BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027662
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/206 (88%), Positives = 195/206 (94%)
Query: 8 QLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDG 67
Q SKF+RICVFCGSSQGKKSSYQDAA++LG ELVSRNIDLVYGGGSIGL GLVSQAVHDG
Sbjct: 9 QKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDG 68
Query: 68 GRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 127
GRHVIG+IPKTL PRELTGETVGEV+AVAD HQRKAE AKHSDAFIALPGGYGTLEELLE
Sbjct: 69 GRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLE 128
Query: 128 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKL 187
VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP+AR+IIVSAPT KELVKKL
Sbjct: 129 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKL 188
Query: 188 EEYVPCHERVASKLNWEMEQLGYTQD 213
EEY PCHERVA+KL WE E++GY+ +
Sbjct: 189 EEYAPCHERVATKLCWEXERIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 239 bits (611), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/202 (65%), Positives = 161/202 (79%)
Query: 8 QLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDG 67
Q S+F++ICVFCGS G + + DAAIELG ELV R IDLVYGGGS+GL GL+S+ V++G
Sbjct: 5 QRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLXGLISRRVYEG 64
Query: 68 GRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 127
G HV+G+IPK L P E++GETVG+V+ VAD H+RKA A+ ++AFIALPGGYGT EELLE
Sbjct: 65 GLHVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEELLE 124
Query: 128 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKL 187
ITW+QLGIH K VGLLNVDGYYN+LL+ D VEEGFI P AR I+VSAPT KEL +K
Sbjct: 125 XITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELXEKX 184
Query: 188 EEYVPCHERVASKLNWEMEQLG 209
EEY P H VAS +W++E+LG
Sbjct: 185 EEYTPSHXHVASHESWKVEELG 206
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%)
Query: 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVI 72
K ICVF GS+ G +Y+ A ELG + I LVYGG +GL G ++ A+ + G I
Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYXAEQGIGLVYGGSRVGLXGTIADAIXENGGTAI 61
Query: 73 GVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWA 132
GV P L E+ + + E+ V H+RKA+ ++ +D FI+ PGG+GT EEL EV+ WA
Sbjct: 62 GVXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWA 121
Query: 133 QLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEY 190
Q+GIH KP+GL NV+GY+ + +++EGF + S ++I S+ EL+++ + Y
Sbjct: 122 QIGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELIEQXQNY 179
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 99/178 (55%), Gaps = 4/178 (2%)
Query: 15 ICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74
+CV+C S + AA E+G + +R LV GGG++ MG V+QA G H +GV
Sbjct: 25 VCVYCASGPTHPELLELAA-EVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKGGHTVGV 83
Query: 75 IPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL 134
IPK L+ REL E+ M +RK EM SDAFIALPGG GTLEE E T L
Sbjct: 84 IPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEEFFEAWTAGYL 143
Query: 135 GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVP 192
G+HDKP+ LL+ G+Y+ LL+++ V G++S A +V V + LE P
Sbjct: 144 GMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLV---VVDNVEAALEACAP 198
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 47 LVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMA 106
LV+GGG + MG VS A G +GVIPK L+ REL E+ M +RK M
Sbjct: 47 LVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVME 106
Query: 107 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFI 166
++AFI LPGG GTL+ELL+V T LG+HDK + +L+ G+++ L +++ + + G++
Sbjct: 107 DRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYV 166
Query: 167 SPSARQIIVSAPTVKELVKKLEEYVP 192
S +A + ++ V L L+ P
Sbjct: 167 SRTAMERLI---VVDNLDDALQACAP 189
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 101 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDK 159
RK +++ F+ LPGG+GTL+EL EV+ Q +H PV LL+ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 160 AVEEGFISPSARQIIVSAPTVKELVKKLEEYVP 192
++ + P Q+ +E+V+ L+ P
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALKAEAP 215
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 27 SSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTG 86
S +D +ELG+ L + LV+ GG G+ LVSQ V + G V+G++P
Sbjct: 41 SELRDICLELGRTLAKKGY-LVFNGGRDGVXELVSQGVREAGGTVVGILPD--------- 90
Query: 87 ETVGE------VKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKP 140
E G VK D R + +++D +++ G GT +E++ LG KP
Sbjct: 91 EEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIGGEIGT---AIEILGAYALG---KP 144
Query: 141 VGLLNVDGYYNSLLSFIDKAVEEGFISPSARQI-IVSAPTVKELVKKLEE 189
V LL G + +S + + +G + R + I A TV+E V+ +E+
Sbjct: 145 VILLRGTGGWTDRIS---QVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 4/143 (2%)
Query: 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVI 72
+ + VF S + + G+ L L GG G L ++ V G V+
Sbjct: 2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGXEAL-ARGVKAKGGLVV 60
Query: 73 GVIPKTLMP-RELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITW 131
GV P R V A + QR + ++ALPGG GTL EL V+ W
Sbjct: 61 GVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLALPGGVGTLAEL--VLAW 118
Query: 132 AQLGIHDKPVGLLNVDGYYNSLL 154
L + L VD Y+ LL
Sbjct: 119 NLLYLRRGVGRPLAVDPYWLGLL 141
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 35 ELGKELVSRNIDLVYGGGSIGLMGLVSQAV--HDGGRH----VIGVIPKTLMPRELTGET 88
E+G EL R +++ G G G A H R+ +G+ +++ E
Sbjct: 168 EVGHELGLRELNICTGCGPGAXEGPXKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPI 227
Query: 89 VGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKP-------- 140
V E+ D+ +R + + I PGG GT EELL + LGI P
Sbjct: 228 VNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI-----LGIXXHPENADQPXP 282
Query: 141 ---VGLLNVDGYYNSLLSFIDKAVEEG 164
G + Y+ SL FI + E
Sbjct: 283 IVLTGPKQSEAYFRSLDKFITDTLGEA 309
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 132 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT---VKELVKKLE 188
AQ D P G L VD S F DK EG I A+++++SAP K +V +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 189 --EYVPCHERVASK 200
EY P V S
Sbjct: 150 QHEYSPASHHVVSN 163
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 132 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT---VKELVKKLE 188
AQ D P G L VD S F DK EG I A+++++SAP K +V +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 189 --EYVPCHERVASK 200
EY P V S
Sbjct: 150 QHEYSPASHHVVSN 163
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 132 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT---VKELVKKLE 188
AQ D P G L V+ S F KA EG + AR++++SAP K LV +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 189 --EYVPCHERVASK 200
EY P V S
Sbjct: 150 HHEYNPSEHHVVSN 163
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 132 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT---VKELVKKLE 188
AQ D P G L V+ S F KA EG + AR++++SAP K LV +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 189 --EYVPCHERVASK 200
EY P V S
Sbjct: 150 HHEYNPSEHHVVSN 163
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 66 DGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEEL 125
+GGR+ +G+ ++ E V E+ + D+ +R + + + PGG GT EEL
Sbjct: 204 EGGRY-LGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEEL 262
Query: 126 LEVI 129
L ++
Sbjct: 263 LYLL 266
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 60 VSQAVHDGGRHVIGVIPK-TLMPRELTGETV--GEVKAVADMHQRKAEMAKHSDAFIALP 116
+SQ R IGV+P+ T++ + + + G V A D + A+ A DA +A P
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 117 GGYGT 121
GY T
Sbjct: 178 EGYRT 182
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 132 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178
AQ D P G L V+ S F K+ EG + AR++++SAP
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAP 136
>pdb|2IZ5|A Chain A, Function And Structure Of The Molybdenum Cofactor
Carrier Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|B Chain B, Function And Structure Of The Molybdenum Cofactor
Carrier Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|C Chain C, Function And Structure Of The Molybdenum Cofactor
Carrier Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|D Chain D, Function And Structure Of The Molybdenum Cofactor
Carrier Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ6|A Chain A, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ6|B Chain B, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ7|A Chain A, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
pdb|2IZ7|B Chain B, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
Length = 176
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 33 AIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIP 76
A ELGK++ + L+ GG S+G+M + + G IGV+P
Sbjct: 34 ANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGVLP 77
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 185 KKLEEYVPCHERVASKLNWEMEQLGYTQDYD 215
KK+E YV E+ SKL W +E L + +D
Sbjct: 211 KKVELYVFSEEKYVSKLQWALECLKKSMAFD 241
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 185 KKLEEYVPCHERVASKLNWEMEQLGYTQDYD 215
KK+E YV E+ SKL W +E L + +D
Sbjct: 212 KKVELYVFSEEKYVSKLQWALECLKKSMAFD 242
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 185 KKLEEYVPCHERVASKLNWEMEQLGYTQDYD 215
KK+E YV E+ SKL W +E L + +D
Sbjct: 212 KKVELYVFSEEKYVSKLQWALECLKKSMAFD 242
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 185 KKLEEYVPCHERVASKLNWEMEQLGYTQDYD 215
KK+E YV E+ SKL W +E L + +D
Sbjct: 211 KKVELYVFSEEKYVSKLQWALECLKKSMAFD 241
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 15/62 (24%)
Query: 121 TLEELLEVI-----TWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV 175
T +E E++ TW G+ + P LN F+ K E G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPASFLN----------FLFKVRESGSLSPEHGPVVV 213
Query: 176 SA 177
A
Sbjct: 214 HA 215
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 15/62 (24%)
Query: 121 TLEELLEVI-----TWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV 175
T +E E++ TW G+ + P LN F+ K E G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPASFLN----------FLFKVRESGSLSPEHGPVVV 213
Query: 176 SA 177
A
Sbjct: 214 HA 215
>pdb|3HHG|A Chain A, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|B Chain B, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|C Chain C, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|D Chain D, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|E Chain E, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|F Chain F, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|G Chain G, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|H Chain H, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis
Length = 306
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 154 LSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQD 213
L+ + VE G S +A Q+ ++ V +VK+LEE + + LN QL T++
Sbjct: 8 LTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLG-----VNLLNRTTRQLSLTEE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,665,795
Number of Sequences: 62578
Number of extensions: 285851
Number of successful extensions: 867
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 31
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)