1.3E-06 49.9 1.3 64 151-218 75-147 (325)
144 PRK11783 rlmL 23S rRNA m(2)G24 92.1 0.093 2E-06 52.6 2.3 63 149-214 539-614 (702)
145 PF06325 PrmA: Ribosomal prote 92.0 0.086 1.9E-06 48.2 1.8 67 148-215 161-232 (295)
146 PF13679 Methyltransf_32: Meth 92.0 0.18 4E-06 40.1 3.5 38 147-184 24-68 (141)
147 PRK00811 spermidine synthase; 91.8 0.23 5E-06 44.3 4.3 67 149-215 77-157 (283)
148 PF09243 Rsm22: Mitochondrial 90.3 0.77 1.7E-05 41.0 6.1 65 149-218 34-112 (274)
149 PLN02781 Probable caffeoyl-CoA 90.0 0.43 9.3E-06 41.5 4.2 79 132-215 57-151 (234)
150 KOG3045 Predicted RNA methylas 89.9 0.49 1.1E-05 44.4 4.6 58 149-218 181-238 (325)
151 PRK04457 spermidine synthase; 89.8 0.19 4E-06 44.5 1.8 36 149-184 67-105 (262)
152 PF05401 NodS: Nodulation prot 89.8 0.15 3.2E-06 45.1 1.1 61 149-215 44-113 (201)
153 COG2242 CobL Precorrin-6B meth 89.3 0.35 7.7E-06 42.3 3.1 70 147-217 33-111 (187)
154 PF02475 Met_10: Met-10+ like- 89.3 0.098 2.1E-06 45.3 -0.4 67 148-215 101-176 (200)
155 PRK04338 N(2),N(2)-dimethylgua 89.1 0.4 8.6E-06 45.1 3.5 63 149-214 58-131 (382)
156 COG0293 FtsJ 23S rRNA methylas 89.1 0.29 6.4E-06 43.2 2.5 38 148-185 45-86 (205)
157 KOG1975 mRNA cap methyltransfe 88.8 0.46 1E-05 45.6 3.7 71 148-218 117-206 (389)
158 PRK13256 thiopurine S-methyltr 87.9 0.71 1.5E-05 40.9 4.1 50 130-184 28-80 (226)
159 TIGR02143 trmA_only tRNA (urac 87.8 0.93 2E-05 41.9 5.0 63 116-183 168-233 (353)
160 COG4976 Predicted methyltransf 87.7 0.17 3.8E-06 46.6 0.2 61 150-213 127-193 (287)
161 PRK03612 spermidine synthase; 87.0 0.85 1.9E-05 44.3 4.5 67 149-216 298-381 (521)
162 TIGR00006 S-adenosyl-methyltra 86.7 0.65 1.4E-05 43.0 3.3 71 148-218 20-102 (305)
163 TIGR00095 RNA methyltransferas 86.7 1.2 2.5E-05 37.6 4.6 51 127-183 33-86 (189)
164 COG2263 Predicted RNA methylas 86.3 1.2 2.5E-05 39.6 4.5 53 128-184 29-83 (198)
165 COG2519 GCD14 tRNA(1-methylade 86.2 0.49 1.1E-05 43.3 2.2 87 119-214 74-169 (256)
166 PRK11783 rlmL 23S rRNA m(2)G24 85.8 1.1 2.5E-05 45.0 4.7 103 108-215 152-310 (702)
167 COG2518 Pcm Protein-L-isoaspar 85.7 0.49 1.1E-05 41.9 1.9 71 147-219 71-149 (209)
168 PRK05031 tRNA (uracil-5-)-meth 85.4 1.5 3.3E-05 40.5 5.0 56 123-183 184-242 (362)
169 KOG2361 Predicted methyltransf 85.3 2.6 5.6E-05 38.9 6.4 87 131-217 54-153 (264)
170 TIGR00417 speE spermidine synt 84.7 0.96 2.1E-05 39.8 3.2 36 149-184 73-111 (270)
171 PF02390 Methyltransf_4: Putat 84.7 0.34 7.5E-06 41.2 0.5 67 150-216 19-96 (195)
172 COG2265 TrmA SAM-dependent met 84.7 2.8 6.1E-05 40.4 6.6 98 113-214 260-368 (432)
173 PF02384 N6_Mtase: N-6 DNA Met 84.4 0.52 1.1E-05 41.5 1.5 37 147-183 45-91 (311)
174 COG4106 Tam Trans-aconitate me 82.9 0.65 1.4E-05 42.5 1.5 42 148-189 30-75 (257)
175 KOG1122 tRNA and rRNA cytosine 82.2 0.7 1.5E-05 45.4 1.5 66 147-213 240-317 (460)
176 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.9 0.67 1.4E-05 41.6 1.2 68 147-214 84-162 (283)
177 PLN02232 ubiquinone biosynthes 81.9 0.78 1.7E-05 37.3 1.4 18 201-218 37-54 (160)
178 PF05958 tRNA_U5-meth_tr: tRNA 81.7 3.1 6.7E-05 38.4 5.5 63 116-183 167-232 (352)
179 PF03602 Cons_hypoth95: Conser 80.9 0.75 1.6E-05 38.9 1.0 81 127-214 25-120 (183)
180 PRK01581 speE spermidine synth 80.2 1.6 3.5E-05 41.8 3.1 68 149-216 151-234 (374)
181 PLN02366 spermidine synthase 78.7 2 4.4E-05 39.4 3.2 40 149-188 92-135 (308)
182 PRK01544 bifunctional N5-gluta 77.8 2.8 6.1E-05 40.7 4.1 91 126-217 321-426 (506)
183 PF06080 DUF938: Protein of un 77.3 2.6 5.6E-05 37.3 3.3 27 133-162 13-39 (204)
184 PLN02476 O-methyltransferase 77.2 2 4.4E-05 39.2 2.8 67 149-215 119-201 (278)
185 PF05724 TPMT: Thiopurine S-me 76.9 2 4.4E-05 37.3 2.6 47 133-184 25-74 (218)
186 KOG2198 tRNA cytosine-5-methyl 75.8 3.8 8.2E-05 39.5 4.2 84 133-216 133-244 (375)
187 PF05219 DREV: DREV methyltran 75.3 4.4 9.6E-05 37.4 4.4 64 149-220 95-163 (265)
188 KOG1331 Predicted methyltransf 74.4 3.5 7.5E-05 38.6 3.5 64 149-216 46-111 (293)
189 KOG2904 Predicted methyltransf 74.3 3.1 6.7E-05 39.4 3.2 66 149-214 149-228 (328)
190 KOG2187 tRNA uracil-5-methyltr 73.7 5.5 0.00012 40.0 4.9 74 126-201 363-446 (534)
191 KOG2899 Predicted methyltransf 73.7 2.8 6E-05 39.1 2.7 41 149-189 59-103 (288)
192 PF09445 Methyltransf_15: RNA 73.7 1.1 2.3E-05 38.2 -0.0 62 151-215 2-76 (163)
193 KOG1271 Methyltransferases [Ge 72.4 3.9 8.5E-05 36.9 3.2 57 127-183 44-105 (227)
194 KOG1499 Protein arginine N-met 68.1 2.3 5.1E-05 40.5 1.0 102 111-214 21-133 (346)
195 TIGR03439 methyl_EasF probable 68.1 8.8 0.00019 35.7 4.7 62 124-189 56-125 (319)
196 PF08704 GCD14: tRNA methyltra 67.4 1.7 3.7E-05 39.0 -0.1 67 148-214 40-119 (247)
197 COG2521 Predicted archaeal met 66.4 3.8 8.2E-05 38.1 1.9 67 148-214 134-211 (287)
198 PF05971 Methyltransf_10: Prot 63.5 9.2 0.0002 35.6 3.9 63 149-215 103-184 (299)
199 PF01269 Fibrillarin: Fibrilla 60.8 4.5 9.7E-05 36.6 1.3 89 129-217 53-152 (229)
200 COG4122 Predicted O-methyltran 59.5 11 0.00023 33.6 3.4 64 149-215 60-139 (219)
201 TIGR01444 fkbM_fam methyltrans 59.0 7.2 0.00016 29.9 2.0 33 151-183 1-36 (143)
202 COG1092 Predicted SAM-dependen 58.3 4.7 0.0001 38.7 1.1 65 149-214 218-296 (393)
203 PRK13699 putative methylase; P 56.6 4.2 9.2E-05 35.4 0.4 64 124-191 143-208 (227)
204 PF01234 NNMT_PNMT_TEMT: NNMT/ 55.6 8.9 0.00019 34.8 2.3 56 128-183 36-93 (256)
205 TIGR02987 met_A_Alw26 type II 52.6 12 0.00025 36.1 2.7 41 149-189 32-84 (524)
206 TIGR00308 TRM1 tRNA(guanine-26 52.1 8.6 0.00019 36.4 1.7 66 113-183 14-83 (374)
207 PF11968 DUF3321: Putative met 51.8 27 0.00059 31.4 4.7 60 150-217 53-113 (219)
208 PF11899 DUF3419: Protein of u 51.7 17 0.00036 34.7 3.6 35 147-183 34-71 (380)
209 COG0220 Predicted S-adenosylme 51.3 11 0.00024 33.3 2.2 67 151-217 51-128 (227)
210 COG1889 NOP1 Fibrillarin-like 49.6 14 0.0003 33.7 2.5 37 147-183 75-114 (231)
211 COG3129 Predicted SAM-dependen 46.2 58 0.0013 30.6 6.0 85 131-215 61-160 (292)
212 PF10294 Methyltransf_16: Puta 45.5 15 0.00032 30.4 2.0 67 148-215 45-126 (173)
213 KOG3191 Predicted N6-DNA-methy 45.4 42 0.00092 30.2 4.8 35 150-184 45-83 (209)
214 COG1189 Predicted rRNA methyla 44.9 16 0.00035 33.5 2.2 41 148-190 79-127 (245)
215 PF01555 N6_N4_Mtase: DNA meth 42.7 13 0.00029 29.8 1.3 54 125-183 172-227 (231)
216 KOG2671 Putative RNA methylase 41.7 20 0.00044 35.0 2.5 66 147-214 207-290 (421)
217 PF10672 Methyltrans_SAM: S-ad 40.2 5.8 0.00013 36.4 -1.3 41 149-190 124-170 (286)
218 PRK11524 putative methyltransf 40.0 23 0.00049 31.5 2.4 64 122-190 186-252 (284)
219 KOG1098 Putative SAM-dependent 39.9 17 0.00036 37.9 1.7 41 134-179 35-79 (780)
220 COG2520 Predicted methyltransf 39.1 22 0.00047 33.8 2.2 68 148-215 188-263 (341)
221 PRK10611 chemotaxis methyltran 38.9 86 0.0019 28.8 6.0 35 150-184 117-162 (287)
222 KOG4589 Cell division protein 37.1 21 0.00045 32.5 1.7 31 148-178 69-103 (232)
223 PF01596 Methyltransf_3: O-met 37.1 66 0.0014 27.9 4.7 76 132-215 34-128 (205)
224 PF00891 Methyltransf_2: O-met 36.1 23 0.00049 30.0 1.7 61 149-216 101-166 (241)
225 KOG2352 Predicted spermine/spe 34.3 32 0.0007 34.3 2.6 63 151-214 51-120 (482)
226 cd00739 DHPS DHPS subgroup of 32.8 72 0.0016 28.5 4.4 37 109-157 8-45 (257)
227 PF10237 N6-adenineMlase: Prob 32.1 2.4E+02 0.0053 23.9 7.2 81 127-214 8-92 (162)
228 TIGR01496 DHPS dihydropteroate 31.1 71 0.0015 28.5 4.1 36 110-156 8-43 (257)
229 KOG1661 Protein-L-isoaspartate 31.0 78 0.0017 29.1 4.3 102 108-219 47-173 (237)
230 PHA00649 hypothetical protein 28.2 29 0.00063 26.9 1.0 17 52-68 65-81 (83)
231 PF01795 Methyltransf_5: MraW 28.1 33 0.00072 32.1 1.5 72 147-218 19-103 (310)
232 cd00315 Cyt_C5_DNA_methylase C 27.9 54 0.0012 29.1 2.7 64 151-216 2-70 (275)
233 PF08123 DOT1: Histone methyla 27.6 53 0.0012 28.5 2.6 33 147-182 41-79 (205)
234 KOG2539 Mitochondrial/chloropl 27.3 79 0.0017 31.8 4.0 100 115-218 171-284 (491)
235 COG0116 Predicted N6-adenine-s 26.7 1.1E+02 0.0023 29.8 4.7 46 107-158 153-201 (381)
236 KOG2915 tRNA(1-methyladenosine 25.7 48 0.001 31.5 2.1 33 147-179 104-140 (314)
237 PF12147 Methyltransf_20: Puta 25.3 1.1E+02 0.0024 29.2 4.3 33 150-184 137-176 (311)
238 KOG3354 Gluconate kinase [Carb 24.9 66 0.0014 28.6 2.7 76 130-217 90-171 (191)
239 COG0742 N6-adenine-specific me 24.6 69 0.0015 28.1 2.7 49 128-183 27-80 (187)
240 TIGR02886 spore_II_AA anti-sig 24.5 66 0.0014 23.6 2.3 23 122-144 48-70 (106)
241 COG1064 AdhP Zn-dependent alco 23.9 36 0.00079 32.3 0.9 69 147-217 165-238 (339)
242 cd06844 STAS Sulphate Transpor 23.2 79 0.0017 23.2 2.5 23 122-144 48-70 (100)
243 KOG1596 Fibrillarin and relate 21.9 66 0.0014 30.4 2.2 52 128-179 135-191 (317)
244 PRK11613 folP dihydropteroate 21.6 1.5E+02 0.0032 27.3 4.4 42 104-157 17-59 (282)
245 PF01740 STAS: STAS domain; I 21.5 71 0.0015 23.8 2.0 22 123-144 58-79 (117)
246 PRK13753 dihydropteroate synth 20.6 1.4E+02 0.0031 27.5 4.1 39 110-159 10-48 (279)
247 smart00463 SMR Small MutS-rela 20.2 1E+02 0.0023 22.0 2.5 32 128-163 12-44 (80)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=7.9e-14 Score=122.91 Aligned_cols=72 Identities=28% Similarity=0.446 Sum_probs=60.4
Q ss_pred CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCC----CCCCCCCCCcceEEEeeeec
Q 027661 148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLN----PKLPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~----p~LPFeDnSFDaVtcsvSVd 219 (220)
||.+|||+||| +..++.+.++.++|+|+|+|++||+ +.+++.+.-.++++.. .+|||+|||||+|+|++|++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 59999999999 7888888888899999999999999 4888876544433322 58999999999999999874
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.19 E-value=4.4e-12 Score=109.95 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=44.4
Q ss_pred CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHh-hCcCcchhhhccCCC---C-CCCCCCCCCcceEEEeee
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVVQDLNL---N-PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~VqDLN~---~-p~LPFeDnSFDaVtcsvS 217 (220)
.+|.+||||||| +...+.+.+++ ++|+|+|+|++||+ ++.++.+...+++.. + .+|||+|+|||+|+|+++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 358999999999 44556665554 79999999999999 477766543333222 2 589999999999999998
Q ss_pred e
Q 027661 218 T 218 (220)
Q Consensus 218 V 218 (220)
+
T Consensus 126 l 126 (233)
T PF01209_consen 126 L 126 (233)
T ss_dssp G
T ss_pred H
Confidence 6
No 3
>PRK05785 hypothetical protein; Provisional
Probab=99.00 E-value=5.4e-10 Score=95.63 Aligned_cols=84 Identities=26% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCC
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPK 201 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~ 201 (220)
.|...+..+.+.....+++ +.+|||||||.+. ++.+.. ..+|+|+|+|++||+. +.+ .++.+.|. .+
T Consensus 33 ~~~~wr~~~~~~l~~~~~~----~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-~~~~~~d~---~~ 103 (226)
T PRK05785 33 QDVRWRAELVKTILKYCGR----PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-DDKVVGSF---EA 103 (226)
T ss_pred CcHHHHHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-cceEEech---hh
Confidence 3455556666666665553 6799999999553 354433 3699999999999995 333 22222222 36
Q ss_pred CCCCCCCcceEEEeeee
Q 027661 202 LPFEDNSFDVITNVCKT 218 (220)
Q Consensus 202 LPFeDnSFDaVtcsvSV 218 (220)
|||+|+|||+|+|++++
T Consensus 104 lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 104 LPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCCCCCEEEEEecChh
Confidence 89999999999999876
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.61 E-value=8.4e-08 Score=87.62 Aligned_cols=99 Identities=19% Similarity=0.359 Sum_probs=64.4
Q ss_pred CCCCccCCCCHHHHHHHH---------------HHHHhhCCCCCCCCCeEeeeccc-------hhhccCCC--CCCCcEE
Q 027661 118 ETPRFVTHIDDPAIAALT---------------KYYSEVFPPSNTPGVSILDLCSS-------WVSHFPPG--YKQDRIV 173 (220)
Q Consensus 118 ~~PRfVtHIDd~ai~~LT---------------~lY~~~lp~~~~pG~~VLDLccS-------WvSHLP~~--v~~~~VV 173 (220)
+++|+|.|+=+.....+- ++|-..+-+ .+|++|||+||| ...|.+.. ...++|+
T Consensus 57 eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p--~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~ 134 (296)
T KOG1540|consen 57 EKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGP--GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVT 134 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCC--CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEE
Confidence 477888877555444332 222223333 458999999999 34455442 2348999
Q ss_pred EecCCHHHHhh-CcCcchhhh-cc-----CCCC-CCCCCCCCCcceEEEeeee
Q 027661 174 GMGMNEEELKR-NPVLTEYVV-QD-----LNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 174 GLGmN~eELaa-N~rL~~~~V-qD-----LN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
++|+|++||+. ..|-.+... .+ +..+ -+|||+|++||+.|+++||
T Consensus 135 v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGI 187 (296)
T KOG1540|consen 135 VLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGI 187 (296)
T ss_pred EEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecce
Confidence 99999999994 333322111 11 1112 3799999999999999998
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=4e-08 Score=85.69 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=48.7
Q ss_pred CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhh-CcCcch---hh---hccCCCC-CCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKR-NPVLTE---YV---VQDLNLN-PKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaa-N~rL~~---~~---VqDLN~~-p~LPFeDnSFDaVtcs 215 (220)
+|.+|||+|||.+.. +.+.+++ ++|+|+|+|++||+. +.+... .. ++-++.+ .+|||+|++||+|+|+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 488999999996653 4333333 699999999999993 433321 00 1111222 4789999999999998
Q ss_pred eee
Q 027661 216 CKT 218 (220)
Q Consensus 216 vSV 218 (220)
+++
T Consensus 153 ~~l 155 (261)
T PLN02233 153 YGL 155 (261)
T ss_pred ccc
Confidence 764
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.55 E-value=2.4e-08 Score=69.93 Aligned_cols=66 Identities=27% Similarity=0.325 Sum_probs=41.7
Q ss_pred eeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCC-CCCCCCCCCCcceEEEeeeec
Q 027661 153 LDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNL-NPKLPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 153 LDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~-~p~LPFeDnSFDaVtcsvSVd 219 (220)
|||+||-+. .+.+. +..+|+|+|+|+++++. ++++....+.-.+. ..++||+|+|||+|+|..+++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccccee
Confidence 899999332 24443 56799999999999995 44444332221111 357899999999999987653
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.52 E-value=4.8e-08 Score=81.30 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=48.6
Q ss_pred CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
+|.+|||+|||++. .+.+.+++ ++|+|+|+|+++++. +.++.+....+ +..+ .++||++++||+|+++.++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 58999999999554 34444433 699999999999973 44443321111 1111 3578999999999998765
No 8
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.43 E-value=1.4e-07 Score=81.88 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=54.4
Q ss_pred HHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh--CcCcchhhhccCCCCCCCC-CCCCCcc
Q 027661 137 YYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR--NPVLTEYVVQDLNLNPKLP-FEDNSFD 210 (220)
Q Consensus 137 lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa--N~rL~~~~VqDLN~~p~LP-FeDnSFD 210 (220)
...+.+++ |++||||||| --.||.++ +.-++.|++++++.+.+ ...+. =..+|++. .|+ |+|+|||
T Consensus 6 ~I~~~I~p----gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv~-Viq~Dld~--gL~~f~d~sFD 77 (193)
T PF07021_consen 6 IIAEWIEP----GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGVS-VIQGDLDE--GLADFPDQSFD 77 (193)
T ss_pred HHHHHcCC----CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCCC-EEECCHHH--hHhhCCCCCcc
Confidence 34566764 9999999999 44556553 45689999999999884 44443 22366666 464 9999999
Q ss_pred eEEEeeeec
Q 027661 211 VITNVCKTH 219 (220)
Q Consensus 211 aVtcsvSVd 219 (220)
.||++-++|
T Consensus 78 ~VIlsqtLQ 86 (193)
T PF07021_consen 78 YVILSQTLQ 86 (193)
T ss_pred EEehHhHHH
Confidence 999987654
No 9
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.41 E-value=3.5e-07 Score=77.56 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCC
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLP 203 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LP 203 (220)
+..+.+..+.+.+.+... .++.+|||+|||.+. +|....+..+|+|+|+|+++++. +.++.+--+ .+.+..-|
T Consensus 24 ~~~~~~~~~~~~~~l~~~-~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~--~~~d~~~~ 100 (204)
T TIGR03587 24 QSLVAAKLAMFARALNRL-PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINI--IQGSLFDP 100 (204)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcE--EEeeccCC
Confidence 333444444444443221 136799999999544 34444445799999999999994 544432111 11122128
Q ss_pred CCCCCcceEEEeee
Q 027661 204 FEDNSFDVITNVCK 217 (220)
Q Consensus 204 FeDnSFDaVtcsvS 217 (220)
|++++||+|+|...
T Consensus 101 ~~~~sfD~V~~~~v 114 (204)
T TIGR03587 101 FKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCCEEEEEECCh
Confidence 99999999998654
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.34 E-value=9.3e-07 Score=74.99 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=52.5
Q ss_pred HHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCCCCCCCCCCCc
Q 027661 136 KYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLNPKLPFEDNSF 209 (220)
Q Consensus 136 ~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~p~LPFeDnSF 209 (220)
+.-.+.++. .++.+|||+|||.+. ++.. ...+|+|+|+|+++++. +.+.. .+.+.|++ .+||++++|
T Consensus 32 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~---~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKDAADHYLAGDIE---SLPLATATF 104 (251)
T ss_pred HHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcc---cCcCCCCcE
Confidence 333455654 246799999999654 3443 23699999999999983 33332 23334443 478999999
Q ss_pred ceEEEeeeec
Q 027661 210 DVITNVCKTH 219 (220)
Q Consensus 210 DaVtcsvSVd 219 (220)
|+|++..+++
T Consensus 105 D~V~s~~~l~ 114 (251)
T PRK10258 105 DLAWSNLAVQ 114 (251)
T ss_pred EEEEECchhh
Confidence 9999987653
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=98.32 E-value=8.3e-07 Score=80.31 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
++.+|||||||++. +|.+.. ..+|+|+|+|+++++. +.+..+.. ++-+..+ ..+||+|++||+|+|..+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 58899999999654 455433 3599999999999983 43322211 1111111 3689999999999997654
No 12
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.32 E-value=1.1e-06 Score=76.45 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC---CCcEEEecCCHHHHhh-CcCcch--hhhccCCCC
Q 027661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK---QDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLN 199 (220)
Q Consensus 129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~---~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~ 199 (220)
...+.+.++-.+.++. ++.+|||+|||.+.+ +.+.++ ..+|+|+|+|+++++. .++... +.+.|.
T Consensus 69 ~l~~~i~~~l~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~--- 142 (272)
T PRK11088 69 PLRDAVANLLAERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS--- 142 (272)
T ss_pred HHHHHHHHHHHHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---
Confidence 4556666666777764 357899999996654 322222 2479999999999983 433322 233333
Q ss_pred CCCCCCCCCcceEEEeee
Q 027661 200 PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 200 p~LPFeDnSFDaVtcsvS 217 (220)
.++||+|++||+|++.++
T Consensus 143 ~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 143 HRLPFADQSLDAIIRIYA 160 (272)
T ss_pred ccCCCcCCceeEEEEecC
Confidence 358999999999998653
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.27 E-value=1.8e-07 Score=86.31 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=47.0
Q ss_pred CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
++.+|||||||.+. .+.+.++..+|+|+|+|+++++. +.+....-++-+..+ .++||++++||+|+|..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 57899999999654 23333344689999999999984 333221111111222 3679999999999987654
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.24 E-value=5e-07 Score=69.35 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=44.8
Q ss_pred CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
++.+|||++||.+ .++.+. +. +|+|+|+|+++++. .....+....+..++++++||+|+|..++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 4789999999944 445332 23 99999999999988 11112222223567789999999998654
No 15
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=1.2e-06 Score=79.65 Aligned_cols=95 Identities=19% Similarity=0.394 Sum_probs=63.5
Q ss_pred ccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcc
Q 027661 114 SLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLT 189 (220)
Q Consensus 114 ~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~ 189 (220)
..||..|.. -++++-++++....+.+-= +||++|||++|||++- +.+++ ..+|+|+++|+++++ ++.++.
T Consensus 43 cayf~~~~~--tL~eAQ~~k~~~~~~kl~L---~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~ 116 (283)
T COG2230 43 CAYFEDPDM--TLEEAQRAKLDLILEKLGL---KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA 116 (283)
T ss_pred eEEeCCCCC--ChHHHHHHHHHHHHHhcCC---CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH
Confidence 344444443 5788888888777776643 4799999999999875 44433 369999999999999 477666
Q ss_pred hhhhc-cCCCC-CCCCCCCCCcceEEE
Q 027661 190 EYVVQ-DLNLN-PKLPFEDNSFDVITN 214 (220)
Q Consensus 190 ~~~Vq-DLN~~-p~LPFeDnSFDaVtc 214 (220)
+.-.. ++... ...+.-++.||.|+.
T Consensus 117 ~~gl~~~v~v~l~d~rd~~e~fDrIvS 143 (283)
T COG2230 117 ARGLEDNVEVRLQDYRDFEEPFDRIVS 143 (283)
T ss_pred HcCCCcccEEEeccccccccccceeee
Confidence 53222 11111 244444555999875
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.21 E-value=2.2e-07 Score=84.82 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=67.5
Q ss_pred CccccccCCCCCcccCcCCCCcc--CCCCHHHHHHHHHHHHhhCCCCC-----CCCCeEeeeccchhhc---cCCCCCCC
Q 027661 101 KEEDFQRFDESPDSLFYETPRFV--THIDDPAIAALTKYYSEVFPPSN-----TPGVSILDLCSSWVSH---FPPGYKQD 170 (220)
Q Consensus 101 ~~~~f~R~DesdD~~FY~~PRfV--tHIDd~ai~~LT~lY~~~lp~~~-----~pG~~VLDLccSWvSH---LP~~v~~~ 170 (220)
.++++.++++-.+..++..=.|. .++...-++-+.+.+.+.++.+. .+|.+|||||||.+.. |.. ...
T Consensus 77 ~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~--~g~ 154 (322)
T PLN02396 77 NEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR--MGA 154 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHH--cCC
Confidence 45555566665554444333333 34455555555554444443321 2578999999997765 332 235
Q ss_pred cEEEecCCHHHHhh-CcCcchhhh-ccC---CCC-CCCCCCCCCcceEEEeee
Q 027661 171 RIVGMGMNEEELKR-NPVLTEYVV-QDL---NLN-PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 171 ~VVGLGmN~eELaa-N~rL~~~~V-qDL---N~~-p~LPFeDnSFDaVtcsvS 217 (220)
+|+|+|+++++++. +.+...... .++ ..+ .+||+++++||+|+|...
T Consensus 155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 99999999999984 433211100 011 111 367899999999999754
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.14 E-value=2.8e-06 Score=72.72 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=45.6
Q ss_pred CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
++.+|||||||.+. ++.+.....+|+|+|.|+++++. +++--++...|.. +++ ++++||+|+|...+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~---~~~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVR---DWK-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChh---hCC-CCCCceEEEEehhh
Confidence 57899999999443 44443334699999999999983 3332233334432 343 56899999998764
No 18
>PRK06202 hypothetical protein; Provisional
Probab=98.14 E-value=4.5e-06 Score=70.40 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=45.5
Q ss_pred CCCeEeeeccchhhc---cCC---CCC-CCcEEEecCCHHHHhh-CcCcchhhhccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVSH---FPP---GYK-QDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~---~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
++.+|||||||.+.. |.+ +.+ ..+|+|+|+|+++++. +.+....-+.-...+ -.+|+++++||+|+|+.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 477999999996542 221 112 2489999999999984 444432111100011 2467789999999998765
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.11 E-value=8.7e-07 Score=69.88 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=42.8
Q ss_pred CCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCC--CCCCCcceEE
Q 027661 148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLP--FEDNSFDVIT 213 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LP--FeDnSFDaVt 213 (220)
.+.+|||||||.+.. +.+.+ ...+|+|+|+|+++++. +.++.+. .+.|+.. +| |+ +.||.|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccccC-CCeeEEE
Confidence 478999999994433 33222 24689999999999994 5544332 2233332 44 66 9999999
Q ss_pred Eee
Q 027661 214 NVC 216 (220)
Q Consensus 214 csv 216 (220)
+..
T Consensus 79 ~~~ 81 (152)
T PF13847_consen 79 SNG 81 (152)
T ss_dssp EES
T ss_pred EcC
Confidence 874
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.10 E-value=9.6e-07 Score=64.93 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh----hhccCCCCC-CCCCCCCCcceEEEee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY----VVQDLNLNP-KLPFEDNSFDVITNVC 216 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~----~VqDLN~~p-~LPFeDnSFDaVtcsv 216 (220)
||.+|||||||.+.. +.+.....+|+|+|.|+++++. +.++.+. -++-++.+. ..+-..+.||+|+|..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 588999999996655 3222233699999999999993 5555211 111112222 2233334599999986
No 21
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.10 E-value=3.9e-06 Score=68.35 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcch---hhhccCCCCCC
Q 027661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTE---YVVQDLNLNPK 201 (220)
Q Consensus 129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~---~~VqDLN~~p~ 201 (220)
.....+-+.+....+. .+.+|||||||.+ .++.+.....+|+|+|.|++++.. +.++.. +...|+. .
T Consensus 18 ~~~~~l~~~~~~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~---~ 91 (240)
T TIGR02072 18 EMAKRLLALLKEKGIF---IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAE---K 91 (240)
T ss_pred HHHHHHHHHhhhhccC---CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchh---h
Confidence 3444444444443211 2468999999954 345444444689999999999973 444431 2223333 5
Q ss_pred CCCCCCCcceEEEeeee
Q 027661 202 LPFEDNSFDVITNVCKT 218 (220)
Q Consensus 202 LPFeDnSFDaVtcsvSV 218 (220)
+|+++++||+|+|..+.
T Consensus 92 ~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 92 LPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCCCCceeEEEEhhhh
Confidence 68899999999997653
No 22
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.07 E-value=9e-07 Score=65.40 Aligned_cols=62 Identities=29% Similarity=0.495 Sum_probs=39.4
Q ss_pred Eeeeccchhhc-------cCCCCCCCcEEEecCCHHHHhh-CcCcc------hhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661 152 ILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKR-NPVLT------EYVVQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 152 VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELaa-N~rL~------~~~VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
|||||||-+.+ ++.. ...+++|+|+|+++|+. +.+.. ++.+.|+ .+||+.+++||+|+|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~-~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAG-PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhc-ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCC
Confidence 79999995444 3221 12699999999999994 44443 2334555 348899999999999543
No 23
>PRK08317 hypothetical protein; Provisional
Probab=98.06 E-value=7.6e-06 Score=66.33 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=46.5
Q ss_pred CCCCeEeeeccchhh---ccCCCC-CCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 147 TPGVSILDLCSSWVS---HFPPGY-KQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 147 ~pG~~VLDLccSWvS---HLP~~v-~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
.++.+|||+|||.+. ++.+.+ ..++|+|+|.|++++.. +.+.. ...+.-.+.+ ..+|+++++||.|++...+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 358899999999444 444444 23699999999998873 22211 1111112222 3578899999999987543
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.04 E-value=2.2e-06 Score=73.76 Aligned_cols=70 Identities=27% Similarity=0.346 Sum_probs=46.1
Q ss_pred CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhccCC---C-CCCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQDLN---L-NPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqDLN---~-~p~LPFeDnSFDaVtcsvS 217 (220)
+|.+|||||||.+. .+...++. ++|+|+|+|+++++. +.+..+....++. . ...+||++++||+|++...
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 58999999999553 33333333 589999999999984 4433322111111 1 1367899999999997653
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.02 E-value=7.7e-06 Score=69.54 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEeeeec
Q 027661 148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSVd 219 (220)
++.+|||||||.+ .++.+.+...+|+|+|.|+++++. +.++.. +...|+. .+ .++++||+|+|..+++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~---~~-~~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIA---SW-QPPQALDLIFANASLQ 104 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchh---cc-CCCCCccEEEEccChh
Confidence 5889999999944 456555555799999999999984 555433 2223332 22 2457999999987753
No 26
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.00 E-value=8.5e-06 Score=71.24 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN- 199 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~- 199 (220)
+=.+-+++..++.+.+-. .||.+|||||||.+ .++.... ..+|+|+|+++++++. +.++... .+.-...+
T Consensus 33 ~~~gg~~~~~~~l~~l~l---~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~ 108 (263)
T PTZ00098 33 ISSGGIEATTKILSDIEL---NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI 108 (263)
T ss_pred CCCCchHHHHHHHHhCCC---CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc
Confidence 334444454555544422 25899999999954 3454432 3599999999999883 4433221 11111111
Q ss_pred CCCCCCCCCcceEEEee
Q 027661 200 PKLPFEDNSFDVITNVC 216 (220)
Q Consensus 200 p~LPFeDnSFDaVtcsv 216 (220)
.++||++++||+|++..
T Consensus 109 ~~~~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRD 125 (263)
T ss_pred ccCCCCCCCeEEEEEhh
Confidence 36799999999999853
No 27
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.00 E-value=5.6e-06 Score=68.22 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCeEeeeccchhhcc---CCCCCCCcEEEecCCHHHHhh-C-cCcchhhhccCCCCCCC-CCCCCCcceEEEeeee
Q 027661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR-N-PVLTEYVVQDLNLNPKL-PFEDNSFDVITNVCKT 218 (220)
Q Consensus 149 G~~VLDLccSWvSHL---P~~v~~~~VVGLGmN~eELaa-N-~rL~~~~VqDLN~~p~L-PFeDnSFDaVtcsvSV 218 (220)
+.+|||+|||.+.++ .+. ....++|+|.|+++++. . ..+ ++...|++. .+ |+++++||+|+|..++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~~~-~~~~~d~~~--~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVARGV-NVIQGDLDE--GLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHcCC-eEEEEEhhh--cccccCCCCcCEEEEhhHh
Confidence 789999999977663 222 23478999999999984 2 222 233344432 24 4889999999998654
No 28
>PTZ00146 fibrillarin; Provisional
Probab=97.93 E-value=7.3e-06 Score=74.91 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhCCCCC-CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHH----hhCcCcc--hhhhccCC
Q 027661 129 PAIAALTKYYSEVFPPSN-TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEEL----KRNPVLT--EYVVQDLN 197 (220)
Q Consensus 129 ~ai~~LT~lY~~~lp~~~-~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eEL----aaN~rL~--~~~VqDLN 197 (220)
+++..|.+..-.-+.... +||++||||||| |++|+.+.++. ++|+++|++++++ ...++.+ ..++.|.+
T Consensus 112 p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred CcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 456666644422222111 479999999999 99999998864 8999999998643 2222111 12345555
Q ss_pred CCCCCCCCCCCcceEEEeee
Q 027661 198 LNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 198 ~~p~LPFeDnSFDaVtcsvS 217 (220)
...++++...+||+|+|.+.
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC
Confidence 43234444568999999764
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.93 E-value=8e-06 Score=70.26 Aligned_cols=91 Identities=12% Similarity=0.166 Sum_probs=56.4
Q ss_pred CccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCC--CCCcEEEecCCHHHHh-hCcCcchhhh-
Q 027661 121 RFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGY--KQDRIVGMGMNEEELK-RNPVLTEYVV- 193 (220)
Q Consensus 121 RfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v--~~~~VVGLGmN~eELa-aN~rL~~~~V- 193 (220)
|++.--| .....+..+.+..+++ |.+|||||||.+.. +...+ ...+|+|+|.|++|++ ++.++.++-.
T Consensus 34 ~~~p~y~-~~~~~~~~~~~~~~~~----~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~ 108 (247)
T PRK15451 34 RSVPGYS-NIISMIGMLAERFVQP----GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP 108 (247)
T ss_pred hcCCChH-HHHHHHHHHHHHhCCC----CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 3444433 4455566666677764 88999999996665 22211 2369999999999998 4665543211
Q ss_pred ---ccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 194 ---QDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 194 ---qDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
+-+..+ .++|++ .||+|+|...+
T Consensus 109 ~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 109 TPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred CCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 111111 356765 48999987643
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.91 E-value=1.1e-05 Score=74.99 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=46.5
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc------hhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT------EYVVQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~------~~~VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
+|.+|||+|||++.+ +.... ..+|+|+|+|+++++. +.+.. ++...|+ ..+||++++||+|+|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEECCc
Confidence 588999999998864 44433 3589999999999983 32221 1122332 246888999999999755
Q ss_pred e
Q 027661 218 T 218 (220)
Q Consensus 218 V 218 (220)
+
T Consensus 342 l 342 (475)
T PLN02336 342 I 342 (475)
T ss_pred c
Confidence 4
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.91 E-value=1e-05 Score=73.32 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=43.7
Q ss_pred CCCeEeeeccchhhcc---CCCCCCCcEEEecCCHHHHhhCcCcchhhhccCC-----CC-CCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLN-----LN-PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSHL---P~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN-----~~-p~LPFeDnSFDaVtcsvS 217 (220)
+|.+|||||||.+.|. .+ .+..+|+|+|.++.++.+......+.-.+.| .+ -.+|+ +++||+|+|.-.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~-~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLG-AGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 4789999999988773 22 2345799999999988642211111100111 11 36788 899999998543
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.89 E-value=8.3e-06 Score=68.11 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCC---C-CCCCCCCCCcceEEEeeee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNL---N-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~---~-p~LPFeDnSFDaVtcsvSV 218 (220)
+.+|||+|||.+.+ |.+. ..+|+|+|+|+++++. +......-+.+++. + ..++++ ++||+|+|....
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch
Confidence 67999999997665 5543 2599999999999873 43332221111111 1 244664 679999998653
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.83 E-value=7.2e-06 Score=73.13 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN 199 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~ 199 (220)
+.|..+..+++.+.+.- +||++||||+|||++- +.+.. ..+|+|+.+|++..+ ++.++.+.-..+ ...+
T Consensus 44 e~AQ~~k~~~~~~~~~l--~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D 120 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGL--KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD 120 (273)
T ss_dssp HHHHHHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-
T ss_pred HHHHHHHHHHHHHHhCC--CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 35566666666666543 5899999999999875 44433 359999999999999 455554432111 1111
Q ss_pred -CCCCCCCCCcceEEEee
Q 027661 200 -PKLPFEDNSFDVITNVC 216 (220)
Q Consensus 200 -p~LPFeDnSFDaVtcsv 216 (220)
.+++. +||+|++.-
T Consensus 121 ~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 121 YRDLPG---KFDRIVSIE 135 (273)
T ss_dssp GGG------S-SEEEEES
T ss_pred ccccCC---CCCEEEEEe
Confidence 13333 999988753
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.82 E-value=3.5e-05 Score=70.36 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=55.8
Q ss_pred cCCCCHHHHHHHH-HHHHhhCCCCCCCCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHhhCcCcchhh-----hc
Q 027661 123 VTHIDDPAIAALT-KYYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYV-----VQ 194 (220)
Q Consensus 123 VtHIDd~ai~~LT-~lY~~~lp~~~~pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELaaN~rL~~~~-----Vq 194 (220)
..|+|..-++.+. +.+-..+.. .+|.+|||+|||.+.|.-. ..+...|+|+|.|+.++.+-.....+. ++
T Consensus 97 ~~~~~~e~~s~~~~~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~ 174 (314)
T TIGR00452 97 GIKIDSEWRSDIKWDRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAI 174 (314)
T ss_pred cccCCHHHHHHHHHHHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeE
Confidence 6788999888876 223333322 3488999999998888322 113358999999999886311111111 11
Q ss_pred cCCCC-CCCCCCCCCcceEEEeee
Q 027661 195 DLNLN-PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 195 DLN~~-p~LPFeDnSFDaVtcsvS 217 (220)
-++.. ..+|+. ++||+|+|...
T Consensus 175 ~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 175 LEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred EEECCHHHCCCC-CCcCEEEEcch
Confidence 11111 245654 58999998653
No 35
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.80 E-value=2.5e-05 Score=65.61 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhh----ccCCCCC-CCCCC
Q 027661 136 KYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLNP-KLPFE 205 (220)
Q Consensus 136 ~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~p-~LPFe 205 (220)
++..+.+.. ++|.+|||+|||.+. ++.+.++ .++|+|+|.++++++ ++.++...-. +-.+.+. +.+.+
T Consensus 62 ~~~~~~l~~--~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 62 AMMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHhcCC--CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 334444433 358999999999543 3333333 369999999999987 3555543321 1122221 23335
Q ss_pred CCCcceEEEeeee
Q 027661 206 DNSFDVITNVCKT 218 (220)
Q Consensus 206 DnSFDaVtcsvSV 218 (220)
+.+||+|+|..+.
T Consensus 140 ~~~fD~Ii~~~~~ 152 (205)
T PRK13944 140 HAPFDAIIVTAAA 152 (205)
T ss_pred CCCccEEEEccCc
Confidence 6799999998764
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.78 E-value=2.8e-05 Score=65.92 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=53.2
Q ss_pred CccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCC--CCCcEEEecCCHHHHh-hCcCcchhhh-
Q 027661 121 RFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGY--KQDRIVGMGMNEEELK-RNPVLTEYVV- 193 (220)
Q Consensus 121 RfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v--~~~~VVGLGmN~eELa-aN~rL~~~~V- 193 (220)
|.+..-+ .....+..+-...++ ++.+|||||||.+.. +.+.+ ...+|+|+|+|+++|+ ++.++.++..
T Consensus 31 ~~~p~y~-~~~~~~~~l~~~~~~----~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~ 105 (239)
T TIGR00740 31 RSVPGYS-NIITAIGMLAERFVT----PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE 105 (239)
T ss_pred ccCCCHH-HHHHHHHHHHHHhCC----CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 4444332 444555553333343 478999999996665 22222 2368999999999998 3555543211
Q ss_pred ---ccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 194 ---QDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 194 ---qDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
.-+..+ .++|++ ++|+|+|..++
T Consensus 106 ~~v~~~~~d~~~~~~~--~~d~v~~~~~l 132 (239)
T TIGR00740 106 IPVEILCNDIRHVEIK--NASMVILNFTL 132 (239)
T ss_pred CCeEEEECChhhCCCC--CCCEEeeecch
Confidence 111111 245665 48999887664
No 37
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.78 E-value=8.9e-06 Score=68.32 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=49.4
Q ss_pred HHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc---cCCCCC--CCC--CCC
Q 027661 138 YSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLNP--KLP--FED 206 (220)
Q Consensus 138 Y~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~p--~LP--FeD 206 (220)
+.++++. ++.+|||||||.+.+ +.......+|+|+|.|+++++. ..++...... -++.+. .+| +++
T Consensus 33 ~~~~~~~---~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 109 (202)
T PRK00121 33 WAELFGN---DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD 109 (202)
T ss_pred HHHHcCC---CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence 4455553 367999999996655 4343444689999999999983 4333221111 111121 355 889
Q ss_pred CCcceEEEeee
Q 027661 207 NSFDVITNVCK 217 (220)
Q Consensus 207 nSFDaVtcsvS 217 (220)
++||+|++.+.
T Consensus 110 ~~~D~V~~~~~ 120 (202)
T PRK00121 110 GSLDRIYLNFP 120 (202)
T ss_pred cccceEEEECC
Confidence 99999998764
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.77 E-value=1.3e-05 Score=59.16 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=44.3
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCC--CCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNP--KLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p--~LPFeDnSFDaVtcsvS 217 (220)
++.+|||+|||++.+ +....+..+|+|+|.|+++++. +..+...- ++-.+.+. .++...++||+|++..+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 378999999996665 4444434699999999999983 43333221 11111111 14444579999998654
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.77 E-value=1.5e-05 Score=67.42 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=44.6
Q ss_pred hhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC-CCCCCCCCCcce
Q 027661 140 EVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN-PKLPFEDNSFDV 211 (220)
Q Consensus 140 ~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~-p~LPFeDnSFDa 211 (220)
..+|+ |.+|||+|||.+.. +.......+|+|+|.|+++++ ++.++.+.-..+ .+.+ .+++. +++||+
T Consensus 41 ~~l~~----g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDl 115 (187)
T PRK00107 41 PYLPG----GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDV 115 (187)
T ss_pred hhcCC----CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccE
Confidence 44553 78999999995532 222223469999999999987 344433321111 1111 24566 789999
Q ss_pred EEEe
Q 027661 212 ITNV 215 (220)
Q Consensus 212 Vtcs 215 (220)
|+|.
T Consensus 116 V~~~ 119 (187)
T PRK00107 116 VTSR 119 (187)
T ss_pred EEEc
Confidence 9985
No 40
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.76 E-value=2.7e-05 Score=65.99 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=47.5
Q ss_pred CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHh-hCcCcchhhhcc---CCCCC-CCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNP-KLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p-~LPFeDnSFDaVtcsvSV 218 (220)
+|.+|||+|||.+.. +...++. ++|+|+|.|+++++ ++.++...-..+ .+.+. ..+++++.||+|+|..++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 589999999994442 3333333 69999999999998 466665432221 12221 334577899999998765
Q ss_pred c
Q 027661 219 H 219 (220)
Q Consensus 219 d 219 (220)
.
T Consensus 156 ~ 156 (212)
T PRK13942 156 P 156 (212)
T ss_pred c
Confidence 3
No 41
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.75 E-value=1.6e-05 Score=74.42 Aligned_cols=111 Identities=22% Similarity=0.166 Sum_probs=87.7
Q ss_pred ccccCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc--hhhccCCCCCCCcEEEecCCHHH
Q 027661 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEE 181 (220)
Q Consensus 104 ~f~R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS--WvSHLP~~v~~~~VVGLGmN~eE 181 (220)
++.-..=..+-.|+..|.+..|-+.-.+..-+..|++.+.+ |+++||+.|| +.+++.+.++...++|++.|+.|
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e 145 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFP----GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYE 145 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcc----cccccccCcCcCchhHHHHHhccCCccCCCcCHHH
Confidence 33334445677888899999999999999999999999864 8999999999 99999999999999999999999
Q ss_pred HhhCcCcch-hhhccCCCC-----CCCCCCCCCcceEEEeeee
Q 027661 182 LKRNPVLTE-YVVQDLNLN-----PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 182 LaaN~rL~~-~~VqDLN~~-----p~LPFeDnSFDaVtcsvSV 218 (220)
+.+...+.. ..+++.+.. ++-||+||+||.|-+--++
T Consensus 146 ~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 146 AFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred HHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 997444443 333333322 3669999999999765544
No 42
>PRK04266 fibrillarin; Provisional
Probab=97.75 E-value=3.8e-05 Score=66.73 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=47.6
Q ss_pred hhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcch-----hhhccCCCCC-CCCCCCCCc
Q 027661 140 EVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTE-----YVVQDLNLNP-KLPFEDNSF 209 (220)
Q Consensus 140 ~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~-----~~VqDLN~~p-~LPFeDnSF 209 (220)
+.++- +||.+|||+||| +..|+.+.++.++|+|+|.+++||+. ..+..+ .+..|.+... ..++. ++|
T Consensus 66 ~~l~i--~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 66 KNFPI--KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hhCCC--CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccC
Confidence 34443 369999999999 78888777766899999999998772 222221 1223433210 12333 569
Q ss_pred ceEEEee
Q 027661 210 DVITNVC 216 (220)
Q Consensus 210 DaVtcsv 216 (220)
|+|++..
T Consensus 143 D~i~~d~ 149 (226)
T PRK04266 143 DVIYQDV 149 (226)
T ss_pred CEEEECC
Confidence 9999754
No 43
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.74 E-value=0.0001 Score=66.82 Aligned_cols=67 Identities=19% Similarity=0.362 Sum_probs=50.4
Q ss_pred CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh--CcCcc-hhhhccCCCCCCCCCCCCCcceEEEeeeec
Q 027661 149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR--NPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa--N~rL~-~~~VqDLN~~p~LPFeDnSFDaVtcsvSVd 219 (220)
..-|||++||. ++-|-++ .-..+|+|++++||+. ...++ +.+.+|+. .-|||...+||+||..-+||
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQ 123 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQ 123 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeee
Confidence 56899999993 3445432 1478999999999994 44444 44557766 57899999999999887776
No 44
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.74 E-value=2.5e-05 Score=65.24 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=56.0
Q ss_pred CcCCCCccCCCCHHHH---HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661 116 FYETPRFVTHIDDPAI---AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVL 188 (220)
Q Consensus 116 FY~~PRfVtHIDd~ai---~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL 188 (220)
-|..+-++.|+=...+ +.+.+...+.++....++.+|||+|||.+.. +.+. ..+|+|+|+|++++.. +.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~ 97 (219)
T TIGR02021 20 IYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRA 97 (219)
T ss_pred hhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
Confidence 4555666777555333 2333333344442112478999999995544 4332 3589999999999983 5554
Q ss_pred chh--------hhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 189 TEY--------VVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 189 ~~~--------~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
... .+.|+. .+| ++||+|++...+
T Consensus 98 ~~~~~~~~i~~~~~d~~---~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 98 QGRDVAGNVEFEVNDLL---SLC---GEFDIVVCMDVL 129 (219)
T ss_pred HhcCCCCceEEEECChh---hCC---CCcCEEEEhhHH
Confidence 322 112221 233 899999987543
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.73 E-value=2.4e-05 Score=72.64 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=47.8
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch------hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE------YVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~------~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
++.+|||||||-+.+ |.+. ..+|+|+|+|+++++.+..+.. +...|++. ..+||++++||+|+|..++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhH
Confidence 477999999995544 5443 3699999999999985432221 22234432 2578999999999998654
No 46
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.71 E-value=2.4e-05 Score=70.25 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=48.0
Q ss_pred CCCeEeeeccchhhccCCC-CCCCcEEEecCCHHHHh-hCcCcchhhhccC---CCC-CCCCCCCCCcceEEE
Q 027661 148 PGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELK-RNPVLTEYVVQDL---NLN-PKLPFEDNSFDVITN 214 (220)
Q Consensus 148 pG~~VLDLccSWvSHLP~~-v~~~~VVGLGmN~eELa-aN~rL~~~~VqDL---N~~-p~LPFeDnSFDaVtc 214 (220)
+|..|||+|||.+..+-+- ....+|+|.|.|++++. ++.++..+-+.++ +.+ .++|+.+++||+|+|
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 5889999999977763221 12368999999999998 3555655543332 222 468888999999998
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.69 E-value=8.3e-05 Score=60.31 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=45.8
Q ss_pred CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhh-CcCcc-----hhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKR-NPVLT-----EYVVQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaa-N~rL~-----~~~VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
++.+|||+|||.+. ++...... .+++|+|.|++.++. +.++. .+...|+ .++|+++++||+|+|..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 58899999999443 33333322 589999999998874 44332 1122333 256788899999999876
Q ss_pred e
Q 027661 218 T 218 (220)
Q Consensus 218 V 218 (220)
+
T Consensus 116 ~ 116 (223)
T TIGR01934 116 L 116 (223)
T ss_pred e
Confidence 4
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.69 E-value=7.6e-05 Score=68.15 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=43.6
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC---CCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN---PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~---p~LPFeDnSFDaVtcsvS 217 (220)
+|.+|||||||.+.- +.+. ..+|+|+|+|++||+ ++.+..+....+ .|.. ..++..+++||+|+|...
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 478999999996543 4332 258999999999998 355443321110 1110 123334789999999765
Q ss_pred e
Q 027661 218 T 218 (220)
Q Consensus 218 V 218 (220)
+
T Consensus 222 L 222 (315)
T PLN02585 222 L 222 (315)
T ss_pred E
Confidence 3
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.68 E-value=5e-05 Score=70.50 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCC-C
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLN-P 200 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~-p 200 (220)
+++...+.+..+-+. +.. +||.+||||||||+.- +.+.. ..+|+|+|+|+++++ ++.+.....++-...+ .
T Consensus 148 L~~Aq~~k~~~l~~~-l~l--~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~ 223 (383)
T PRK11705 148 LEEAQEAKLDLICRK-LQL--KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR 223 (383)
T ss_pred HHHHHHHHHHHHHHH-hCC--CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence 444444444443333 322 3689999999997765 33322 258999999999998 4555432111101111 1
Q ss_pred CCCCCCCCcceEEEee
Q 027661 201 KLPFEDNSFDVITNVC 216 (220)
Q Consensus 201 ~LPFeDnSFDaVtcsv 216 (220)
.+ +++||+|++..
T Consensus 224 ~l---~~~fD~Ivs~~ 236 (383)
T PRK11705 224 DL---NGQFDRIVSVG 236 (383)
T ss_pred hc---CCCCCEEEEeC
Confidence 12 57999998753
No 50
>PRK14967 putative methyltransferase; Provisional
Probab=97.64 E-value=6.7e-05 Score=63.38 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=42.6
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--hhccCCCCCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--VVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+|.+|||+|||.+.. +... ...+|+|+|+|+++++. +.++... -+.-.+.+..-++++++||+|+|.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n 108 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN 108 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence 478999999995443 3332 33599999999999972 3322211 112222333334678899999985
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.60 E-value=4.3e-05 Score=63.10 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhh-ccCCCC-CCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV-QDLNLN-PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V-qDLN~~-p~LPFeDnSFDaVtcsvS 217 (220)
++.+|||+|||.+. ++.+. ..+|+|+|+++++++. +.++..... ..++.. ..++..+++||.|+|...
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcch
Confidence 47899999999655 34332 2479999999999983 444433211 011110 236667899999998654
No 52
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.60 E-value=2.1e-05 Score=73.97 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=47.8
Q ss_pred CCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc---cCCCC-CCCC-CCCCCcceEEE
Q 027661 147 TPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLN-PKLP-FEDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~-p~LP-FeDnSFDaVtc 214 (220)
++|.+|||+|||.+ .|+.+.++ .++|+++|+|+++|+. +.++...-+. -.+.+ ..+| +.+++||+|+|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 35899999999977 67766553 3799999999999984 5555543222 12222 2344 56789999996
No 53
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.52 E-value=8.6e-05 Score=62.40 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCC-CCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNP-KLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p-~LPFeDnSFDaVtcsvS 217 (220)
+|.+|||+|||++.. +.+..+ .++|+|+|.++++++ ++.++.+.-..+ +..+. ..+...+.||+|++...
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 589999999996554 444333 267999999999998 355554432211 11111 22334578999998754
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.51 E-value=0.00015 Score=59.39 Aligned_cols=89 Identities=9% Similarity=0.029 Sum_probs=51.8
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hc
Q 027661 122 FVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQ 194 (220)
Q Consensus 122 fVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---Vq 194 (220)
.+....+..++.+-+... ++ ++.+|||+|||.+.+ +.......+|+|+|.|+++++. +..+..+. ++
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~----~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~ 84 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LH----RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID 84 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CC----CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeE
Confidence 344556666654433331 22 378999999996654 3333333699999999998873 33332221 11
Q ss_pred cCCCCCCCCCCCCCcceEEEeee
Q 027661 195 DLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 195 DLN~~p~LPFeDnSFDaVtcsvS 217 (220)
-++.+...+++ .+||+|++..+
T Consensus 85 ~~~~d~~~~~~-~~~D~v~~~~~ 106 (187)
T PRK08287 85 IIPGEAPIELP-GKADAIFIGGS 106 (187)
T ss_pred EEecCchhhcC-cCCCEEEECCC
Confidence 12222223443 58999998643
No 55
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.49 E-value=6.1e-05 Score=64.72 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=45.1
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh-cc---CCCC-CCC-CCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV-QD---LNLN-PKL-PFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V-qD---LN~~-p~L-PFeDnSFDaVtcsvS 217 (220)
++.+|||+|||.+.. +.+. ..+|+|+|+|+++++. +.++.+.-+ .+ +..+ .++ ++.+++||+|+|...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 367999999996654 5442 3699999999999983 555443211 11 1111 123 467899999999765
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.48 E-value=9.4e-05 Score=60.63 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=44.6
Q ss_pred CCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh-ccCC---CC-CCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV-QDLN---LN-PKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V-qDLN---~~-p~LPFeDnSFDaVtcsvS 217 (220)
++.+|||+|||.+. ++..... ..+|+|+|.+++.++. +.++..... ..++ .+ ..+|+++++||+|+|..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 47899999999433 2222221 3699999999999883 444432100 0011 11 246788899999998765
Q ss_pred e
Q 027661 218 T 218 (220)
Q Consensus 218 V 218 (220)
+
T Consensus 131 l 131 (239)
T PRK00216 131 L 131 (239)
T ss_pred c
Confidence 4
No 57
>PRK06922 hypothetical protein; Provisional
Probab=97.48 E-value=3e-05 Score=77.88 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCCC--CCCCCcceEEEee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKLP--FEDNSFDVITNVC 216 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~LP--FeDnSFDaVtcsv 216 (220)
|.+|||+|||.+.. +.......+|+|+|+|+++++. +.++... ...|. ..|| |++++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEch
Confidence 78999999996543 4444445799999999999983 4333221 11222 2467 8999999999874
No 58
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.48 E-value=0.00013 Score=68.03 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=46.1
Q ss_pred CCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc----cCCCC-CCCCC--CCCCcceEEE
Q 027661 147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ----DLNLN-PKLPF--EDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq----DLN~~-p~LPF--eDnSFDaVtc 214 (220)
++|.+|||+|||-+ .|+.+.++.++|+|+|.++++|+. +.++...-+. ....+ ..+++ ++++||+|+|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 36899999999944 676655556799999999999984 5555443221 11112 22333 6789999996
No 59
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.48 E-value=8.6e-05 Score=68.06 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=46.6
Q ss_pred CCCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHh-hCcCcchhh---hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661 148 PGVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYV---VQDLNLN-PKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 148 pG~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~---VqDLN~~-p~LPFeDnSFDaVtcsvSV 218 (220)
+|.+|||+|||.+ .++.+.++. ++|+|+|.++++++ ++.++...- +.....+ .+.+.++.+||+|++++++
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 5889999999943 345444432 58999999999987 344443321 1112222 2344556789999998775
Q ss_pred c
Q 027661 219 H 219 (220)
Q Consensus 219 d 219 (220)
+
T Consensus 160 ~ 160 (322)
T PRK13943 160 D 160 (322)
T ss_pred H
Confidence 3
No 60
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.46 E-value=4.9e-05 Score=66.51 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCCCCCCCcceEEE
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLPFEDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LPFeDnSFDaVtc 214 (220)
+||.+|||+||| ...|+...++. ++|+++|.|+++++. ..++...-+ +-.+.+ ..++...++||+|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 368999999999 55566554443 799999999999983 555544322 222222 234555667999997
No 61
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.46 E-value=8.1e-05 Score=68.22 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCCCCCCCCC-------CCcceEEEe
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFED-------NSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~p~LPFeD-------nSFDaVtcs 215 (220)
|++|||++|| ..-||.+. ...|+|+|.++++.+ +|.....-.+.+.+-.-+|-|++ ..||+|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeH
Confidence 7899999999 55567663 279999999999999 46653333334443222232222 229999996
No 62
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.46 E-value=7.4e-05 Score=70.04 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=45.2
Q ss_pred CCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC-CCCCCCCCcceEEE
Q 027661 147 TPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP-KLPFEDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p-~LPFeDnSFDaVtc 214 (220)
.+|.+|||+|||.+ .|+.+.+. .++|+|+|+|+++++. +.++...-+ +-.+.+. +++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 35899999999966 46655443 3699999999999984 555544322 1122222 233 5789999996
No 63
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.46 E-value=1.1e-05 Score=58.99 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=37.3
Q ss_pred eeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCC-C--CCCCCCCcceEEEeeeec
Q 027661 153 LDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNP-K--LPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 153 LDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p-~--LPFeDnSFDaVtcsvSVd 219 (220)
||++||.+.. +.+.....+++|+|+|+++|+ ++.++.+...+. ++... . .+...++||+|++...++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 8999996655 333344589999999999996 588887754322 22221 1 112227999999986543
No 64
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.46 E-value=0.00017 Score=63.53 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCeEeeeccchhh-----------ccCCCCC-CCcEEEecCCHHHHhh
Q 027661 148 PGVSILDLCSSWVS-----------HFPPGYK-QDRIVGMGMNEEELKR 184 (220)
Q Consensus 148 pG~~VLDLccSWvS-----------HLP~~v~-~~~VVGLGmN~eELaa 184 (220)
++.+|||++||.+- ++|.... ..+|+|.|+|+++|+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 36799999999663 1333111 2589999999999993
No 65
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.46 E-value=8e-05 Score=69.60 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=46.9
Q ss_pred CCCCeEeeeccch---hhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCC----CCCCCcceEE
Q 027661 147 TPGVSILDLCSSW---VSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLP----FEDNSFDVIT 213 (220)
Q Consensus 147 ~pG~~VLDLccSW---vSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LP----FeDnSFDaVt 213 (220)
++|.+|||+|||- ..|+.+.++. ++|+++|.|+++++. ..++...-+ .-.+.+ .+++ +.+++||+|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3689999999994 4677665443 799999999999984 555544322 222222 1333 6678999999
Q ss_pred Ee
Q 027661 214 NV 215 (220)
Q Consensus 214 cs 215 (220)
|-
T Consensus 331 ~D 332 (434)
T PRK14901 331 LD 332 (434)
T ss_pred Ee
Confidence 73
No 66
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.42 E-value=5.8e-05 Score=64.20 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=42.9
Q ss_pred CCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhhCcCcchhhhccCCCCCCC-----CCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~L-----PFeDnSFDaVtcsvS 217 (220)
+|.+||||||| |..++.+.++. ++|+|+|+++ +...+.+ ++...|+.....+ ++.+.+||+|+|..+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~--~~~~~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP--MDPIVGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc--ccCCCCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 48899999999 55566665543 7999999987 2222222 1222343332111 477899999998653
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.41 E-value=7.5e-05 Score=61.96 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=41.0
Q ss_pred eEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCCCCCCCCCCCCcceEEEee
Q 027661 151 SILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 151 ~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcsv 216 (220)
+|||++|||+. ++.+..+..+|+|+|+|+++++ ++.++.+. ...|.. +.|+++ +||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~---~~~~~~-~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA---KDPFPD-TYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc---cCCCCC-CCCEeehHH
Confidence 69999999766 3444333468999999999988 35554331 122322 336654 899998753
No 68
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.41 E-value=9.5e-05 Score=60.66 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=40.6
Q ss_pred CCCeEeeeccchhh---ccCCCC-CCCcEEEecCCHHHHhhCcCcchhhhccCCCCC---CC--CCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVS---HFPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNP---KL--PFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v-~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p---~L--PFeDnSFDaVtcs 215 (220)
+|.+|||+|||++. ++.... +.++|+|+|+|+++ ..+.++ +...|+.... .+ .+++++||+|+|.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--~~~~i~-~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--PIENVD-FIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--cCCCce-EEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 48899999999654 454443 23689999999865 112221 2223443321 11 2568899999984
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.35 E-value=0.00024 Score=59.35 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+.+|||+|||.+.. +....+..+|+|+|.|+++++. +..+...- ++-.+.+..-++++++||+|+|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEEC
Confidence 56899999996654 3333334599999999999983 43333221 11122222225678999999983
No 70
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.35 E-value=0.00014 Score=65.55 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=40.8
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhc---cCCCCCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQ---DLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~Vq---DLN~~p~LPFeDnSFDaVtcs 215 (220)
+|.+|||++||-++= ++. -...|+|.|++++.+. +...-.+..+. ..+..-+|-.+..+||+|||-
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr--~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLAR--LGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHH--CCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEh
Confidence 389999999994432 222 1269999999999998 33222222121 111112333444899999994
No 71
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.34 E-value=0.00029 Score=60.86 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCCeEeeeccchhhcc--CCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCCCCCCCCCCCcceEEEee
Q 027661 148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 148 pG~~VLDLccSWvSHL--P~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsv 216 (220)
+|.+|||+|||.+... -...+..+|+|+|+|+++++ ++.++... ++.....++..|.+||.|+|..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~~~~~~~~~~~~~fD~Vvani 187 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GVELNVYLPQGDLKADVIVANI 187 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CCCceEEEccCCCCcCEEEEcC
Confidence 3889999999966441 11223457999999999998 34444332 1212234555566899999854
No 72
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.33 E-value=9.6e-05 Score=61.72 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=39.1
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh-------hhccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY-------VVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
|.+|||+|||.+.. +......++|+|+|.|+++++ ++..+.+. ...|.. +++ .+++||+|+|.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~---~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE---DFQ-HEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh---hcc-ccCCccEEEeh
Confidence 78999999997642 222122368999999999776 23332221 112222 233 36899999874
No 73
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.30 E-value=0.00023 Score=66.66 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch-------hhhccCCCC
Q 027661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE-------YVVQDLNLN 199 (220)
Q Consensus 131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~-------~~VqDLN~~ 199 (220)
-+.|.+.-.+.+.. ++|.+|||||||.+.. +.... .+|+|+|.|+++++ ++..+.. +...|....
T Consensus 282 ~e~l~~~vl~~l~~--~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 282 NQKMVARALEWLDP--QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHHhcC--CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 34444433344432 3588999999995544 44432 69999999999998 3333221 222333322
Q ss_pred -CCCCCCCCCcceEEE
Q 027661 200 -PKLPFEDNSFDVITN 214 (220)
Q Consensus 200 -p~LPFeDnSFDaVtc 214 (220)
.++|+++++||+|++
T Consensus 358 l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 358 FTDQPWALGGFDKVLL 373 (443)
T ss_pred hhhhhhhcCCCCEEEE
Confidence 356788899999986
No 74
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.27 E-value=0.00027 Score=65.96 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=43.5
Q ss_pred CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCCC-CCC--CCCCCcceEEE
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLNP-KLP--FEDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~p-~LP--FeDnSFDaVtc 214 (220)
++|.+|||+||| ...|+.+....++|+|+|.|+++++. ..++...- +.-++.+. +++ +++++||.|+|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence 358999999999 44566554434799999999999983 44433321 11112221 222 45789999994
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.27 E-value=0.00024 Score=66.63 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=55.9
Q ss_pred cccCcCCCCccC--CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661 113 DSLFYETPRFVT--HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR-NP 186 (220)
Q Consensus 113 D~~FY~~PRfVt--HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa-N~ 186 (220)
+-.|.+.|-.-. +||.+.+ ++-+.||.. .+.+|||||||. ...+.......+|+|+|.|+.+++. +.
T Consensus 198 ~~~~~~~~gVFs~~~LD~Gtr-----llL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~ 270 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGAR-----FFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL 270 (378)
T ss_pred eEEEEecCCccCCCCcChHHH-----HHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 445555555443 4887754 466677763 356999999993 3334333333699999999999983 33
Q ss_pred Ccchh----------hhccCCCCCCCCCCCCCcceEEEe
Q 027661 187 VLTEY----------VVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 187 rL~~~----------~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
.+... ...|.-. .+++.+||+|+|.
T Consensus 271 N~~~n~~~~~~~v~~~~~D~l~----~~~~~~fDlIlsN 305 (378)
T PRK15001 271 NVETNMPEALDRCEFMINNALS----GVEPFRFNAVLCN 305 (378)
T ss_pred HHHHcCcccCceEEEEEccccc----cCCCCCEEEEEEC
Confidence 33211 1122211 2345689999994
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.25 E-value=7.9e-05 Score=61.97 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCCC-CC---CCCCCCcceEEEeee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLNP-KL---PFEDNSFDVITNVCK 217 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~p-~L---PFeDnSFDaVtcsvS 217 (220)
+.+|||||||.+.. +.......+|+|+|+++++++. +.++...-.++ ++.+. ++ .+++++||.|++.+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 56999999995554 4444444799999999999984 44443321111 22221 22 267789999998764
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.23 E-value=0.00043 Score=58.99 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=41.6
Q ss_pred CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc---hhhhccCCCCCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT---EYVVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~---~~~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
++.+|||+|||.+. ++.......+|+|.|.|++.++. +..+. ..-++-.+.+..-|+.+++||+|+|.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence 47799999999443 33333334699999999998883 33322 00111122222234457899999983
No 78
>PRK14968 putative methyltransferase; Provisional
Probab=97.22 E-value=0.00027 Score=56.23 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc-----CCCCCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD-----LNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD-----LN~~p~LPFeDnSFDaVtcs 215 (220)
+|.+|||+||| +..++... ..+|+|+|.|+++++ ++..+...-.++ ++.+..-++.+++||+|++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence 47899999999 44445443 479999999999987 333332211111 11122225666799999874
No 79
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.21 E-value=0.00025 Score=59.14 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh------hccCCCCCCCCCCCCCcceEEEeee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV------VQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~------VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
+.+|||+|||++.. +.+. ..+|+|+|+|+++++. +.+..+.- +.|++ .+|++ ++||+|+|...
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~---~~~~~-~~fD~I~~~~~ 103 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN---AAALN-EDYDFIFSTVV 103 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch---hcccc-CCCCEEEEecc
Confidence 46999999996664 5442 3599999999999984 33322211 11221 34554 68999998754
No 80
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.20 E-value=0.00037 Score=58.07 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=43.5
Q ss_pred CCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCC---CCCCCCC-CCCCcceEEEeeee
Q 027661 147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLN---LNPKLPF-EDNSFDVITNVCKT 218 (220)
Q Consensus 147 ~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN---~~p~LPF-eDnSFDaVtcsvSV 218 (220)
++|.+|||+|||.+. ++.... ++|+|+|.++++++ ++.++..+-..+++ .+..-.+ ++++||+|++..++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 358999999999543 243322 58999999999887 35555443221111 1111112 35789999987653
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.16 E-value=0.00027 Score=62.63 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=42.6
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCCCCCCCCCCCcceEEEee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~p~LPFeDnSFDaVtcsv 216 (220)
+|.+|||+|||.+.. +. ..+..+|+|+|+++.+++. +..+....+ .....+ .+++.+++||+|+|..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEEec
Confidence 488999999996543 21 2334699999999999983 333322111 111111 3455678999999854
No 82
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.15 E-value=0.00071 Score=62.31 Aligned_cols=67 Identities=28% Similarity=0.628 Sum_probs=40.6
Q ss_pred CCCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHh-hCcCcch-------------hhhccCCCC-------
Q 027661 148 PGVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTE-------------YVVQDLNLN------- 199 (220)
Q Consensus 148 pG~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~-------------~~VqDLN~~------- 199 (220)
++.+||||||| |..+ +-.++||+|++.+.|+ +..|..+ +....+..+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 68999999999 6554 2369999999999998 4666621 111112221
Q ss_pred CCCCCCCCCcceEEEeeeec
Q 027661 200 PKLPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 200 p~LPFeDnSFDaVtcsvSVd 219 (220)
..++.....||+|.|-|++.
T Consensus 137 ~~~~~~~~~FDvVScQFalH 156 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALH 156 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GG
T ss_pred hhccccCCCcceeehHHHHH
Confidence 23445557999999998863
No 83
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.13 E-value=0.00029 Score=62.69 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+.+|||+|||.+.. +.......+|+|+|.|++.++ ++..+...- +.-++.+..-++++++||+|+|.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 56899999995543 333233359999999999998 333332221 11122222224456789999983
No 84
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.09 E-value=0.00035 Score=65.35 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=42.8
Q ss_pred CCCeEeeeccchh---hccCCCC-CCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC-CC--CCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWV---SHFPPGY-KQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP-KL--PFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWv---SHLP~~v-~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p-~L--PFeDnSFDaVtcs 215 (220)
+|.+|||+|||.+ .|+.+.+ ..++|+|+|+|+++++. +.++...-+ .-++.+. ++ +++ ++||+|+|-
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 5889999999944 4665544 24799999999999873 444433221 1122221 22 233 789999973
No 85
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.08 E-value=0.00052 Score=63.12 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=54.4
Q ss_pred cccCcCCCCcc--CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661 113 DSLFYETPRFV--THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NP 186 (220)
Q Consensus 113 D~~FY~~PRfV--tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~ 186 (220)
+-.++..|-.- .|+|.+.. +.-+.++.. ...+|||||||++.. +.+.....+|+|+|.|+.+|+. ..
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~-----lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~ 238 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQ-----LLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA 238 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHH-----HHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 44555555543 45887744 333444431 245899999996654 4443333589999999999983 33
Q ss_pred Ccchhhh--ccCCCCCCCCCCCCCcceEEEe
Q 027661 187 VLTEYVV--QDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 187 rL~~~~V--qDLN~~p~LPFeDnSFDaVtcs 215 (220)
.+....+ +-...+. +...+++||.|+|.
T Consensus 239 nl~~n~l~~~~~~~D~-~~~~~~~fDlIvsN 268 (342)
T PRK09489 239 TLAANGLEGEVFASNV-FSDIKGRFDMIISN 268 (342)
T ss_pred HHHHcCCCCEEEEccc-ccccCCCccEEEEC
Confidence 3322111 0011111 22236789999995
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.07 E-value=0.00019 Score=63.26 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=41.9
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch------hhhccCCCCCCCCCCCCCcceEEEeee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE------YVVQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~------~~VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
+.+|||+|||.+.. +... ..+|+|+|.|+++++. +.+..+ ..+.|++. .++ +++||+|+|...
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~---~~~-~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS---ASI-QEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc---ccc-cCCccEEEEcch
Confidence 34999999997664 4432 3599999999999873 333322 12234443 233 789999998764
No 87
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.06 E-value=0.0006 Score=61.58 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=41.0
Q ss_pred CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
.+|||+|||.+.. +.......+|+|+|+|++.++ ++..+...- ++-++.+..-++++++||+|+|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence 6899999996554 433333469999999999998 333333221 11122222113446789999984
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.04 E-value=0.00058 Score=56.73 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=42.9
Q ss_pred CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHhh-CcCcchhh----hccCCCCC-C-CCCCCCCcceEEEee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNP-K-LPFEDNSFDVITNVC 216 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p-~-LPFeDnSFDaVtcsv 216 (220)
+|..|||+|||.+.. +....+ .++|+|+|.|+++++. +.++..+- +..++.+. + ++..+++||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 589999999996644 222232 3699999999999882 33322221 11122221 2 344457899999855
Q ss_pred e
Q 027661 217 K 217 (220)
Q Consensus 217 S 217 (220)
+
T Consensus 120 ~ 120 (198)
T PRK00377 120 G 120 (198)
T ss_pred C
Confidence 4
No 89
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.00 E-value=0.00059 Score=55.47 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=38.6
Q ss_pred CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCCC-CCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLNP-KLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~p-~LPFeDnSFDaVtcs 215 (220)
+.+|||||||. ..++.... .+|+|+|+|+++++. +.++...- +.-.+.+. +. .+.+||+|++.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc--cCCcccEEEEC
Confidence 56899999994 44454432 289999999999883 33332211 11111121 22 24599999986
No 90
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.94 E-value=0.0011 Score=54.01 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+.+|||||||++ .++.......+|+++|.|++.++. +..+...- ++-++.+.--++++.+||.|+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence 679999999944 223333333479999999999983 33333321 22222333334558999999985
No 91
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.89 E-value=0.00012 Score=54.28 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=39.4
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhh----ccCCCC-CCC--CCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLN-PKL--PFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~-p~L--PFeDnSFDaVtcs 215 (220)
|.+|||+|||-+.- +.... ..+|+|+|+|++-++ ++..+..... +-.+.+ .++ ++++++||+|++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 67999999993332 22222 469999999999887 3433333211 111111 122 4789999999985
No 92
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.86 E-value=0.00099 Score=53.93 Aligned_cols=66 Identities=9% Similarity=0.105 Sum_probs=44.3
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-CCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-PKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-p~LPFeDnSFDaVtcs 215 (220)
+|.+|||+|||.+.. +.+. ..+|+|+|.|+.+++. +.++... -++-++.+ .++++++.+||.|+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEEC
Confidence 478999999995544 4443 3699999999999884 4444321 11222333 3667888889998764
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.84 E-value=0.00095 Score=59.53 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcc
Q 027661 124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLT 189 (220)
Q Consensus 124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~ 189 (220)
|.-.....+...+...+.+++ |.+|||||||-+. .|-+... ..+|+|+|+|++||+. ..+|.
T Consensus 43 tr~E~~il~~~~~~ia~~~~~----~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGA----GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALA 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCC----CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHH
Confidence 333334445555555555654 7799999999554 3433332 3589999999999983 44443
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.77 E-value=0.0014 Score=57.70 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=40.9
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+.+|||+|||.+. ++.......+|+|+|.|++.++ ++..+...- ++-...+..-++++++||+|++.
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 3689999999554 3443333468999999999998 333332211 11111222235566689999873
No 95
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.77 E-value=0.0014 Score=60.88 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch-------hhhccC
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE-------YVVQDL 196 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~-------~~VqDL 196 (220)
....+.|.+.-.+.+.. +++.+||||+||.+.. +... ..+|+|+|+|+++++ ++..+.. +...|.
T Consensus 274 ~~~~~~l~~~~~~~l~~--~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~ 349 (431)
T TIGR00479 274 SGQNEKLVDRALEALEL--QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL 349 (431)
T ss_pred HHHHHHHHHHHHHHhcc--CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH
Confidence 33444444333444432 2478999999995444 4443 258999999999998 3333322 122232
Q ss_pred CC-CCCCCCCCCCcceEEE
Q 027661 197 NL-NPKLPFEDNSFDVITN 214 (220)
Q Consensus 197 N~-~p~LPFeDnSFDaVtc 214 (220)
.. .+++++++++||+|++
T Consensus 350 ~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred HHHHHHHHhcCCCCCEEEE
Confidence 21 1356677889999986
No 96
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.71 E-value=0.0015 Score=58.51 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchh-------hhc
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEY-------VVQ 194 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~-------~Vq 194 (220)
......+.|-+.-.+.+.. .++.+|||||||.+. ++.. ...+|+|+|.|+++++ ++..+... ...
T Consensus 153 ~n~~~~~~l~~~v~~~l~~--~~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~ 228 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRE--LPPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQAL 228 (315)
T ss_pred cCHHHHHHHHHHHHHHHHh--cCCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Confidence 4444455554444444432 136799999999443 3544 2368999999999998 33333221 122
Q ss_pred cCCCCCCCCCCCCCcceEEE
Q 027661 195 DLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 195 DLN~~p~LPFeDnSFDaVtc 214 (220)
|.... ++-.++.||+|++
T Consensus 229 D~~~~--~~~~~~~~D~Vv~ 246 (315)
T PRK03522 229 DSTQF--ATAQGEVPDLVLV 246 (315)
T ss_pred CHHHH--HHhcCCCCeEEEE
Confidence 22211 1113457999986
No 97
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.64 E-value=0.0056 Score=53.85 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh----CcCcchhhhccCCC-CC-CCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR----NPVLTEYVVQDLNL-NP-KLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa----N~rL~~~~VqDLN~-~p-~LPFeDnSFDaVtcsvS 217 (220)
+|..|||++|| +...+.+. +..+|+|+|.+.+||.. |++...+-..|+.. .+ .++.+=..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 48899999999 44445443 44799999999988873 55543332223221 11 22333357888888764
No 98
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.63 E-value=0.00079 Score=56.32 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCCCCCCCCCCCcceEEEeee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
++.+|||||||.+.. +-.. ..+|+|+|+|++.++. +.++.... ....+...-+...++.||+|+|...
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 588999999996554 3221 2579999999999873 43322110 1111111112245689999999654
No 99
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.58 E-value=0.0014 Score=63.09 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=41.1
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhh----ccCCCCCCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~p~LPFeDnSFDaVtc 214 (220)
+.+|||+|||.+.- +.......+|+|+|.|++.++ ++..+..+-+ .-++.+.--++++++||+|+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence 56899999995433 333334469999999999998 3443332211 112222212345678999998
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=96.56 E-value=0.0018 Score=59.26 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=39.3
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtc 214 (220)
+.+|||+|||.+. ++.......+|+|+|.|+++++. +.++.+ +...|+- +++ .+.+||+|++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~---e~~-~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVF---EFE-SNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchh---hhc-ccCCCcEEEE
Confidence 5699999999553 33332223599999999999994 333322 2223332 222 3578999998
No 101
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.002 Score=60.70 Aligned_cols=103 Identities=23% Similarity=0.389 Sum_probs=71.1
Q ss_pred CccccccCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCC-CCCCCcEEEecCCH
Q 027661 101 KEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNE 179 (220)
Q Consensus 101 ~~~~f~R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~-~v~~~~VVGLGmN~ 179 (220)
..++|.+.|. +..=|..| .-+|+.-..++.++ ++. ++|..|||=+||.++-|=+ .+-..+|+|.|+.+
T Consensus 161 dr~~~~~r~~--~kRPf~~p---~s~~P~lAR~mVNL-a~v-----~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~ 229 (347)
T COG1041 161 DRKAFEKRDP--EKRPFFRP---GSMDPRLARAMVNL-ARV-----KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDE 229 (347)
T ss_pred ChHHHhhcCc--ccCCccCc---CCcCHHHHHHHHHH-hcc-----ccCCEeecCcCCccHHHHhhhhcCceEeecchHH
Confidence 4455555554 23223344 55677666666555 222 3499999999998888643 23347999999999
Q ss_pred HHHh-hCcCcchhhhcc---CCC-C-CCCCCCCCCcceEEE
Q 027661 180 EELK-RNPVLTEYVVQD---LNL-N-PKLPFEDNSFDVITN 214 (220)
Q Consensus 180 eELa-aN~rL~~~~VqD---LN~-~-p~LPFeDnSFDaVtc 214 (220)
.|+. +...|+.|-+.+ ++. + -+|||++++||+++|
T Consensus 230 ~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 230 RMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred HHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 9999 588888875332 233 3 589999999999987
No 102
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.48 E-value=0.0033 Score=55.39 Aligned_cols=81 Identities=10% Similarity=0.152 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-C
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-P 200 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-p 200 (220)
+|...++.+-+.. .. .+|.+|||+|||++.. +.+.. .+|+|+|.++++++. +.++.+--++-++.+ .
T Consensus 26 ~~~~i~~~i~~~l----~~--~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~ 97 (272)
T PRK00274 26 IDENILDKIVDAA----GP--QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDAL 97 (272)
T ss_pred CCHHHHHHHHHhc----CC--CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhh
Confidence 4666666655543 21 2478999999996655 44432 489999999999994 544432111112222 2
Q ss_pred CCCCCCCCcceEEE
Q 027661 201 KLPFEDNSFDVITN 214 (220)
Q Consensus 201 ~LPFeDnSFDaVtc 214 (220)
++++++-.+|.|++
T Consensus 98 ~~~~~~~~~~~vv~ 111 (272)
T PRK00274 98 KVDLSELQPLKVVA 111 (272)
T ss_pred cCCHHHcCcceEEE
Confidence 44555433566654
No 103
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.39 E-value=0.0026 Score=52.47 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=40.4
Q ss_pred CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCCCC-CCCcceEEEeee
Q 027661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLPFE-DNSFDVITNVCK 217 (220)
Q Consensus 149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LPFe-DnSFDaVtcsvS 217 (220)
+.+|||||||.+ .++... ..+|+|+|.|+++++. +.++..... .-.+.+ .++|.+ +++||+|+|...
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 779999999943 334332 2469999999999874 443332111 101111 133443 489999998653
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.35 E-value=0.0022 Score=56.10 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcch----hhhccCCCCCCCCC-CCCCcceEEEe
Q 027661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTE----YVVQDLNLNPKLPF-EDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~----~~VqDLN~~p~LPF-eDnSFDaVtcs 215 (220)
+.+|||||||.+ .++.......+|+|+|.|++.++ ++..+.. +...|+-.. ++- ...+||.|++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~--l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDA--LPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhh--cchhcCCCEeEEEEC
Confidence 458999999954 33333333358999999999998 3433332 222333211 220 13579999873
No 105
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.32 E-value=0.0032 Score=57.45 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=50.0
Q ss_pred HHHHHhhCCCCCCCCC-eEeeeccchhhccCCCC--CCCcEEEecCCHHHHhh---CcCcchhhh-ccCCCCCCCCCC--
Q 027661 135 TKYYSEVFPPSNTPGV-SILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELKR---NPVLTEYVV-QDLNLNPKLPFE-- 205 (220)
Q Consensus 135 T~lY~~~lp~~~~pG~-~VLDLccSWvSHLP~~v--~~~~VVGLGmN~eELaa---N~rL~~~~V-qDLN~~p~LPFe-- 205 (220)
|+.|.....- ++|. .++|+|||-+ --+..+ -+.+|||.|.|++||+. .++.+...+ -..-.+.-.|+.
T Consensus 21 tdw~~~ia~~--~~~h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 21 TDWFKKIASR--TEGHRLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG 97 (261)
T ss_pred HHHHHHHHhh--CCCcceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence 5566666543 3455 8999999966 211111 14789999999999994 333333222 222222235565
Q ss_pred CCCcceEEEeeee
Q 027661 206 DNSFDVITNVCKT 218 (220)
Q Consensus 206 DnSFDaVtcsvSV 218 (220)
+||.|.|||+=.+
T Consensus 98 e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 98 EESVDLITAAQAV 110 (261)
T ss_pred CcceeeehhhhhH
Confidence 9999999997443
No 106
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.25 E-value=0.0045 Score=59.50 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=39.7
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh------hhccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY------VVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~------~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+.+|||||||.+.. +.......+|+|+|+|+++++ ++.++... ...|+.. ..+| .+++||.|+|.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e-~~l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD-TDMP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc-cccc-cCCCccEEEEC
Confidence 56999999996543 333233468999999999998 33333221 1122211 1222 24589999983
No 107
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.24 E-value=0.0096 Score=53.90 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=46.0
Q ss_pred CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch--------hhhccCCCCCCCCCCCCCcceEEEeee
Q 027661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
..||.++||.+.- ||. .+-.+|+++|=|+.|.+ +.++..+ +++.+...-++ ++|.|.|+|+|++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~--l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ--LADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc--cccCCeeeEEEEEE
Confidence 4689999998877 442 23369999999999987 3444433 23333333333 59999999999986
Q ss_pred e
Q 027661 218 T 218 (220)
Q Consensus 218 V 218 (220)
+
T Consensus 155 L 155 (252)
T KOG4300|consen 155 L 155 (252)
T ss_pred E
Confidence 4
No 108
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.21 E-value=0.0018 Score=53.98 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh------ccCCCCC------CCcEEEecCCHHHHh-hCcCcchhh
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS------HFPPGYK------QDRIVGMGMNEEELK-RNPVLTEYV 192 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS------HLP~~v~------~~~VVGLGmN~eELa-aN~rL~~~~ 192 (220)
|.+...++|-.+-. . ++|..|||-|||.+. ++-..+. ..+++|.|.+++.+. ++..+..+.
T Consensus 12 L~~~lA~~ll~la~--~----~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 12 LRPTLAAALLNLAG--W----RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp S-HHHHHHHHHHTT--------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhC--C----CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 45555555544321 1 258899999999333 3222221 234999999999998 466676654
Q ss_pred hc----cCCCC-CCCCCCCCCcceEEEe
Q 027661 193 VQ----DLNLN-PKLPFEDNSFDVITNV 215 (220)
Q Consensus 193 Vq----DLN~~-p~LPFeDnSFDaVtcs 215 (220)
+. -.+.+ .+||+.+++||+|+|-
T Consensus 86 ~~~~i~~~~~D~~~l~~~~~~~d~Ivtn 113 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPDGSVDAIVTN 113 (179)
T ss_dssp -CGGEEEEE--GGGGGGTTSBSCEEEEE
T ss_pred cCCceEEEecchhhcccccCCCCEEEEC
Confidence 42 22333 4788889999999983
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.16 E-value=0.0047 Score=51.04 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE 190 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~ 190 (220)
+|.+|||+|||.+.+ +....+.++|+|+|.|+++++. ++++.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 488999999996655 4332334799999999999983 554443
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0068 Score=56.13 Aligned_cols=96 Identities=21% Similarity=0.313 Sum_probs=59.0
Q ss_pred CcccCcCCCCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hC
Q 027661 112 PDSLFYETPRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RN 185 (220)
Q Consensus 112 dD~~FY~~PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN 185 (220)
.+-.|.+.|=.-.| ||.+ |++--+.||.. ++.+||||||||+- -+.+..+..+|+-.|.|..-++ ++
T Consensus 127 ~~~~~~t~pGVFS~~~lD~G-----S~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKG-----SRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred CceEEEeCCCCCcCCCcChH-----HHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH
Confidence 44455555544444 6766 45566777763 35599999999542 2444333469999999999888 35
Q ss_pred cCcchhhhccC---CCCCCCCCCCCCcceEEEe
Q 027661 186 PVLTEYVVQDL---NLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 186 ~rL~~~~VqDL---N~~p~LPFeDnSFDaVtcs 215 (220)
..+..-.+++. -.+.-.|-++ +||.|||-
T Consensus 200 ~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisN 231 (300)
T COG2813 200 KNLAANGVENTEVWASNLYEPVEG-KFDLIISN 231 (300)
T ss_pred HhHHHcCCCccEEEEecccccccc-cccEEEeC
Confidence 55554333321 1112334555 99999983
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.07 E-value=0.0065 Score=54.71 Aligned_cols=65 Identities=29% Similarity=0.349 Sum_probs=44.4
Q ss_pred CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHh---hCcCcchh------hhccCCCC-CCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELK---RNPVLTEY------VVQDLNLN-PKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELa---aN~rL~~~------~VqDLN~~-p~LPFeDnSFDaVtcs 215 (220)
..+|||||||- ..-+.......+|+|+++.+++-+ +|-+++.+ ..+|++.- ...++. +||.|||-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~--~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA--SFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc--ccCEEEeC
Confidence 67999999993 334666655579999999998766 26565543 22444443 234444 99999993
No 112
>PHA03412 putative methyltransferase; Provisional
Probab=96.06 E-value=0.0086 Score=53.88 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=38.8
Q ss_pred CCeEeeeccchhhc-------cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+.+|||+|||.+.- ++.. +..+|+|+|+|+.+++. +..+.. +...|+.. .++ +.+||.||+-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~---~~~-~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIVPEATWINADALT---TEF-DTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc---ccc-cCCccEEEEC
Confidence 56999999994322 2211 12589999999999993 333322 22234322 233 5799999973
No 113
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.85 E-value=0.01 Score=51.83 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN- 199 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~- 199 (220)
+|...++.+.+... +. +|..|||+|||.+.. +.+. ..+|+|+|+++++++. +.++.+. -+.-++.+
T Consensus 13 ~d~~~~~~iv~~~~--~~----~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~ 84 (258)
T PRK14896 13 IDDRVVDRIVEYAE--DT----DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA 84 (258)
T ss_pred CCHHHHHHHHHhcC--CC----CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc
Confidence 68888888876542 22 478999999996654 4433 3589999999999984 4444321 01111222
Q ss_pred CCCCCCCCCcceEEEe
Q 027661 200 PKLPFEDNSFDVITNV 215 (220)
Q Consensus 200 p~LPFeDnSFDaVtcs 215 (220)
.+++++ +||.|++.
T Consensus 85 ~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 85 LKVDLP--EFNKVVSN 98 (258)
T ss_pred ccCCch--hceEEEEc
Confidence 244554 47887764
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.83 E-value=0.0048 Score=58.68 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=45.9
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCC-C--CCCCCCCcceEEEeeee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNP-K--LPFEDNSFDVITNVCKT 218 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p-~--LPFeDnSFDaVtcsvSV 218 (220)
+..+||||||.+.+ +........++|+|+++++++. ..+....- +.-++.+. . -+|++++||.|.+.+..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 66999999996655 5554444799999999999873 33332211 11112221 1 26889999999987753
No 115
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.83 E-value=0.005 Score=56.32 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=46.9
Q ss_pred CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHh-hCcCcchh-hhccCCCCC-----CCCCCCCCcceEEEee
Q 027661 148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELK-RNPVLTEY-VVQDLNLNP-----KLPFEDNSFDVITNVC 216 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELa-aN~rL~~~-~VqDLN~~p-----~LPFeDnSFDaVtcsv 216 (220)
||..+||.+||.+.| +-+.++ .++|+|+|.++++++ ++.+|.+. -+.-++.+. .++-.-.+||+|++-.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 688999999999888 444443 379999999999999 47777540 011111111 1221112899999877
Q ss_pred ee
Q 027661 217 KT 218 (220)
Q Consensus 217 SV 218 (220)
||
T Consensus 99 Gv 100 (296)
T PRK00050 99 GV 100 (296)
T ss_pred Cc
Confidence 75
No 116
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.78 E-value=0.0084 Score=55.97 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=42.8
Q ss_pred CCCeEeeeccchhhcc--CCCCCCCcEEEecCCHHHHhhCcCcchhhh-----ccCCC-CCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVLTEYVV-----QDLNL-NPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSHL--P~~v~~~~VVGLGmN~eELaaN~rL~~~~V-----qDLN~-~p~LPFeDnSFDaVtcs 215 (220)
.|.+|||||||-+-|+ -..-+...|+|+|=+.-=+.+=.-+.++.- .-+.. .-.||. .++||.|+|-
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~M 189 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSM 189 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEe
Confidence 3889999999988772 112255789999988766654333333221 12211 126677 7899999984
No 117
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.0096 Score=51.63 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh--hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-
Q 027661 124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV--SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN- 199 (220)
Q Consensus 124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv--SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~- 199 (220)
.||-......+-+-|... +|.+++|||||-+ |--..-.+...|+|+|+.++-|+- |....++-+|+ |.-
T Consensus 30 p~iAasM~~~Ih~Tygdi------Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi-dlLq 102 (185)
T KOG3420|consen 30 PHIAASMLYTIHNTYGDI------EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI-DLLQ 102 (185)
T ss_pred HHHHHHHHHHHHhhhccc------cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh-heee
Confidence 456555566666666553 3889999999932 211112234689999999999994 88888887765 332
Q ss_pred ---CCCCCCCCCcceEEE
Q 027661 200 ---PKLPFEDNSFDVITN 214 (220)
Q Consensus 200 ---p~LPFeDnSFDaVtc 214 (220)
.++-+....||.+++
T Consensus 103 cdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 103 CDILDLELKGGIFDTAVI 120 (185)
T ss_pred eeccchhccCCeEeeEEe
Confidence 356666688888776
No 118
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.63 E-value=0.022 Score=52.63 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh----hCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-h------CcCcchhh--h
Q 027661 130 AIAALTKYYSE----VFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-R------NPVLTEYV--V 193 (220)
Q Consensus 130 ai~~LT~lY~~----~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-a------N~rL~~~~--V 193 (220)
.|..|.++..+ .+|. .++.+|||||||.+ .-|.......+++|.|++++.++ + ||.|...+ .
T Consensus 94 Yi~~l~dll~~~~~~~~p~--~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 94 YIHHLADLLAEDNGGVIPR--GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred HHHHHHHHhcccccccCCC--CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence 34455555433 3443 24689999999953 11222222358999999999887 2 44444321 1
Q ss_pred -ccCCCCC--CCCCCCCCcceEEEe
Q 027661 194 -QDLNLNP--KLPFEDNSFDVITNV 215 (220)
Q Consensus 194 -qDLN~~p--~LPFeDnSFDaVtcs 215 (220)
+...... .+-.+++.||.|+|-
T Consensus 172 ~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 172 LQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EccchhhhhhcccccCCceEEEEeC
Confidence 1111111 112357799999983
No 119
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.60 E-value=0.025 Score=53.67 Aligned_cols=97 Identities=14% Similarity=0.257 Sum_probs=65.5
Q ss_pred CcCCCCccCCCCHHHHHH--HHHHHHhhCCCC-----CCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCH--HHHh
Q 027661 116 FYETPRFVTHIDDPAIAA--LTKYYSEVFPPS-----NTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNE--EELK 183 (220)
Q Consensus 116 FY~~PRfVtHIDd~ai~~--LT~lY~~~lp~~-----~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~--eELa 183 (220)
+--.|||.--=|...++. |.+.+....++. -.+|+.+|||||| |.-.|-+. ..+|+++|-++ +.|.
T Consensus 172 ~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~ 249 (357)
T PRK11760 172 PMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM 249 (357)
T ss_pred CCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh
Confidence 335788877777666665 457777776541 1479999999998 77776553 34999999554 2234
Q ss_pred hCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 184 RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 184 aN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
.+++.+.+-..++...|. ...||.++|=+..
T Consensus 250 ~~~~V~h~~~d~fr~~p~----~~~vDwvVcDmve 280 (357)
T PRK11760 250 DTGQVEHLRADGFKFRPP----RKNVDWLVCDMVE 280 (357)
T ss_pred CCCCEEEEeccCcccCCC----CCCCCEEEEeccc
Confidence 577776655555554442 5789999997653
No 120
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.55 E-value=0.019 Score=38.29 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=40.6
Q ss_pred Eeeeccchhh--ccCCCCCC-CcEEEecCCHHHHhh-CcCcc-hhh--hccCCCC--C-CCCCCC-CCcceEEEeee
Q 027661 152 ILDLCSSWVS--HFPPGYKQ-DRIVGMGMNEEELKR-NPVLT-EYV--VQDLNLN--P-KLPFED-NSFDVITNVCK 217 (220)
Q Consensus 152 VLDLccSWvS--HLP~~v~~-~~VVGLGmN~eELaa-N~rL~-~~~--VqDLN~~--p-~LPFeD-nSFDaVtcsvS 217 (220)
+||++||-+. ++...... ..++|+|++..++.. +.... ... +.-...+ . .+||++ ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999776 55554333 389999999999985 21110 100 1111111 1 489998 599999 5544
No 121
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.48 E-value=0.0062 Score=52.70 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEeeeccc--hh----hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCC---C
Q 027661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSS--WV----SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLN---L 198 (220)
Q Consensus 129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccS--Wv----SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN---~ 198 (220)
...+++.++.. + +||++|||++|| +. +||-.. .++|++++.+++-.+ ++.+|......++. .
T Consensus 59 ~~~a~~l~~L~--l----~pg~~VLeIGtGsGY~aAlla~lvg~--~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 59 SMVARMLEALD--L----KPGDRVLEIGTGSGYQAALLAHLVGP--VGRVVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp HHHHHHHHHTT--C-----TT-EEEEES-TTSHHHHHHHHHHST--TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred HHHHHHHHHHh--c----CCCCEEEEecCCCcHHHHHHHHhcCc--cceEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 35555555544 4 369999999997 33 344322 268999999998887 48888765433221 1
Q ss_pred CCCCCC-CCCCcceEEEeeeec
Q 027661 199 NPKLPF-EDNSFDVITNVCKTH 219 (220)
Q Consensus 199 ~p~LPF-eDnSFDaVtcsvSVd 219 (220)
+-...+ +...||+|+++.++.
T Consensus 131 dg~~g~~~~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAVP 152 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBBS
T ss_pred chhhccccCCCcCEEEEeeccc
Confidence 222223 346899999998875
No 122
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.19 E-value=0.014 Score=52.78 Aligned_cols=68 Identities=9% Similarity=0.168 Sum_probs=49.1
Q ss_pred ccCcCCCCccCCC--CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcC
Q 027661 114 SLFYETPRFVTHI--DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPV 187 (220)
Q Consensus 114 ~~FY~~PRfVtHI--Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~r 187 (220)
..+....++..|. |+..++.+.+... + .+|..|||+|||++.. +.+. ..+|+|+|+++++++. +.+
T Consensus 6 ~~~~~kk~~GQnFL~d~~i~~~Iv~~~~--~----~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~ 77 (294)
T PTZ00338 6 SGMVFNKKFGQHILKNPLVLDKIVEKAA--I----KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKR 77 (294)
T ss_pred CCcCcCCCCCccccCCHHHHHHHHHhcC--C----CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHH
Confidence 3455677788886 9999988877542 2 2488999999996655 4332 2589999999999984 554
Q ss_pred cc
Q 027661 188 LT 189 (220)
Q Consensus 188 L~ 189 (220)
+.
T Consensus 78 ~~ 79 (294)
T PTZ00338 78 FQ 79 (294)
T ss_pred HH
Confidence 43
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.011 Score=52.96 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=36.2
Q ss_pred eEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCCCCCCCCCCcceEEE
Q 027661 151 SILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 151 ~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p~LPFeDnSFDaVtc 214 (220)
+|||||||.+ .-+.......+|+|.|+|++-|+ ++......-+.+ +..+.--+... .||.++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~-~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG-KFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC-ceeEEEe
Confidence 7999999932 23444333369999999999998 333333322111 11111112222 7998887
No 124
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.95 E-value=0.024 Score=50.04 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=38.4
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--------hccCCCCCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--------VQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--------VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
++.+|||+|||++.. +.+.....+|+|+|+ +++++. ++++.+.- ..|+- +.++++ +|+|+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~---~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY---KESYPE--ADAVLFC 222 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCcc---CCCCCC--CCEEEeE
Confidence 478999999996554 333333368999998 677763 44433321 12221 234543 6998876
Q ss_pred e
Q 027661 216 C 216 (220)
Q Consensus 216 v 216 (220)
.
T Consensus 223 ~ 223 (306)
T TIGR02716 223 R 223 (306)
T ss_pred h
Confidence 5
No 125
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.92 E-value=0.037 Score=37.29 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=38.3
Q ss_pred eEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCc-C--cch-----hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNP-V--LTE-----YVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 151 ~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~-r--L~~-----~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
+|||+|||.+.. +.+ ....+++|.|.|++.+.... . ... +...|... ..+....+||.|+|....
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE--LPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh--hccccCCceEEEEEccce
Confidence 489999995554 222 23479999999998877422 1 111 11112111 112356789999987643
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=94.84 E-value=0.041 Score=50.64 Aligned_cols=68 Identities=4% Similarity=0.031 Sum_probs=39.5
Q ss_pred CCeEeeeccchh----hccCCC-CCCCcEEEecCCHHHHh-hCcCc------chhhh-ccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSSWV----SHFPPG-YKQDRIVGMGMNEEELK-RNPVL------TEYVV-QDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccSWv----SHLP~~-v~~~~VVGLGmN~eELa-aN~rL------~~~~V-qDLN~~p~LPFeDnSFDaVtcs 215 (220)
..+|||+|||-. .-+... ...++++|+|.|++..+ ++..+ .+.+. ...|.. +++-....||+|+|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~-~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM-DVTESLKEYDVVFLA 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh-hcccccCCcCEEEEe
Confidence 579999999933 212211 12259999999999987 34333 12111 112221 222235789999998
Q ss_pred ee
Q 027661 216 CK 217 (220)
Q Consensus 216 vS 217 (220)
+-
T Consensus 203 AL 204 (296)
T PLN03075 203 AL 204 (296)
T ss_pred cc
Confidence 53
No 127
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.84 E-value=0.016 Score=56.06 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=47.3
Q ss_pred CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhc---cCCCCC-CC-CCCCCCcceEEE
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLNP-KL-PFEDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~p-~L-PFeDnSFDaVtc 214 (220)
+||.+|||+||+ =..|+.+-+.. +.|+..|.++.-++. ..++..+-+. -.|.++ .+ +.....||.|++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 479999999998 55676665543 799999999999885 6666665433 244443 22 133467999993
No 128
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=94.61 E-value=0.057 Score=46.54 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa 184 (220)
|.+|||++||.+. +|.+ ..-+|+|+|+|+..++.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHH
Confidence 7799999999554 4655 23489999999998883
No 129
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=94.51 E-value=0.019 Score=49.67 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=39.3
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh------CcCcch-hhhccCCCCCCCCCCCCCcceEEEee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR------NPVLTE-YVVQDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa------N~rL~~-~~VqDLN~~p~LPFeDnSFDaVtcsv 216 (220)
+.++|||+||.+++ |... .-.|+++|.|+.-|+. ...|+= ..+.|+|.- .++ ..||+|++++
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~---~~~-~~yD~I~st~ 102 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF---DFP-EEYDFIVSTV 102 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB---S-T-TTEEEEEEES
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc---ccc-CCcCEEEEEE
Confidence 45999999998888 4441 2389999999988773 233331 234566653 343 6799998764
No 130
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.40 E-value=0.065 Score=47.95 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=29.4
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
+..|-|+|||... -++..+ +|.-.|+-+ .|+..+. -|+ .++|++|+|.|+|+||.|.
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~---~V~SfDLva----~n~~Vta---cdi---a~vPL~~~svDv~VfcLSL 132 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKH---KVHSFDLVA----PNPRVTA---CDI---ANVPLEDESVDVAVFCLSL 132 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S------EEEEESS-----SSTTEEE---S-T---TS-S--TT-EEEEEEES--
T ss_pred CEEEEECCCchHHHHHhcccCc---eEEEeeccC----CCCCEEE---ecC---ccCcCCCCceeEEEEEhhh
Confidence 6789999999332 245443 678787765 3554433 222 5789999999999999874
No 131
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.31 E-value=0.036 Score=47.57 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCC
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN 199 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~ 199 (220)
|..+++|-+.+....+ |.+||||+||.++- +.. ...+|+|++.|++-++. +..+...-. .-++.+
T Consensus 38 d~v~e~l~~~l~~~~~-----~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 38 DRVRETLFNWLAPVIV-----DARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN 110 (199)
T ss_pred HHHHHHHHHHHhhhcC-----CCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch
Confidence 4455556555554332 67999999994332 222 23699999999998772 333322111 111111
Q ss_pred --CCCCCCCCCcceEEE
Q 027661 200 --PKLPFEDNSFDVITN 214 (220)
Q Consensus 200 --p~LPFeDnSFDaVtc 214 (220)
..++..+.+||+|++
T Consensus 111 ~~~~l~~~~~~fDlV~~ 127 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFV 127 (199)
T ss_pred HHHHHhhcCCCceEEEE
Confidence 112323567999986
No 132
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=93.98 E-value=0.054 Score=50.07 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=41.2
Q ss_pred CcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661 116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 116 FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa 183 (220)
|.-.|.--.-..+...++|-+.-.+.+.. .++.+||||+||.+.. +.. ...+|+|+|+|++.++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~--~~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~ 269 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVRE--IPVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIA 269 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHh--cCCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHH
Confidence 33334433455666677765544444421 1367999999996654 443 2368999999999998
No 133
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.68 E-value=0.035 Score=52.36 Aligned_cols=66 Identities=18% Similarity=0.116 Sum_probs=38.9
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh---CcCcchhh---hccCCCCC-----CCCCCCCCcceEEE
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR---NPVLTEYV---VQDLNLNP-----KLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa---N~rL~~~~---VqDLN~~p-----~LPFeDnSFDaVtc 214 (220)
|.+|||||||.+. +.... +..+|+++|+|+..++. |-+++..- +.-++.+. ++.-++.+||.|+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 7799999999443 32211 23599999999999982 43333210 11111121 22224668999997
Q ss_pred e
Q 027661 215 V 215 (220)
Q Consensus 215 s 215 (220)
-
T Consensus 300 D 300 (396)
T PRK15128 300 D 300 (396)
T ss_pred C
Confidence 3
No 134
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.60 E-value=0.067 Score=49.52 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhh---CcCcchhhhccCCCC---CCCCCCC-CCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKR---NPVLTEYVVQDLNLN---PKLPFED-NSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaa---N~rL~~~~VqDLN~~---p~LPFeD-nSFDaVtcs 215 (220)
+|.+|||+|||.+.= -...++-.+|+|.|+.+.-+.+ |-+++. |..++.. -.+.... ..||+|+|-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~--v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG--VELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC--CchhhhcccccchhhcccCcccEEEeh
Confidence 389999999994432 2223566799999999998883 555544 2221111 1222333 599999874
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.27 E-value=0.14 Score=44.28 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=26.1
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa 183 (220)
|.+|||++||.+.. |.+ ..-+|+|+|+|+.-++
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~ 73 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVE 73 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHH
Confidence 77999999995544 554 2348999999999887
No 136
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.14 E-value=0.066 Score=52.86 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=53.0
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCC--CeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhhCcCcc-
Q 027661 117 YETPRFVTHIDDPAIAALTKYYSEVFPPSNTPG--VSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKRNPVLT- 189 (220)
Q Consensus 117 Y~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG--~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaaN~rL~- 189 (220)
..-|-=.||.-.+|-+.+.+ ..+.+|.....| -.+||++||.+|. ++.+| .++.+-+|.+-= .+-++.
T Consensus 85 ~~FPgggt~F~~Ga~~Yid~-i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~-~qvqfal 159 (506)
T PF03141_consen 85 FRFPGGGTMFPHGADHYIDQ-IAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV---TTMSFAPNDEHE-AQVQFAL 159 (506)
T ss_pred EEeCCCCccccCCHHHHHHH-HHHHhhccccCCceEEEEeccceeehhHHHHhhCCc---eEEEcccccCCc-hhhhhhh
Confidence 34455667777777776653 566776521113 2689999995554 45555 444444441110 111111
Q ss_pred hh-hhccCCC--CCCCCCCCCCcceEEEe
Q 027661 190 EY-VVQDLNL--NPKLPFEDNSFDVITNV 215 (220)
Q Consensus 190 ~~-~VqDLN~--~p~LPFeDnSFDaVtcs 215 (220)
+. +..-+.. ..+|||+|++||.|=|+
T Consensus 160 eRGvpa~~~~~~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 160 ERGVPAMIGVLGSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred hcCcchhhhhhccccccCCccchhhhhcc
Confidence 11 1122222 46999999999999886
No 137
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.05 E-value=0.041 Score=44.68 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.2
Q ss_pred CCeEeeeccc---hhhccCCCC-CCCcEEEecCCHH
Q 027661 149 GVSILDLCSS---WVSHFPPGY-KQDRIVGMGMNEE 180 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v-~~~~VVGLGmN~e 180 (220)
+..||||||+ |...+-+.. ..++|+|+|++..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 5899999999 777766654 3489999999987
No 138
>PRK04148 hypothetical protein; Provisional
Probab=93.00 E-value=0.052 Score=44.88 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCCCCCCeEeeeccchhhccCCCCC--CCcEEEecCCHHHHhh-CcCcchhhhccCC
Q 027661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYK--QDRIVGMGMNEEELKR-NPVLTEYVVQDLN 197 (220)
Q Consensus 134 LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v~--~~~VVGLGmN~eELaa-N~rL~~~~VqDLN 197 (220)
+.++-.+.++.. .|.+|||+|||-+.++...+. .-+|+|+|.|++-.+. .+.-.+..+.|+-
T Consensus 4 i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf 68 (134)
T PRK04148 4 IAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLF 68 (134)
T ss_pred HHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCC
Confidence 445555555542 368999999996654333221 2599999999998773 4444455555554
No 139
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.94 E-value=0.1 Score=48.32 Aligned_cols=73 Identities=27% Similarity=0.442 Sum_probs=50.8
Q ss_pred hhCCCCCCCCCeEeeeccc---hhhccCCCCCC--CcEEEecCCHHHHhh-CcCcchhhhcc---CCCC----CCCCCCC
Q 027661 140 EVFPPSNTPGVSILDLCSS---WVSHFPPGYKQ--DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN----PKLPFED 206 (220)
Q Consensus 140 ~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~--~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~----p~LPFeD 206 (220)
..+-+ +||.+|||+|++ =+.|+.+-... ..|+.+|.++.=|+. +.+++..-+.+ .|.+ +......
T Consensus 150 ~~L~p--~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 150 LVLDP--KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHcCC--CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence 45554 589999999998 56777665543 457999999999995 77777765553 3322 2333444
Q ss_pred CCcceEEE
Q 027661 207 NSFDVITN 214 (220)
Q Consensus 207 nSFDaVtc 214 (220)
..||.|++
T Consensus 228 ~~fD~iLl 235 (355)
T COG0144 228 EKFDRILL 235 (355)
T ss_pred CcCcEEEE
Confidence 47999986
No 140
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.93 E-value=0.17 Score=45.97 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCCCCCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHhh-CcCcc
Q 027661 134 LTKYYSEVFPPSNTPGVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLT 189 (220)
Q Consensus 134 LT~lY~~~lp~~~~pG~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~ 189 (220)
|.+.|.+.+..-+ +-.+||||+|| |. |.+++. .++|.|+|..+++. |.-++
T Consensus 92 Ld~fY~~if~~~~-~p~sVlDigCGlNPlalp~~-~~~~~a---~Y~a~DID~~~ve~l~~~l~ 150 (251)
T PF07091_consen 92 LDEFYDEIFGRIP-PPDSVLDIGCGLNPLALPWM-PEAPGA---TYIAYDIDSQLVEFLNAFLA 150 (251)
T ss_dssp HHHHHHHHCCCS----SEEEEET-TTCHHHHHTT-TSSTT----EEEEEESBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCchhhhhhccCCceehhhc-ccCCCc---EEEEEeCCHHHHHHHHHHHH
Confidence 6788998876422 24699999999 44 555554 89999999999984 54443
No 141
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=92.64 E-value=0.14 Score=44.27 Aligned_cols=55 Identities=11% Similarity=0.200 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVL 188 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL 188 (220)
+|...++++.+... + .++.+|||+|||++.. +.+.. .+|+|+|.|+++++. +.++
T Consensus 13 ~d~~i~~~i~~~~~--~----~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 13 IDESVIQKIVEAAN--V----LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred CCHHHHHHHHHhcC--C----CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHh
Confidence 67777777766442 1 2478999999996654 44432 469999999999984 4444
No 142
>PLN02672 methionine S-methyltransferase
Probab=92.40 E-value=0.071 Score=56.66 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHh
Q 027661 149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELa 183 (220)
|.+|||||||. ...+.......+|+|+|+|++.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 56999999992 233444444469999999999997
No 143
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.37 E-value=0.06 Score=49.86 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=46.6
Q ss_pred eEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhhCcCc------chhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 151 SILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 151 ~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaaN~rL------~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
.++||+|| ..+||-.+ +-++++-.|++..|++.-..- ..++|.| .-.|||.+||||.+|.+.|.
T Consensus 75 ~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~D---EE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGD---EEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred ceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCCCceEEEEEecc---hhcccccccchhhhhhhhhh
Confidence 69999999 66786443 237999999999999952222 2233332 34789999999999988764
No 144
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.07 E-value=0.093 Score=52.59 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=38.7
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---CcCcchh-------hhccCCCCCCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NPVLTEY-------VVQDLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtc 214 (220)
|.+||||||| ...++... +-.+|+++|+|++.++. |-+++.. +..|...- |.-..++||.|+|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~--l~~~~~~fDlIil 614 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW--LKEAREQFDLIFI 614 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--HHHcCCCcCEEEE
Confidence 7799999999 34444432 33579999999999982 4433321 11222111 1101568999998
No 145
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.01 E-value=0.086 Score=48.23 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhh---CcCcchhhhccCCCCCCCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKR---NPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaa---N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
+|.+|||+|||.+.= ....++-++|+|.|+++.-... |-+++..-. ++.......+....||.|+.-
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLVEGKFDLVVAN 232 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTCCS-EEEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccccccCCEEEEC
Confidence 488999999994332 2222455799999999987762 655554211 111111122334899999863
No 146
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.00 E-value=0.18 Score=40.08 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCCCeEeeeccc------hhhc-cCCCCCCCcEEEecCCHHHHhh
Q 027661 147 TPGVSILDLCSS------WVSH-FPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 147 ~pG~~VLDLccS------WvSH-LP~~v~~~~VVGLGmN~eELaa 184 (220)
++...|+|+||| ..+| |+..-..-+|+|+|.|++.+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 457899999999 2233 2222123599999999988774
No 147
>PRK00811 spermidine synthase; Provisional
Probab=91.81 E-value=0.23 Score=44.27 Aligned_cols=67 Identities=18% Similarity=0.082 Sum_probs=40.1
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccC-----CCCC--CCCCCCCCcceEEE
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDL-----NLNP--KLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDL-----N~~p--~LPFeDnSFDaVtc 214 (220)
..+|||||||.+.- +-..-...+|++++++++.++. +..+.+.- .+|- +.+. -++..+++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 56999999995433 2221123689999999999984 44443210 0111 1111 12335789999998
Q ss_pred e
Q 027661 215 V 215 (220)
Q Consensus 215 s 215 (220)
-
T Consensus 157 D 157 (283)
T PRK00811 157 D 157 (283)
T ss_pred C
Confidence 4
No 148
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=90.33 E-value=0.77 Score=40.96 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=40.5
Q ss_pred CCeEeeeccc-----hhhc--cCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCC-------CCCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSS-----WVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNL-------NPKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccS-----WvSH--LP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~-------~p~LPFeDnSFDaVtc 214 (220)
-.+|||+||| |..+ ++ .+ .+++.+|-|+++++.-..|.+......+. ...+++... |.||+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~-~~--~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~ 108 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWP-SL--KEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIA 108 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhc-Cc--eeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEE
Confidence 3589999999 6544 66 33 58999999999998533343322111111 112444333 99999
Q ss_pred eeee
Q 027661 215 VCKT 218 (220)
Q Consensus 215 svSV 218 (220)
+++.
T Consensus 109 s~~L 112 (274)
T PF09243_consen 109 SYVL 112 (274)
T ss_pred ehhh
Confidence 8764
No 149
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=90.04 E-value=0.43 Score=41.47 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC---
Q 027661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN--- 199 (220)
Q Consensus 132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~--- 199 (220)
.++-....+..+ +.+|||+|||-+. .+...+. .++|+++|.|++.++ +++.+.+.-+.+ ++.+
T Consensus 57 g~~L~~l~~~~~-----~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVKIMN-----AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHhC-----CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 334444445544 4699999988442 2222222 369999999999888 466665543321 1111
Q ss_pred --CCCC--CCCCCcceEEEe
Q 027661 200 --PKLP--FEDNSFDVITNV 215 (220)
Q Consensus 200 --p~LP--FeDnSFDaVtcs 215 (220)
++|. .++.+||.|.+-
T Consensus 132 ~L~~l~~~~~~~~fD~VfiD 151 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVD 151 (234)
T ss_pred HHHHHHhCCCCCCCCEEEEC
Confidence 1121 225789999874
No 150
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=89.94 E-value=0.49 Score=44.43 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=37.9
Q ss_pred CCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 149 G~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV 218 (220)
...|-|+|||...---. ....|.-+|+- ++|++....- .-++|++|.|.|+++||.|.
T Consensus 181 ~~vIaD~GCGEakiA~~--~~~kV~SfDL~----a~~~~V~~cD------m~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS--ERHKVHSFDLV----AVNERVIACD------MRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred ceEEEecccchhhhhhc--cccceeeeeee----cCCCceeecc------ccCCcCccCcccEEEeeHhh
Confidence 45899999995543211 12467776652 2465554321 12589999999999999874
No 151
>PRK04457 spermidine synthase; Provisional
Probab=89.83 E-value=0.19 Score=44.50 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=25.2
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa 184 (220)
+.+|||||||-++ .+.......+|+++|+|++.++.
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~ 105 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV 105 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 5689999999332 12121222589999999999983
No 152
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=89.76 E-value=0.15 Score=45.11 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=39.4
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCCCCCCCCCcceEEEe
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPKLPFEDNSFDVITNV 215 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~LPFeDnSFDaVtcs 215 (220)
-.++||++|| -+.+|.+.. .+++++|+++.-|+. ..|+.+. .+.++ |. ..++.+||.|+|+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv---p~-~~P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADV---PE-FWPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T---TT----SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC---CC-CCCCCCeeEEEEe
Confidence 4689999999 556676643 699999999999994 7788764 12222 21 2578999999997
No 153
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.28 E-value=0.35 Score=42.28 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC----C-CCCCCCCCcceEEEeee
Q 027661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN----P-KLPFEDNSFDVITNVCK 217 (220)
Q Consensus 147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~----p-~LPFeDnSFDaVtcsvS 217 (220)
+||+.++|++||.+|= +.---..++|+.++=|++.+.. ......+-++++-.. | .|+=.+ +||++.++=|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg 111 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG 111 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC
Confidence 4799999999994443 2111122799999999999984 555555555554433 2 344222 7999998754
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=89.26 E-value=0.098 Score=45.35 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=36.1
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcchh--hhccCCCCC-CCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTEY--VVQDLNLNP-KLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~~--~VqDLN~~p-~LPFeDnSFDaVtcs 215 (220)
+|..|||++||.+.. +..--+..+|++.|+|++-.+ .|-+++.. .+.-+|.+. +++- ++.||.|++.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 589999999996655 222113368999999976544 35555532 223344543 2222 8899999875
No 155
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.11 E-value=0.4 Score=45.13 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcch-----hhhccCCCCCCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTE-----YVVQDLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~-----~~VqDLN~~p~LPFeDnSFDaVtc 214 (220)
+.+|||++||.+.- +..+.+..+|++.|.|++-++ .|-+++. ....|.|.-+. ..+.||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~---~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH---EERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh---hcCCCCEEEE
Confidence 46899999994432 333333458999999988776 2433332 12233332211 1456999875
No 156
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.09 E-value=0.29 Score=43.18 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhhC
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKRN 185 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaaN 185 (220)
+|+.|+||||.-+++ +.+.++. ++|+|+|+.+-++-.+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~ 86 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG 86 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC
Confidence 599999999985555 4444444 5799999999887766
No 157
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=88.84 E-value=0.46 Score=45.59 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHhh-CcCcchhhh---------ccCCCC-------CCCCCCCCC
Q 027661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKR-NPVLTEYVV---------QDLNLN-------PKLPFEDNS 208 (220)
Q Consensus 148 pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELaa-N~rL~~~~V---------qDLN~~-------p~LPFeDnS 208 (220)
+|..+|||+||=+--|-+ .-+-++.||.|+.+--+.+ ..|-.++.- .-+-.+ -.+|+.|.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 478999999993322211 1122789999998766552 444433211 111111 267899999
Q ss_pred cceEEEeeee
Q 027661 209 FDVITNVCKT 218 (220)
Q Consensus 209 FDaVtcsvSV 218 (220)
||+|-|-|+.
T Consensus 197 fDivScQF~~ 206 (389)
T KOG1975|consen 197 FDIVSCQFAF 206 (389)
T ss_pred cceeeeeeeE
Confidence 9999998874
No 158
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=87.85 E-value=0.71 Score=40.87 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh
Q 027661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 130 ai~~LT~lY~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa 184 (220)
.-..|.+++.+..++ +|.+||+.+||- ..+|.+. ++ +|+|+|+++.-++.
T Consensus 28 pnp~L~~~~~~l~~~---~~~rvLvPgCGkg~D~~~LA~~-G~-~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 28 PNEFLVKHFSKLNIN---DSSVCLIPMCGCSIDMLFFLSK-GV-KVIGIELSEKAVLS 80 (226)
T ss_pred CCHHHHHHHHhcCCC---CCCeEEEeCCCChHHHHHHHhC-CC-cEEEEecCHHHHHH
Confidence 345677777776543 478999999993 4456552 33 79999999999885
No 159
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=87.84 E-value=0.93 Score=41.87 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=41.8
Q ss_pred CcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh
Q 027661 116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 116 FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa 183 (220)
|+-.|.--..+....-+.|.+...+.+.. .+.+||||+||.+ ..|.+.. .+|+|+|.|+++++
T Consensus 168 ~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~---~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~ 233 (353)
T TIGR02143 168 YRQVENSFTQPNAAVNIKMLEWACEVTQG---SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVN 233 (353)
T ss_pred EEECCCCcccCCHHHHHHHHHHHHHHhhc---CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHH
Confidence 33333333344555566676666666642 1347999999954 3466544 58999999999998
No 160
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.71 E-value=0.17 Score=46.65 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=37.4
Q ss_pred CeEeeeccchhhccCCCCCC--CcEEEecCCHHHHhh--CcCcchhhh-ccCCCCCCCC-CCCCCcceEE
Q 027661 150 VSILDLCSSWVSHFPPGYKQ--DRIVGMGMNEEELKR--NPVLTEYVV-QDLNLNPKLP-FEDNSFDVIT 213 (220)
Q Consensus 150 ~~VLDLccSWvSHLP~~v~~--~~VVGLGmN~eELaa--N~rL~~~~V-qDLN~~p~LP-FeDnSFDaVt 213 (220)
.++|||+||.+.-=+. +.. .+.+|+|+|++||++ .+.+-+.++ -++-. -|+ ..++.||.|+
T Consensus 127 ~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~--Fl~~~~~er~DLi~ 193 (287)
T COG4976 127 RRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVL--FLEDLTQERFDLIV 193 (287)
T ss_pred ceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHH--HhhhccCCcccchh
Confidence 5899999996654211 111 588999999999994 444544322 22211 233 4556677665
No 161
>PRK03612 spermidine synthase; Provisional
Probab=87.03 E-value=0.85 Score=44.29 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHhh-C--cCcchhh---hcc-----CCCCC--CCCCCCCCcce
Q 027661 149 GVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELKR-N--PVLTEYV---VQD-----LNLNP--KLPFEDNSFDV 211 (220)
Q Consensus 149 G~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELaa-N--~rL~~~~---VqD-----LN~~p--~LPFeDnSFDa 211 (220)
..+|||||||-+ .++-+ .+. .+|+++|+|+++++. + +.+.+.- .+| .+.+. -+.-.+++||+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 569999999932 22222 122 599999999999994 3 3443321 111 11121 12234579999
Q ss_pred EEEee
Q 027661 212 ITNVC 216 (220)
Q Consensus 212 Vtcsv 216 (220)
|++..
T Consensus 377 Ii~D~ 381 (521)
T PRK03612 377 IIVDL 381 (521)
T ss_pred EEEeC
Confidence 99864
No 162
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=86.73 E-value=0.65 Score=43.03 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=48.3
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC-----CCCC-CCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN-----PKLP-FEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~-----p~LP-FeDnSFDaVtcs 215 (220)
||..++|.=+|.+.| +-+.++.++|+|+|.+++.++. ..+|.+|. +.-++.+ ..|. ...++||.|+.-
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEe
Confidence 588999999999888 3333434899999999999994 66776641 1111111 1121 245789999987
Q ss_pred eee
Q 027661 216 CKT 218 (220)
Q Consensus 216 vSV 218 (220)
.||
T Consensus 100 LGv 102 (305)
T TIGR00006 100 LGV 102 (305)
T ss_pred ccC
Confidence 776
No 163
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=86.69 E-value=1.2 Score=37.65 Aligned_cols=51 Identities=6% Similarity=-0.090 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa 183 (220)
|+..++++-+.-...+. |.+||||+||.++- +... +..+|+++|.|++-++
T Consensus 33 ~~~vrea~f~~l~~~~~-----g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~ 86 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQ-----GAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQ 86 (189)
T ss_pred hHHHHHHHHHHHHHhcC-----CCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHH
Confidence 66677777665555554 78999999995543 2221 2358999999998776
No 164
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.26 E-value=1.2 Score=39.63 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc-c-CCCCCCCcEEEecCCHHHHhh
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-F-PPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-L-P~~v~~~~VVGLGmN~eELaa 184 (220)
+-|..-|...|.+-.- .|..|||||||.++- + ..-++..+|+|+|...+.++.
T Consensus 29 ~~Aa~il~~a~~~g~l----~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei 83 (198)
T COG2263 29 PLAAYILWVAYLRGDL----EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEI 83 (198)
T ss_pred HHHHHHHHHHHHcCCc----CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHH
Confidence 3455556666633332 388899999996554 1 111455799999999999983
No 165
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=86.24 E-value=0.49 Score=43.27 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHh-hCcCcchhhh
Q 027661 119 TPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVV 193 (220)
Q Consensus 119 ~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~V 193 (220)
.+..+.=-|.+.|..-+ ... ||++|||-+.|.+ ..|...+++ |+|+..+.-++-++ +...|.++..
T Consensus 74 ~tQiIyPKD~~~I~~~~----gi~-----pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 74 RTQIIYPKDAGYIVARL----GIS-----PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred CCceecCCCHHHHHHHc----CCC-----CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc
Confidence 44455556877776532 223 5999999888733 336655666 99999999999999 5888887744
Q ss_pred cc----CCCCCCCCCCCCCcceEEE
Q 027661 194 QD----LNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 194 qD----LN~~p~LPFeDnSFDaVtc 214 (220)
.| .+.+..=....+.||+|+.
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred ccceEEEeccccccccccccCEEEE
Confidence 44 3344433444449999874
No 166
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.84 E-value=1.1 Score=45.02 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=59.8
Q ss_pred CCCCCcccCcCCCCccCC---CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh----------hccCCCCC------
Q 027661 108 FDESPDSLFYETPRFVTH---IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV----------SHFPPGYK------ 168 (220)
Q Consensus 108 ~DesdD~~FY~~PRfVtH---IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv----------SHLP~~v~------ 168 (220)
+|-+.+.++-.--|...| |-+...+++-.+ .-.+ ++|..++|-|||.+ .+.|+.+.
T Consensus 152 ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~--a~w~---~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f 226 (702)
T PRK11783 152 LDLSGESLHQRGYRQATGEAPLKENLAAAILLR--SGWP---QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGF 226 (702)
T ss_pred EECCCCchhhccCccCCCCCCCcHHHHHHHHHH--cCCC---CCCCeEEccCCCccHHHHHHHHHHhcCCCCcccccccc
Confidence 556777777666666555 555555555432 1111 24789999999932 22343221
Q ss_pred -----------------------------CCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC-CCC--CCCCCCcce
Q 027661 169 -----------------------------QDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN-PKL--PFEDNSFDV 211 (220)
Q Consensus 169 -----------------------------~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~-p~L--PFeDnSFDa 211 (220)
..+++|.|+|++.+. ++..+...-+.+ .+.+ .++ |+++++||+
T Consensus 227 ~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~ 306 (702)
T PRK11783 227 SGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGL 306 (702)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCE
Confidence 136999999999999 344444332211 1222 133 445578999
Q ss_pred EEEe
Q 027661 212 ITNV 215 (220)
Q Consensus 212 Vtcs 215 (220)
|+|-
T Consensus 307 IvtN 310 (702)
T PRK11783 307 VISN 310 (702)
T ss_pred EEEC
Confidence 8873
No 167
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=0.49 Score=41.94 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccC---CCCCCCCC-CCCCcceEEEeeee
Q 027661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDL---NLNPKLPF-EDNSFDVITNVCKT 218 (220)
Q Consensus 147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDL---N~~p~LPF-eDnSFDaVtcsvSV 218 (220)
+||++||+++||.+=+ |.+-+ ++|+.++..++=.+ +..+|...-..|+ ..+-..=+ +...||+|+++.++
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 4699999999994433 33323 39999999987666 4666766433332 12222223 33779999999886
Q ss_pred c
Q 027661 219 H 219 (220)
Q Consensus 219 d 219 (220)
+
T Consensus 149 ~ 149 (209)
T COG2518 149 P 149 (209)
T ss_pred C
Confidence 4
No 168
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=85.39 E-value=1.5 Score=40.53 Aligned_cols=56 Identities=7% Similarity=0.135 Sum_probs=40.9
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh
Q 027661 123 VTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 123 VtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa 183 (220)
-..+.....+.|-+...+.+.. .+.+||||+||.+ ..+.... .+|+|+|.|+++++
T Consensus 184 F~Q~N~~~~e~l~~~v~~~~~~---~~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~ 242 (362)
T PRK05031 184 FTQPNAAVNEKMLEWALDATKG---SKGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVA 242 (362)
T ss_pred eeccCHHHHHHHHHHHHHHhhc---CCCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHH
Confidence 3455667777887777777743 1357999999955 3455543 58999999999997
No 169
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=85.30 E-value=2.6 Score=38.93 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEeeeccchhhcc-C--CCCCC--CcEEEecCCHHHHhh---CcCcch----hhhccCCC
Q 027661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-P--PGYKQ--DRIVGMGMNEEELKR---NPVLTE----YVVQDLNL 198 (220)
Q Consensus 131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHL-P--~~v~~--~~VVGLGmN~eELaa---N~rL~~----~~VqDLN~ 198 (220)
+.-|.+-+-++++-..++-.+||.+|||-+.-. | +..+. -.|.+-|+++..+.. |..-++ .+|.||..
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTS 133 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccc
Confidence 567788888888875433238999999965541 1 11111 689999999998882 555554 36677776
Q ss_pred CC-CCCCCCCCcceEEEeee
Q 027661 199 NP-KLPFEDNSFDVITNVCK 217 (220)
Q Consensus 199 ~p-~LPFeDnSFDaVtcsvS 217 (220)
+- .-|.+-+|+|.+|+-|-
T Consensus 134 ~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 134 PSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hhccCCCCcCccceEEEEEE
Confidence 64 66899999999999874
No 170
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=84.68 E-value=0.96 Score=39.81 Aligned_cols=36 Identities=6% Similarity=-0.014 Sum_probs=25.1
Q ss_pred CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh
Q 027661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa 184 (220)
..+||+|+||.+. ++-......+|+++|.+++.++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~ 111 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIEL 111 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHH
Confidence 3499999999442 22221123689999999998884
No 171
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=84.68 E-value=0.34 Score=41.20 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=40.8
Q ss_pred CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc-----CCCCCCC--CCCCCCcceEEEee
Q 027661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD-----LNLNPKL--PFEDNSFDVITNVC 216 (220)
Q Consensus 150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD-----LN~~p~L--PFeDnSFDaVtcsv 216 (220)
..+||||||.+.| ++.......++|+++...-+.. ..+....-..+ .|...-| =++++|+|.|.+-|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 3899999996666 3333333589999999998883 55554432222 1222212 25789999998765
No 172
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.65 E-value=2.8 Score=40.40 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=61.8
Q ss_pred cccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---Cc
Q 027661 113 DSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NP 186 (220)
Q Consensus 113 D~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~ 186 (220)
|..|-=.||--+-.-....+.|.+.=.+.+.. .++.+||||-|| -..+|.+.+ .+|+|++++++..++ |-
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~--~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA 335 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLEL--AGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENA 335 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhh--cCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHH
Confidence 33333455555556777888887777777765 357899999999 455677544 699999999998872 33
Q ss_pred Ccc----hhhh-ccCCCCCCCCCCCCCcceEEE
Q 027661 187 VLT----EYVV-QDLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 187 rL~----~~~V-qDLN~~p~LPFeDnSFDaVtc 214 (220)
+.+ .+++ .+...-..-..+...||+|+.
T Consensus 336 ~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 336 AANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred HHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 332 2222 222211111226678888874
No 173
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=84.43 E-value=0.52 Score=41.48 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCCeEeeeccchhhccCCC----------CCCCcEEEecCCHHHHh
Q 027661 147 TPGVSILDLCSSWVSHFPPG----------YKQDRIVGMGMNEEELK 183 (220)
Q Consensus 147 ~pG~~VLDLccSWvSHLP~~----------v~~~~VVGLGmN~eELa 183 (220)
+++.+|||-|||.+.-|-.- ....+++|.|+++....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~ 91 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA 91 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence 35789999999966653221 13358999999999876
No 174
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=82.87 E-value=0.65 Score=42.54 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcc
Q 027661 148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLT 189 (220)
Q Consensus 148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~ 189 (220)
+-.+|.|||||-+ --|........|+|+|=+.+||++ ..+|-
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp 75 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP 75 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC
Confidence 3468999999943 335555555789999999999994 55554
No 175
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=82.20 E-value=0.7 Score=45.39 Aligned_cols=66 Identities=32% Similarity=0.508 Sum_probs=45.3
Q ss_pred CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCC---CCCCCcceEE
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLP---FEDNSFDVIT 213 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LP---FeDnSFDaVt 213 (220)
+||-+|||||+- -++|++.-++. |.|+..|.|++-++. ...+...-+.+ .|.+ .++| |.. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 689999999996 77887766554 999999999999884 43343332211 1222 1333 666 999987
No 176
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.95 E-value=0.67 Score=41.62 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=45.5
Q ss_pred CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc---cCCCCCCC--C-CCCCCcceEEE
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLNPKL--P-FEDNSFDVITN 214 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~p~L--P-FeDnSFDaVtc 214 (220)
.||..|||+|++ =..|+.+-+. .++|+..|.+.+-+.. .+++...-+. -++.+... | .....||.|++
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 479999999999 3457777665 5899999999999985 6666554322 22222211 1 22336999986
No 177
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=81.89 E-value=0.78 Score=37.25 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=16.0
Q ss_pred CCCCCCCCcceEEEeeee
Q 027661 201 KLPFEDNSFDVITNVCKT 218 (220)
Q Consensus 201 ~LPFeDnSFDaVtcsvSV 218 (220)
+|||++++||+|+|.+++
T Consensus 37 ~lp~~~~~fD~v~~~~~l 54 (160)
T PLN02232 37 DLPFDDCEFDAVTMGYGL 54 (160)
T ss_pred hCCCCCCCeeEEEecchh
Confidence 589999999999998865
No 178
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=81.71 E-value=3.1 Score=38.43 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=42.4
Q ss_pred CcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661 116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 116 FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa 183 (220)
|--.|.--..+-....+.|.+.-.+.++.. ++ +||||.||.+.. |.+.+ .+|+|++.+++.++
T Consensus 167 ~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~--~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~ 232 (352)
T PF05958_consen 167 FRISPGSFFQVNPEQNEKLYEQALEWLDLS--KG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVE 232 (352)
T ss_dssp EEEETTS---SBHHHHHHHHHHHHHHCTT---TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHH
T ss_pred EEECCCcCccCcHHHHHHHHHHHHHHhhcC--CC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHH
Confidence 333455555667777778877777888763 34 899999997655 65544 69999999999987
No 179
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=80.87 E-value=0.75 Score=38.94 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhh-CCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc----C
Q 027661 127 DDPAIAALTKYYSEV-FPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD----L 196 (220)
Q Consensus 127 Dd~ai~~LT~lY~~~-lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD----L 196 (220)
-+..+++|=+.-... ++ |.++|||+||.++- |-.. -.+|+-++.|.+-++. +..+...-..+ +
T Consensus 25 ~drvrealFniL~~~~~~-----g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLE-----GARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp SHHHHHHHHHHHHCH-HT-----T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred cHHHHHHHHHHhcccccC-----CCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 356777777777766 64 89999999996654 4332 3699999999887773 44444332221 2
Q ss_pred CCC-----CCCCCCCCCcceEEE
Q 027661 197 NLN-----PKLPFEDNSFDVITN 214 (220)
Q Consensus 197 N~~-----p~LPFeDnSFDaVtc 214 (220)
+.+ .++.-.+..||.|.+
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE
T ss_pred ccCHHHHHHhhcccCCCceEEEE
Confidence 222 122235677887764
No 180
>PRK01581 speE spermidine synthase; Validated
Probab=80.23 E-value=1.6 Score=41.82 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=39.7
Q ss_pred CCeEeeeccchhhccCCCC---CCCcEEEecCCHHHHhh-C--cCcchhhh---ccCC-----CC--CCCCCCCCCcceE
Q 027661 149 GVSILDLCSSWVSHFPPGY---KQDRIVGMGMNEEELKR-N--PVLTEYVV---QDLN-----LN--PKLPFEDNSFDVI 212 (220)
Q Consensus 149 G~~VLDLccSWvSHLP~~v---~~~~VVGLGmN~eELaa-N--~rL~~~~V---qDLN-----~~--p~LPFeDnSFDaV 212 (220)
..+||+||||-+..+.+-+ .-.+|+.+|+++++++. + +.|.++-. .|-+ .+ --|+-.++.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 3599999999554322111 12699999999999883 3 34432110 1111 11 0133456789999
Q ss_pred EEee
Q 027661 213 TNVC 216 (220)
Q Consensus 213 tcsv 216 (220)
++-+
T Consensus 231 IvDl 234 (374)
T PRK01581 231 IIDF 234 (374)
T ss_pred EEcC
Confidence 9864
No 181
>PLN02366 spermidine synthase
Probab=78.66 E-value=2 Score=39.38 Aligned_cols=40 Identities=5% Similarity=-0.050 Sum_probs=26.0
Q ss_pred CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVL 188 (220)
Q Consensus 149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL 188 (220)
..+||+||||.+ +++-+--.-.+|+.++++++.++. +..+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f 135 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF 135 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh
Confidence 569999999932 222211112589999999998773 4433
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=77.85 E-value=2.8 Score=40.74 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHhhCCCC----CCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------
Q 027661 126 IDDPAIAALTKYYSEVFPPS----NTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------ 191 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~----~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------ 191 (220)
+.++=.+.+..+|-+++-+. +..+..+||||||.+.| +......-.++|++....-+.. ..+..+.
T Consensus 321 ~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~ 400 (506)
T PRK01544 321 LSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFL 400 (506)
T ss_pred CCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEE
Confidence 56666666677776665433 13467899999997776 3333333589999999986663 2222221
Q ss_pred hh-ccCCCCCCCCCCCCCcceEEEeee
Q 027661 192 VV-QDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 192 ~V-qDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
++ .|....... |+++|+|.|.+-|.
T Consensus 401 ~~~~~~~~~~~~-~~~~sv~~i~i~FP 426 (506)
T PRK01544 401 LFPNNLDLILND-LPNNSLDGIYILFP 426 (506)
T ss_pred EEcCCHHHHHHh-cCcccccEEEEECC
Confidence 11 111111233 78999999988763
No 183
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=77.33 E-value=2.6 Score=37.28 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=19.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEeeeccchhhc
Q 027661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH 162 (220)
Q Consensus 133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH 162 (220)
-+-+.-+++||+. |.+||+|+||.+-|
T Consensus 13 pIl~vL~~~l~~~---~~~vLEiaSGtGqH 39 (204)
T PF06080_consen 13 PILEVLKQYLPDS---GTRVLEIASGTGQH 39 (204)
T ss_pred HHHHHHHHHhCcc---CceEEEEcCCccHH
Confidence 3445567778862 33699999997777
No 184
>PLN02476 O-methyltransferase
Probab=77.18 E-value=2 Score=39.21 Aligned_cols=67 Identities=12% Similarity=-0.017 Sum_probs=41.1
Q ss_pred CCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhc-cCC---CCC--CCC-----CCCCCcceE
Q 027661 149 GVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQ-DLN---LNP--KLP-----FEDNSFDVI 212 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~Vq-DLN---~~p--~LP-----FeDnSFDaV 212 (220)
..+||++|++ ...++...++ .++|+.++.|++.++ +++.+.+.-+. .++ .+. .|| -.+++||.|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 4689999999 2233333332 268999999998887 46666665442 111 110 122 135789998
Q ss_pred EEe
Q 027661 213 TNV 215 (220)
Q Consensus 213 tcs 215 (220)
.+-
T Consensus 199 FID 201 (278)
T PLN02476 199 FVD 201 (278)
T ss_pred EEC
Confidence 863
No 185
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=76.92 E-value=2 Score=37.33 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh
Q 027661 133 ALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 133 ~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa 184 (220)
.|.+++.+. .. .++.+||+.+|| -...|.+. + -+|+|+|+++.-+++
T Consensus 25 ~L~~~~~~l-~~--~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 25 ALVEYLDSL-AL--KPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHH-TT--STSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHHHHH
T ss_pred HHHHHHHhc-CC--CCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHHHHH
Confidence 456666662 21 357899999999 23334442 2 399999999998873
No 186
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=75.76 E-value=3.8 Score=39.51 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=51.5
Q ss_pred HHHHHHHh----hCCCC--C-CCCCeEeeeccchhhc-------cCCCCCCCcEEEecCCHHHHh----hCcCcchhhh-
Q 027661 133 ALTKYYSE----VFPPS--N-TPGVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELK----RNPVLTEYVV- 193 (220)
Q Consensus 133 ~LT~lY~~----~lp~~--~-~pG~~VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELa----aN~rL~~~~V- 193 (220)
.+-.+|+. .+|+. + +||.+|||||+.-++- +...-..|.|+.=|.+..-+. +..++.+...
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLL 212 (375)
T ss_pred ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCccee
Confidence 34456665 46665 2 7899999999984443 222222579999999987665 2445544321
Q ss_pred ---ccCCCCCCC------CCCCCCcceEEEee
Q 027661 194 ---QDLNLNPKL------PFEDNSFDVITNVC 216 (220)
Q Consensus 194 ---qDLN~~p~L------PFeDnSFDaVtcsv 216 (220)
++.-.-+.. +.+-..||-|+|-|
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDV 244 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDV 244 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEec
Confidence 222222333 56777899999865
No 187
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=75.26 E-value=4.4 Score=37.36 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=43.9
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh--CcCcchhhhccCCCCCCCCCCCCCcceEEEeeeecC
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR--NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR 220 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa--N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSVd~ 220 (220)
..++||||+| ...++.+-+ .+|.--.+|.-|-.+ .+..+--..++ .. =.+..||+|.|-.=.||
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg~~vl~~~~--w~----~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKGFTVLDIDD--WQ----QTDFKFDVISCLNVLDR 163 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCCCeEEehhh--hh----ccCCceEEEeehhhhhc
Confidence 4589999999 667776633 689999999999774 33332111122 21 13568999999888877
No 188
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=74.43 E-value=3.5 Score=38.61 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhhCcCcch--hhhccCCCCCCCCCCCCCcceEEEee
Q 027661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 149 G~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsv 216 (220)
|+.+||.+||-.-.+-.. ....++|-|++...+.--.+... ..+- .-.++|+.+.|||+++...
T Consensus 46 gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~a---d~l~~p~~~~s~d~~lsia 111 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRA---DALKLPFREESFDAALSIA 111 (293)
T ss_pred cceeeecccCCcccCcCC-CcceeeecchhhhhccccccCCCceeehh---hhhcCCCCCCccccchhhh
Confidence 889999999977765332 22579999999999984332222 1111 1147999999999987643
No 189
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=74.35 E-value=3.1 Score=39.39 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcch------hhhccC--CCC--CCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTE------YVVQDL--NLN--PKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~------~~VqDL--N~~--p~LPFeDnSFDaVtc 214 (220)
+..|||+|||.+ +-+-..+...+|+.+|.+..-++ +.+..+. ..|+++ ..+ ...|..+...|.++|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 668999999933 22333344569999999998887 3222222 233322 223 244556778888776
No 190
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=73.72 E-value=5.5 Score=40.04 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc-cCCCCCCCcEEEecCCHHHHh-h--CcCcch-----hhh-cc
Q 027661 126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELK-R--NPVLTE-----YVV-QD 195 (220)
Q Consensus 126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-LP~~v~~~~VVGLGmN~eELa-a--N~rL~~-----~~V-qD 195 (220)
+--.+.+.|+.+.++..-- .++..+||+|||.+-- +.-.-+-++|+|+.++++... + |-+.++ |.+ |.
T Consensus 363 ~Nt~~aevLys~i~e~~~l--~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGL--PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred cCcHHHHHHHHHHHHHhCC--CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 3456788888888888654 2478999999994432 333224479999999999988 3 555553 344 45
Q ss_pred CCCCCC
Q 027661 196 LNLNPK 201 (220)
Q Consensus 196 LN~~p~ 201 (220)
.+.-+.
T Consensus 441 E~~~~s 446 (534)
T KOG2187|consen 441 EDLFPS 446 (534)
T ss_pred hhccch
Confidence 555443
No 191
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=73.70 E-value=2.8 Score=39.08 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=33.1
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcc
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLT 189 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~ 189 (220)
+..+||++|- ...|+.+.++...|+|+|+.+--+. +.+.+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 6789999997 6677888888889999999998877 344443
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=73.66 E-value=1.1 Score=38.17 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=31.7
Q ss_pred eEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhc----cCCCC-----CCCCCCCCCcceEEEe
Q 027661 151 SILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQ----DLNLN-----PKLPFEDNSFDVITNV 215 (220)
Q Consensus 151 ~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~Vq----DLN~~-----p~LPFeDnSFDaVtcs 215 (220)
.|||++|| -..++... ..+|+++|+|++-++ +.-...-|-|+ =++.+ .++....- ||+|.++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEEC
Confidence 69999999 44556553 468999999999888 33333333221 12222 23443333 8988775
No 193
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=72.35 E-value=3.9 Score=36.90 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhhCCCC--CCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661 127 DDPAIAALTKYYSEVFPPS--NTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 127 Dd~ai~~LT~lY~~~lp~~--~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa 183 (220)
++.|..++++.-...+... ++.-.+||||+||-+.- |.++==.+..+|+|-+++-..
T Consensus 44 g~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~ 105 (227)
T KOG1271|consen 44 GEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVE 105 (227)
T ss_pred CCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHH
Confidence 3445555555544444311 12233999999995544 333312366999999987544
No 194
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=68.14 E-value=2.3 Score=40.47 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCC--CCCCeEeeeccchh--hccCCCCCCCcEEEecCCHHHHhhCc
Q 027661 111 SPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSN--TPGVSILDLCSSWV--SHFPPGYKQDRIVGMGMNEEELKRNP 186 (220)
Q Consensus 111 sdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~--~pG~~VLDLccSWv--SHLP~~v~~~~VVGLGmN~eELaaN~ 186 (220)
++|.-|-++-++-.|-.--.=.--|..||..+-.+. =.|..|||++||.+ |-+...-+..+|++++++.-.-.++.
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~ 100 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARK 100 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHH
Confidence 566667778888888555555556788999876642 14789999999943 44555556689999999864322222
Q ss_pred -----Ccchh--hhccCCCCCCCCCCCCCcceEEE
Q 027661 187 -----VLTEY--VVQDLNLNPKLPFEDNSFDVITN 214 (220)
Q Consensus 187 -----rL~~~--~VqDLN~~p~LPFeDnSFDaVtc 214 (220)
.|++- +.+..=.+-.|| -...|++++
T Consensus 101 iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiIvS 133 (346)
T KOG1499|consen 101 IVKDNGLEDVITVIKGKVEDIELP--VEKVDIIVS 133 (346)
T ss_pred HHHhcCccceEEEeecceEEEecC--ccceeEEee
Confidence 12210 111111223777 577888775
No 195
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=68.09 E-value=8.8 Score=35.67 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc-------cCCCCCCCcEEEecCCHHHHhh-CcCcc
Q 027661 124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKR-NPVLT 189 (220)
Q Consensus 124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELaa-N~rL~ 189 (220)
|+-.-.-.++-.+-..+.+++ |..|+|||||-.++ |.+.-+.-+-+++|+|++.|.. -.+|.
T Consensus 56 tr~E~~iL~~~~~~Ia~~i~~----~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 56 TNDEIEILKKHSSDIAASIPS----GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred hHHHHHHHHHHHHHHHHhcCC----CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 333444444444555566764 78999999996655 4322223578999999999994 55554
No 196
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=67.39 E-value=1.7 Score=38.96 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHh-hCcCcchhhhcc----CCCCC-CCCCC---CCCcceEEE
Q 027661 148 PGVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVVQD----LNLNP-KLPFE---DNSFDVITN 214 (220)
Q Consensus 148 pG~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~p-~LPFe---DnSFDaVtc 214 (220)
||++||+-|.|.+ .+|...+++ |+|+-.+++++-.+ +...+.++...+ .+.+. +--|+ ++.||+|+.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE
Confidence 6999999888733 235555544 89999999999888 455565542211 11221 22232 478999874
No 197
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=66.38 E-value=3.8 Score=38.15 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCeEeeeccchhhccCCCC--CCCcEEEecCCHHH--Hhh-CcCcch---hhhccCCCCC---CCCCCCCCcceEEE
Q 027661 148 PGVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEE--LKR-NPVLTE---YVVQDLNLNP---KLPFEDNSFDVITN 214 (220)
Q Consensus 148 pG~~VLDLccSWvSHLP~~v--~~~~VVGLGmN~eE--Laa-N~rL~~---~~VqDLN~~p---~LPFeDnSFDaVtc 214 (220)
.|.+|||-|.|.+----+.+ +-.+|+-+.-|++= |+. ||==.+ ..++-+-.+. -=-|+|+|||++|-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 49999999999443311111 12377777666654 443 774332 2111111110 11489999999984
No 198
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=63.53 E-value=9.2 Score=35.58 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHh-------hCcCcchhhh--ccCCCC---CCCCCCCCCc
Q 027661 149 GVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELK-------RNPVLTEYVV--QDLNLN---PKLPFEDNSF 209 (220)
Q Consensus 149 G~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELa-------aN~rL~~~~V--qDLN~~---p~LPFeDnSF 209 (220)
.-++||+|+| .+..+. +. ++||.|++++-|+ +||.|++.+. +.-+.. ..+--+++.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W---~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GW---SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CC---eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhccccee
Confidence 4589999999 222222 34 9999999998776 3888888632 221221 2233456799
Q ss_pred ceEEEe
Q 027661 210 DVITNV 215 (220)
Q Consensus 210 DaVtcs 215 (220)
|.++|-
T Consensus 179 dftmCN 184 (299)
T PF05971_consen 179 DFTMCN 184 (299)
T ss_dssp EEEEE-
T ss_pred eEEecC
Confidence 999983
No 199
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=60.80 E-value=4.5 Score=36.64 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhCCCCC-CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHh-----hCcCcchh-hhccCC
Q 027661 129 PAIAALTKYYSEVFPPSN-TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELK-----RNPVLTEY-VVQDLN 197 (220)
Q Consensus 129 ~ai~~LT~lY~~~lp~~~-~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELa-----aN~rL~~~-~VqDLN 197 (220)
+++.+|.+..-.-+..-. +||++||-|+++ .+||+.+-++ .|.|.++.+++..+. +..|-+=. +..|-+
T Consensus 53 P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr 132 (229)
T PF01269_consen 53 PFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR 132 (229)
T ss_dssp TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT
T ss_pred chhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC
Confidence 455666665543332111 579999999986 8999988777 499999999995433 12222111 113333
Q ss_pred CCCCCCCCCCCcceEEEeee
Q 027661 198 LNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 198 ~~p~LPFeDnSFDaVtcsvS 217 (220)
...+-..-=+.+|++.+-++
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S
T ss_pred ChHHhhcccccccEEEecCC
Confidence 22222222237888877664
No 200
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=59.49 E-value=11 Score=33.62 Aligned_cols=64 Identities=25% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc----CC-CC--CCCC-CCCCCcceE
Q 027661 149 GVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD----LN-LN--PKLP-FEDNSFDVI 212 (220)
Q Consensus 149 G~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN-~~--p~LP-FeDnSFDaV 212 (220)
..+||+++++ ....+|+ .++++-++.|++..+ +...+.+.-+.+ +. .+ ..|- +.+.+||.|
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 4589999999 3344665 469999999999999 577787765533 22 12 1122 678999999
Q ss_pred EEe
Q 027661 213 TNV 215 (220)
Q Consensus 213 tcs 215 (220)
.+=
T Consensus 137 FID 139 (219)
T COG4122 137 FID 139 (219)
T ss_pred EEe
Confidence 763
No 201
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=59.02 E-value=7.2 Score=29.86 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=24.0
Q ss_pred eEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661 151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 151 ~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa 183 (220)
.|||+||+++.+ +.......+|++++.|++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 389999996665 322222258999999998876
No 202
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=58.32 E-value=4.7 Score=38.72 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh---hCcCcchhhh---ccCCCC-----CCCCCCCCCcceEEE
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK---RNPVLTEYVV---QDLNLN-----PKLPFEDNSFDVITN 214 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa---aN~rL~~~~V---qDLN~~-----p~LPFeDnSFDaVtc 214 (220)
|.+||||+|= ..-|.... +-.+||++|++..-|. .|-+|+..-- .-+..+ .++-=....||+||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 7899999986 44554331 2259999999999888 2777765321 112222 122224458999886
No 203
>PRK13699 putative methylase; Provisional
Probab=56.62 E-value=4.2 Score=35.45 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCCCC-CCCcEEEecCCHHHHh-hCcCcchh
Q 027661 124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-KQDRIVGMGMNEEELK-RNPVLTEY 191 (220)
Q Consensus 124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v-~~~~VVGLGmN~eELa-aN~rL~~~ 191 (220)
.|--.--.+-+..+....-. +|+.|||-.||.++-+-... -.-+.+|.++|++-.+ +..|+.+.
T Consensus 143 ~hp~~kP~~l~~~~i~~~s~----~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 143 HHPTEKPVTSLQPLIESFTH----PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCCcHHHHHHHHHHhCC----CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 35555445555444443333 59999999888666532211 1358999999998877 46666553
No 204
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=55.59 E-value=8.9 Score=34.75 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCCCC--CCCcEEEecCCHHHHh
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELK 183 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v--~~~~VVGLGmN~eELa 183 (220)
++.+...-+...+.+.+.+..|.++||++||-..|..=.. ...+|+-.|..+..+.
T Consensus 36 ~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~ 93 (256)
T PF01234_consen 36 DEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNRE 93 (256)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHH
T ss_pred chhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHH
Confidence 4555533333344444333458899999999888732221 2278999998765443
No 205
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=52.58 E-value=12 Score=36.09 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=27.1
Q ss_pred CCeEeeeccchhhc-------cCCC--C--CCCcEEEecCCHHHHh-hCcCcc
Q 027661 149 GVSILDLCSSWVSH-------FPPG--Y--KQDRIVGMGMNEEELK-RNPVLT 189 (220)
Q Consensus 149 G~~VLDLccSWvSH-------LP~~--v--~~~~VVGLGmN~eELa-aN~rL~ 189 (220)
+.+|||.|||-+.- ++.. . -..+++|.|++++-+. .+..|.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 56999999994443 3321 0 1258999999999887 344443
No 206
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=52.14 E-value=8.6 Score=36.36 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=37.5
Q ss_pred cccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHHHh
Q 027661 113 DSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELK 183 (220)
Q Consensus 113 D~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eELa 183 (220)
+..||. |+...-=|=. +..+.. |.+...+ .++-+|||++||.+.- +..+. +-.+|++.|+|++-.+
T Consensus 14 ~~vFYN-P~~~~nRDls-v~~~~~-~~~~~~~--~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~ 83 (374)
T TIGR00308 14 ETVFYN-PRMQFNRDLS-VTCIQA-FDNLYGK--ECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE 83 (374)
T ss_pred CCcccC-chhhccccHH-HHHHHH-HHHhhCC--cCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH
Confidence 567883 4444443432 222322 3443331 1245899999994433 22222 2268999999998776
No 207
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=51.79 E-value=27 Score=31.44 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=36.6
Q ss_pred CeEeeeccchhhccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCC-CCCCCcceEEEeee
Q 027661 150 VSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-FEDNSFDVITNVCK 217 (220)
Q Consensus 150 ~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LP-FeDnSFDaVtcsvS 217 (220)
-++||+||=+.-..-...+.-.|+-+|+|. +.|...+ ||+=.-| || -++++||+|.|+.-
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns----~~~~I~q---qDFm~rp-lp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNS----QHPGILQ---QDFMERP-LPKNESEKFDVISLSLV 113 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCC----CCCCcee---eccccCC-CCCCcccceeEEEEEEE
Confidence 379999986444333333344699999997 4444433 3321111 33 25889999999864
No 208
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=51.68 E-value=17 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=27.6
Q ss_pred CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa 183 (220)
+||++||=|.|| --++|.. ++.+|+.+|||+..++
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~a 71 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNA 71 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHH
Confidence 468999999998 4444444 5689999999998876
No 209
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=51.34 E-value=11 Score=33.34 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=43.1
Q ss_pred eEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-----CCCC--CCCCCcceEEEeee
Q 027661 151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-----PKLP--FEDNSFDVITNVCK 217 (220)
Q Consensus 151 ~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-----p~LP--FeDnSFDaVtcsvS 217 (220)
.+|+||||-+.| ++..-..-..+|+.+-..=+.. ..++.+.-++++... .-|+ ++|+|.|.|.+.|.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 799999995555 4443333589999998887773 666655433322222 1222 46679999988764
No 210
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=49.62 E-value=14 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh
Q 027661 147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa 183 (220)
++|++||=|+.+ .+||..+-++.|.|.|+.|++..+.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r 114 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR 114 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH
Confidence 469999999988 8999998888899999999998765
No 211
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.18 E-value=58 Score=30.59 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCCC-C-CC-CcEEEecCCHHHHh-------hCcCcchhhhccCCCCC
Q 027661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-Y-KQ-DRIVGMGMNEEELK-------RNPVLTEYVVQDLNLNP 200 (220)
Q Consensus 131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~-v-~~-~~VVGLGmN~eELa-------aN~rL~~~~VqDLN~~p 200 (220)
|-.|.+|-.+--....+++.++||++.|-.--||=- + .| =+-||-|.+..-|+ +||+|...+.-.+.+++
T Consensus 61 ih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 61 IHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCc
Confidence 555666665554433345789999999955444430 1 11 36788888776654 49999887543333332
Q ss_pred -----CCCCCCCCcceEEEe
Q 027661 201 -----KLPFEDNSFDVITNV 215 (220)
Q Consensus 201 -----~LPFeDnSFDaVtcs 215 (220)
.+--.++-||+++|.
T Consensus 141 ~~if~giig~nE~yd~tlCN 160 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCN 160 (292)
T ss_pred cccccccccccceeeeEecC
Confidence 223458899999994
No 212
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=45.48 E-value=15 Score=30.38 Aligned_cols=67 Identities=30% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcch------hhhccCCCCCCC---CCCCCCcceE
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTE------YVVQDLNLNPKL---PFEDNSFDVI 212 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~------~~VqDLN~~p~L---PFeDnSFDaV 212 (220)
.|.+||+||||.+.= +..-.+..+|+--|.++ -+. .|-+++. -.+.-|.+.-.+ .++.++||.|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 478999999984321 11112446999999998 444 2333321 122334332111 1345789999
Q ss_pred EEe
Q 027661 213 TNV 215 (220)
Q Consensus 213 tcs 215 (220)
+++
T Consensus 124 las 126 (173)
T PF10294_consen 124 LAS 126 (173)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 213
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.36 E-value=42 Score=30.24 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=25.2
Q ss_pred CeEeeeccc--hhh-ccCCCCC-CCcEEEecCCHHHHhh
Q 027661 150 VSILDLCSS--WVS-HFPPGYK-QDRIVGMGMNEEELKR 184 (220)
Q Consensus 150 ~~VLDLccS--WvS-HLP~~v~-~~~VVGLGmN~eELaa 184 (220)
..+|+|+|| .+| .|...+. .......|+|++-+++
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~ 83 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA 83 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH
Confidence 379999999 223 3444333 3678999999999986
No 214
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=44.87 E-value=16 Score=33.50 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHh----hCcCcch
Q 027661 148 PGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELK----RNPVLTE 190 (220)
Q Consensus 148 pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELa----aN~rL~~ 190 (220)
+|..+||+++|.+=. |-. +-.+|+++|....+|+ .+||...
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~d~rV~~ 127 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRNDPRVIV 127 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhcCCcEEE
Confidence 488999999995544 322 3369999999998877 3666654
No 215
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=42.70 E-value=13 Score=29.78 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc--hhhccCCCCCCCcEEEecCCHHHHh
Q 027661 125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS--WvSHLP~~v~~~~VVGLGmN~eELa 183 (220)
|--.--.+-+..+.+..-. +|+.|||-.|| .+.+....+ .-+.+|.++|++=..
T Consensus 172 h~~~kP~~l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~ 227 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTN----PGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCE 227 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHH
T ss_pred eeecCCHHHHHHHHHhhhc----cceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHH
Confidence 4343344444444544444 49999997777 444444333 247999999987544
No 216
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=41.68 E-value=20 Score=35.04 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=42.9
Q ss_pred CCCCeEeeeccchhhccCCCCCC-CcEEEecCCHHHHhhCcC--------cchh---------hhccCCCCCCCCCCCCC
Q 027661 147 TPGVSILDLCSSWVSHFPPGYKQ-DRIVGMGMNEEELKRNPV--------LTEY---------VVQDLNLNPKLPFEDNS 208 (220)
Q Consensus 147 ~pG~~VLDLccSWvSHLP~~v~~-~~VVGLGmN~eELaaN~r--------L~~~---------~VqDLN~~p~LPFeDnS 208 (220)
+||..|+|=--|.+|-|=..-.. +.|+|-|++..++.+-.. +.+| ++.|.+..+ | -....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~-~-rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP-L-RSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-h-hhcce
Confidence 57999999888877775443333 789999999999884222 2222 223333332 1 13788
Q ss_pred cceEEE
Q 027661 209 FDVITN 214 (220)
Q Consensus 209 FDaVtc 214 (220)
|||++|
T Consensus 285 fDaIvc 290 (421)
T KOG2671|consen 285 FDAIVC 290 (421)
T ss_pred eeEEEe
Confidence 999999
No 217
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=40.20 E-value=5.8 Score=36.37 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---CcCcch
Q 027661 149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NPVLTE 190 (220)
Q Consensus 149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~rL~~ 190 (220)
|.+||||+|= +..|... -+-.+|+++|++..-|+. |=+|+.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg 170 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNG 170 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT
T ss_pred CCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 7899999974 6666322 122589999999998882 555554
No 218
>PRK11524 putative methyltransferase; Provisional
Probab=39.96 E-value=23 Score=31.52 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=40.9
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhcc--CCCCCCCcEEEecCCHHHHh-hCcCcch
Q 027661 122 FVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELK-RNPVLTE 190 (220)
Q Consensus 122 fVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHL--P~~v~~~~VVGLGmN~eELa-aN~rL~~ 190 (220)
...|--.--++-+..+.+..-. +|+.|||-.+|.++-+ +... .-+.+|.++|++=.+ +..||..
T Consensus 186 ~~~HPt~kP~~L~erlI~~~S~----~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 186 YENHPTQKPEALLKRIILASSN----PGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cccCcccChHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 3346555555555555544443 5999999888865552 2222 358999999998777 4667654
No 219
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=39.93 E-value=17 Score=37.95 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=25.1
Q ss_pred HHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCH
Q 027661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNE 179 (220)
Q Consensus 134 LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~ 179 (220)
|.+-| .+|. ++..||||||--+.- -...++ .+-|||+|+-+
T Consensus 35 ln~ky-~fl~----~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 35 LNKKY-KFLE----KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHh-cccc----ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 44556 4454 488999999973333 112222 26899999754
No 220
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=39.12 E-value=22 Score=33.76 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCCeEeeeccchhhc-cCCCCCC-CcEEEecCCHHHHh---hCcCcchh--hhccCCCCC-CCCCCCCCcceEEEe
Q 027661 148 PGVSILDLCSSWVSH-FPPGYKQ-DRIVGMGMNEEELK---RNPVLTEY--VVQDLNLNP-KLPFEDNSFDVITNV 215 (220)
Q Consensus 148 pG~~VLDLccSWvSH-LP~~v~~-~~VVGLGmN~eELa---aN~rL~~~--~VqDLN~~p-~LPFeDnSFDaVtcs 215 (220)
+|..||||-+|-+-. +|-.... .+|+..|+|+.-.+ .|-+|+.. .+.-++.+. ..+..-..||-|++.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~ 263 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMG 263 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeC
Confidence 499999999995544 3322122 34999999997655 47777764 122333331 223332888888875
No 221
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=38.89 E-value=86 Score=28.79 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=23.9
Q ss_pred CeEeeeccchhhc-----------cCCCCCCCcEEEecCCHHHHhh
Q 027661 150 VSILDLCSSWVSH-----------FPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 150 ~~VLDLccSWvSH-----------LP~~v~~~~VVGLGmN~eELaa 184 (220)
-+|+..+||.+-. ++..-..-+|+|.|+|.+.|++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~ 162 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEK 162 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHH
Confidence 6999999993222 2211012379999999999983
No 222
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=37.11 E-value=21 Score=32.48 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=21.3
Q ss_pred CCCeEeeeccchhhc---cCCCCCC-CcEEEecCC
Q 027661 148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMN 178 (220)
Q Consensus 148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN 178 (220)
||++|||++|--+|- --+.+.+ |.|.|+|+=
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 489999999974443 2233433 889999873
No 223
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=37.08 E-value=66 Score=27.85 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhc----cCCCC
Q 027661 132 AALTKYYSEVFPPSNTPGVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQ----DLNLN 199 (220)
Q Consensus 132 ~~LT~lY~~~lp~~~~pG~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~Vq----DLN~~ 199 (220)
.++-+...+...+ .+||++||+ +...+|++ ++|+-++.|++..+ +.+-+.+.-.+ -++.+
T Consensus 34 g~lL~~l~~~~~~-----k~vLEIGt~~GySal~la~~l~~~---g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd 105 (205)
T PF01596_consen 34 GQLLQMLVRLTRP-----KRVLEIGTFTGYSALWLAEALPED---GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTT---SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-
T ss_pred HHHHHHHHHhcCC-----ceEEEeccccccHHHHHHHhhccc---ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 3343444555544 389999998 44456653 69999999999888 45555543221 12222
Q ss_pred -----CCCC--CCCCCcceEEEe
Q 027661 200 -----PKLP--FEDNSFDVITNV 215 (220)
Q Consensus 200 -----p~LP--FeDnSFDaVtcs 215 (220)
++|. -+.+.||.|.+=
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiD 128 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFID 128 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEE
T ss_pred cHhhHHHHHhccCCCceeEEEEc
Confidence 1221 114589998763
No 224
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=36.06 E-value=23 Score=30.01 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=32.6
Q ss_pred CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch--hhhccCCCCCCCCCCCCCcceEEEee
Q 027661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsv 216 (220)
..+|||||+|-+.+ +.......+++-+|+ ++-++...+.+. +...|+- -|++. +|++++..
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f----~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF----DPLPV--ADVYLLRH 166 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT----TCCSS--ESEEEEES
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH----hhhcc--ccceeeeh
Confidence 56899999994443 222223348999999 666664222111 1224443 23444 89988753
No 225
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=34.28 E-value=32 Score=34.33 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=40.0
Q ss_pred eEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh--CcCcchh-hhccCCCC-CCCCCCCCCcceEEE
Q 027661 151 SILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR--NPVLTEY-VVQDLNLN-PKLPFEDNSFDVITN 214 (220)
Q Consensus 151 ~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa--N~rL~~~-~VqDLN~~-p~LPFeDnSFDaVtc 214 (220)
++|=++|| ..-|+ .+.++..|+=.|.+.--.+. .+...+. ..+-...+ -.+.|+|+|||.||-
T Consensus 51 ~~l~lGCGNS~l~e~l-y~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHL-YKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHH-HhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEe
Confidence 89999999 22333 23467889999999876663 1111222 12222222 378999999999973
No 226
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=32.82 E-value=72 Score=28.54 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=22.5
Q ss_pred CCCCcccCcCCCCccCCCC-HHHHHHHHHHHHhhCCCCCCCCCeEeeecc
Q 027661 109 DESPDSLFYETPRFVTHID-DPAIAALTKYYSEVFPPSNTPGVSILDLCS 157 (220)
Q Consensus 109 DesdD~~FY~~PRfVtHID-d~ai~~LT~lY~~~lp~~~~pG~~VLDLcc 157 (220)
+-+||+ ||+--|+. | +.++++..++ +.. |+.|+|+|.
T Consensus 8 N~tpdS-F~dg~~~~---~~~~~~~~a~~~----~~~----GAdiIDIG~ 45 (257)
T cd00739 8 NVTPDS-FSDGGRFL---SLDKAVAHAEKM----IAE----GADIIDIGG 45 (257)
T ss_pred cCCCCC-CCCCCCCC---CHHHHHHHHHHH----HHC----CCCEEEECC
Confidence 345665 78777663 4 4555544333 332 999999984
No 227
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=32.06 E-value=2.4e+02 Score=23.87 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc-hhhccCCC-CCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCC-
Q 027661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSS-WVSHFPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP- 203 (220)
Q Consensus 127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS-WvSHLP~~-v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LP- 203 (220)
|+..++.|.+.-.+...+ +.+|+=|||= --.|+-.. ....++.=+|+...=-.-.+. +|..-|.|...++|
T Consensus 8 s~~T~~~l~~~l~~~~~~----~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~--~F~fyD~~~p~~~~~ 81 (162)
T PF10237_consen 8 SDETAEFLARELLDGALD----DTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD--EFVFYDYNEPEELPE 81 (162)
T ss_pred CHHHHHHHHHHHHHhcCC----CCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc--ceEECCCCChhhhhh
Confidence 788888888877776643 6799999986 22222221 111355555554321111111 34558899887887
Q ss_pred -CCCCCcceEEE
Q 027661 204 -FEDNSFDVITN 214 (220)
Q Consensus 204 -FeDnSFDaVtc 214 (220)
| -++||+|++
T Consensus 82 ~l-~~~~d~vv~ 92 (162)
T PF10237_consen 82 EL-KGKFDVVVI 92 (162)
T ss_pred hc-CCCceEEEE
Confidence 5 679999986
No 228
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.14 E-value=71 Score=28.50 Aligned_cols=36 Identities=33% Similarity=0.589 Sum_probs=22.3
Q ss_pred CCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeec
Q 027661 110 ESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLC 156 (220)
Q Consensus 110 esdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLc 156 (220)
-+||+ ||+.-++.+. +.++++.. +.+.. |+.|+|+|
T Consensus 8 ~tpdS-F~dg~~~~~~--~~~~~~a~----~~~~~----GA~iIDIG 43 (257)
T TIGR01496 8 VTPDS-FSDGGRFLSV--DKAVAHAE----RMLEE----GADIIDVG 43 (257)
T ss_pred CCCCC-CCCCCCCCCH--HHHHHHHH----HHHHC----CCCEEEEC
Confidence 35665 8887776433 44554443 33433 99999997
No 229
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.00 E-value=78 Score=29.11 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=57.1
Q ss_pred CCCCCcccCcCCCCccC-----CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCC--CCcEEEecC
Q 027661 108 FDESPDSLFYETPRFVT-----HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYK--QDRIVGMGM 177 (220)
Q Consensus 108 ~DesdD~~FY~~PRfVt-----HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~--~~~VVGLGm 177 (220)
.+...|.-||- =+-- ||=..+.+.| ...|. ||.+.||+++|.+ .-+..=++ .+.++|++.
T Consensus 47 ~n~y~d~pq~~--G~n~~iSAp~mha~~le~L----~~~L~----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh 116 (237)
T KOG1661|consen 47 TNPYMDSPQKI--GYNLTISAPHMHATALEYL----DDHLQ----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH 116 (237)
T ss_pred cCCCCCCcccc--CCceEEcchHHHHHHHHHH----HHhhc----cCcceeecCCCccHHHHHHHHHhcCCCccccchhh
Confidence 56667776652 2223 4444444433 34454 4999999999922 11111111 134589988
Q ss_pred CHHHHh-hCcCcchhhh-----ccCCCC---------CCCCCCCCCcceEEEeeeec
Q 027661 178 NEEELK-RNPVLTEYVV-----QDLNLN---------PKLPFEDNSFDVITNVCKTH 219 (220)
Q Consensus 178 N~eELa-aN~rL~~~~V-----qDLN~~---------p~LPFeDnSFDaVtcsvSVd 219 (220)
=++-.. ..+.|+.+.- .-+..- -++-=+++.||+|-|+.+++
T Consensus 117 ~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~ 173 (237)
T KOG1661|consen 117 IPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAAS 173 (237)
T ss_pred hHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCcc
Confidence 877766 4666665542 101100 13344788999999998764
No 230
>PHA00649 hypothetical protein
Probab=28.22 E-value=29 Score=26.91 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.4
Q ss_pred eehhhHHHHHHHHhhhc
Q 027661 52 VVGLGAAFCSQFMTMAG 68 (220)
Q Consensus 52 ~~~~~~~~~~~~~~~~g 68 (220)
+.|+||+.|..|.+|.|
T Consensus 65 ~~~iGAA~W~G~~s~Lg 81 (83)
T PHA00649 65 AVALGAAVWAGITSKLG 81 (83)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34889999999998887
No 231
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=28.10 E-value=33 Score=32.14 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--hhccCCCCC-CC-----CC-CCCCcceEE
Q 027661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--VVQDLNLNP-KL-----PF-EDNSFDVIT 213 (220)
Q Consensus 147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--~VqDLN~~p-~L-----PF-eDnSFDaVt 213 (220)
+||..++|.=-|-+=| +-+.+..++|+|+|..++.++ +..+|..+ -+.-++.+. +| .. .-+.+|.|+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 3578999966665555 334444479999999999997 57777754 111111110 00 11 346888888
Q ss_pred Eeeee
Q 027661 214 NVCKT 218 (220)
Q Consensus 214 csvSV 218 (220)
.=.||
T Consensus 99 ~DLGv 103 (310)
T PF01795_consen 99 FDLGV 103 (310)
T ss_dssp EE-S-
T ss_pred Ecccc
Confidence 76665
No 232
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=27.88 E-value=54 Score=29.14 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=37.2
Q ss_pred eEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch-hhhccCCCCCCCCCCCCCcceEEEee
Q 027661 151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE-YVVQDLNLNPKLPFEDNSFDVITNVC 216 (220)
Q Consensus 151 ~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~-~~VqDLN~~p~LPFeDnSFDaVtcsv 216 (220)
+||||+||-+.- + +..+...|++.|+|+.-.+. +..... ....|+.......+ ...+|.++.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl-~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~-~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGL-EKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDF-IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHH-HHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhc-CCCCCEEEeCC
Confidence 699999993332 2 12345688999999998873 222222 22344443321111 24699998875
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=27.59 E-value=53 Score=28.54 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=19.8
Q ss_pred CCCCeEeeeccchhh------ccCCCCCCCcEEEecCCHHHH
Q 027661 147 TPGVSILDLCSSWVS------HFPPGYKQDRIVGMGMNEEEL 182 (220)
Q Consensus 147 ~pG~~VLDLccSWvS------HLP~~v~~~~VVGLGmN~eEL 182 (220)
++++..+|||||.+. ... +..+++|+.++++=-
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~---~~~~~~GIEi~~~~~ 79 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQT---GCKKSVGIEILPELH 79 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH-----SEEEEEE-SHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHc---CCcEEEEEEechHHH
Confidence 358899999999433 332 235799999998733
No 234
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=27.31 E-value=79 Score=31.80 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=60.3
Q ss_pred cCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc-----hhhccCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661 115 LFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS-----WVSHFPPGYKQDRIVGMGMNEEELKR-NPVL 188 (220)
Q Consensus 115 ~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS-----WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL 188 (220)
.+|..-|+-.- =+.+.++-++...+.|+- .-..++|+++| |+.|+-..-.-..++-+|-|..|++. -..+
T Consensus 171 ~~~~~arld~g--Ya~v~~~~~e~~~~~p~f--~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~l 246 (491)
T KOG2539|consen 171 NVYPLARLDHG--YALVTRSNKEINMRSPKF--RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNL 246 (491)
T ss_pred ccccccccccc--hHHHHHHHHHHhhcCccc--ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhh
Confidence 67777776321 123334444444444431 12478999998 87775443333578889999999984 3333
Q ss_pred c------hhhhccCCC-CCCCCCCCC-CcceEEEeeee
Q 027661 189 T------EYVVQDLNL-NPKLPFEDN-SFDVITNVCKT 218 (220)
Q Consensus 189 ~------~~~VqDLN~-~p~LPFeDn-SFDaVtcsvSV 218 (220)
. +.++..++. ...+|-... -||+|||++.+
T Consensus 247 r~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l 284 (491)
T KOG2539|consen 247 RDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKL 284 (491)
T ss_pred cChhhcCchhccccchhcccCCCCcccceeeEEeeeee
Confidence 3 335555333 257786544 49999999864
No 235
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=26.74 E-value=1.1e+02 Score=29.78 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=28.5
Q ss_pred cCCCCCcccCcCCCCc---cCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc
Q 027661 107 RFDESPDSLFYETPRF---VTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS 158 (220)
Q Consensus 107 R~DesdD~~FY~~PRf---VtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS 158 (220)
=+|-+.|+++=.-=|. ..||-+.-.++|-.+ .. -+++..++|-|||
T Consensus 153 ~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-----ag-w~~~~pl~DPmCG 201 (381)
T COG0116 153 GIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-----AG-WKPDEPLLDPMCG 201 (381)
T ss_pred EEeCCCcchhhccccccCCCCCchHHHHHHHHHH-----cC-CCCCCccccCCCC
Confidence 3577888887444444 455666665555321 11 1457789999999
No 236
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=25.72 E-value=48 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCCCeEeeeccc--hhhc-cCCCCCC-CcEEEecCCH
Q 027661 147 TPGVSILDLCSS--WVSH-FPPGYKQ-DRIVGMGMNE 179 (220)
Q Consensus 147 ~pG~~VLDLccS--WvSH-LP~~v~~-~~VVGLGmN~ 179 (220)
+||..||.=++| -.|| +...+++ |++.-+++-+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~ 140 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE 140 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH
Confidence 369999998877 5566 6677777 9999999943
No 237
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=25.35 E-value=1.1e+02 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.7
Q ss_pred CeEeeeccchhhc-------cCCCCCCCcEEEecCCHHHHhh
Q 027661 150 VSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKR 184 (220)
Q Consensus 150 ~~VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELaa 184 (220)
-+||||+||.+++ .|+. ...|.=-|+++.-+++
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~ 176 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEK 176 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHH
Confidence 5999999998888 3432 2588889999988774
No 238
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=24.94 E-value=66 Score=28.60 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhh--CcCcchhhhccCCCC----CCCC
Q 027661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKR--NPVLTEYVVQDLNLN----PKLP 203 (220)
Q Consensus 130 ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaa--N~rL~~~~VqDLN~~----p~LP 203 (220)
|+.+|.+-||+.|..+-+ .|---|.|+. .-+++=+--|.|.+.+ +.|-.+|...++=.. .++|
T Consensus 90 ACSaLKk~YRdILr~sl~---------~gk~~~~~~~--~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p 158 (191)
T KOG3354|consen 90 ACSALKKKYRDILRHSLK---------DGKPGKCPES--QLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAP 158 (191)
T ss_pred EhHHHHHHHHHHHHhhcc---------cCCccCCccc--eEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCC
Confidence 455666666666653210 2222244532 1366666669999984 777777755444333 4788
Q ss_pred CCCCCcceEEEeee
Q 027661 204 FEDNSFDVITNVCK 217 (220)
Q Consensus 204 FeDnSFDaVtcsvS 217 (220)
=+|++ |.|+++|-
T Consensus 159 ~~~e~-div~isv~ 171 (191)
T KOG3354|consen 159 DADEE-DIVTISVK 171 (191)
T ss_pred CCCcc-ceEEEeec
Confidence 88887 88888763
No 239
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=24.61 E-value=69 Score=28.11 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHh-hCCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHh
Q 027661 128 DPAIAALTKYYSE-VFPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELK 183 (220)
Q Consensus 128 d~ai~~LT~lY~~-~lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELa 183 (220)
|..+++|=+.-+. .+. |.++|||++|.++= |.. +-.+|+-++.|.+-.+
T Consensus 27 drVREalFNil~~~~i~-----g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~ 80 (187)
T COG0742 27 DRVREALFNILAPDEIE-----GARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVK 80 (187)
T ss_pred hHHHHHHHHhccccccC-----CCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHH
Confidence 4566666665555 354 89999999997665 333 2369999999998776
No 240
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=24.53 E-value=66 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.0
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCC
Q 027661 122 FVTHIDDPAIAALTKYYSEVFPP 144 (220)
Q Consensus 122 fVtHIDd~ai~~LT~lY~~~lp~ 144 (220)
=|+|||..++..|.+.+++.-..
T Consensus 48 ~v~~iDssgi~~L~~~~~~~~~~ 70 (106)
T TIGR02886 48 NVTFMDSSGLGVILGRYKKIKNE 70 (106)
T ss_pred CCcEecchHHHHHHHHHHHHHHc
Confidence 37899999999999999997754
No 241
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=23.85 E-value=36 Score=32.29 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhhCcCc-chhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661 147 TPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVCK 217 (220)
Q Consensus 147 ~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaaN~rL-~~~~VqDLN~~p~LPFeDnSFDaVtcsvS 217 (220)
+||.+|+=.++|-.-| +...++ .+|+++|-|++-++.-.+| .++.+...+.++.=+... .||+++.+++
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~-~~d~ii~tv~ 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKE-IADAIIDTVG 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHh-hCcEEEECCC
Confidence 6899999999996666 344344 7999999999988754444 233332123332111111 2999998876
No 242
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.16 E-value=79 Score=23.25 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.5
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCC
Q 027661 122 FVTHIDDPAIAALTKYYSEVFPP 144 (220)
Q Consensus 122 fVtHIDd~ai~~LT~lY~~~lp~ 144 (220)
=|+|||..++..|.++|++.-..
T Consensus 48 ~v~~iDssgl~~L~~l~~~~~~~ 70 (100)
T cd06844 48 ALEFMDSSGTGVLLERSRLAEAV 70 (100)
T ss_pred CCcEEcHHHHHHHHHHHHHHHHc
Confidence 47899999999999999998764
No 243
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=21.90 E-value=66 Score=30.44 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCH
Q 027661 128 DPAIAALTKYYSEVFPPSN-TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNE 179 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~-~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~ 179 (220)
.+|+..|.+-.--=+-... +||.+||=|+++ .+||..+-+++ +-|..+.++.
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 3456665544332222111 579999999988 89999888877 8888888875
No 244
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=21.56 E-value=1.5e+02 Score=27.30 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=25.9
Q ss_pred ccccCCCCCcccCcCCCCccCCCC-HHHHHHHHHHHHhhCCCCCCCCCeEeeecc
Q 027661 104 DFQRFDESPDSLFYETPRFVTHID-DPAIAALTKYYSEVFPPSNTPGVSILDLCS 157 (220)
Q Consensus 104 ~f~R~DesdD~~FY~~PRfVtHID-d~ai~~LT~lY~~~lp~~~~pG~~VLDLcc 157 (220)
=+-=++-+||+ ||+--|+. | +.++++.. +++.+ |+.|+||++
T Consensus 17 imGIlNvTpDS-Fsdgg~~~---~~~~a~~~a~----~~~~~----GAdIIDIGg 59 (282)
T PRK11613 17 VMGILNVTPDS-FSDGGTHN---SLIDAVKHAN----LMINA----GATIIDVGG 59 (282)
T ss_pred EEEEEcCCCCC-CCCCCCCC---CHHHHHHHHH----HHHHC----CCcEEEECC
Confidence 34445667776 78777763 4 34444443 33433 999999994
No 245
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=21.54 E-value=71 Score=23.77 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHHHHHHhhCCC
Q 027661 123 VTHIDDPAIAALTKYYSEVFPP 144 (220)
Q Consensus 123 VtHIDd~ai~~LT~lY~~~lp~ 144 (220)
|+|||..++..|.++++++-..
T Consensus 58 v~~iDssgi~~L~~~~~~~~~~ 79 (117)
T PF01740_consen 58 VSFIDSSGIQALVDIIKELRRR 79 (117)
T ss_dssp ESEESHHHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHHHC
Confidence 6899999999999999998864
No 246
>PRK13753 dihydropteroate synthase; Provisional
Probab=20.61 E-value=1.4e+02 Score=27.53 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccch
Q 027661 110 ESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSW 159 (220)
Q Consensus 110 esdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSW 159 (220)
-+||+ ||+--++.+. +.++++..++ +.+ |+.|+|+|.-.
T Consensus 10 vTPDS-FsDGg~~~~~--d~a~~~a~~m----~~~----GAdIIDIGgeS 48 (279)
T PRK13753 10 LTEDS-FFDESRRLDP--AGAVTAAIEM----LRV----GSDVVDVGPAA 48 (279)
T ss_pred CCCCC-CCCCCCCCCH--HHHHHHHHHH----HHC----CCcEEEECCCC
Confidence 35555 7777665321 6666666544 433 89999999853
No 247
>smart00463 SMR Small MutS-related domain.
Probab=20.22 E-value=1e+02 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCC-eEeeeccchhhcc
Q 027661 128 DPAIAALTKYYSEVFPPSNTPGV-SILDLCSSWVSHF 163 (220)
Q Consensus 128 d~ai~~LT~lY~~~lp~~~~pG~-~VLDLccSWvSHL 163 (220)
++|+..|.+...+.... +. +.+.+.+|+++|=
T Consensus 12 ~eA~~~l~~~l~~~~~~----~~~~~~~II~G~G~~s 44 (80)
T smart00463 12 EEALTALDKFLNNARLK----GLEQKLVIITGKGKHS 44 (80)
T ss_pred HHHHHHHHHHHHHHHHc----CCCceEEEEEcccCCC
Confidence 47888888888877764 55 7899999999884
Done!