Query 027662
Match_columns 220
No_of_seqs 152 out of 1185
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 6E-54 1.3E-58 357.4 21.2 178 13-190 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 9.5E-45 2.1E-49 308.0 20.2 184 9-193 11-198 (205)
3 TIGR00725 conserved hypothetic 100.0 2.7E-41 5.9E-46 276.7 18.9 157 12-187 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 2.1E-38 4.5E-43 252.3 15.0 131 57-187 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 3.4E-15 7.4E-20 128.3 16.5 155 13-186 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 8E-12 1.7E-16 106.8 13.4 144 11-164 43-206 (212)
7 PRK10736 hypothetical protein; 99.3 6.3E-11 1.4E-15 109.0 16.6 159 12-189 107-285 (374)
8 COG0758 Smf Predicted Rossmann 99.1 2.9E-09 6.3E-14 97.2 15.9 159 13-190 112-289 (350)
9 PF12694 MoCo_carrier: Putativ 96.6 0.029 6.2E-07 45.5 9.8 92 47-146 1-98 (145)
10 KOG3614 Ca2+/Mg2+-permeable ca 95.3 0.22 4.7E-06 52.5 11.8 154 14-171 120-328 (1381)
11 PF05014 Nuc_deoxyrib_tr: Nucl 94.6 0.068 1.5E-06 40.7 4.8 46 96-147 49-98 (113)
12 PF13528 Glyco_trans_1_3: Glyc 94.3 1.5 3.3E-05 38.3 13.4 122 43-189 192-316 (318)
13 PF06908 DUF1273: Protein of u 94.0 1.1 2.5E-05 37.3 11.2 132 12-146 1-168 (177)
14 COG3660 Predicted nucleoside-d 93.4 1.8 3.9E-05 38.9 11.8 58 105-171 241-299 (329)
15 PF06258 Mito_fiss_Elm1: Mitoc 92.2 8.3 0.00018 34.9 14.9 77 105-190 225-308 (311)
16 PF11071 DUF2872: Protein of u 92.1 1.9 4.1E-05 34.6 9.2 71 99-188 63-137 (141)
17 PF10686 DUF2493: Protein of u 91.2 2.2 4.9E-05 30.3 8.1 62 13-77 4-66 (71)
18 PRK10565 putative carbohydrate 91.2 1 2.2E-05 43.5 8.3 127 43-188 254-384 (508)
19 cd03785 GT1_MurG MurG is an N- 90.9 10 0.00023 33.2 15.6 77 100-192 244-323 (350)
20 TIGR01133 murG undecaprenyldip 90.9 10 0.00023 33.2 16.0 73 104-192 246-320 (348)
21 PLN02605 monogalactosyldiacylg 90.3 6.7 0.00015 35.7 12.5 72 101-192 275-346 (382)
22 COG0707 MurG UDP-N-acetylgluco 90.2 8.9 0.00019 35.4 13.3 80 95-192 239-323 (357)
23 cd03784 GT1_Gtf_like This fami 89.9 11 0.00023 34.1 13.5 72 104-192 300-371 (401)
24 PRK13609 diacylglycerol glucos 89.6 15 0.00033 33.0 14.5 75 97-192 262-337 (380)
25 TIGR00661 MJ1255 conserved hyp 88.9 15 0.00032 32.6 13.4 104 44-165 189-293 (321)
26 PRK13608 diacylglycerol glucos 88.7 8.3 0.00018 35.3 11.9 75 97-191 262-336 (391)
27 PRK13660 hypothetical protein; 88.5 13 0.00029 31.2 12.0 108 34-145 33-167 (182)
28 TIGR01426 MGT glycosyltransfer 87.9 14 0.0003 33.5 12.7 71 104-192 287-358 (392)
29 PRK12446 undecaprenyldiphospho 87.3 23 0.00049 32.2 13.8 73 104-191 248-323 (352)
30 TIGR03646 YtoQ_fam YtoQ family 87.3 14 0.0003 29.8 11.0 74 99-188 66-140 (144)
31 TIGR00215 lpxB lipid-A-disacch 86.3 20 0.00042 33.0 12.9 75 105-192 264-346 (385)
32 PRK00025 lpxB lipid-A-disaccha 85.8 6.3 0.00014 35.3 9.3 32 103-145 256-287 (380)
33 TIGR03590 PseG pseudaminic aci 84.2 14 0.0003 32.5 10.5 39 97-146 230-268 (279)
34 PF04101 Glyco_tran_28_C: Glyc 84.0 3 6.5E-05 33.2 5.7 34 103-146 67-100 (167)
35 KOG3349 Predicted glycosyltran 78.8 28 0.0006 28.9 9.4 124 11-166 2-129 (170)
36 TIGR00196 yjeF_cterm yjeF C-te 77.6 15 0.00032 32.0 8.3 44 101-148 85-128 (272)
37 COG1010 CobJ Precorrin-3B meth 77.4 32 0.0007 30.3 10.0 107 36-146 64-195 (249)
38 COG1597 LCB5 Sphingosine kinas 77.1 5 0.00011 36.0 5.2 45 32-77 46-91 (301)
39 COG2185 Sbm Methylmalonyl-CoA 74.4 9.2 0.0002 31.0 5.6 44 31-75 27-70 (143)
40 COG3613 Nucleoside 2-deoxyribo 73.0 29 0.00063 29.0 8.3 43 99-147 59-107 (172)
41 COG0063 Predicted sugar kinase 72.6 39 0.00084 30.3 9.7 131 42-188 31-168 (284)
42 COG4671 Predicted glycosyl tra 71.9 59 0.0013 30.5 10.8 81 97-192 283-364 (400)
43 COG1819 Glycosyl transferases, 71.1 31 0.00068 32.2 9.1 130 39-192 233-367 (406)
44 PRK05749 3-deoxy-D-manno-octul 70.9 85 0.0018 28.7 15.9 82 91-192 303-387 (425)
45 PRK08105 flavodoxin; Provision 70.3 5.8 0.00013 31.8 3.6 34 12-48 1-34 (149)
46 PRK06703 flavodoxin; Provision 69.2 53 0.0011 25.7 12.6 33 12-47 1-33 (151)
47 PRK00726 murG undecaprenyldiph 69.0 82 0.0018 27.8 14.9 81 96-193 240-324 (357)
48 PRK09004 FMN-binding protein M 68.7 5.8 0.00013 31.7 3.3 34 12-48 1-34 (146)
49 COG1832 Predicted CoA-binding 66.6 11 0.00024 30.5 4.3 34 11-49 15-48 (140)
50 PRK03501 ppnK inorganic polyph 65.8 54 0.0012 29.0 9.1 33 12-48 2-34 (264)
51 COG0716 FldA Flavodoxins [Ener 64.9 9.3 0.0002 30.3 3.8 34 12-48 1-34 (151)
52 PRK11914 diacylglycerol kinase 64.9 76 0.0017 28.0 10.0 37 9-46 5-41 (306)
53 PF13607 Succ_CoA_lig: Succiny 64.8 31 0.00066 27.5 6.7 86 44-147 3-90 (138)
54 PRK13337 putative lipid kinase 64.0 18 0.0004 32.0 5.9 43 34-77 47-91 (304)
55 KOG4022 Dihydropteridine reduc 63.6 44 0.00095 28.3 7.5 70 43-119 3-83 (236)
56 PRK06756 flavodoxin; Provision 62.8 12 0.00026 29.3 4.0 33 12-47 1-33 (148)
57 KOG2968 Predicted esterase of 61.8 5.5 0.00012 41.2 2.3 48 34-83 829-887 (1158)
58 cd07062 Peptidase_S66_mccF_lik 61.6 67 0.0015 28.7 9.1 93 14-142 2-99 (308)
59 COG1057 NadD Nicotinic acid mo 61.3 12 0.00025 31.8 3.9 34 11-44 1-34 (197)
60 PRK05723 flavodoxin; Provision 61.2 9.6 0.00021 30.7 3.2 33 13-48 1-33 (151)
61 PHA03392 egt ecdysteroid UDP-g 60.8 1.6E+02 0.0035 28.3 12.3 139 7-164 259-407 (507)
62 PRK13055 putative lipid kinase 60.8 21 0.00045 32.3 5.7 43 34-77 49-93 (334)
63 cd07025 Peptidase_S66 LD-Carbo 60.2 59 0.0013 28.7 8.4 44 98-142 47-95 (282)
64 PF00781 DAGK_cat: Diacylglyce 59.8 14 0.0003 28.3 3.9 43 34-77 43-90 (130)
65 TIGR01501 MthylAspMutase methy 59.4 89 0.0019 24.9 10.3 41 33-74 18-58 (134)
66 PRK00696 sucC succinyl-CoA syn 58.3 1.5E+02 0.0033 27.2 14.0 72 109-190 311-384 (388)
67 TIGR00060 L18_bact ribosomal p 56.5 30 0.00065 26.9 5.1 39 30-68 65-111 (114)
68 smart00046 DAGKc Diacylglycero 56.4 14 0.00031 28.4 3.3 32 112-145 52-85 (124)
69 PRK14569 D-alanyl-alanine synt 55.4 30 0.00065 30.5 5.7 38 12-49 3-40 (296)
70 PF00861 Ribosomal_L18p: Ribos 55.3 45 0.00097 25.8 6.0 40 30-69 70-117 (119)
71 PF01820 Dala_Dala_lig_N: D-al 54.8 14 0.0003 28.4 3.0 36 13-48 1-36 (117)
72 PF04127 DFP: DNA / pantothena 54.7 26 0.00057 29.2 4.9 66 45-115 20-89 (185)
73 COG0549 ArcC Carbamate kinase 54.2 33 0.00071 31.2 5.6 60 36-118 176-235 (312)
74 PRK02645 ppnK inorganic polyph 52.9 22 0.00047 32.1 4.4 106 11-164 2-116 (305)
75 PRK11914 diacylglycerol kinase 52.7 30 0.00066 30.6 5.3 44 32-77 52-96 (306)
76 TIGR03575 selen_PSTK_euk L-ser 52.1 63 0.0014 29.7 7.3 136 50-189 9-174 (340)
77 PRK09271 flavodoxin; Provision 51.6 20 0.00043 28.8 3.6 32 13-47 1-32 (160)
78 cd00411 Asparaginase Asparagin 51.2 43 0.00093 30.3 6.1 49 108-159 78-131 (323)
79 TIGR00519 asnASE_I L-asparagin 50.1 43 0.00094 30.6 5.9 51 106-159 75-130 (336)
80 cd03808 GT1_cap1E_like This fa 49.4 64 0.0014 27.0 6.6 72 102-192 257-328 (359)
81 cd03786 GT1_UDP-GlcNAc_2-Epime 49.2 1.8E+02 0.004 25.4 15.4 70 99-193 268-337 (363)
82 PRK00861 putative lipid kinase 48.9 33 0.00071 30.2 4.9 43 33-77 46-89 (300)
83 COG3573 Predicted oxidoreducta 48.6 48 0.001 31.3 5.9 74 45-126 141-234 (552)
84 TIGR03702 lip_kinase_YegS lipi 48.0 39 0.00085 29.7 5.2 44 33-77 41-88 (293)
85 cd06259 YdcF-like YdcF-like. Y 48.0 1E+02 0.0022 23.8 7.1 9 112-120 37-45 (150)
86 PRK06703 flavodoxin; Provision 46.7 47 0.001 26.0 5.0 14 60-73 105-118 (151)
87 cd03804 GT1_wbaZ_like This fam 46.4 1.2E+02 0.0026 26.4 8.1 73 100-193 253-326 (351)
88 PRK12361 hypothetical protein; 46.3 41 0.0009 32.5 5.5 43 33-77 286-329 (547)
89 PRK15494 era GTPase Era; Provi 46.2 2.2E+02 0.0047 25.8 9.9 86 106-195 129-219 (339)
90 PRK05568 flavodoxin; Provision 46.1 36 0.00077 26.2 4.2 32 12-46 1-32 (142)
91 TIGR00642 mmCoA_mut_beta methy 46.1 35 0.00076 34.0 5.0 43 13-59 547-589 (619)
92 TIGR00421 ubiX_pad polyprenyl 46.0 1E+02 0.0022 25.6 7.1 81 108-189 75-165 (181)
93 PRK13054 lipid kinase; Reviewe 45.8 45 0.00098 29.4 5.3 43 34-77 46-92 (300)
94 cd01171 YXKO-related B.subtili 45.5 68 0.0015 27.3 6.2 41 105-149 74-114 (254)
95 PLN02958 diacylglycerol kinase 45.4 45 0.00097 32.0 5.5 44 33-77 157-207 (481)
96 COG0300 DltE Short-chain dehyd 45.1 2.1E+02 0.0047 25.4 9.4 59 11-77 5-63 (265)
97 TIGR01007 eps_fam capsular exo 45.0 55 0.0012 26.8 5.4 37 9-48 14-50 (204)
98 cd03820 GT1_amsD_like This fam 45.0 1.4E+02 0.003 24.8 8.0 73 100-192 244-318 (348)
99 cd03795 GT1_like_4 This family 44.6 1.3E+02 0.0029 25.7 8.0 73 100-192 255-331 (357)
100 PRK06029 3-octaprenyl-4-hydrox 44.6 73 0.0016 26.7 6.0 81 108-189 78-168 (185)
101 PF09314 DUF1972: Domain of un 44.5 42 0.00092 28.2 4.6 38 12-50 1-41 (185)
102 PRK14077 pnk inorganic polypho 44.2 93 0.002 27.8 7.0 60 9-74 7-94 (287)
103 cd03825 GT1_wcfI_like This fam 44.0 1.3E+02 0.0028 25.8 7.9 71 101-192 257-329 (365)
104 PRK14572 D-alanyl-alanine synt 44.0 43 0.00093 30.3 4.9 39 12-50 1-39 (347)
105 PRK02155 ppnK NAD(+)/NADH kina 43.9 1.3E+02 0.0029 26.8 7.9 61 10-74 3-93 (291)
106 PRK04539 ppnK inorganic polyph 43.7 1.1E+02 0.0024 27.5 7.4 32 11-45 4-35 (296)
107 PF00781 DAGK_cat: Diacylglyce 43.5 34 0.00073 26.2 3.6 25 105-129 48-74 (130)
108 TIGR00640 acid_CoA_mut_C methy 43.4 83 0.0018 24.7 5.9 43 31-74 17-59 (132)
109 TIGR01754 flav_RNR ribonucleot 43.4 31 0.00067 26.8 3.5 31 14-47 2-32 (140)
110 PF13692 Glyco_trans_1_4: Glyc 43.4 1E+02 0.0023 22.7 6.3 70 101-191 63-133 (135)
111 KOG0832 Mitochondrial/chloropl 43.3 67 0.0015 28.3 5.7 47 26-72 90-136 (251)
112 PRK03378 ppnK inorganic polyph 42.3 1.4E+02 0.003 26.7 7.9 33 10-45 3-35 (292)
113 cd04180 UGPase_euk_like Eukary 42.1 80 0.0017 27.8 6.2 69 111-191 2-76 (266)
114 TIGR02690 resist_ArsH arsenica 41.9 55 0.0012 28.2 5.0 40 7-47 21-60 (219)
115 cd06353 PBP1_BmpA_Med_like Per 41.9 1.4E+02 0.003 25.8 7.6 42 31-75 166-207 (258)
116 PRK02649 ppnK inorganic polyph 41.5 1.2E+02 0.0026 27.4 7.3 33 12-47 1-33 (305)
117 COG0528 PyrH Uridylate kinase 41.3 64 0.0014 28.4 5.3 16 105-121 121-136 (238)
118 smart00046 DAGKc Diacylglycero 41.3 58 0.0013 24.9 4.7 31 46-77 52-86 (124)
119 PRK13057 putative lipid kinase 40.9 59 0.0013 28.5 5.2 43 33-77 40-82 (287)
120 KOG4175 Tryptophan synthase al 40.9 58 0.0013 28.3 4.9 33 121-156 78-110 (268)
121 CHL00139 rpl18 ribosomal prote 40.8 67 0.0015 24.7 4.8 38 31-68 61-106 (109)
122 COG0593 DnaA ATPase involved i 40.5 1.2E+02 0.0027 28.6 7.5 102 31-143 96-213 (408)
123 PF13614 AAA_31: AAA domain; P 40.4 62 0.0013 24.9 4.8 33 13-48 1-33 (157)
124 cd03794 GT1_wbuB_like This fam 40.3 1.4E+02 0.0031 25.1 7.4 73 100-191 286-363 (394)
125 COG0150 PurM Phosphoribosylami 40.2 1.5E+02 0.0032 27.5 7.7 93 31-127 114-222 (345)
126 PRK02645 ppnK inorganic polyph 40.1 1.5E+02 0.0032 26.7 7.7 28 46-74 60-87 (305)
127 COG3967 DltE Short-chain dehyd 40.1 36 0.00078 29.7 3.5 26 46-72 8-33 (245)
128 PF03358 FMN_red: NADPH-depend 40.0 59 0.0013 25.1 4.6 34 13-47 1-34 (152)
129 PRK09267 flavodoxin FldA; Vali 40.0 31 0.00068 27.6 3.1 27 12-41 1-27 (169)
130 PRK13937 phosphoheptose isomer 40.0 90 0.0019 25.7 5.9 31 26-56 21-51 (188)
131 PRK05333 NAD-dependent deacety 39.9 80 0.0017 28.0 5.9 73 99-192 205-278 (285)
132 PRK07308 flavodoxin; Validated 39.9 38 0.00082 26.5 3.5 31 13-46 2-32 (146)
133 PF12831 FAD_oxidored: FAD dep 39.8 29 0.00063 32.3 3.2 30 46-77 2-31 (428)
134 PRK09922 UDP-D-galactose:(gluc 39.6 1.9E+02 0.0041 25.6 8.4 75 99-194 248-325 (359)
135 cd03801 GT1_YqgM_like This fam 39.5 92 0.002 25.9 6.0 69 102-191 269-339 (374)
136 PRK08887 nicotinic acid mononu 39.5 38 0.00081 27.8 3.5 24 12-35 1-24 (174)
137 cd04951 GT1_WbdM_like This fam 39.2 1.3E+02 0.0029 25.7 7.1 68 103-191 257-324 (360)
138 cd04728 ThiG Thiazole synthase 39.2 2.7E+02 0.006 24.6 13.1 108 6-130 87-195 (248)
139 TIGR02153 gatD_arch glutamyl-t 39.1 78 0.0017 29.8 5.9 49 109-159 140-193 (404)
140 PF01256 Carb_kinase: Carbohyd 39.1 2.2E+02 0.0047 24.7 8.4 126 47-190 2-134 (242)
141 PF04412 DUF521: Protein of un 39.0 3.4E+02 0.0074 25.6 14.0 150 11-164 180-348 (400)
142 PRK08862 short chain dehydroge 39.0 1.5E+02 0.0032 24.8 7.2 54 13-74 6-59 (227)
143 COG0148 Eno Enolase [Carbohydr 39.0 1.1E+02 0.0024 29.0 6.8 68 100-169 319-387 (423)
144 TIGR00436 era GTP-binding prot 39.0 2.6E+02 0.0055 24.2 9.6 84 105-195 76-167 (270)
145 PRK01372 ddl D-alanine--D-alan 38.7 55 0.0012 28.5 4.7 38 13-50 5-42 (304)
146 PRK01966 ddl D-alanyl-alanine 38.4 60 0.0013 29.2 4.9 37 12-48 3-39 (333)
147 COG3199 Predicted inorganic po 38.3 3.4E+02 0.0073 25.3 9.9 79 45-144 51-129 (355)
148 COG2085 Predicted dinucleotide 38.3 72 0.0016 27.5 5.1 52 12-74 1-52 (211)
149 PRK14571 D-alanyl-alanine synt 38.2 65 0.0014 28.2 5.1 36 14-49 2-37 (299)
150 TIGR00147 lipid kinase, YegS/R 38.2 86 0.0019 27.3 5.8 31 46-77 60-91 (293)
151 PRK12359 flavodoxin FldB; Prov 37.9 81 0.0018 26.0 5.2 23 58-80 102-124 (172)
152 PF00106 adh_short: short chai 37.9 55 0.0012 25.2 4.1 29 46-75 3-31 (167)
153 PF02608 Bmp: Basic membrane p 37.8 56 0.0012 29.0 4.6 56 14-75 163-220 (306)
154 PF00534 Glycos_transf_1: Glyc 37.6 1.1E+02 0.0024 23.6 5.8 73 99-192 83-157 (172)
155 cd07227 Pat_Fungal_NTE1 Fungal 37.6 25 0.00054 31.2 2.3 29 36-66 2-30 (269)
156 PF05159 Capsule_synth: Capsul 37.5 32 0.0007 29.7 2.9 37 104-152 195-231 (269)
157 cd03818 GT1_ExpC_like This fam 37.4 1.5E+02 0.0032 26.7 7.4 72 100-192 292-365 (396)
158 PRK06443 chorismate mutase; Va 37.2 58 0.0013 27.3 4.2 45 28-76 91-135 (177)
159 PRK00208 thiG thiazole synthas 37.1 3E+02 0.0065 24.4 13.3 109 6-131 87-196 (250)
160 COG2081 Predicted flavoprotein 37.1 33 0.00071 32.4 3.0 27 46-74 6-32 (408)
161 PRK14568 vanB D-alanine--D-lac 36.8 57 0.0012 29.4 4.5 37 12-48 3-39 (343)
162 cd03799 GT1_amsK_like This is 36.6 1.6E+02 0.0034 25.2 7.1 74 100-192 247-326 (355)
163 cd02201 FtsZ_type1 FtsZ is a G 36.6 2.2E+02 0.0048 25.3 8.3 72 37-116 79-154 (304)
164 KOG2683 Sirtuin 4 and related 36.3 42 0.0009 29.8 3.4 40 105-147 243-282 (305)
165 PRK15484 lipopolysaccharide 1, 36.1 1.9E+02 0.004 26.2 7.8 72 100-192 268-343 (380)
166 TIGR01182 eda Entner-Doudoroff 36.0 1.8E+02 0.004 24.7 7.3 109 12-131 8-120 (204)
167 cd07225 Pat_PNPLA6_PNPLA7 Pata 35.9 37 0.0008 30.6 3.1 31 34-66 5-35 (306)
168 PRK09461 ansA cytoplasmic aspa 35.7 1.1E+02 0.0023 28.0 6.1 52 107-160 80-136 (335)
169 PTZ00032 60S ribosomal protein 35.6 70 0.0015 27.5 4.5 39 30-68 162-208 (211)
170 TIGR03088 stp2 sugar transfera 35.1 1.4E+02 0.003 26.4 6.7 69 103-192 267-337 (374)
171 PRK04183 glutamyl-tRNA(Gln) am 34.9 1E+02 0.0023 29.2 6.1 48 109-159 153-205 (419)
172 cd00432 Ribosomal_L18_L5e Ribo 34.8 80 0.0017 23.5 4.4 38 31-68 57-102 (103)
173 PRK06756 flavodoxin; Provision 34.5 96 0.0021 24.1 5.0 17 57-73 103-119 (148)
174 PF14359 DUF4406: Domain of un 34.4 87 0.0019 23.1 4.4 31 99-129 50-83 (92)
175 PRK01231 ppnK inorganic polyph 34.3 2.1E+02 0.0045 25.7 7.6 31 11-44 3-33 (295)
176 PF02571 CbiJ: Precorrin-6x re 34.3 3.2E+02 0.0069 23.9 11.2 113 44-189 131-249 (249)
177 PRK02649 ppnK inorganic polyph 34.0 91 0.002 28.2 5.3 53 107-165 67-126 (305)
178 PRK13059 putative lipid kinase 34.0 1E+02 0.0023 27.1 5.7 33 108-144 56-88 (295)
179 CHL00200 trpA tryptophan synth 34.0 2.1E+02 0.0045 25.3 7.5 40 121-164 75-119 (263)
180 COG0394 Wzb Protein-tyrosine-p 33.8 1.3E+02 0.0028 23.8 5.7 36 12-51 2-37 (139)
181 PRK04885 ppnK inorganic polyph 33.7 2.3E+02 0.005 25.0 7.8 56 13-74 1-67 (265)
182 PRK09536 btuD corrinoid ABC tr 33.7 90 0.002 29.2 5.4 73 55-127 277-357 (402)
183 cd03822 GT1_ecORF704_like This 33.7 1.5E+02 0.0032 25.2 6.5 70 100-192 259-333 (366)
184 TIGR03449 mycothiol_MshA UDP-N 33.6 1.6E+02 0.0035 26.3 7.0 72 100-192 294-367 (405)
185 PRK05569 flavodoxin; Provision 33.5 57 0.0012 25.0 3.5 29 137-165 82-112 (141)
186 PRK08105 flavodoxin; Provision 33.2 87 0.0019 24.9 4.6 42 32-74 67-121 (149)
187 PRK09355 hydroxyethylthiazole 33.2 2E+02 0.0043 25.0 7.3 41 105-149 51-94 (263)
188 PRK05593 rplR 50S ribosomal pr 33.1 1E+02 0.0022 24.0 4.8 38 31-68 69-114 (117)
189 PRK10494 hypothetical protein; 32.6 1.8E+02 0.0038 25.5 6.8 11 109-119 79-89 (259)
190 TIGR01205 D_ala_D_alaTIGR D-al 32.4 62 0.0013 28.3 4.0 39 14-52 1-39 (315)
191 COG0062 Uncharacterized conser 32.2 58 0.0012 27.9 3.5 40 105-146 116-159 (203)
192 KOG1201 Hydroxysteroid 17-beta 32.2 55 0.0012 29.7 3.6 27 43-70 38-64 (300)
193 COG0794 GutQ Predicted sugar p 32.2 3.2E+02 0.007 23.3 8.6 23 38-60 33-56 (202)
194 cd03812 GT1_CapH_like This fam 32.0 1.8E+02 0.0039 25.0 6.8 70 102-193 260-331 (358)
195 PRK13146 hisH imidazole glycer 31.9 1.2E+02 0.0026 25.5 5.5 9 66-74 75-83 (209)
196 PF13380 CoA_binding_2: CoA bi 31.7 91 0.002 23.7 4.3 31 13-48 1-31 (116)
197 cd03814 GT1_like_2 This family 31.3 1.4E+02 0.003 25.3 5.9 69 102-192 260-331 (364)
198 COG0163 UbiX 3-polyprenyl-4-hy 31.1 1.1E+02 0.0024 26.0 4.9 81 109-189 81-170 (191)
199 PF04230 PS_pyruv_trans: Polys 31.0 70 0.0015 26.1 3.9 41 107-147 62-108 (286)
200 PRK07313 phosphopantothenoylcy 31.0 2.3E+02 0.0049 23.5 6.9 88 105-193 74-180 (182)
201 cd01408 SIRT1 SIRT1: Eukaryoti 30.9 1.2E+02 0.0025 26.2 5.3 70 99-187 166-235 (235)
202 PRK03372 ppnK inorganic polyph 30.4 2.9E+02 0.0063 25.0 8.0 33 10-45 3-35 (306)
203 PRK14077 pnk inorganic polypho 30.4 1.3E+02 0.0028 26.9 5.7 52 108-165 64-122 (287)
204 CHL00175 minD septum-site dete 30.3 1.1E+02 0.0024 26.4 5.1 40 6-48 9-48 (281)
205 TIGR03371 cellulose_yhjQ cellu 30.0 1.1E+02 0.0023 25.6 4.9 34 12-48 1-34 (246)
206 cd00587 HCP_like The HCP famil 29.9 95 0.0021 27.6 4.6 153 8-187 90-257 (258)
207 cd03819 GT1_WavL_like This fam 29.9 1.2E+02 0.0027 26.0 5.4 69 102-191 257-328 (355)
208 PRK09004 FMN-binding protein M 29.7 1.1E+02 0.0025 24.1 4.8 9 65-73 110-118 (146)
209 cd05844 GT1_like_7 Glycosyltra 29.5 2.2E+02 0.0047 24.7 6.9 69 102-192 258-335 (367)
210 PRK06015 keto-hydroxyglutarate 29.5 3.2E+02 0.007 23.2 7.7 108 12-130 4-115 (201)
211 PRK09250 fructose-bisphosphate 29.3 4.7E+02 0.01 24.3 10.8 110 14-128 164-300 (348)
212 cd02072 Glm_B12_BD B12 binding 29.2 2.9E+02 0.0062 21.8 10.0 40 34-74 17-56 (128)
213 PF11834 DUF3354: Domain of un 29.1 1.3E+02 0.0028 21.3 4.3 33 110-148 19-51 (69)
214 PRK13059 putative lipid kinase 29.0 1.3E+02 0.0027 26.6 5.3 38 39-77 51-90 (295)
215 COG0112 GlyA Glycine/serine hy 28.9 51 0.0011 31.2 2.9 41 31-71 291-341 (413)
216 cd03800 GT1_Sucrose_synthase T 28.9 1.2E+02 0.0026 26.5 5.3 70 102-192 296-367 (398)
217 TIGR01753 flav_short flavodoxi 28.9 1.3E+02 0.0029 22.6 4.9 13 61-73 103-115 (140)
218 PF04016 DUF364: Domain of unk 28.9 83 0.0018 25.1 3.8 76 99-189 53-130 (147)
219 PF09152 DUF1937: Domain of un 28.7 68 0.0015 25.1 3.1 39 100-144 71-114 (116)
220 PRK11921 metallo-beta-lactamas 28.7 4.6E+02 0.01 24.1 13.9 82 107-189 299-384 (394)
221 PRK03708 ppnK inorganic polyph 28.6 2.8E+02 0.006 24.6 7.4 26 47-74 61-86 (277)
222 TIGR00936 ahcY adenosylhomocys 28.5 1.5E+02 0.0033 27.9 6.0 69 46-124 198-266 (406)
223 PRK06973 nicotinic acid mononu 28.5 88 0.0019 27.3 4.2 32 11-42 20-51 (243)
224 PRK09330 cell division protein 28.3 2.9E+02 0.0063 25.9 7.8 54 55-116 114-167 (384)
225 KOG3974 Predicted sugar kinase 28.2 3.9E+02 0.0084 24.2 8.1 48 100-150 93-143 (306)
226 PRK15454 ethanol dehydrogenase 28.1 1.7E+02 0.0036 27.3 6.2 13 107-119 105-117 (395)
227 PRK11780 isoprenoid biosynthes 28.0 64 0.0014 27.6 3.2 39 12-51 1-40 (217)
228 PRK10953 cysJ sulfite reductas 28.0 1E+02 0.0023 30.5 5.0 75 137-213 452-531 (600)
229 PLN02591 tryptophan synthase 28.0 1.5E+02 0.0033 26.0 5.6 41 121-165 62-107 (250)
230 COG0703 AroK Shikimate kinase 27.8 2.1E+02 0.0046 23.8 6.1 81 37-119 66-155 (172)
231 PRK09124 pyruvate dehydrogenas 27.8 5.6E+02 0.012 24.7 12.2 17 104-120 261-277 (574)
232 PRK07308 flavodoxin; Validated 27.7 1.1E+02 0.0025 23.6 4.4 17 57-73 102-118 (146)
233 PLN02271 serine hydroxymethylt 27.6 59 0.0013 32.3 3.2 39 32-70 443-491 (586)
234 cd03807 GT1_WbnK_like This fam 27.5 1.5E+02 0.0033 24.8 5.5 67 104-192 264-331 (365)
235 PTZ00075 Adenosylhomocysteinas 27.4 2.9E+02 0.0063 26.8 7.7 88 47-152 258-346 (476)
236 PRK14138 NAD-dependent deacety 27.3 1.8E+02 0.0038 25.2 5.9 71 99-191 169-241 (244)
237 COG1063 Tdh Threonine dehydrog 27.3 1.1E+02 0.0024 27.8 4.7 29 44-74 170-199 (350)
238 PF03492 Methyltransf_7: SAM d 27.1 68 0.0015 29.2 3.4 42 148-189 198-242 (334)
239 PF09848 DUF2075: Uncharacteri 27.0 4.7E+02 0.01 23.6 15.1 101 104-206 113-231 (352)
240 KOG1718 Dual specificity phosp 27.0 62 0.0013 27.4 2.7 53 107-160 93-155 (198)
241 PRK12462 phosphoserine aminotr 26.8 1E+02 0.0023 28.5 4.5 69 3-74 23-98 (364)
242 cd04949 GT1_gtfA_like This fam 26.6 2.4E+02 0.0052 24.7 6.8 69 105-193 275-345 (372)
243 TIGR00236 wecB UDP-N-acetylglu 26.4 2.9E+02 0.0063 24.5 7.3 67 101-192 267-333 (365)
244 cd08184 Fe-ADH3 Iron-containin 26.4 3.9E+02 0.0085 24.4 8.2 12 108-119 81-92 (347)
245 TIGR00521 coaBC_dfp phosphopan 26.3 4.8E+02 0.01 24.4 8.9 47 29-75 166-232 (390)
246 KOG1014 17 beta-hydroxysteroid 26.2 94 0.002 28.4 4.0 52 8-66 44-95 (312)
247 cd08185 Fe-ADH1 Iron-containin 26.1 2.1E+02 0.0045 26.2 6.4 13 107-119 82-94 (380)
248 PF14947 HTH_45: Winged helix- 26.1 91 0.002 21.9 3.2 41 149-190 32-72 (77)
249 PRK07677 short chain dehydroge 26.1 1.1E+02 0.0024 25.5 4.3 30 13-50 2-31 (252)
250 TIGR03702 lip_kinase_YegS lipi 26.1 1.8E+02 0.004 25.4 5.9 32 112-145 55-87 (293)
251 TIGR01369 CPSaseII_lrg carbamo 26.0 8.1E+02 0.018 26.0 11.4 16 174-189 178-193 (1050)
252 PF01965 DJ-1_PfpI: DJ-1/PfpI 26.0 46 0.001 26.0 1.8 35 112-146 40-79 (147)
253 PLN02275 transferase, transfer 25.9 4.8E+02 0.01 23.3 8.8 71 99-190 297-370 (371)
254 COG2022 ThiG Uncharacterized e 25.8 4.7E+02 0.01 23.2 11.0 110 5-132 93-204 (262)
255 cd03798 GT1_wlbH_like This fam 25.8 2E+02 0.0044 23.9 5.9 73 100-193 270-344 (377)
256 PF03975 CheD: CheD chemotacti 25.8 1.5E+02 0.0034 22.5 4.7 41 8-48 35-81 (114)
257 PRK07890 short chain dehydroge 25.7 3.1E+02 0.0067 22.6 7.0 54 13-74 6-59 (258)
258 PRK03767 NAD(P)H:quinone oxido 25.7 92 0.002 25.8 3.7 33 12-47 1-34 (200)
259 PRK10037 cell division protein 25.5 1.4E+02 0.0031 25.3 4.9 34 12-48 1-34 (250)
260 PF10727 Rossmann-like: Rossma 25.4 97 0.0021 24.3 3.5 31 9-48 7-37 (127)
261 cd04261 AAK_AKii-LysC-BS AAK_A 25.3 1.8E+02 0.0039 24.7 5.5 38 18-57 6-45 (239)
262 TIGR01016 sucCoAbeta succinyl- 25.3 5.3E+02 0.011 23.6 13.1 71 109-189 311-383 (386)
263 PLN02871 UDP-sulfoquinovose:DA 25.3 2.7E+02 0.0058 25.9 7.1 75 100-192 323-399 (465)
264 PRK03708 ppnK inorganic polyph 25.2 1.5E+02 0.0032 26.3 5.1 35 13-50 1-35 (277)
265 PRK07102 short chain dehydroge 25.2 1.1E+02 0.0023 25.4 4.0 31 12-50 1-31 (243)
266 cd06424 UGGPase UGGPase cataly 25.1 1.4E+02 0.003 27.2 5.0 11 111-121 2-12 (315)
267 PRK00071 nadD nicotinic acid m 25.1 1.1E+02 0.0023 25.5 4.0 26 12-37 3-28 (203)
268 cd04260 AAK_AKi-DapG-BS AAK_AK 24.9 88 0.0019 26.9 3.5 25 18-42 6-30 (244)
269 PRK05867 short chain dehydroge 24.9 3.5E+02 0.0076 22.4 7.2 54 13-74 10-63 (253)
270 PF09353 DUF1995: Domain of un 24.8 4.1E+02 0.0089 22.1 10.2 38 109-152 98-135 (209)
271 PRK14075 pnk inorganic polypho 24.8 2.8E+02 0.0062 24.1 6.7 52 13-74 1-68 (256)
272 PRK12359 flavodoxin FldB; Prov 24.7 63 0.0014 26.7 2.4 25 13-40 1-25 (172)
273 COG0794 GutQ Predicted sugar p 24.7 4.4E+02 0.0096 22.5 10.4 38 105-145 83-120 (202)
274 PLN02586 probable cinnamyl alc 24.7 2.1E+02 0.0046 25.7 6.1 30 45-76 186-215 (360)
275 PRK05854 short chain dehydroge 24.6 1.1E+02 0.0024 26.9 4.2 32 12-51 14-45 (313)
276 cd04193 UDPGlcNAc_PPase UDPGlc 24.6 2.9E+02 0.0062 25.1 6.9 76 103-189 8-93 (323)
277 PRK07998 gatY putative fructos 24.6 5.1E+02 0.011 23.2 10.0 36 99-136 188-223 (283)
278 PRK05476 S-adenosyl-L-homocyst 24.5 1.7E+02 0.0038 27.7 5.6 87 46-150 215-302 (425)
279 cd01882 BMS1 Bms1. Bms1 is an 24.5 4.3E+02 0.0092 22.2 11.9 101 102-211 97-213 (225)
280 PRK09860 putative alcohol dehy 24.5 1.4E+02 0.003 27.6 4.9 13 107-119 87-99 (383)
281 PRK05718 keto-hydroxyglutarate 24.5 3E+02 0.0065 23.4 6.7 55 13-74 16-71 (212)
282 KOG2467 Glycine/serine hydroxy 24.4 75 0.0016 30.1 3.1 36 32-67 329-374 (477)
283 cd01412 SIRT5_Af1_CobB SIRT5_A 24.4 2.7E+02 0.0058 23.4 6.4 67 100-187 156-223 (224)
284 PRK05866 short chain dehydroge 24.3 2.8E+02 0.0061 24.1 6.7 32 13-52 41-72 (293)
285 TIGR01832 kduD 2-deoxy-D-gluco 24.3 1.2E+02 0.0026 25.0 4.2 30 13-50 6-35 (248)
286 PLN02945 nicotinamide-nucleoti 24.2 1.8E+02 0.0039 25.0 5.3 40 9-48 18-57 (236)
287 PRK05565 fabG 3-ketoacyl-(acyl 24.2 3.9E+02 0.0084 21.6 8.6 32 11-50 4-35 (247)
288 PRK04155 chaperone protein Hch 24.2 73 0.0016 28.5 2.9 34 111-144 149-186 (287)
289 PLN02494 adenosylhomocysteinas 24.2 2.7E+02 0.0058 27.0 6.8 73 45-127 256-329 (477)
290 cd01170 THZ_kinase 4-methyl-5- 24.1 2E+02 0.0043 24.7 5.6 77 45-147 8-87 (242)
291 PRK00625 shikimate kinase; Pro 24.1 2.8E+02 0.006 22.6 6.2 78 35-115 65-149 (173)
292 cd02040 NifH NifH gene encodes 24.1 1.5E+02 0.0033 25.0 4.9 33 12-48 1-33 (270)
293 PRK13054 lipid kinase; Reviewe 23.9 2.1E+02 0.0046 25.1 5.9 34 109-144 57-90 (300)
294 cd03823 GT1_ExpE7_like This fa 23.9 2.6E+02 0.0057 23.4 6.3 72 100-192 254-328 (359)
295 PRK01231 ppnK inorganic polyph 23.9 1.8E+02 0.0039 26.1 5.4 34 108-147 62-95 (295)
296 PRK08979 acetolactate synthase 23.8 4.4E+02 0.0094 25.5 8.4 82 32-121 195-285 (572)
297 PRK00414 gmhA phosphoheptose i 23.8 3.9E+02 0.0084 22.1 7.1 30 27-56 28-57 (192)
298 PF00890 FAD_binding_2: FAD bi 23.8 68 0.0015 29.2 2.7 28 46-75 2-29 (417)
299 PRK10834 vancomycin high tempe 23.8 2.9E+02 0.0063 24.2 6.5 10 109-118 45-54 (239)
300 cd03816 GT1_ALG1_like This fam 23.7 5.5E+02 0.012 23.5 8.8 73 99-192 305-380 (415)
301 TIGR01127 ilvA_1Cterm threonin 23.7 4E+02 0.0086 24.3 7.8 21 110-130 307-327 (380)
302 PRK08264 short chain dehydroge 23.6 4E+02 0.0087 21.6 7.7 29 45-74 8-37 (238)
303 cd00408 DHDPS-like Dihydrodipi 23.6 4.2E+02 0.0091 22.8 7.6 69 12-81 32-105 (281)
304 COG2242 CobL Precorrin-6B meth 23.5 1.2E+02 0.0025 25.8 3.8 124 32-165 23-153 (187)
305 PRK03372 ppnK inorganic polyph 23.5 1.9E+02 0.0041 26.2 5.4 54 106-165 70-130 (306)
306 cd03821 GT1_Bme6_like This fam 23.5 3.2E+02 0.007 22.8 6.8 69 101-192 274-344 (375)
307 TIGR01752 flav_long flavodoxin 23.4 2.2E+02 0.0048 22.8 5.4 21 57-77 100-120 (167)
308 PRK07023 short chain dehydroge 23.4 1.4E+02 0.0031 24.6 4.4 30 12-49 1-30 (243)
309 PF12965 DUF3854: Domain of un 23.4 2.8E+02 0.006 21.8 5.8 49 13-62 69-124 (130)
310 PRK15427 colanic acid biosynth 23.4 3.6E+02 0.0079 24.7 7.5 71 103-192 293-369 (406)
311 PRK06180 short chain dehydroge 23.3 1.2E+02 0.0026 25.8 4.1 32 12-51 4-35 (277)
312 PRK07454 short chain dehydroge 23.3 3.9E+02 0.0084 21.8 7.1 57 10-74 4-60 (241)
313 PRK07832 short chain dehydroge 23.3 3.1E+02 0.0067 23.1 6.6 87 13-117 1-87 (272)
314 PRK06924 short chain dehydroge 23.2 1.2E+02 0.0027 25.0 4.1 29 12-48 1-29 (251)
315 TIGR03282 methan_mark_13 putat 23.1 3.1E+02 0.0066 25.6 6.7 31 46-77 54-84 (352)
316 PF01202 SKI: Shikimate kinase 23.1 1.6E+02 0.0034 23.2 4.4 38 35-74 53-91 (158)
317 PRK07109 short chain dehydroge 22.9 3.2E+02 0.007 24.3 6.9 55 12-74 8-62 (334)
318 PRK07035 short chain dehydroge 22.9 1.2E+02 0.0027 25.1 4.0 30 13-50 9-38 (252)
319 PLN03050 pyridoxine (pyridoxam 22.9 1.4E+02 0.003 26.1 4.3 30 13-47 61-90 (246)
320 PRK09496 trkA potassium transp 22.8 2.7E+02 0.0058 25.7 6.5 89 29-119 217-308 (453)
321 PTZ00187 succinyl-CoA syntheta 22.7 5.6E+02 0.012 23.4 8.4 90 96-191 210-313 (317)
322 PRK12422 chromosomal replicati 22.7 2.9E+02 0.0062 26.2 6.8 105 31-144 120-241 (445)
323 KOG1209 1-Acyl dihydroxyaceton 22.6 2.3E+02 0.0051 25.1 5.6 52 1-64 1-52 (289)
324 COG3980 spsG Spore coat polysa 22.6 1.5E+02 0.0033 27.1 4.5 41 13-53 1-41 (318)
325 PRK08339 short chain dehydroge 22.6 1.4E+02 0.003 25.4 4.3 17 34-50 22-38 (263)
326 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.6 2.6E+02 0.0057 21.1 5.6 91 33-146 3-97 (153)
327 PRK06552 keto-hydroxyglutarate 22.5 4.8E+02 0.01 22.1 7.9 54 13-74 14-72 (213)
328 PRK14046 malate--CoA ligase su 22.5 6.3E+02 0.014 23.5 14.6 120 44-190 257-384 (392)
329 KOG1207 Diacetyl reductase/L-x 22.4 1.1E+02 0.0024 26.3 3.4 30 45-75 9-38 (245)
330 PRK12367 short chain dehydroge 22.4 1.3E+02 0.0028 25.6 4.1 29 45-74 16-44 (245)
331 PRK06300 enoyl-(acyl carrier p 22.3 1.2E+02 0.0026 27.0 3.9 18 33-50 23-40 (299)
332 PF03853 YjeF_N: YjeF-related 22.3 64 0.0014 26.2 2.0 35 10-49 23-57 (169)
333 cd03132 GATase1_catalase Type 22.1 2.4E+02 0.0052 21.5 5.2 36 110-146 64-103 (142)
334 PRK06849 hypothetical protein; 22.1 5.2E+02 0.011 23.4 8.2 33 12-52 4-36 (389)
335 cd02028 UMPK_like Uridine mono 22.0 2.3E+02 0.005 23.0 5.3 63 137-208 26-88 (179)
336 PRK13111 trpA tryptophan synth 22.0 2.3E+02 0.005 24.9 5.6 42 121-165 72-118 (258)
337 PRK09880 L-idonate 5-dehydroge 22.0 2.5E+02 0.0054 24.8 6.0 30 44-75 171-201 (343)
338 cd00952 CHBPH_aldolase Trans-o 21.9 4.8E+02 0.01 23.2 7.8 67 12-79 43-114 (309)
339 PF05690 ThiG: Thiazole biosyn 21.8 61 0.0013 28.6 1.9 116 9-146 90-205 (247)
340 cd01411 SIR2H SIR2H: Uncharact 21.8 1.2E+02 0.0026 25.8 3.7 46 99-148 162-207 (225)
341 PF14953 DUF4504: Domain of un 21.8 2E+02 0.0043 25.5 5.2 54 138-192 32-96 (270)
342 COG0159 TrpA Tryptophan syntha 21.7 4.8E+02 0.01 23.3 7.5 64 116-189 73-141 (265)
343 PF07287 DUF1446: Protein of u 21.7 2.3E+02 0.0051 26.3 5.8 55 23-77 50-108 (362)
344 PRK09291 short chain dehydroge 21.7 1.4E+02 0.0031 24.7 4.1 31 13-51 3-33 (257)
345 cd03133 GATase1_ES1 Type 1 glu 21.6 1.1E+02 0.0023 26.2 3.4 11 112-122 85-95 (213)
346 CHL00162 thiG thiamin biosynth 21.6 1E+02 0.0022 27.6 3.2 30 102-131 181-210 (267)
347 COG2515 Acd 1-aminocyclopropan 21.6 3E+02 0.0064 25.3 6.2 43 107-152 179-221 (323)
348 cd00453 FTBP_aldolase_II Fruct 21.4 6.6E+02 0.014 23.3 9.3 20 110-129 242-261 (340)
349 cd08191 HHD 6-hydroxyhexanoate 21.4 2.3E+02 0.005 26.0 5.8 13 107-119 78-90 (386)
350 PRK07775 short chain dehydroge 21.4 4.4E+02 0.0095 22.3 7.2 34 10-51 8-41 (274)
351 TIGR03018 pepcterm_TyrKin exop 21.4 2.3E+02 0.005 23.3 5.3 35 11-48 34-69 (207)
352 TIGR00715 precor6x_red precorr 21.4 3.8E+02 0.0082 23.5 6.8 17 175-191 239-255 (256)
353 cd03805 GT1_ALG2_like This fam 21.2 5E+02 0.011 22.8 7.8 69 102-192 293-363 (392)
354 PRK03170 dihydrodipicolinate s 21.2 5.6E+02 0.012 22.3 8.6 68 12-80 36-108 (292)
355 PF03205 MobB: Molybdopterin g 21.2 1.3E+02 0.0028 23.7 3.5 32 13-48 1-32 (140)
356 PF03486 HI0933_like: HI0933-l 21.2 64 0.0014 30.3 2.0 26 46-73 3-28 (409)
357 PRK13057 putative lipid kinase 21.1 86 0.0019 27.4 2.7 32 108-145 50-81 (287)
358 PRK08217 fabG 3-ketoacyl-(acyl 21.1 1.5E+02 0.0032 24.4 4.0 30 13-50 6-35 (253)
359 TIGR01915 npdG NADPH-dependent 20.9 1.9E+02 0.004 24.2 4.7 31 13-51 1-31 (219)
360 cd04962 GT1_like_5 This family 20.9 4.1E+02 0.0088 22.9 7.0 68 103-191 265-334 (371)
361 PLN02448 UDP-glycosyltransfera 20.9 7.1E+02 0.015 23.4 9.2 32 105-145 336-368 (459)
362 COG0206 FtsZ Cell division GTP 20.8 6.4E+02 0.014 23.3 8.4 83 27-117 76-166 (338)
363 PRK14573 bifunctional D-alanyl 20.8 1.5E+02 0.0033 30.1 4.8 37 12-48 451-487 (809)
364 PRK11104 hemG protoporphyrinog 20.8 98 0.0021 25.3 2.9 30 14-47 2-31 (177)
365 TIGR03151 enACPred_II putative 20.8 5.8E+02 0.013 22.8 8.1 92 36-130 79-181 (307)
366 PRK07152 nadD putative nicotin 20.8 1.3E+02 0.0028 27.3 3.9 29 13-41 1-29 (342)
367 PF01985 CRS1_YhbY: CRS1 / Yhb 20.7 96 0.0021 22.3 2.5 50 135-190 13-67 (84)
368 COG1763 MobB Molybdopterin-gua 20.7 2E+02 0.0043 23.6 4.6 32 12-47 2-33 (161)
369 PRK00207 sulfur transfer compl 20.6 2.3E+02 0.0051 22.0 4.9 33 14-47 2-34 (128)
370 KOG0503 Asparaginase [Amino ac 20.6 1.6E+02 0.0035 27.5 4.4 37 107-146 120-156 (368)
371 PRK00170 azoreductase; Reviewe 20.6 2.5E+02 0.0054 22.7 5.3 36 12-47 1-38 (201)
372 PF00290 Trp_syntA: Tryptophan 20.6 1.8E+02 0.0038 25.8 4.6 40 121-163 70-110 (259)
373 PRK08303 short chain dehydroge 20.5 1.4E+02 0.0029 26.4 3.9 31 13-51 9-39 (305)
374 PRK07062 short chain dehydroge 20.5 1.5E+02 0.0032 24.9 4.0 30 13-50 9-38 (265)
375 PLN00141 Tic62-NAD(P)-related 20.5 1.8E+02 0.0039 24.4 4.5 33 9-49 14-46 (251)
376 PRK12481 2-deoxy-D-gluconate 3 20.5 1.5E+02 0.0033 24.8 4.1 30 13-50 9-38 (251)
377 PF02729 OTCace_N: Aspartate/o 20.5 4.4E+02 0.0095 20.8 7.2 79 61-159 58-136 (142)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 20.5 1.2E+02 0.0026 25.0 3.4 11 106-116 74-84 (185)
379 PF01182 Glucosamine_iso: Gluc 20.4 3.8E+02 0.0081 22.2 6.4 86 105-191 17-111 (199)
380 TIGR00147 lipid kinase, YegS/R 20.4 2.9E+02 0.0062 24.0 5.9 33 109-146 58-91 (293)
381 cd06200 SiR_like1 Cytochrome p 20.4 2.3E+02 0.0049 24.1 5.2 26 138-163 109-134 (245)
382 COG2984 ABC-type uncharacteriz 20.4 3.9E+02 0.0084 24.6 6.8 58 12-72 159-216 (322)
383 PRK08589 short chain dehydroge 20.4 1.5E+02 0.0032 25.2 4.0 54 12-74 6-59 (272)
384 PRK08569 rpl18p 50S ribosomal 20.2 2.3E+02 0.005 24.1 5.0 38 31-68 80-127 (193)
385 PRK08177 short chain dehydroge 20.1 1.7E+02 0.0036 23.9 4.2 31 12-50 1-31 (225)
386 PF00464 SHMT: Serine hydroxym 20.1 63 0.0014 30.4 1.7 43 31-73 307-359 (399)
387 PF01320 Colicin_Pyocin: Colic 20.1 89 0.0019 23.1 2.2 45 145-193 28-77 (85)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=6e-54 Score=357.37 Aligned_cols=178 Identities=46% Similarity=0.852 Sum_probs=170.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCcee
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEV 92 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~ 92 (220)
++|||||||+.++++.|++.|++||++||++|+.||||||..|+|++++++|+++||+|+||+|..+..++.+++.++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999996699999999999999999999999887677777888888
Q ss_pred eecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccc
Q 027662 93 KAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQ 172 (220)
Q Consensus 93 ~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~ 172 (220)
+++++|++||.+|++.||+||+||||+|||+|++++|+|.|+++|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHHHhh
Q 027662 173 IIVSAPTVKELVKKLEEY 190 (220)
Q Consensus 173 ~i~~~~~~ee~~~~l~~~ 190 (220)
.+.+++|++|++++|+++
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999763
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=9.5e-45 Score=308.03 Aligned_cols=184 Identities=36% Similarity=0.684 Sum_probs=168.5
Q ss_pred hcccceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCC
Q 027662 9 LSKFKRICVFCGSSQGKKSS-YQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGE 87 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~-~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~ 87 (220)
...+++|||||||+....+. |++.|++||+.||++|+.|+||||+ |+|+|+++||.++||+||||+|......+.++.
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~ 89 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNY 89 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcc
Confidence 34578999999999876666 9999999999999999888888885 999999999999999999999987765553444
Q ss_pred CCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCC--CCcEEEEeCCCcchHHHHHHH-HHHHcC
Q 027662 88 TVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLLNVDGYYNSLLSFID-KAVEEG 164 (220)
Q Consensus 88 ~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~--~kPiill~~~g~w~~l~~~l~-~~~~~g 164 (220)
..++++++.+|++||.+|+++|||||++|||+||++|++++|+|.|++.| .+|+++++.++||+++.+|++ +++.++
T Consensus 90 ~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~ 169 (205)
T COG1611 90 EVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEG 169 (205)
T ss_pred ccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhh
Confidence 56788999999999999999999999999999999999999999999998 888888999999999999998 899999
Q ss_pred CCCccccccEEEcCCHHHHHHHHHhhcCC
Q 027662 165 FISPSARQIIVSAPTVKELVKKLEEYVPC 193 (220)
Q Consensus 165 ~i~~~~~~~i~~~~~~ee~~~~l~~~~~~ 193 (220)
++++...+++++++|++++++.+.++.++
T Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 170 LISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred cCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 99999999999999999999999998865
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=2.7e-41 Score=276.67 Aligned_cols=157 Identities=28% Similarity=0.434 Sum_probs=134.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCce
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGE 91 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~ 91 (220)
|++|||||||+ .++.|++.|++||++||++|+.|||||+. |+|++++++|+++||+||||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999887 37899999999999999999999998885 99999999999999999999998653 2344445
Q ss_pred eeecCCH-HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccc
Q 027662 92 VKAVADM-HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSA 170 (220)
Q Consensus 92 ~~~~~~m-~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~ 170 (220)
+.+..+| ++||++|++.||+||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c-
Confidence 5554554 88999999999999999999999999999997 479999999999999988864 44444444 2
Q ss_pred cccEEEcCCHHHHHHHH
Q 027662 171 RQIIVSAPTVKELVKKL 187 (220)
Q Consensus 171 ~~~i~~~~~~ee~~~~l 187 (220)
.+.+++|++|+++++
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999865
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=2.1e-38 Score=252.32 Aligned_cols=131 Identities=46% Similarity=0.785 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCeEEEEeCCcccC-CCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhC
Q 027662 57 MGLVSQAVHDGGRHVIGVIPKTLMP-RELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLG 135 (220)
Q Consensus 57 M~a~a~gA~~~GG~viGi~P~~~~~-~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg 135 (220)
|+|+++||+++||+|+||+|+...+ ++.+++.+++++.+.+|++||.+|++.||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 666777788999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHH
Q 027662 136 IHDK-PVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKL 187 (220)
Q Consensus 136 ~~~k-Piill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 187 (220)
.++| ||+|+|.+|||+++++|+++|+++||++++..+.+.+++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 9877 999999999999999999999999999999999999999999999876
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.67 E-value=3.4e-15 Score=128.30 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=116.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCccc---CCCC-----
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLM---PREL----- 84 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~---~~e~----- 84 (220)
+.|+|. |||.. ++...+.|+++++.|+++|+.||+|++. |+|.+++++|+++||.+|+|+|..+. |.+.
T Consensus 45 ~~iaIv-GsR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIV-GTRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEE-cCCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 689999 77765 5677789999999999999999999997 99999999999999999999997652 2210
Q ss_pred --CCCC---Cce-----eeecCCHHHHHHHHHhhCCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchH
Q 027662 85 --TGET---VGE-----VKAVADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 152 (220)
Q Consensus 85 --~~~~---~~~-----~~~~~~m~~Rk~~m~~~sDa~VvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 152 (220)
..+. +++ ......|..||+++...||++|++..+ .||+..+-.++.+ +|||+.+-. ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEEEcC-CCCCc
Confidence 0000 011 112346789999999999999999987 7999998877743 699999843 35554
Q ss_pred HHHHHHHHHHcCCCCccccccEEEcCCHHHHHHH
Q 027662 153 LLSFIDKAVEEGFISPSARQIIVSAPTVKELVKK 186 (220)
Q Consensus 153 l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~ 186 (220)
..+--..++++|. ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4444556666663 235678887764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.38 E-value=8e-12 Score=106.84 Aligned_cols=144 Identities=23% Similarity=0.235 Sum_probs=87.4
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCccc---CCCCC--
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLM---PRELT-- 85 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~---~~e~~-- 85 (220)
..+.|+|. |||.. ++...+.|+++++.|+++|+.||+|+.. |+..+++++|+++||.+|+|+|.-+. |.+..
T Consensus 43 ~~~~iaIv-GsR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l 119 (212)
T PF02481_consen 43 KQPSIAIV-GSRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENREL 119 (212)
T ss_dssp GS-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHH
T ss_pred cCceEEEE-cCCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHH
Confidence 35689999 77776 6788899999999999999999999996 99999999999999999999987652 32210
Q ss_pred ------CCC-------CceeeecCCHHHHHHHHHhhCCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcc
Q 027662 86 ------GET-------VGEVKAVADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 150 (220)
Q Consensus 86 ------~~~-------~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w 150 (220)
.+. ...-.....|.+||+++...||++|++.-+ .||+.-+-.++.+ +|||+.+. ...+
T Consensus 120 ~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~vp-~~~~ 192 (212)
T PF02481_consen 120 AERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFAVP-GPID 192 (212)
T ss_dssp HHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE-----TT
T ss_pred HHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEEEe-CCCC
Confidence 000 011122346689999999999999999754 7999888777754 59999873 3466
Q ss_pred hHHHHHHHHHHHcC
Q 027662 151 NSLLSFIDKAVEEG 164 (220)
Q Consensus 151 ~~l~~~l~~~~~~g 164 (220)
++..+.-..++++|
T Consensus 193 ~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 193 DPNSEGNNELIKEG 206 (212)
T ss_dssp -GGGHHHHHHHHTT
T ss_pred CcccHHHHHHHHcC
Confidence 65555556677776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.33 E-value=6.3e-11 Score=108.97 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=118.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcc---cCCCCC---
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTL---MPRELT--- 85 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~---~~~e~~--- 85 (220)
.+.|+|. |||.. ++...+.++.+++.||++|+.||+|+.. |+..+++++|+++||.+|+|+++-. +|.+..
T Consensus 107 ~~~iaiV-GsR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~ 183 (374)
T PRK10736 107 SPQLAVV-GSRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLA 183 (374)
T ss_pred CCeEEEE-CCCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHH
Confidence 3579999 78875 6778889999999999999999999997 9999999999999999999987644 332210
Q ss_pred ----C-CCC--ce-----eeecCCHHHHHHHHHhhCCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcch
Q 027662 86 ----G-ETV--GE-----VKAVADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 151 (220)
Q Consensus 86 ----~-~~~--~~-----~~~~~~m~~Rk~~m~~~sDa~VvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~ 151 (220)
. +.. ++ -....+|..||+++...|+++||+.-+ .|||.=.-.++. .+|+|+.+- +...+
T Consensus 184 ~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavP-G~i~~ 256 (374)
T PRK10736 184 ESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALP-GPIGN 256 (374)
T ss_pred HHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEc-CCCCC
Confidence 0 000 11 112357899999999999999999765 688876655553 479999884 33555
Q ss_pred HHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHh
Q 027662 152 SLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEE 189 (220)
Q Consensus 152 ~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 189 (220)
+..+-..+++.+|. ..+.+++|+++.+..
T Consensus 257 ~~s~G~n~LI~~GA---------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 257 PGSEGPHWLIKQGA---------YLVTSPEDILENLQF 285 (374)
T ss_pred ccchhHHHHHHCCC---------EEeCCHHHHHHHhhh
Confidence 55555556666664 357789999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.11 E-value=2.9e-09 Score=97.24 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=112.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcc---cCCCC-----
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTL---MPREL----- 84 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~---~~~e~----- 84 (220)
+.++|. |||.. +....+.++.|++.|+++|+.||+|+.. |+..+++++|++++|++|+|+.+-+ +|++.
T Consensus 112 ~~vaIV-GsR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIV-GSRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEE-eCCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 689999 78876 6677889999999999999999999997 9999999999999999999987644 33321
Q ss_pred --CCCC-------CceeeecCCHHHHHHHHHhhCCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHH
Q 027662 85 --TGET-------VGEVKAVADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 153 (220)
Q Consensus 85 --~~~~-------~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l 153 (220)
..+. ...-....+|..||+++...|+++||+-.+ +|+|.=.-.++. .++.|+.+-++ ..++.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 0110 011223458899999999999999999887 699876665554 36778776432 22221
Q ss_pred HHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHhh
Q 027662 154 LSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEY 190 (220)
Q Consensus 154 ~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 190 (220)
..=-..++++|.. .+.+.+++++.+...
T Consensus 262 s~G~~~LI~~GA~---------lv~~~~dil~~l~~~ 289 (350)
T COG0758 262 SEGCNKLIKEGAK---------LVTSAEDILEELNAL 289 (350)
T ss_pred ccchHHHHHccch---------hcccHHHHHHHhhhh
Confidence 1111234555532 345567776666543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.56 E-value=0.029 Score=45.48 Aligned_cols=92 Identities=23% Similarity=0.221 Sum_probs=52.1
Q ss_pred EEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCC-CCCCC--ceeeecCCHHHHHHHHHhhCCeEEEecCCC---C
Q 027662 47 LVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPREL-TGETV--GEVKAVADMHQRKAEMAKHSDAFIALPGGY---G 120 (220)
Q Consensus 47 lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~-~~~~~--~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~---G 120 (220)
||+||- +|+..|+-+.|+++|-..=|-.|.-...++- -+..| .| ....+...|.+..++-||+.++|-=|. |
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E-~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GG 78 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQE-TPSSGYRQRTEWNVRDSDGTLIFTRGELTGG 78 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE--SS--HHHHHHHHHHTSSEEEEEESSS--HH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCcccccee-cCCCCHHHHHHhhhhhcCeEEEEecCCCCcH
Confidence 688876 6999999999999998888888865433221 11222 22 224678999999999999988886442 4
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
| ++ |...-.+|.||+.+++.
T Consensus 79 t--~l----T~~~a~~~~KP~l~i~~ 98 (145)
T PF12694_consen 79 T--AL----TVEFARKHGKPCLHIDL 98 (145)
T ss_dssp H--HH----HHHHHHHTT--EEEETS
T ss_pred H--HH----HHHHHHHhCCCEEEEec
Confidence 4 22 22222347899998854
No 10
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.28 E-value=0.22 Score=52.53 Aligned_cols=154 Identities=20% Similarity=0.242 Sum_probs=91.7
Q ss_pred eEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcC-----CeE--EEEeCCcccCC--
Q 027662 14 RICVFCGSSQGK-KSSYQDAAIE-LGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGG-----RHV--IGVIPKTLMPR-- 82 (220)
Q Consensus 14 ~I~V~ggS~~~~-~~~~~~~A~~-lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~G-----G~v--iGi~P~~~~~~-- 82 (220)
.|+|.||...-. .|.+.+.-++ |-+..-..|--|+|||-..|+|.-|..++++++ +++ |||-|.....+
T Consensus 120 vISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr~ 199 (1381)
T KOG3614|consen 120 VISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNRD 199 (1381)
T ss_pred EEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeechh
Confidence 599998887653 4555433333 333333379999999999999999999998864 233 66655322110
Q ss_pred --------------CCC-------CCCCceeeecC---------CHHHHHHHH--H-----hhC---C---eEEEecCCC
Q 027662 83 --------------ELT-------GETVGEVKAVA---------DMHQRKAEM--A-----KHS---D---AFIALPGGY 119 (220)
Q Consensus 83 --------------e~~-------~~~~~~~~~~~---------~m~~Rk~~m--~-----~~s---D---a~VvlpGG~ 119 (220)
..+ ++..+..+.++ ...-|+++= + ..+ + +.+++.||.
T Consensus 200 ~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~ 279 (1381)
T KOG3614|consen 200 DLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGGP 279 (1381)
T ss_pred hhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCCc
Confidence 000 11111222211 112343321 0 011 1 578889999
Q ss_pred CcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHH-HHHHcCCCCcccc
Q 027662 120 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFID-KAVEEGFISPSAR 171 (220)
Q Consensus 120 GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~-~~~~~g~i~~~~~ 171 (220)
+|+.=+.+..+- +.+.|++++.++|--.++++|+- ...+.|.++....
T Consensus 280 nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~ 328 (1381)
T KOG3614|consen 280 NTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAER 328 (1381)
T ss_pred hHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHH
Confidence 999877765532 23569999999999889988774 4455666555443
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.59 E-value=0.068 Score=40.67 Aligned_cols=46 Identities=35% Similarity=0.346 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhhCCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027662 96 ADMHQRKAEMAKHSDAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD 147 (220)
Q Consensus 96 ~~m~~Rk~~m~~~sDa~VvlpGG----~GTL~El~~~~~~~qlg~~~kPiill~~~ 147 (220)
....+|....++.||++|++-.+ .||.-|+..++.+ +|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 44578888899999998888766 8999999988764 6999998654
No 12
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.32 E-value=1.5 Score=38.28 Aligned_cols=122 Identities=25% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCcChHHHHHHHHHhcCC-eEEEEeCCcccCCCCCCCCCceeeecCCHH-HHHHHHHhhCCeEEEecCCCC
Q 027662 43 RNIDLVYGGGSIGLMGLVSQAVHDGGR-HVIGVIPKTLMPRELTGETVGEVKAVADMH-QRKAEMAKHSDAFIALPGGYG 120 (220)
Q Consensus 43 ~G~~lv~GGg~~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~~~~~~m~-~Rk~~m~~~sDa~VvlpGG~G 120 (220)
..+.|||=||. |.- .+.+.+.+..+ .++-+-|.. . +.....+. ...+. ..-.-++..||++|. -||.+
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~--~-~~~~~ni~----~~~~~~~~~~~~m~~ad~vIs-~~G~~ 261 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNA--A-DPRPGNIH----VRPFSTPDFAELMAAADLVIS-KGGYT 261 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCc--c-cccCCCEE----EeecChHHHHHHHHhCCEEEE-CCCHH
Confidence 56777876663 555 55566666554 333332221 1 11111121 12221 223335778996665 48999
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE-cCCHHHHHHHHHh
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS-APTVKELVKKLEE 189 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~-~~~~ee~~~~l~~ 189 (220)
|+.|+.. .+||++++-..++++.... .+.+.+.|... .+.. .-+++.+.++|++
T Consensus 262 t~~Ea~~---------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~-----~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 262 TISEALA---------LGKPALVIPRPGQDEQEYN-ARKLEELGLGI-----VLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHHH---------cCCCEEEEeCCCCchHHHH-HHHHHHCCCeE-----EcccccCCHHHHHHHHhc
Confidence 9988863 3799999977677766543 23344445431 0111 1267888887765
No 13
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=93.96 E-value=1.1 Score=37.31 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=57.7
Q ss_pred cceEEEEcCCCCC-------CChHHHHHHHHHHHHH---HHCCCeE-EEcCCCcChHHHHHHHHHhcC-----CeEEEEe
Q 027662 12 FKRICVFCGSSQG-------KKSSYQDAAIELGKEL---VSRNIDL-VYGGGSIGLMGLVSQAVHDGG-----RHVIGVI 75 (220)
Q Consensus 12 ~~~I~V~ggS~~~-------~~~~~~~~A~~lG~~L---A~~G~~l-v~GGg~~GlM~a~a~gA~~~G-----G~viGi~ 75 (220)
|+++||- |-|+- .+|.....-..|-+.| -+.|..- ++||. -|+.--++..+++.. -+.+-++
T Consensus 1 M~~~~~T-GyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Gga-lG~D~waae~vl~LK~~yp~ikL~~v~ 78 (177)
T PF06908_consen 1 MKRCCFT-GYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGA-LGVDLWAAEVVLELKKEYPEIKLALVL 78 (177)
T ss_dssp --EEEEE-E--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT-TT-EEEEEE
T ss_pred CeEEEEE-ecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCc-ccHHHHHHHHHHHHHhhhhheEEEEEE
Confidence 3455665 44432 3455444444444433 3467765 46665 599888888888753 3455666
Q ss_pred CCcccCCCCCC-C---------CCceeee--------cCCHHHHHHHHHhhCCeEEEecCC--CCcHHHHHHHHHHHHhC
Q 027662 76 PKTLMPRELTG-E---------TVGEVKA--------VADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLG 135 (220)
Q Consensus 76 P~~~~~~e~~~-~---------~~~~~~~--------~~~m~~Rk~~m~~~sDa~VvlpGG--~GTL~El~~~~~~~qlg 135 (220)
|-......... + ..+.... ...|..||+.|+++||.+|++==| -|+..=...... .+-.
T Consensus 79 Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~-~~~~ 157 (177)
T PF06908_consen 79 PFENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAK-KYQE 157 (177)
T ss_dssp SSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHH-HHHH
T ss_pred cccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHH-HHhh
Confidence 64332211100 0 0111221 124579999999999998888322 222211111111 1111
Q ss_pred CCCCcEEEEeC
Q 027662 136 IHDKPVGLLNV 146 (220)
Q Consensus 136 ~~~kPiill~~ 146 (220)
.++.||.++..
T Consensus 158 ~~~y~i~~I~~ 168 (177)
T PF06908_consen 158 QKGYPIDLIDP 168 (177)
T ss_dssp HH---EEEE-H
T ss_pred ccCCeEEEecH
Confidence 24678888753
No 14
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.41 E-value=1.8 Score=38.93 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=43.1
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCc-chHHHHHHHHHHHcCCCCcccc
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVEEGFISPSAR 171 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~g~i~~~~~ 171 (220)
|+..||++|+---.+.-..|... .+|||.++-..++ -....-|++.+++++..+.-..
T Consensus 241 ~La~Adyii~TaDSinM~sEAas---------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAAS---------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HHhhcceEEEecchhhhhHHHhc---------cCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 67889999998777766666542 4799999988888 5566668899988776554433
No 15
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.21 E-value=8.3 Score=34.87 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=52.7
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccc--c-----EEEc
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQ--I-----IVSA 177 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~--~-----i~~~ 177 (220)
++..||++||-+-.+-=+.|. ++ .+|||.++...+--..+..|++.|.+.|.+..-... . ..-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA---~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEA---AA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHH---HH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 678899999977665555444 32 369999998877555677788999999988755433 1 2334
Q ss_pred CCHHHHHHHHHhh
Q 027662 178 PTVKELVKKLEEY 190 (220)
Q Consensus 178 ~~~ee~~~~l~~~ 190 (220)
++.+.+.+.|.+.
T Consensus 296 ~et~r~A~~i~~r 308 (311)
T PF06258_consen 296 DETDRVAAEIRER 308 (311)
T ss_pred cHHHHHHHHHHHH
Confidence 5556666666554
No 16
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.08 E-value=1.9 Score=34.57 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccE
Q 027662 99 HQRKAEMAKHSDAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQII 174 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG----~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 174 (220)
.-|.+.+++.||.+|+.-|- +.|.-....+.+ .+||+|++-....--+|.+.=. .-.
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A------lgKplI~lh~~~~~HpLKEvda-------------~A~ 123 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA------LGKPLITLHPEELHHPLKEVDA-------------AAL 123 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHHhH-------------hhH
Confidence 57888899999999998775 333333333332 3699999987777677766311 123
Q ss_pred EEcCCHHHHHHHHH
Q 027662 175 VSAPTVKELVKKLE 188 (220)
Q Consensus 175 ~~~~~~ee~~~~l~ 188 (220)
..+++|+++++.|+
T Consensus 124 a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 124 AVAETPEQVVEILR 137 (141)
T ss_pred hhhCCHHHHHHHHH
Confidence 46889999999885
No 17
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=91.23 E-value=2.2 Score=30.25 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=45.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSR-NIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~-G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
++|.| ||++.-+| +......|-+.+++. ...||+||.+.|....+.+=|.+.|-.++-+-|+
T Consensus 4 ~rVli-~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 4 MRVLI-TGGRDWTD--HELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred CEEEE-EECCcccc--HHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 34555 47777543 444556677777775 5678899985699999999999998887777554
No 18
>PRK10565 putative carbohydrate kinase; Provisional
Probab=91.19 E-value=1 Score=43.49 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCcChHHHH---HHHHHhcC-CeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCC
Q 027662 43 RNIDLVYGGGSIGLMGLV---SQAVHDGG-RHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGG 118 (220)
Q Consensus 43 ~G~~lv~GGg~~GlM~a~---a~gA~~~G-G~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG 118 (220)
.|+.+|.||.. +.++|+ +++|+..| |.|.=+.|....+ ......-++++.+-..+--.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 59999999975 777765 66677665 5666566653211 1111122333322111112224467898776665
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHH
Q 027662 119 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLE 188 (220)
Q Consensus 119 ~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 188 (220)
.|+-++...++. .+...++|++ ++.++ +.++.. ... . ....+++-++-|+...+.
T Consensus 330 lg~~~~~~~~~~--~~~~~~~P~V-LDAda-----L~ll~~---~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQ--KVENFRKPML-WDADA-----LNLLAI---NPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHH--HHHhcCCCEE-EEchH-----HHHHhh---Ccc-c---cCCeEECCCHHHHHHHhC
Confidence 777655544432 2223568875 46655 233321 100 0 113567778887777653
No 19
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.95 E-value=10 Score=33.21 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCc-chHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 100 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
..-..++..||++|. ++|..|+.|. ++ .++|++.....+. .+.-....+.+.+.| ...+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~Ea---m~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAEL---AA------LGLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHHH---HH------hCCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecC
Confidence 444557889998885 5555665444 43 3699998754321 111000011222222 12222222
Q ss_pred --CHHHHHHHHHhhcC
Q 027662 179 --TVKELVKKLEEYVP 192 (220)
Q Consensus 179 --~~ee~~~~l~~~~~ 192 (220)
|++++.+.|.+...
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 79999998887754
No 20
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=90.89 E-value=10 Score=33.16 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=39.4
Q ss_pred HHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC--CHH
Q 027662 104 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP--TVK 181 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~--~~e 181 (220)
-++..||++|. ++|..|+-|.+ . .++|++..+..+.-.....-.+.+.+. ....++-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea~---~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAELA---A------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---H------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 47888998886 55555665554 2 479999876533211111001112111 112233233 489
Q ss_pred HHHHHHHhhcC
Q 027662 182 ELVKKLEEYVP 192 (220)
Q Consensus 182 e~~~~l~~~~~ 192 (220)
++.+.|.+...
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 99988887664
No 21
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=90.31 E-value=6.7 Score=35.67 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=42.5
Q ss_pred HHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCH
Q 027662 101 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTV 180 (220)
Q Consensus 101 Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 180 (220)
.-..++..||++|.-+| .+|+.|.+ + .++|+++.+.-.. ...-+ .+.+.+.|. -....|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EAm---a------~g~PvI~~~~~pg-qe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEAL---I------RGLPIILNGYIPG-QEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHHH---H------cCCCEEEecCCCc-cchhh-HHHHHhCCc--------eeecCCH
Confidence 45567899999887554 57876654 2 3799999863211 11111 112223332 1235899
Q ss_pred HHHHHHHHhhcC
Q 027662 181 KELVKKLEEYVP 192 (220)
Q Consensus 181 ee~~~~l~~~~~ 192 (220)
+++.+.|.+...
T Consensus 335 ~~la~~i~~ll~ 346 (382)
T PLN02605 335 KEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHc
Confidence 999888887654
No 22
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=90.20 E-value=8.9 Score=35.38 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcc---hHHHHHHHHHHHcCCCCcccc
Q 027662 95 VADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY---NSLLSFIDKAVEEGFISPSAR 171 (220)
Q Consensus 95 ~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w---~~l~~~l~~~~~~g~i~~~~~ 171 (220)
+..|.......+..||.+ +.-.|..|+.|++. ..+|.|++-. .++ +...+ .+.+.+.|.-
T Consensus 239 v~~f~~dm~~~~~~ADLv-IsRaGa~Ti~E~~a---------~g~P~IliP~-p~~~~~~Q~~N-A~~l~~~gaa----- 301 (357)
T COG0707 239 VLPFIDDMAALLAAADLV-ISRAGALTIAELLA---------LGVPAILVPY-PPGADGHQEYN-AKFLEKAGAA----- 301 (357)
T ss_pred EeeHHhhHHHHHHhccEE-EeCCcccHHHHHHH---------hCCCEEEeCC-CCCccchHHHH-HHHHHhCCCE-----
Confidence 344545556678889955 45566789999974 2699999853 344 22222 1223444432
Q ss_pred ccEEEcC--CHHHHHHHHHhhcC
Q 027662 172 QIIVSAP--TVKELVKKLEEYVP 192 (220)
Q Consensus 172 ~~i~~~~--~~ee~~~~l~~~~~ 192 (220)
.+.--+ +++++.+.|.+...
T Consensus 302 -~~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 302 -LVIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred -EEeccccCCHHHHHHHHHHHhc
Confidence 122122 36788877777654
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=89.87 E-value=11 Score=34.13 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHH
Q 027662 104 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKEL 183 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~ 183 (220)
.++..||++| -.||.||..|... +++|++++-. +.|.. .+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 4567799766 7788999988763 5799999842 23322 2334555555321101111 267777
Q ss_pred HHHHHhhcC
Q 027662 184 VKKLEEYVP 192 (220)
Q Consensus 184 ~~~l~~~~~ 192 (220)
.+.+++...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 777766544
No 24
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=89.61 E-value=15 Score=33.00 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchH-HHHHHHHHHHcCCCCccccccEE
Q 027662 97 DMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-LLSFIDKAVEEGFISPSARQIIV 175 (220)
Q Consensus 97 ~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~-l~~~l~~~~~~g~i~~~~~~~i~ 175 (220)
++.+.-..++..||++|.-+|| .|+.|. +. .++|+++.+..+..+. ... .+.+.|+ .+
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg-~t~~EA---~a------~g~PvI~~~~~~g~~~~n~~---~~~~~G~--------~~ 320 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGG-ITLSEA---AA------LGVPVILYKPVPGQEKENAM---YFERKGA--------AV 320 (380)
T ss_pred echhhHHHHHHhccEEEeCCCc-hHHHHH---HH------hCCCEEECCCCCCcchHHHH---HHHhCCc--------EE
Confidence 4434445678899988765554 465454 43 3699988764322221 112 2223343 34
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027662 176 SAPTVKELVKKLEEYVP 192 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~~ 192 (220)
...|++++.+.|.+...
T Consensus 321 ~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 321 VIRDDEEVFAKTEALLQ 337 (380)
T ss_pred EECCHHHHHHHHHHHHC
Confidence 46788888888877654
No 25
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=88.93 E-value=15 Score=32.65 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCeEEEcCCCcChHHHHHHHHHhcCC-eEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcH
Q 027662 44 NIDLVYGGGSIGLMGLVSQAVHDGGR-HVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTL 122 (220)
Q Consensus 44 G~~lv~GGg~~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL 122 (220)
.+.+|++|+. | ...+.+...+... .++-.-++... .... ..+.+..-..+.-.-++..||++|. -||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~~-~~~~----~~v~~~~~~~~~~~~~l~~ad~vI~-~~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVAK-NSYN----ENVEIRRITTDNFKELIKNAELVIT-HGGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCCc-cccC----CCEEEEECChHHHHHHHHhCCEEEE-CCChHHH
Confidence 6678998653 5 4555555444443 22211222110 1111 1222221111344556788996655 5778898
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCC
Q 027662 123 EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGF 165 (220)
Q Consensus 123 ~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~ 165 (220)
.|... +++|++++...+.++...+ .+.+.+.|.
T Consensus 261 ~Ea~~---------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEALS---------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHHH---------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 77642 4799999876555555433 233445554
No 26
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=88.68 E-value=8.3 Score=35.32 Aligned_cols=75 Identities=27% Similarity=0.232 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 027662 97 DMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS 176 (220)
Q Consensus 97 ~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 176 (220)
++.++-..++..||++|.-|||. |+.|.+ . .++|+++.+..+- ++..+- ..+.+.|+ -..
T Consensus 262 G~~~~~~~~~~~aDl~I~k~gg~-tl~EA~---a------~G~PvI~~~~~pg-qe~~N~-~~~~~~G~--------g~~ 321 (391)
T PRK13608 262 GYTKHMNEWMASSQLMITKPGGI-TISEGL---A------RCIPMIFLNPAPG-QELENA-LYFEEKGF--------GKI 321 (391)
T ss_pred eccchHHHHHHhhhEEEeCCchH-HHHHHH---H------hCCCEEECCCCCC-cchhHH-HHHHhCCc--------EEE
Confidence 34445566789999998877764 655554 3 2699999864321 111110 11223332 234
Q ss_pred cCCHHHHHHHHHhhc
Q 027662 177 APTVKELVKKLEEYV 191 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~ 191 (220)
.+|++++.+.|.+..
T Consensus 322 ~~~~~~l~~~i~~ll 336 (391)
T PRK13608 322 ADTPEEAIKIVASLT 336 (391)
T ss_pred eCCHHHHHHHHHHHh
Confidence 668888888777665
No 27
>PRK13660 hypothetical protein; Provisional
Probab=88.48 E-value=13 Score=31.16 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCeE-EEcCCCcChHHHHHHHHHhc-----CCeEEEEeCCcccCCCCCC----------CCCceeee---
Q 027662 34 IELGKELVSRNIDL-VYGGGSIGLMGLVSQAVHDG-----GRHVIGVIPKTLMPRELTG----------ETVGEVKA--- 94 (220)
Q Consensus 34 ~~lG~~LA~~G~~l-v~GGg~~GlM~a~a~gA~~~-----GG~viGi~P~~~~~~e~~~----------~~~~~~~~--- 94 (220)
++|-+.+. .|+.- ++||. -|+---++.-|++. .-+.+-++|-......-.. ...+.+..
T Consensus 33 ~~l~~~~e-~G~~wfi~gga-lG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALLE-EGLEWVIISGQ-LGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHHH-CCCCEEEECCc-chHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 44555544 56654 55655 59987777777765 2345556664322111000 01111111
Q ss_pred -----cCCHHHHHHHHHhhCCeEEEecCC---CCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 027662 95 -----VADMHQRKAEMAKHSDAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLN 145 (220)
Q Consensus 95 -----~~~m~~Rk~~m~~~sDa~VvlpGG---~GTL~El~~~~~~~qlg~~~kPiill~ 145 (220)
+..|..|++.|+++||++|++=-| -||---+-.+. .+-..++.||.++.
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~--k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAK--KKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHH--HhhhccCceEEEeC
Confidence 123789999999999998887332 23432121111 11123578888874
No 28
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=87.86 E-value=14 Score=33.53 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=41.2
Q ss_pred HHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEE-EcCCHHH
Q 027662 104 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV-SAPTVKE 182 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~-~~~~~ee 182 (220)
.++..||+ ++..||.||+.|... +++|++++-.. ..+.. +.+.+.+.|.- ..+. -.-++++
T Consensus 287 ~ll~~~~~-~I~hgG~~t~~Eal~---------~G~P~v~~p~~-~dq~~--~a~~l~~~g~g-----~~l~~~~~~~~~ 348 (392)
T TIGR01426 287 EILKKADA-FITHGGMNSTMEALF---------NGVPMVAVPQG-ADQPM--TARRIAELGLG-----RHLPPEEVTAEK 348 (392)
T ss_pred HHHhhCCE-EEECCCchHHHHHHH---------hCCCEEecCCc-ccHHH--HHHHHHHCCCE-----EEeccccCCHHH
Confidence 35678885 557899999988753 47999987432 22222 23344444421 0111 1225777
Q ss_pred HHHHHHhhcC
Q 027662 183 LVKKLEEYVP 192 (220)
Q Consensus 183 ~~~~l~~~~~ 192 (220)
+.+.|.+...
T Consensus 349 l~~ai~~~l~ 358 (392)
T TIGR01426 349 LREAVLAVLS 358 (392)
T ss_pred HHHHHHHHhc
Confidence 8877776654
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=87.31 E-value=23 Score=32.24 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=40.1
Q ss_pred HHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCc---chHHHHHHHHHHHcCCCCccccccEEEcCCH
Q 027662 104 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY---YNSLLSFIDKAVEEGFISPSARQIIVSAPTV 180 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~---w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 180 (220)
.++..|| +|+.-||.+|+.|+.. .++|.+++-.... .+...+ .+.+.+.|....-. .-.-++
T Consensus 248 ~~~~~ad-lvIsr~G~~t~~E~~~---------~g~P~I~iP~~~~~~~~~Q~~N-a~~l~~~g~~~~l~----~~~~~~ 312 (352)
T PRK12446 248 DILAITD-FVISRAGSNAIFEFLT---------LQKPMLLIPLSKFASRGDQILN-AESFERQGYASVLY----EEDVTV 312 (352)
T ss_pred HHHHhCC-EEEECCChhHHHHHHH---------cCCCEEEEcCCCCCCCchHHHH-HHHHHHCCCEEEcc----hhcCCH
Confidence 4788999 4555666788888863 4799999832111 122222 23455555331100 111257
Q ss_pred HHHHHHHHhhc
Q 027662 181 KELVKKLEEYV 191 (220)
Q Consensus 181 ee~~~~l~~~~ 191 (220)
+++.+.+.+..
T Consensus 313 ~~l~~~l~~ll 323 (352)
T PRK12446 313 NSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 30
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=87.29 E-value=14 Score=29.77 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCCeEEEecCC-CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 99 HQRKAEMAKHSDAFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG-~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
.-|-+.+++.||.+|+.-|- +=--+-.|.+=.-. ..+||+|++-....--+|.+.=. .-.-++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEvda-------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEVDN-------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHHhH-------------HHHHHh
Confidence 56778889999999998775 22222222221111 13699999987767667666311 113458
Q ss_pred CCHHHHHHHHH
Q 027662 178 PTVKELVKKLE 188 (220)
Q Consensus 178 ~~~ee~~~~l~ 188 (220)
++|+++++.|+
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 89999999875
No 31
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=86.30 E-value=20 Score=33.00 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCc------c--ccccEEE
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP------S--ARQIIVS 176 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~------~--~~~~i~~ 176 (220)
.+..||++|.-. |..|+ |++. .++|+++...-..+..+.. ++++.-.++.- + ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 678899666544 66687 6653 3799988753333222211 22222222211 1 1233444
Q ss_pred cCCHHHHHHHHHhhcC
Q 027662 177 APTVKELVKKLEEYVP 192 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~~ 192 (220)
.-+++.+.+.+.+.+.
T Consensus 331 ~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 ECTPHPLAIALLLLLE 346 (385)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4578888888877754
No 32
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=85.84 E-value=6.3 Score=35.30 Aligned_cols=32 Identities=31% Similarity=0.252 Sum_probs=22.4
Q ss_pred HHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 027662 103 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 145 (220)
Q Consensus 103 ~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 145 (220)
..++..||++|. ++|..|+ |.. . .++|+++.-
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~~ 287 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVGY 287 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEEE
Confidence 457889997766 6777776 653 2 369998763
No 33
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=84.24 E-value=14 Score=32.49 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 97 DMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 97 ~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
.+...-.-++..||.+|. .|| +|+.|+.. .++|++++-.
T Consensus 230 ~~~~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~~ 268 (279)
T TIGR03590 230 IDVENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAICL 268 (279)
T ss_pred eCHHHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEEe
Confidence 334445567889998888 666 89888763 3689998753
No 34
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=84.02 E-value=3 Score=33.23 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=23.0
Q ss_pred HHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 103 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 103 ~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
..++..|| +|+--||.||+.|+.. .++|.|++-.
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~ 100 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPL 100 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCC
Confidence 45678899 7778899999988864 4799988743
No 35
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=78.75 E-value=28 Score=28.85 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=66.6
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE---EEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCC
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL---VYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGE 87 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l---v~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~ 87 (220)
.+|.+-|-+|+..-.+-.-.-.+.+.-+.|-++|++= =.|=|..+.-+. .+.+...+|.+|-.. + +
T Consensus 2 ~~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~-~~~~~k~~gl~id~y-~-f-------- 70 (170)
T KOG3349|consen 2 HLMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDP-IDLIRKNGGLTIDGY-D-F-------- 70 (170)
T ss_pred cceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCH-HHhhcccCCeEEEEE-e-c--------
Confidence 3567788888865322222334566778888888752 356553233332 233334555443221 0 0
Q ss_pred CCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEE-eCCCcchHHHHHHHHHHHcCCC
Q 027662 88 TVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYNSLLSFIDKAVEEGFI 166 (220)
Q Consensus 88 ~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill-~~~g~w~~l~~~l~~~~~~g~i 166 (220)
.+.+. . -++.|| +|+=-+|.||--|.. . .+||.+++ |-+=+-+.=.++.+++.++|++
T Consensus 71 -------~psl~---e-~I~~Ad-lVIsHAGaGS~letL---~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 71 -------SPSLT---E-DIRSAD-LVISHAGAGSCLETL---R------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred -------CccHH---H-HHhhcc-EEEecCCcchHHHHH---H------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 11221 1 234466 566789999965553 2 36888765 4322334445556778888765
No 36
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=77.57 E-value=15 Score=32.03 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 027662 101 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 148 (220)
Q Consensus 101 Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 148 (220)
+-..++..+|++++ .+|.++-+.+.++... +..+++|++ ++.+|
T Consensus 85 ~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~--~~~~~~pvV-lDa~g 128 (272)
T TIGR00196 85 EDEELLERYDVVVI-GPGLGQDPSFKKAVEE--VLELDKPVV-LDADA 128 (272)
T ss_pred HHHhhhccCCEEEE-cCCCCCCHHHHHHHHH--HHhcCCCEE-EEhHH
Confidence 33344567776555 6679886654443322 223567865 46543
No 37
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=77.37 E-value=32 Score=30.30 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=59.2
Q ss_pred HHHHHHHCCC--eEEEcCCCcCh--HHHHHHHHHh-cC--CeEEEEeCCccc--------CCCCCCCCCceeeecCCH--
Q 027662 36 LGKELVSRNI--DLVYGGGSIGL--MGLVSQAVHD-GG--RHVIGVIPKTLM--------PRELTGETVGEVKAVADM-- 98 (220)
Q Consensus 36 lG~~LA~~G~--~lv~GGg~~Gl--M~a~a~gA~~-~G--G~viGi~P~~~~--------~~e~~~~~~~~~~~~~~m-- 98 (220)
.+-.+|+.|+ .||++|=+ |+ |.++.-.+.+ .| .-=+-|+|..-- ...+.|+ ++.+-..+.+
T Consensus 64 ~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hD-F~~ISLSDlLtP 141 (249)
T COG1010 64 EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHD-FCVISLSDLLTP 141 (249)
T ss_pred HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccc-eEEEEhHhcCCc
Confidence 3444566554 66888765 99 6555555555 44 234667776441 1111222 2222222222
Q ss_pred ---HHHHHHHHhhCCeEEEe--cCCCC---cHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 99 ---HQRKAEMAKHSDAFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 99 ---~~Rk~~m~~~sDa~Vvl--pGG~G---TL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
-++.......+|.+|+| |=+-+ -+.+.++++ .+......||++...
T Consensus 142 we~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil--~~~r~~~tpVgivrn 195 (249)
T COG1010 142 WEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEIL--REHRSPDTPVGIVRN 195 (249)
T ss_pred HHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHH--HHhcCCCCcEEEEec
Confidence 35555678899999988 66655 445555554 233345689999864
No 38
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=77.06 E-value=5 Score=36.04 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCe-EEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 32 AAIELGKELVSRNID-LVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 32 ~A~~lG~~LA~~G~~-lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
.|.++.+.++..++. |+.+|| .|...+++.|..+.+...+||+|.
T Consensus 46 ~a~~~a~~a~~~~~D~via~GG-DGTv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGG-DGTVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecC-cchHHHHHHHHhcCCCCceEEecC
Confidence 456677777776554 556777 599999999999998888999995
No 39
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.44 E-value=9.2 Score=31.01 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEe
Q 027662 31 DAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVI 75 (220)
Q Consensus 31 ~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~ 75 (220)
.-|.-+.++|+..|+.++++|.. =-.+.+++.|.+....+||+.
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 56778899999999999999886 556888888999999999993
No 40
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=72.96 E-value=29 Score=29.01 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCeEEEecCC------CCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027662 99 HQRKAEMAKHSDAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVD 147 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG------~GTL~El~~~~~~~qlg~~~kPiill~~~ 147 (220)
.+=...++++||++|+.-=+ .||.-|+-.++.+ +||++.+...
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d 107 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKD 107 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeec
Confidence 34455578999999988544 7999999988764 6999988653
No 41
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=72.59 E-value=39 Score=30.31 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=66.2
Q ss_pred HCCCeEEEcCCC--cChHHHHHHHHHhcC-CeEEEEeCCcccCCCCCCCCCceeeec--CCHH-HHHHHHHhhCCeEEEe
Q 027662 42 SRNIDLVYGGGS--IGLMGLVSQAVHDGG-RHVIGVIPKTLMPRELTGETVGEVKAV--ADMH-QRKAEMAKHSDAFIAL 115 (220)
Q Consensus 42 ~~G~~lv~GGg~--~GlM~a~a~gA~~~G-G~viGi~P~~~~~~e~~~~~~~~~~~~--~~m~-~Rk~~m~~~sDa~Vvl 115 (220)
++|..+|-||+. .|-.-.++.+|..+| |.|.=..|.... .. ......++++. .+.. ..+..+.+..|+++ +
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~-~~-~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avv-i 107 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAA-SA-LKSYLPELMVIEVEGKKLLEERELVERADAVV-I 107 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhh-hh-HhhcCcceeEeecccchhhHHhhhhccCCEEE-E
Confidence 368888888863 355666677777776 454444444211 00 01112233222 2222 22335677888654 5
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCC-CcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHH
Q 027662 116 PGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLE 188 (220)
Q Consensus 116 pGG~GTL~El~~~~~~~qlg~~~-kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 188 (220)
+-|.|.-+|..+++... .... +|+++ +-++.+ .+ .+..... ....++++..+-|....+.
T Consensus 108 GpGlG~~~~~~~~~~~~--l~~~~~p~Vi-DADaL~-----~l---a~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 108 GPGLGRDAEGQEALKEL--LSSDLKPLVL-DADALN-----LL---AELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred CCCCCCCHHHHHHHHHH--HhccCCCEEE-eCcHHH-----HH---HhCcccc--cCCcEEECCCHHHHHHhcC
Confidence 56788888777665322 1122 88876 443332 11 1111111 1112677777777766553
No 42
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=71.91 E-value=59 Score=30.53 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC-CCcchHHHHHHHHHHHcCCCCccccccEE
Q 027662 97 DMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-DGYYNSLLSFIDKAVEEGFISPSARQIIV 175 (220)
Q Consensus 97 ~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~-~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 175 (220)
.|..|-..++..||.+|.+ ||+.|.=||.. .+||-+++-. .+--+.++. .+.+.+-|.++-=..+.+.
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeILs---------~~k~aLivPr~~p~eEQliR-A~Rl~~LGL~dvL~pe~lt 351 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEILS---------FGKPALIVPRAAPREEQLIR-AQRLEELGLVDVLLPENLT 351 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHHHh---------CCCceEEeccCCCcHHHHHH-HHHHHhcCcceeeCcccCC
Confidence 4555666678888877766 67999877753 3688887742 222233332 1345666776644444443
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027662 176 SAPTVKELVKKLEEYVP 192 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~~ 192 (220)
++-+.++|+...+
T Consensus 352 ----~~~La~al~~~l~ 364 (400)
T COG4671 352 ----PQNLADALKAALA 364 (400)
T ss_pred ----hHHHHHHHHhccc
Confidence 6667777766554
No 43
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=71.12 E-value=31 Score=32.19 Aligned_cols=130 Identities=22% Similarity=0.208 Sum_probs=69.1
Q ss_pred HHHHCCCeEEEcCCCcC----hHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEE
Q 027662 39 ELVSRNIDLVYGGGSIG----LMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIA 114 (220)
Q Consensus 39 ~LA~~G~~lv~GGg~~G----lM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~Vv 114 (220)
..+.+....++=|+ .+ +-+.+.+...+.+.++|--..... . . ..+-....++....+ ...++..||+ ++
T Consensus 233 ~~~d~~~vyvslGt-~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~-~-~-~~~~p~n~~v~~~~p--~~~~l~~ad~-vI 305 (406)
T COG1819 233 IPADRPIVYVSLGT-VGNAVELLAIVLEALADLDVRVIVSLGGAR-D-T-LVNVPDNVIVADYVP--QLELLPRADA-VI 305 (406)
T ss_pred hcCCCCeEEEEcCC-cccHHHHHHHHHHHHhcCCcEEEEeccccc-c-c-cccCCCceEEecCCC--HHHHhhhcCE-EE
Confidence 34446666665554 46 445666777778888776654411 1 0 011111233333333 2337888995 55
Q ss_pred ecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE-cCCHHHHHHHHHhhcC
Q 027662 115 LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS-APTVKELVKKLEEYVP 192 (220)
Q Consensus 115 lpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~-~~~~ee~~~~l~~~~~ 192 (220)
-.||.||..|... +++|++++-. + +|.... .+...+.|.= ..+.+ .-+++.+.+.+.+.+.
T Consensus 306 ~hGG~gtt~eaL~---------~gvP~vv~P~-~-~DQ~~n-A~rve~~G~G-----~~l~~~~l~~~~l~~av~~vL~ 367 (406)
T COG1819 306 HHGGAGTTSEALY---------AGVPLVVIPD-G-ADQPLN-AERVEELGAG-----IALPFEELTEERLRAAVNEVLA 367 (406)
T ss_pred ecCCcchHHHHHH---------cCCCEEEecC-C-cchhHH-HHHHHHcCCc-----eecCcccCCHHHHHHHHHHHhc
Confidence 7999999988753 5799999853 2 444222 1223333321 11111 3456666666666544
No 44
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=70.86 E-value=85 Score=28.69 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=45.8
Q ss_pred eeeecCCHHHHHHHHHhhCCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCC
Q 027662 91 EVKAVADMHQRKAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFIS 167 (220)
Q Consensus 91 ~~~~~~~m~~Rk~~m~~~sDa~Vvlp---GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~ 167 (220)
++++.+++. ....++..||++++.| .+.|.- +.|++.+ ++||+.-...+-+..+. +.+.+.|+
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~---~~~~~~g~-- 368 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIF---ERLLQAGA-- 368 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHH---HHHHHCCC--
Confidence 344444443 3455788999876642 123332 5666653 69999632112223332 23333343
Q ss_pred ccccccEEEcCCHHHHHHHHHhhcC
Q 027662 168 PSARQIIVSAPTVKELVKKLEEYVP 192 (220)
Q Consensus 168 ~~~~~~i~~~~~~ee~~~~l~~~~~ 192 (220)
++..+|++++.+.|.+...
T Consensus 369 ------~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 369 ------AIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred ------eEEECCHHHHHHHHHHHhc
Confidence 4557889999888887654
No 45
>PRK08105 flavodoxin; Provisional
Probab=70.25 E-value=5.8 Score=31.77 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|.+|.|+.||..++.+ +.|++|++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 5679999999888544 578999999988888754
No 46
>PRK06703 flavodoxin; Provisional
Probab=69.24 E-value=53 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 4567777788777543 46777888777777654
No 47
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=69.04 E-value=82 Score=27.82 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCC--cchHHHHHHHHHHHcCCCCcccccc
Q 027662 96 ADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG--YYNSLLSFIDKAVEEGFISPSARQI 173 (220)
Q Consensus 96 ~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g--~w~~l~~~l~~~~~~g~i~~~~~~~ 173 (220)
.++...-..++..||++|. .+|.+|+-|. +. .++|++.....+ ..+... ..+.+.+.| ...
T Consensus 240 ~g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g~ 302 (357)
T PRK00726 240 VPFIDDMAAAYAAADLVIC-RAGASTVAEL---AA------AGLPAILVPLPHAADDHQTA-NARALVDAG------AAL 302 (357)
T ss_pred eehHhhHHHHHHhCCEEEE-CCCHHHHHHH---HH------hCCCEEEecCCCCCcCcHHH-HHHHHHHCC------CEE
Confidence 3443344567889998875 5566675555 33 369999875422 111111 112333333 122
Q ss_pred EEEcCC--HHHHHHHHHhhcCC
Q 027662 174 IVSAPT--VKELVKKLEEYVPC 193 (220)
Q Consensus 174 i~~~~~--~ee~~~~l~~~~~~ 193 (220)
+.-.+| ++++.+.|++.+..
T Consensus 303 ~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 303 LIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred EEEcccCCHHHHHHHHHHHHcC
Confidence 333444 89999999876643
No 48
>PRK09004 FMN-binding protein MioC; Provisional
Probab=68.73 E-value=5.8 Score=31.67 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|.+|.|+.||..++.+ +.|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 5679999999888544 578889999888887654
No 49
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=66.62 E-value=11 Score=30.47 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.3
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVY 49 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 49 (220)
+.++|+|+|-|.....+.| .+.+.|-++||.|+=
T Consensus 15 ~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~ViP 48 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVIP 48 (140)
T ss_pred hCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEEe
Confidence 3579999987776655555 488899999999874
No 50
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.79 E-value=54 Score=29.05 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=23.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|.+|+|+. +.. . ...+.+.++.++|.++|+.++
T Consensus 2 ~~~i~iv~--~~~-~-~a~~~~~~l~~~l~~~g~~~~ 34 (264)
T PRK03501 2 RRNLFFFY--KRD-K-ELVEKVKPLKKIAEEYGFTVV 34 (264)
T ss_pred CcEEEEEE--CCC-H-HHHHHHHHHHHHHHHCCCEEE
Confidence 34788883 222 2 555788889999999998776
No 51
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=64.94 E-value=9.3 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|++|+|+-+|..++.. ..|+.+...|...|+.+.
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~~ 34 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEVD 34 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceEE
Confidence 6789999999998654 478888999988887773
No 52
>PRK11914 diacylglycerol kinase; Reviewed
Probab=64.85 E-value=76 Score=27.98 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=18.4
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNID 46 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~ 46 (220)
++.|+++.++.-...+... ..+...++-+.|.+.|+.
T Consensus 5 ~~~~~~~~iI~NP~sG~g~-~~~~~~~~~~~l~~~g~~ 41 (306)
T PRK11914 5 RHEIGKVTVLTNPLSGHGA-APHAAERAIARLHHRGVD 41 (306)
T ss_pred cCCCceEEEEECCCCCCCc-HHHHHHHHHHHHHHcCCe
Confidence 4456666666443333221 223445555666666544
No 53
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=64.84 E-value=31 Score=27.48 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=42.6
Q ss_pred CCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHh--hCCeEEEecCCCCc
Q 027662 44 NIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAK--HSDAFIALPGGYGT 121 (220)
Q Consensus 44 G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~--~sDa~VvlpGG~GT 121 (220)
+..+|+=.| ++..++.+.+.+.| +|+- .... ..|.. + -++.+=-..+.+ ..+++++.--|++-
T Consensus 3 ~valisQSG--~~~~~~~~~~~~~g---~g~s--~~vs---~Gn~~-d----v~~~d~l~~~~~D~~t~~I~ly~E~~~d 67 (138)
T PF13607_consen 3 GVALISQSG--ALGTAILDWAQDRG---IGFS--YVVS---VGNEA-D----VDFADLLEYLAEDPDTRVIVLYLEGIGD 67 (138)
T ss_dssp SEEEEES-H--HHHHHHHHHHHHTT----EES--EEEE----TT-S-S----S-HHHHHHHHCT-SS--EEEEEES--S-
T ss_pred CEEEEECCH--HHHHHHHHHHHHcC---CCee--EEEE---eCccc-c----CCHHHHHHHHhcCCCCCEEEEEccCCCC
Confidence 345665433 67777888888876 4541 1100 01211 1 133322333332 45688888888999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027662 122 LEELLEVITWAQLGIHDKPVGLLNVD 147 (220)
Q Consensus 122 L~El~~~~~~~qlg~~~kPiill~~~ 147 (220)
-.++++++. ..... |||+++..+
T Consensus 68 ~~~f~~~~~--~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 68 GRRFLEAAR--RAARR-KPVVVLKAG 90 (138)
T ss_dssp HHHHHHHHH--HHCCC-S-EEEEE--
T ss_pred HHHHHHHHH--HHhcC-CCEEEEeCC
Confidence 999988764 33334 999999764
No 54
>PRK13337 putative lipid kinase; Reviewed
Probab=64.03 E-value=18 Score=32.01 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcCC-eEEEEeCC
Q 027662 34 IELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGGR-HVIGVIPK 77 (220)
Q Consensus 34 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~GG-~viGi~P~ 77 (220)
.++.+.+++.++ .||..|| .|-..++..+....+- ..+||+|.
T Consensus 47 ~~~a~~~~~~~~d~vvv~GG-DGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGG-DGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcC-CCHHHHHHHHHhhCCCCCcEEEECC
Confidence 444555555553 4556667 4999999998876543 47999995
No 55
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=63.61 E-value=44 Score=28.30 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeee--cCCHHHHHHHHH---------hhCCe
Q 027662 43 RNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKA--VADMHQRKAEMA---------KHSDA 111 (220)
Q Consensus 43 ~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~--~~~m~~Rk~~m~---------~~sDa 111 (220)
.|-.||||| + |..+.++-.+.++++..++-+ .+...|++.. .+++ ..++-+..+..+ +.-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 577899986 5 999999999999998877754 1112222111 1222 244544444443 24699
Q ss_pred EEEecCCC
Q 027662 112 FIALPGGY 119 (220)
Q Consensus 112 ~VvlpGG~ 119 (220)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99998885
No 56
>PRK06756 flavodoxin; Provisional
Probab=62.83 E-value=12 Score=29.34 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 1 MSKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred CceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 4577777788777543 46677777776666654
No 57
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=61.85 E-value=5.5 Score=41.16 Aligned_cols=48 Identities=33% Similarity=0.489 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhc-----------CCeEEEEeCCcccCCC
Q 027662 34 IELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDG-----------GRHVIGVIPKTLMPRE 83 (220)
Q Consensus 34 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~-----------GG~viGi~P~~~~~~e 83 (220)
..|+|.|..+-+.||.||| |.=+++.-|+++| ||.+||-.-..++..|
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e 887 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEE 887 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhcc
Confidence 4588899999999999987 8888888887763 7888887545444433
No 58
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=61.65 E-value=67 Score=28.74 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=54.4
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceee
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVK 93 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~ 93 (220)
+|+|+.-|+.... .+.+.-.+.-+.|.+.|+.++.|-. +.... +.
T Consensus 2 ~I~ivAPS~~~~~-~~~~~~~~~~~~L~~~G~~v~~~~~-----------~~~~~----~~------------------- 46 (308)
T cd07062 2 TIAVVSPSSGIPG-ELPHRLERAKKRLENLGFEVVEGPN-----------ALKGD----KY------------------- 46 (308)
T ss_pred eEEEEeCCCCCcc-cCHHHHHHHHHHHHhCCCEEEEecc-----------ccccc----cc-------------------
Confidence 6888877765432 2222333344556677999887632 11100 01
Q ss_pred ecCCHHHHHHHHHh-----hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEE
Q 027662 94 AVADMHQRKAEMAK-----HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVG 142 (220)
Q Consensus 94 ~~~~m~~Rk~~m~~-----~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPii 142 (220)
...+-.+|-.-|.+ ..||++..-||.|+. ++..-+.+..+..++|+++
T Consensus 47 ~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 47 LSASPEERAEELMAAFADPSIKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI 99 (308)
T ss_pred ccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE
Confidence 12233444444443 358999999999996 6777777777766666544
No 59
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=61.27 E-value=12 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=27.2
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRN 44 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G 44 (220)
++++|+|||||=++...-+...|+++.+.+...-
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 4689999999988877777778888888776544
No 60
>PRK05723 flavodoxin; Provisional
Probab=61.20 E-value=9.6 Score=30.71 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
++|+|+.||..++.+ +.|++|.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478999899888554 578889999988888864
No 61
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=60.82 E-value=1.6e+02 Score=28.32 Aligned_cols=139 Identities=20% Similarity=0.141 Sum_probs=67.5
Q ss_pred hhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeEEEcCCCc-------ChHHHHHHHHHhcCCeEEEEeCC
Q 027662 7 VQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSR--NIDLVYGGGSI-------GLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 7 ~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~--G~~lv~GGg~~-------GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
+.+...+++...||-.....+ -.....++-+.|.+. |..+++=|... -...++.++..+.+-++|=-...
T Consensus 259 ~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~ 337 (507)
T PHA03392 259 NNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDG 337 (507)
T ss_pred CCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344455667666664321100 001123455555544 56666655421 13455666665666554432221
Q ss_pred cccCCCCCCCCCceeeecCCHHHHHHHHH-hhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHH
Q 027662 78 TLMPRELTGETVGEVKAVADMHQRKAEMA-KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF 156 (220)
Q Consensus 78 ~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~-~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~ 156 (220)
...+... -..+.+.+-++.+ .+|. ..+++| +--||.||..|... +++|++++-. ++|...+
T Consensus 338 ~~~~~~~----p~Nv~i~~w~Pq~-~lL~hp~v~~f-ItHGG~~s~~Eal~---------~GvP~v~iP~--~~DQ~~N- 399 (507)
T PHA03392 338 EVEAINL----PANVLTQKWFPQR-AVLKHKNVKAF-VTQGGVQSTDEAID---------ALVPMVGLPM--MGDQFYN- 399 (507)
T ss_pred CcCcccC----CCceEEecCCCHH-HHhcCCCCCEE-EecCCcccHHHHHH---------cCCCEEECCC--CccHHHH-
Confidence 1111011 1234455555543 3332 345654 45788999888753 6899988743 5555433
Q ss_pred HHHHHHcC
Q 027662 157 IDKAVEEG 164 (220)
Q Consensus 157 l~~~~~~g 164 (220)
.+.+.+.|
T Consensus 400 a~rv~~~G 407 (507)
T PHA03392 400 TNKYVELG 407 (507)
T ss_pred HHHHHHcC
Confidence 34455555
No 62
>PRK13055 putative lipid kinase; Reviewed
Probab=60.77 E-value=21 Score=32.28 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcC-CeEEEEeCC
Q 027662 34 IELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG-RHVIGVIPK 77 (220)
Q Consensus 34 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~G-G~viGi~P~ 77 (220)
.++.+..+..++ .||..|| .|-+-+++.+....+ ...+||+|.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GG-DGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGG-DGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHhhcCCCEEEEECC-CCHHHHHHHHHhhcCCCCcEEEECC
Confidence 444554455553 4555667 499999999887654 356999995
No 63
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=60.24 E-value=59 Score=28.71 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=30.5
Q ss_pred HHHHHHHHHh-----hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEE
Q 027662 98 MHQRKAEMAK-----HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVG 142 (220)
Q Consensus 98 m~~Rk~~m~~-----~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPii 142 (220)
=.+|-.-|.+ ..|+++..-||.|+. ++..-+.|..+..++|+++
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 47 DEERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE
Confidence 3455544443 578999999999996 6777777877765555543
No 64
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=59.83 E-value=14 Score=28.33 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCC--eEEEcCCCcChHHHHHHHHHhcCC---eEEEEeCC
Q 027662 34 IELGKELVSRNI--DLVYGGGSIGLMGLVSQAVHDGGR---HVIGVIPK 77 (220)
Q Consensus 34 ~~lG~~LA~~G~--~lv~GGg~~GlM~a~a~gA~~~GG---~viGi~P~ 77 (220)
+++.+....... .||..||. |-.-.+..+..+.+. ..+||+|.
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecC
Confidence 344443444443 66667774 888888888887765 37999985
No 65
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.44 E-value=89 Score=24.86 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 33 AIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 33 A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
..-+...|..+||.+++-|-. =-.+.+.+.|.+.+-..||+
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 355677788899999998753 66799999999999999999
No 66
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=58.30 E-value=1.5e+02 Score=27.22 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCeEE-EecCCCCcHHHHHHHHHHHHhCC-CCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHH
Q 027662 109 SDAFI-ALPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKK 186 (220)
Q Consensus 109 sDa~V-vlpGG~GTL~El~~~~~~~qlg~-~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~ 186 (220)
.|+++ .++|++...+++.+.+.-..-.. .+||+++...+...+...+. +.+.|+ .+.+.++++++++.
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~a 380 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQK 380 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHHH
Confidence 46654 45677777777777665322111 57999554332232333332 333331 25678899999999
Q ss_pred HHhh
Q 027662 187 LEEY 190 (220)
Q Consensus 187 l~~~ 190 (220)
+.+.
T Consensus 381 l~~~ 384 (388)
T PRK00696 381 AVEA 384 (388)
T ss_pred HHHH
Confidence 8754
No 67
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=56.46 E-value=30 Score=26.94 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH----CCCeEE---EcCCC-cChHHHHHHHHHhcC
Q 027662 30 QDAAIELGKELVS----RNIDLV---YGGGS-IGLMGLVSQAVHDGG 68 (220)
Q Consensus 30 ~~~A~~lG~~LA~----~G~~lv---~GGg~-~GlM~a~a~gA~~~G 68 (220)
.+.|+.+|+.||+ .|+.-| -||.. -|-+.|++++|.++|
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~G 111 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAG 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 5788888888887 454433 23322 588999999999987
No 68
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=56.42 E-value=14 Score=28.40 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=21.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCCC-C-CcEEEEe
Q 027662 112 FIALPGGYGTLEELLEVITWAQLGIH-D-KPVGLLN 145 (220)
Q Consensus 112 ~VvlpGG~GTL~El~~~~~~~qlg~~-~-kPiill~ 145 (220)
+|+.-||=||++|+...+. +.... . .|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~--~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD--KRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHH--hcccccCCCcEEEeC
Confidence 7778999999999987662 22211 1 5777763
No 69
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=55.39 E-value=30 Score=30.55 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVY 49 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 49 (220)
+++|+|.+|......+.-...++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 45788887766666667778999999999999998654
No 70
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=55.31 E-value=45 Score=25.84 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCC---CcChHHHHHHHHHhcCC
Q 027662 30 QDAAIELGKELVS----RNI-DLVYGGG---SIGLMGLVSQAVHDGGR 69 (220)
Q Consensus 30 ~~~A~~lG~~LA~----~G~-~lv~GGg---~~GlM~a~a~gA~~~GG 69 (220)
.+.|+.+|+.||+ .|+ .++++=+ ..|-+.|+++++.++|-
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl 117 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGL 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTC
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCC
Confidence 3678888888886 686 4455422 26889999999999884
No 71
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=54.83 E-value=14 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|+|+|++|......+.-...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 477777776666667777899999999999999987
No 72
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=54.72 E-value=26 Score=29.24 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred CeEEEcCCCcChHHHH-HHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeec---CCHHHHHHHHHhhCCeEEEe
Q 027662 45 IDLVYGGGSIGLMGLV-SQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAV---ADMHQRKAEMAKHSDAFIAL 115 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~-a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~---~~m~~Rk~~m~~~sDa~Vvl 115 (220)
...++=-. .|-|+.. ++.|...|..|+=|.-... ...++..+.+.+ .+|.+.-...+..+|++|..
T Consensus 20 VR~ItN~S-SG~~G~~lA~~~~~~Ga~V~li~g~~~----~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 20 VRFITNRS-SGKMGAALAEEAARRGAEVTLIHGPSS----LPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred ceEecCCC-cCHHHHHHHHHHHHCCCEEEEEecCcc----ccccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 44555555 4999765 7788889999888853221 112333344433 45566666666778877754
No 73
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=54.18 E-value=33 Score=31.16 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEe
Q 027662 36 LGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIAL 115 (220)
Q Consensus 36 lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~Vvl 115 (220)
.-+.|.++|+.+++.||. |+. +.+.++.-.| .+-++-.++..-+-.-.-.||.+|+|
T Consensus 176 ~Ik~L~~~g~vVI~~GGG-GIP------Vv~~~~~~~G----------------VeAVIDKDlasalLA~~i~AD~liIL 232 (312)
T COG0549 176 AIKALLESGHVVIAAGGG-GIP------VVEEGAGLQG----------------VEAVIDKDLASALLAEQIDADLLIIL 232 (312)
T ss_pred HHHHHHhCCCEEEEeCCC-Ccc------eEecCCCcce----------------eeEEEccHHHHHHHHHHhcCCEEEEE
Confidence 445666777777766663 654 1221111222 35567778854333334469999999
Q ss_pred cCC
Q 027662 116 PGG 118 (220)
Q Consensus 116 pGG 118 (220)
-.-
T Consensus 233 TdV 235 (312)
T COG0549 233 TDV 235 (312)
T ss_pred ecc
Confidence 764
No 74
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.92 E-value=22 Score=32.05 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=60.9
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCc
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVG 90 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~ 90 (220)
++++|.++.- .+ .+...+.+.++.++|.+.|+.+..---. . + .. +. ..
T Consensus 2 ~~kkv~lI~n--~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~------~---~~-----~~------------~~-- 49 (305)
T PRK02645 2 QLKQVIIAYK--AG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P------K---DN-----PY------------PV-- 49 (305)
T ss_pred CcCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h------h---hc-----cc------------cc--
Confidence 5778999833 23 3455567888888898999886653211 0 0 00 00 00
Q ss_pred eeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC-C--CcchHH------HHHHHHHH
Q 027662 91 EVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-D--GYYNSL------LSFIDKAV 161 (220)
Q Consensus 91 ~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~-~--g~w~~l------~~~l~~~~ 161 (220)
+ .....+..|.+|++ ||=||+.+....+. ..++|++.+|. + ||.... .+.++.+.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 00011246766655 99999998876442 35789999986 3 565442 34555555
Q ss_pred HcC
Q 027662 162 EEG 164 (220)
Q Consensus 162 ~~g 164 (220)
+..
T Consensus 114 ~g~ 116 (305)
T PRK02645 114 EDR 116 (305)
T ss_pred cCC
Confidence 433
No 75
>PRK11914 diacylglycerol kinase; Reviewed
Probab=52.67 E-value=30 Score=30.56 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 32 AAIELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 32 ~A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
.|.++.+.+++.++ .||..|| .|-..+++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GG-DGTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGG-DGVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECC-chHHHHHhHHhccC-CCcEEEEeC
Confidence 45667776666664 3556667 49998888887643 467999994
No 76
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=52.07 E-value=63 Score=29.74 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=62.5
Q ss_pred cCCCcChHHHHHHHHHhcCCeEEEEeCCcc-cCCCCCCCCCceeeecCCH-HHHHHHHHhhCCeEEEecCCCC-------
Q 027662 50 GGGSIGLMGLVSQAVHDGGRHVIGVIPKTL-MPRELTGETVGEVKAVADM-HQRKAEMAKHSDAFIALPGGYG------- 120 (220)
Q Consensus 50 GGg~~GlM~a~a~gA~~~GG~viGi~P~~~-~~~e~~~~~~~~~~~~~~m-~~Rk~~m~~~sDa~VvlpGG~G------- 120 (220)
|.|++-+..++++......|..+.++.... .+.. .........+...| ..|+.+.-..-..++++.||.-
T Consensus 9 GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~-~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~~~~~~~ 87 (340)
T TIGR03575 9 AAGKSTLARSLSATLRRERGWAVAVITYDDIIPEA-AFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSELSAPPGK 87 (340)
T ss_pred CCCHHHHHHHHHHHHHhccCCeEEEEccccccccc-chhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccc
Confidence 455555666666655544556666653322 1110 00000001112233 4555554444466778877743
Q ss_pred ---cHHHHHHHHH-----------H----HHhC--CCCCc-EEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 121 ---TLEELLEVIT-----------W----AQLG--IHDKP-VGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 121 ---TL~El~~~~~-----------~----~qlg--~~~kP-iill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
|..+....+. + ..+- ...+| +++++..-|+......+..+...--. ....+++.-+
T Consensus 88 ~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~p 164 (340)
T TIGR03575 88 TEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCP 164 (340)
T ss_pred chhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCC
Confidence 3333333321 0 0011 12577 45566555566666555544432111 1244666667
Q ss_pred HHHHHHHHHh
Q 027662 180 VKELVKKLEE 189 (220)
Q Consensus 180 ~ee~~~~l~~ 189 (220)
+++++++..+
T Consensus 165 le~~l~RN~~ 174 (340)
T TIGR03575 165 VESCLLRNKQ 174 (340)
T ss_pred HHHHHHHHhc
Confidence 7766666644
No 77
>PRK09271 flavodoxin; Provisional
Probab=51.55 E-value=20 Score=28.78 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
|+|.|+.+|..++.. +.|+.+.+.|.+.|+.+
T Consensus 1 mkv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 1 MRILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred CeEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 366777788777543 56777888887777764
No 78
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=51.24 E-value=43 Score=30.34 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=34.4
Q ss_pred hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----CcchHHHHHHHH
Q 027662 108 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 159 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 159 (220)
..|+|||.-| .-||+|...++.+.- . .+||||+-+.- ...|...++..-
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~-~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-E-NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-c-CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 4799998875 899999998887632 2 38999997532 244555665544
No 79
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=50.06 E-value=43 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=36.1
Q ss_pred HhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----CcchHHHHHHHH
Q 027662 106 AKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 159 (220)
Q Consensus 106 ~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 159 (220)
.+..|+|||+-| .-||+|-..++.+.- . .+||||+-+.- -..|...+++..
T Consensus 75 ~~~~dG~VVtHG-TDTme~TA~~Ls~~l-~-~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 75 YDDYDGFVITHG-TDTMAYTAAALSFML-E-TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred HhcCCeEEEccC-CchHHHHHHHHHHHc-C-CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 345899999985 799999998887642 2 38999997632 244666666544
No 80
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=49.39 E-value=64 Score=26.99 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=40.2
Q ss_pred HHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHH
Q 027662 102 KAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVK 181 (220)
Q Consensus 102 k~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~e 181 (220)
..-++..||++|.-...-|.-.=+.|++. .++|++.-+..+. ..+ ++ + .....++-.+|++
T Consensus 257 ~~~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~~~---i~----~-----~~~g~~~~~~~~~ 317 (359)
T cd03808 257 VPELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-REA---VI----D-----GVNGFLVPPGDAE 317 (359)
T ss_pred HHHHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-hhh---hh----c-----CcceEEECCCCHH
Confidence 33467889987654322222223556654 4799998765432 221 11 1 1223344456899
Q ss_pred HHHHHHHhhcC
Q 027662 182 ELVKKLEEYVP 192 (220)
Q Consensus 182 e~~~~l~~~~~ 192 (220)
++.+.|.+...
T Consensus 318 ~~~~~i~~l~~ 328 (359)
T cd03808 318 ALADAIERLIE 328 (359)
T ss_pred HHHHHHHHHHh
Confidence 99998887543
No 81
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=49.17 E-value=1.8e+02 Score=25.42 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 99 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
...-..++..||++|.=+| |..+|.+ . .++|+++++..+-+.. .++.|. .+...+
T Consensus 268 ~~~~~~l~~~ad~~v~~Sg--gi~~Ea~---~------~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~ 322 (363)
T cd03786 268 YLYFLLLLKNADLVLTDSG--GIQEEAS---F------LGVPVLNLRDRTERPE-------TVESGT-------NVLVGT 322 (363)
T ss_pred HHHHHHHHHcCcEEEEcCc--cHHhhhh---h------cCCCEEeeCCCCccch-------hhheee-------EEecCC
Confidence 3444556788998885454 5444443 1 3699999864322221 122231 133345
Q ss_pred CHHHHHHHHHhhcCC
Q 027662 179 TVKELVKKLEEYVPC 193 (220)
Q Consensus 179 ~~ee~~~~l~~~~~~ 193 (220)
|++++.+.|.+....
T Consensus 323 ~~~~i~~~i~~ll~~ 337 (363)
T cd03786 323 DPEAILAAIEKLLSD 337 (363)
T ss_pred CHHHHHHHHHHHhcC
Confidence 799999999887654
No 82
>PRK00861 putative lipid kinase; Reviewed
Probab=48.88 E-value=33 Score=30.23 Aligned_cols=43 Identities=28% Similarity=0.467 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 33 AIELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 33 A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
|.++.+..++.++ .||..|| .|-...+..+.... +..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GG-DGTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGG-DGTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECC-hHHHHHHHHHHhcC-CCcEEEEcC
Confidence 3455555555554 4566777 49999999988765 467999995
No 83
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=48.62 E-value=48 Score=31.26 Aligned_cols=74 Identities=24% Similarity=0.440 Sum_probs=46.7
Q ss_pred CeEEEcCCCcChHHHHHHHHHh--------------------cCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHH
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHD--------------------GGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAE 104 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~--------------------~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~ 104 (220)
|.|.+|-|| |+.+-..+-+.+ .+|++.||--..+.|.....-.-..-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 567889898 999888777666 35777887544443322211111111222333
Q ss_pred HHhhCCeEEEecCCCCcHHHHH
Q 027662 105 MAKHSDAFIALPGGYGTLEELL 126 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~ 126 (220)
--++.++|+-.||+|--.|+.
T Consensus 214 -ef~A~aviv~SGGIGGnhelV 234 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELV 234 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHH
Confidence 235789999999999999987
No 84
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=48.04 E-value=39 Score=29.73 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcC-C--eEEEEeCC
Q 027662 33 AIELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG-R--HVIGVIPK 77 (220)
Q Consensus 33 A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~G-G--~viGi~P~ 77 (220)
|.++.+.+++.++ .||..|| .|-.-++..+..+.+ + ..+||+|.
T Consensus 41 a~~~a~~~~~~~~d~vv~~GG-DGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGG-DGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcC-ChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 3445555555553 4455566 599999999987653 2 35999994
No 85
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=48.01 E-value=1e+02 Score=23.81 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=4.4
Q ss_pred EEEecCCCC
Q 027662 112 FIALPGGYG 120 (220)
Q Consensus 112 ~VvlpGG~G 120 (220)
.|++.||.+
T Consensus 37 ~ii~sGg~~ 45 (150)
T cd06259 37 KLIVSGGQG 45 (150)
T ss_pred EEEEcCCCC
Confidence 455555544
No 86
>PRK06703 flavodoxin; Provisional
Probab=46.65 E-value=47 Score=25.99 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=7.3
Q ss_pred HHHHHHhcCCeEEE
Q 027662 60 VSQAVHDGGRHVIG 73 (220)
Q Consensus 60 ~a~gA~~~GG~viG 73 (220)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44444456666555
No 87
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=46.41 E-value=1.2e+02 Score=26.45 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 100 QRKAEMAKHSDAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvlp-GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
+...-++..||++|... -|+|.. +.|++. .++||+..+.++. ..+ +.......++-.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~~-~e~------------i~~~~~G~~~~~~ 311 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGGA-LET------------VIDGVTGILFEEQ 311 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCCC-cce------------eeCCCCEEEeCCC
Confidence 44556788999887532 566665 456664 4699999876442 221 1111223344467
Q ss_pred CHHHHHHHHHhhcCC
Q 027662 179 TVKELVKKLEEYVPC 193 (220)
Q Consensus 179 ~~ee~~~~l~~~~~~ 193 (220)
|++++.+.|.+....
T Consensus 312 ~~~~la~~i~~l~~~ 326 (351)
T cd03804 312 TVESLAAAVERFEKN 326 (351)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899988888876543
No 88
>PRK12361 hypothetical protein; Provisional
Probab=46.26 E-value=41 Score=32.48 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 33 AIELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 33 A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
|.++.+..++.|. .||..||. |--..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4555655555554 45566674 9888888887654 467999994
No 89
>PRK15494 era GTPase Era; Provisional
Probab=46.16 E-value=2.2e+02 Score=25.80 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=41.3
Q ss_pred HhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCC-CcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE----cCCH
Q 027662 106 AKHSDAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS----APTV 180 (220)
Q Consensus 106 ~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~-kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~----~~~~ 180 (220)
+..||++|++--..-++++....+ +..+...+ .|++++|..+..+....-+......... ....+.+ -.+.
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 467998777654433444442211 12222223 4555667544432211212222222110 1122222 3478
Q ss_pred HHHHHHHHhhcCCcc
Q 027662 181 KELVKKLEEYVPCHE 195 (220)
Q Consensus 181 ee~~~~l~~~~~~~~ 195 (220)
++++++|.++.++..
T Consensus 205 ~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 205 DGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999887754
No 90
>PRK05568 flavodoxin; Provisional
Probab=46.15 E-value=36 Score=26.20 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=19.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNID 46 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~ 46 (220)
|++|.|+..|..++.. +.|+.+.+.+.+.|+.
T Consensus 1 m~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~ 32 (142)
T PRK05568 1 MKKINIIYWSGTGNTE---AMANLIAEGAKENGAE 32 (142)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHHCCCe
Confidence 3456666677666543 4556666666666654
No 91
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=46.14 E-value=35 Score=33.99 Aligned_cols=43 Identities=23% Similarity=0.473 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHH
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGL 59 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a 59 (220)
-.|+|+||| |+.|.+.|..+.+.|.+.|...|+=.|+.+-|+.
T Consensus 547 a~i~viCss----D~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 547 AQVAVLCSS----DKVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred CCEEEEeCC----CcchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 469999988 5678899999999996666543333444465654
No 92
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.95 E-value=1e+02 Score=25.60 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=49.2
Q ss_pred hCCeEEEecCCCCcHHHHHHHHH-----HH--HhCCCCCcEEEEeCCCcch-HH-HHHHHHHHHcCC-CCccccccEEEc
Q 027662 108 HSDAFIALPGGYGTLEELLEVIT-----WA--QLGIHDKPVGLLNVDGYYN-SL-LSFIDKAVEEGF-ISPSARQIIVSA 177 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~-----~~--qlg~~~kPiill~~~g~w~-~l-~~~l~~~~~~g~-i~~~~~~~i~~~ 177 (220)
.+|++|+.|-..+|+.-+..=++ -. ..-..++|+++.=. ..|. +. ++=++.+.+.|+ +=+.....+.--
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~-~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~~~~p 153 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR-ETPLNSIHLENMLRLSRMGAIILPPMPAFYTRP 153 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC-CCcCCHHHHHHHHHHHHCCCEEECCCCcccCCC
Confidence 48999999999999988763211 00 11125789998854 4553 32 222445555554 222333445556
Q ss_pred CCHHHHHHHHHh
Q 027662 178 PTVKELVKKLEE 189 (220)
Q Consensus 178 ~~~ee~~~~l~~ 189 (220)
.+++|+++++..
T Consensus 154 ~~~~~~~~~i~~ 165 (181)
T TIGR00421 154 KSVEDMIDFIVG 165 (181)
T ss_pred CCHHHHHHHHHH
Confidence 899997777754
No 93
>PRK13054 lipid kinase; Reviewed
Probab=45.81 E-value=45 Score=29.43 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcC-C--eEEEEeCC
Q 027662 34 IELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG-R--HVIGVIPK 77 (220)
Q Consensus 34 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~G-G--~viGi~P~ 77 (220)
.++.+.+++.++ .||..||. |-.-.++.+..... + ..+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 344444444443 45566774 98888888877542 2 46999995
No 94
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=45.48 E-value=68 Score=27.31 Aligned_cols=41 Identities=32% Similarity=0.439 Sum_probs=22.9
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCc
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 149 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~ 149 (220)
.....|++++ .+|.|+-+.+..+.... ..++.|++ ++.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~~--~~~~~pvV-lDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEKA--LAKDKPLV-LDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHHH--HhcCCCEE-EEcHHH
Confidence 4456787655 66688854444443322 23467865 576543
No 95
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=45.38 E-value=45 Score=32.01 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChHHHHHHHHHhcC------CeEEEEeCC
Q 027662 33 AIELGKELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG------RHVIGVIPK 77 (220)
Q Consensus 33 A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~G------G~viGi~P~ 77 (220)
|+++.+.++..++ .||.-|| .|..-.+..|..... ...+||||.
T Consensus 157 A~~la~~~~~~~~D~VV~vGG-DGTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSG-DGILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcC-CCHHHHHHHHHhhCccccccccCceEEecC
Confidence 4455555555554 4566667 499999999887542 356999995
No 96
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=45.12 E-value=2.1e+02 Score=25.37 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=36.3
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
+++++-|- |++.+ ..+++++.||++|+.||-=+-+.=-++++++.-....|..+=++|-
T Consensus 5 ~~~~~lIT-GASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 5 KGKTALIT-GASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred CCcEEEEE-CCCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 34455555 44444 3356788888999998877766444566666555544444555554
No 97
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=45.04 E-value=55 Score=26.81 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=26.4
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
...++.|+|. |...+..... .|..|+..+|+.|..++
T Consensus 14 ~~~~kvI~v~-s~kgG~GKTt--~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 14 GAEIKVLLIT-SVKPGEGKST--TSANIAVAFAQAGYKTL 50 (204)
T ss_pred cCCCcEEEEe-cCCCCCCHHH--HHHHHHHHHHhCCCeEE
Confidence 3447788888 4444544433 67899999999998776
No 98
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=45.01 E-value=1.4e+02 Score=24.77 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 100 QRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
+....++..||++|.-.. |+|+ =+.|++. .++|++..+..+....+.. . .....++-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~~~~~~-------~-----~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGPSEIIE-------D-----GVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCchHhhhc-------c-----CcceEEeCC
Confidence 344557778997665432 3333 2556654 4799998765433332211 1 112233445
Q ss_pred CCHHHHHHHHHhhcC
Q 027662 178 PTVKELVKKLEEYVP 192 (220)
Q Consensus 178 ~~~ee~~~~l~~~~~ 192 (220)
.|++++.+.|.+...
T Consensus 304 ~~~~~~~~~i~~ll~ 318 (348)
T cd03820 304 GDVEALAEALLRLME 318 (348)
T ss_pred CCHHHHHHHHHHHHc
Confidence 578888888887653
No 99
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=44.60 E-value=1.3e+02 Score=25.66 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCeEEEec----CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEE
Q 027662 100 QRKAEMAKHSDAFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV 175 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvlp----GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 175 (220)
+....++..||++|... .|+|. =+.|++. .++||+.-+.++..+.+.. ......++
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGI--VLLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccch--HHHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEEe
Confidence 44556788899887642 45554 2455554 4799998776544332211 01223345
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027662 176 SAPTVKELVKKLEEYVP 192 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~~ 192 (220)
-.+|++++.+.|.+...
T Consensus 315 ~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 315 PPGDPAALAEAIRRLLE 331 (357)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 56789999999887654
No 100
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=44.56 E-value=73 Score=26.68 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=52.1
Q ss_pred hCCeEEEecCCCCcHHHHHHHHH-------HHHhCCCCCcEEEEeCCCcchH-H-HHHHHHHHHcCC-CCccccccEEEc
Q 027662 108 HSDAFIALPGGYGTLEELLEVIT-------WAQLGIHDKPVGLLNVDGYYNS-L-LSFIDKAVEEGF-ISPSARQIIVSA 177 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~-------~~qlg~~~kPiill~~~g~w~~-l-~~~l~~~~~~g~-i~~~~~~~i~~~ 177 (220)
.+|++|+.|-..+|+.-+..=++ +...-..++|+++.-. .+|.. . ++-++.+.+.|+ +=+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 48999999999999987753211 0111235799998864 57753 2 334556666665 333344555556
Q ss_pred CCHHHHHHHHHh
Q 027662 178 PTVKELVKKLEE 189 (220)
Q Consensus 178 ~~~ee~~~~l~~ 189 (220)
.+.+|+++++-.
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 899999988854
No 101
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=44.46 E-value=42 Score=28.17 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=28.4
Q ss_pred cceEEEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCeE-EEc
Q 027662 12 FKRICVFCGSSQGK--KSSYQDAAIELGKELVSRNIDL-VYG 50 (220)
Q Consensus 12 ~~~I~V~ggS~~~~--~~~~~~~A~~lG~~LA~~G~~l-v~G 50 (220)
|++|+|+ |++-.+ --=|+..+++|+..|+++|+.+ ||+
T Consensus 1 mkkIaIi-GtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc 41 (185)
T PF09314_consen 1 MKKIAII-GTRGIPARYGGFETFVEELAPRLVSKGIDVTVYC 41 (185)
T ss_pred CceEEEE-eCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEE
Confidence 6899999 565432 2357789999999999999874 443
No 102
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.24 E-value=93 Score=27.83 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=36.3
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC----------------------------CeEEEcCCCcChHHHH
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRN----------------------------IDLVYGGGSIGLMGLV 60 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G----------------------------~~lv~GGg~~GlM~a~ 60 (220)
...+++|+|+. +.. +...+.+.++.++|.++| +.++. ||. |-|=-+
T Consensus 7 ~~~~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~i-GGD-GT~L~a 80 (287)
T PRK14077 7 HKNIKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISL-GGD-GTLISL 80 (287)
T ss_pred cccCCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEE-CCC-HHHHHH
Confidence 34477899993 332 255677888888886554 22333 454 776555
Q ss_pred HHHHHhcCCeEEEE
Q 027662 61 SQAVHDGGRHVIGV 74 (220)
Q Consensus 61 a~gA~~~GG~viGi 74 (220)
++-+...+-.++||
T Consensus 81 a~~~~~~~~PilGI 94 (287)
T PRK14077 81 CRKAAEYDKFVLGI 94 (287)
T ss_pred HHHhcCCCCcEEEE
Confidence 55555555567777
No 103
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=44.03 E-value=1.3e+02 Score=25.80 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=40.7
Q ss_pred HHHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 101 RKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 101 Rk~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
....++..||++|.-. .|+|. =+.|++. .++|++..+..++-+ + +.......+.-..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~~e-~------------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGIPD-I------------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCChh-h------------eeCCCceEEeCCC
Confidence 4455788999877643 33333 3556554 479999887654322 1 1111123334455
Q ss_pred CHHHHHHHHHhhcC
Q 027662 179 TVKELVKKLEEYVP 192 (220)
Q Consensus 179 ~~ee~~~~l~~~~~ 192 (220)
|++++.+.|.+...
T Consensus 316 ~~~~~~~~l~~l~~ 329 (365)
T cd03825 316 DPEDLAEGIEWLLA 329 (365)
T ss_pred CHHHHHHHHHHHHh
Confidence 78888888877553
No 104
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=43.97 E-value=43 Score=30.31 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
|.+|+|++|......+.-...|+.+.+.|.+.||.++--
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 457888877766656666789999999999999998643
No 105
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=43.89 E-value=1.3e+02 Score=26.84 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=35.6
Q ss_pred cccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCCcChHHH
Q 027662 10 SKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNI------------------------------DLVYGGGSIGLMGL 59 (220)
Q Consensus 10 ~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~------------------------------~lv~GGg~~GlM~a 59 (220)
+++++|+|+.- .. .+...+.+.++.++|.+.|+ .+|+-||. |-|--
T Consensus 3 ~~~~~v~iv~~--~~-~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 78 (291)
T PRK02155 3 SQFKTVALIGR--YQ-TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLG 78 (291)
T ss_pred CcCCEEEEEec--CC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHH
Confidence 45677999832 22 34455566777766655433 24455664 77666
Q ss_pred HHHHHHhcCCeEEEE
Q 027662 60 VSQAVHDGGRHVIGV 74 (220)
Q Consensus 60 ~a~gA~~~GG~viGi 74 (220)
+++.....+-.++||
T Consensus 79 ~~~~~~~~~~pilGI 93 (291)
T PRK02155 79 IGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHhcCCCCCEEEE
Confidence 666555555566776
No 106
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.65 E-value=1.1e+02 Score=27.48 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNI 45 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~ 45 (220)
.|++|+|+. +. .++...+.+.++.++|.++|+
T Consensus 4 ~~~~i~ii~--~~-~~~~~~~~~~~l~~~L~~~g~ 35 (296)
T PRK04539 4 PFHNIGIVT--RP-NTPDIQDTAHTLITFLKQHGF 35 (296)
T ss_pred CCCEEEEEe--cC-CCHHHHHHHHHHHHHHHHCCC
Confidence 467899993 22 246666788888888876654
No 107
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=43.48 E-value=34 Score=26.16 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.8
Q ss_pred HHhhCCe--EEEecCCCCcHHHHHHHH
Q 027662 105 MAKHSDA--FIALPGGYGTLEELLEVI 129 (220)
Q Consensus 105 m~~~sDa--~VvlpGG~GTL~El~~~~ 129 (220)
+....+. .|++-||=||++|+...+
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHH
Confidence 3444443 888899999999998765
No 108
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.43 E-value=83 Score=24.72 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 31 DAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 31 ~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
..+.-+...|...||.|++-|.. =-.+.+++.|.+.+..+||+
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45566778888899999998875 55688889999999999999
No 109
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=43.41 E-value=31 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
+|.|+.+|..++.. +.|+.+.+.|...|+.+
T Consensus 2 ~i~IiY~S~tGnTe---~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 2 RILLAYLSLSGNTE---EVAFMIQDYLQKDGHEV 32 (140)
T ss_pred eEEEEEECCCChHH---HHHHHHHHHHhhCCeeE
Confidence 56666678777543 56777777776666543
No 110
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=43.39 E-value=1e+02 Score=22.69 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHHHhhCCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 101 RKAEMAKHSDAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 101 Rk~~m~~~sDa~Vvlp-GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
....++..+|+.|..- =+.++-.-++|++. .++|++..+. + +.. +....... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~------------~~~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEG------------IVEEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHC------------HS---SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhh------------heeecCCe-EEECCC
Confidence 3455677899777532 13356666777663 5799998754 2 222 12122233 344999
Q ss_pred HHHHHHHHHhhc
Q 027662 180 VKELVKKLEEYV 191 (220)
Q Consensus 180 ~ee~~~~l~~~~ 191 (220)
++++.+.|.+.+
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 111
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.27 E-value=67 Score=28.27 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEE
Q 027662 26 KSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVI 72 (220)
Q Consensus 26 ~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~vi 72 (220)
.-.|.+.|-.+-+-+|.+|=.+++=|-+.|-++.+.+.|.++||..+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCcee
Confidence 45788999999999998754454444566999999999999998754
No 112
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.35 E-value=1.4e+02 Score=26.74 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 027662 10 SKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNI 45 (220)
Q Consensus 10 ~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~ 45 (220)
++|++|+|+. +.. ++...+.+.++.++|.++|+
T Consensus 3 ~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~g~ 35 (292)
T PRK03378 3 NHFKCIGIVG--HPR-HPTALTTHEMLYHWLTSKGY 35 (292)
T ss_pred ccCCEEEEEE--eCC-CHHHHHHHHHHHHHHHHCCC
Confidence 4577899993 222 45666778888888866553
No 113
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=42.10 E-value=80 Score=27.77 Aligned_cols=69 Identities=20% Similarity=0.081 Sum_probs=36.3
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHhCC-CCCcEEEEe---CCCcchHHHHHHHHHHHcCCCCccccccE--EEcCCHHHHH
Q 027662 111 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKAVEEGFISPSARQII--VSAPTVKELV 184 (220)
Q Consensus 111 a~VvlpGG~GTL~El~~~~~~~qlg~-~~kPiill~---~~g~w~~l~~~l~~~~~~g~i~~~~~~~i--~~~~~~ee~~ 184 (220)
|+|+|-||.|| ++|. .+||.+=+. ..-+.+-..+.+..+... +-.......+ ....+.+++.
T Consensus 2 a~viLaGG~Gt-----------RLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~-~~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGT-----------RLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEI-DLYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCcc-----------ccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHH-hhcCCCCCEEEEcCchhHHHHH
Confidence 68999999999 3343 467666443 333555555544432210 0001111222 2234566788
Q ss_pred HHHHhhc
Q 027662 185 KKLEEYV 191 (220)
Q Consensus 185 ~~l~~~~ 191 (220)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8888754
No 114
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=41.88 E-value=55 Score=28.19 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=24.7
Q ss_pred hhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 7 VQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 7 ~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
-|..|+++|.+++||.+.. ..-...|+.+.+.+...|+.+
T Consensus 21 ~~~~~~~kI~~I~GSlR~~-S~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 21 THKPHIPRILLLYGSLRER-SYSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCCCEEEEEECCCCCc-chHHHHHHHHHHHHhhcCCEE
Confidence 4566778888888887753 233345565655555455544
No 115
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.88 E-value=1.4e+02 Score=25.76 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEe
Q 027662 31 DAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVI 75 (220)
Q Consensus 31 ~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~ 75 (220)
+.++++++.|-.+|..+|+..+ .|. .+.+.|.+.|..+||+-
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~-~~~--g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHT-DSP--GVIQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecC-CCh--HHHHHHHHhCCEEEeec
Confidence 4667788888888999998875 232 45567778899999993
No 116
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.48 E-value=1.2e+02 Score=27.42 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
|++|+|+.- .. .+...+.+.++.++|.++|+.+
T Consensus 1 m~~igiv~n--~~-~~~~~~~~~~l~~~L~~~g~~v 33 (305)
T PRK02649 1 MPKAGIIYN--DG-KPLAVRTAEELQDKLEAAGWEV 33 (305)
T ss_pred CCEEEEEEc--CC-CHHHHHHHHHHHHHHHHCCCEE
Confidence 567899832 22 4555677888888887666433
No 117
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=41.34 E-value=64 Score=28.35 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=10.2
Q ss_pred HHhhCCeEEEecCCCCc
Q 027662 105 MAKHSDAFIALPGGYGT 121 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GT 121 (220)
.++... +|++.||.|.
T Consensus 121 ~l~~gr-VvIf~gGtg~ 136 (238)
T COG0528 121 HLEKGR-VVIFGGGTGN 136 (238)
T ss_pred HHHcCC-EEEEeCCCCC
Confidence 344444 7888887663
No 118
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=41.30 E-value=58 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=22.2
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCC----eEEEEeCC
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGR----HVIGVIPK 77 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG----~viGi~P~ 77 (220)
.||..||. |....+..+..+... ..+|++|.
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 55556674 988888888776554 46899885
No 119
>PRK13057 putative lipid kinase; Reviewed
Probab=40.95 E-value=59 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 33 AIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 33 A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
|.++.+.+.+.--.||..|| .|-...++.+.... +..+||+|.
T Consensus 40 a~~~~~~~~~~~d~iiv~GG-DGTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAYADGVDLVIVGGG-DGTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHHcCCCEEEEECc-hHHHHHHHHHHhcC-CCcEEEECC
Confidence 44455543332224556667 59999999988764 467999994
No 120
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.89 E-value=58 Score=28.31 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHH
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF 156 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~ 156 (220)
||+.+++.+....-.-...||+|+ |||+|++.+
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888876443221135799998 599999875
No 121
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=40.82 E-value=67 Score=24.69 Aligned_cols=38 Identities=29% Similarity=0.546 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH----CCCeEE-E--cCC-CcChHHHHHHHHHhcC
Q 027662 31 DAAIELGKELVS----RNIDLV-Y--GGG-SIGLMGLVSQAVHDGG 68 (220)
Q Consensus 31 ~~A~~lG~~LA~----~G~~lv-~--GGg-~~GlM~a~a~gA~~~G 68 (220)
+.|+.+|+.||+ .|+.=| + ||. ..|-+.|++++|.++|
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~G 106 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAG 106 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 578888988886 454333 2 321 2588999999999987
No 122
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=40.52 E-value=1.2e+02 Score=28.62 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCC---cChHHHHHHHHHhcCC--eEEEEeCCcccCCCCCCCCCceeeecCCHH-
Q 027662 31 DAAIELGKELVS-----RNIDLVYGGGS---IGLMGLVSQAVHDGGR--HVIGVIPKTLMPRELTGETVGEVKAVADMH- 99 (220)
Q Consensus 31 ~~A~~lG~~LA~-----~G~~lv~GGg~---~GlM~a~a~gA~~~GG--~viGi~P~~~~~~e~~~~~~~~~~~~~~m~- 99 (220)
+.|..++..+|+ .+...++||-. +=||.|+...+.+.+- +++.+....+. +.+.....-..|.
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 567778888887 46677777632 2269999999999876 45555322110 1111111123442
Q ss_pred HHHHHHHhhCCeEEE-----ecCCCCcHHHHHHHHHHHHhCCCCCcEEE
Q 027662 100 QRKAEMAKHSDAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGL 143 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vv-----lpGG~GTL~El~~~~~~~qlg~~~kPiil 143 (220)
-|+. . +.|++++ +.|.-.|.+|+|.... .+...+|-|++
T Consensus 170 Fk~~--y-~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvl 213 (408)
T COG0593 170 FKEK--Y-SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVL 213 (408)
T ss_pred HHHh--h-ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEE
Confidence 2333 2 7887765 6788899999998764 33334554444
No 123
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=40.38 E-value=62 Score=24.92 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
+.|+|+ |+..+.... ..|..|++.||+.|..++
T Consensus 1 k~i~v~-s~~~g~G~t--~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVW-SPKGGVGKT--TLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEE-ESSTTSSHH--HHHHHHHHHHHHTTT-EE
T ss_pred CEEEEE-CCCCCCCHH--HHHHHHHHHHHhcCCCeE
Confidence 367888 433333322 477889999999886544
No 124
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=40.30 E-value=1.4e+02 Score=25.13 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCeEEEecC-----CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccE
Q 027662 100 QRKAEMAKHSDAFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQII 174 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpG-----G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 174 (220)
+...-++..||++|.... |.+.-.=+.|++. .++|++..+..+.-+.+. + .....+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~~~~~--------~-----~~~g~~ 346 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESAELVE--------E-----AGAGLV 346 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCchhhhc--------c-----CCcceE
Confidence 344457788998876532 2233334566664 479999887654322111 1 122234
Q ss_pred EEcCCHHHHHHHHHhhc
Q 027662 175 VSAPTVKELVKKLEEYV 191 (220)
Q Consensus 175 ~~~~~~ee~~~~l~~~~ 191 (220)
+-.+|++++.+.|.+..
T Consensus 347 ~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 347 VPPGDPEALAAAILELL 363 (394)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 44558999988888765
No 125
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=40.21 E-value=1.5e+02 Score=27.51 Aligned_cols=93 Identities=25% Similarity=0.205 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHH----CCCeEEEcCCCcChHHHHHH-HHHhcCCeEEEEeCCcc-cCCCCCCCCCceeee--------cC
Q 027662 31 DAAIELGKELVS----RNIDLVYGGGSIGLMGLVSQ-AVHDGGRHVIGVIPKTL-MPRELTGETVGEVKA--------VA 96 (220)
Q Consensus 31 ~~A~~lG~~LA~----~G~~lv~GGg~~GlM~a~a~-gA~~~GG~viGi~P~~~-~~~e~~~~~~~~~~~--------~~ 96 (220)
+.|.++..-||+ .|+.|| ||= +=.|--.-+ +=.+.-|.++|+..... .+.+.. .-.++++ ..
T Consensus 114 ~~~~~iv~GiaeGc~~ag~aLv-GGE-TAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i--~~GDviigl~SSG~HSN 189 (345)
T COG0150 114 EVAAQIVKGIAEGCKQAGCALV-GGE-TAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKV--KEGDVIIGLASSGLHSN 189 (345)
T ss_pred HHHHHHHHHHHHHHHHhCCEEe-ccc-cccCCCcccCCceeeeeeEEEEEEcccccccccc--CCCCEEEEecCCCcCCC
Confidence 466778888876 799988 554 344433323 23566789999976332 221110 1123332 23
Q ss_pred CH-HHHHHHHHhhCCeEEEecCCCC-cHHHHHH
Q 027662 97 DM-HQRKAEMAKHSDAFIALPGGYG-TLEELLE 127 (220)
Q Consensus 97 ~m-~~Rk~~m~~~sDa~VvlpGG~G-TL~El~~ 127 (220)
++ -.||.+....-+.---+|...| ||-|.+.
T Consensus 190 GySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL 222 (345)
T COG0150 190 GYSLVRKIIEESGLDYDDELPEELGKTLGEELL 222 (345)
T ss_pred chHHHHHHHHhcCccccccCccccccCHHHHhc
Confidence 44 3788765533333345788777 8777654
No 126
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.09 E-value=1.5e+02 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=15.5
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
.+++-||. |-+-.+++.....+-.++||
T Consensus 60 ~vi~~GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 60 LAIVLGGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred EEEEECCc-HHHHHHHHHhccCCCCEEEE
Confidence 34445564 88877777665443333333
No 127
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=40.08 E-value=36 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=17.1
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEE
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVI 72 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~vi 72 (220)
.|+|||+. |+=-+.++...+.|-.||
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VI 33 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEE
Confidence 35566663 777777777777776654
No 128
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=40.03 E-value=59 Score=25.14 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
|+|.|+.||.+.+. .-...|+.+.+.+.+.|+.+
T Consensus 1 Mkilii~gS~r~~~-~t~~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 1 MKILIINGSPRKNS-NTRKLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp -EEEEEESSSSTTS-HHHHHHHHHHHHHHHTTEEE
T ss_pred CEEEEEECcCCCCC-HHHHHHHHHHHHHHHcCCEE
Confidence 45666667765433 33357777777777766554
No 129
>PRK09267 flavodoxin FldA; Validated
Probab=40.01 E-value=31 Score=27.58 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=18.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELV 41 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA 41 (220)
||+|.|+.+|..++.. +.|+.+++.|.
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 4678888899888553 45666766664
No 130
>PRK13937 phosphoheptose isomerase; Provisional
Probab=40.01 E-value=90 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCCcCh
Q 027662 26 KSSYQDAAIELGKELVSRNIDLVYGGGSIGL 56 (220)
Q Consensus 26 ~~~~~~~A~~lG~~LA~~G~~lv~GGg~~Gl 56 (220)
.+...+.|+++.+.|.+.+...++|-|..+.
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 3667789999999999999999999887554
No 131
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=39.93 E-value=80 Score=27.98 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHH-hCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 99 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~q-lg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
..|....++.+|.+|+ +||--.+.-+..+.+ ...++.|++++|.+... .+. .-.+.+.
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~---------------~~~--~~~~~i~ 263 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTR---------------ADP--LLTLKVE 263 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCC---------------CCc--ceeEEEe
Confidence 4556667788998888 555555443332222 22356799999975321 110 0136778
Q ss_pred CCHHHHHHHHHhhcC
Q 027662 178 PTVKELVKKLEEYVP 192 (220)
Q Consensus 178 ~~~ee~~~~l~~~~~ 192 (220)
.+..|+++.|.+.+.
T Consensus 264 g~~~evL~~l~~~l~ 278 (285)
T PRK05333 264 ASCAQALAALVARLG 278 (285)
T ss_pred CCHHHHHHHHHHHhC
Confidence 899999999977553
No 132
>PRK07308 flavodoxin; Validated
Probab=39.87 E-value=38 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNID 46 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~ 46 (220)
+.|.|+.+|..++.. +.|+.+++.|.+.|+.
T Consensus 2 ~~~~IvY~S~tGnTe---~iA~~ia~~l~~~g~~ 32 (146)
T PRK07308 2 ALAKIVYASMTGNTE---EIADIVADKLRELGHD 32 (146)
T ss_pred ceEEEEEECCCchHH---HHHHHHHHHHHhCCCc
Confidence 346666677766443 4566677776665543
No 133
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.81 E-value=29 Score=32.34 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=18.1
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
.||.|||+.|++.|+ .|.++|-+|+=|-+.
T Consensus 2 VVVvGgG~aG~~AAi--~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAI--AAARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE--SHHHHHHHH--HHHHTTS-EEEE-SS
T ss_pred EEEECccHHHHHHHH--HHHHCCCEEEEEECC
Confidence 478899998887665 355667777777443
No 134
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=39.63 E-value=1.9e+02 Score=25.62 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCcEEEEe-CCCcchHHHHHHHHHHHcCCCCccccccEE
Q 027662 99 HQRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNSLLSFIDKAVEEGFISPSARQIIV 175 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~-~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 175 (220)
.+....+...+|++|.-.- |+| .=+.|+++ .++||+..+ .+| ..++ +.+ .....++
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~--~~~lEAma------~G~Pvv~s~~~~g-~~ei-------v~~-----~~~G~lv 306 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFP--MTLLEAMS------YGIPCISSDCMSG-PRDI-------IKP-----GLNGELY 306 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcC--hHHHHHHH------cCCCEEEeCCCCC-hHHH-------ccC-----CCceEEE
Confidence 3444445667898885432 333 23556554 479999988 443 3222 212 1223455
Q ss_pred EcCCHHHHHHHHHhhcCCc
Q 027662 176 SAPTVKELVKKLEEYVPCH 194 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~~~~ 194 (220)
-.+|++++.+.|.+.....
T Consensus 307 ~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 307 TPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CCCCHHHHHHHHHHHHhCc
Confidence 5689999999999876543
No 135
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=39.47 E-value=92 Score=25.91 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 102 KAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 102 k~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
...++..||++|... .|.|+ =++|++. .++|++..+..++- .+ + .......++-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~------~g~pvI~~~~~~~~-~~---~---------~~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMA------AGLPVVASDVGGIP-EV---V---------EDGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHH------cCCcEEEeCCCChh-HH---h---------cCCcceEEeCCCC
Confidence 444677899876543 23332 2445553 46999987754332 21 1 1112234455556
Q ss_pred HHHHHHHHHhhc
Q 027662 180 VKELVKKLEEYV 191 (220)
Q Consensus 180 ~ee~~~~l~~~~ 191 (220)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 899988888754
No 136
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=39.47 E-value=38 Score=27.84 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=16.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHH
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIE 35 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~ 35 (220)
|++|||||||=.+...-+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 568999999977655555444443
No 137
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=39.22 E-value=1.3e+02 Score=25.70 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHH
Q 027662 103 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKE 182 (220)
Q Consensus 103 ~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 182 (220)
..++..||++|.-...-|.-.=++|++. .++|++..+..+. . ++ +.+ ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~~-~---e~---------i~~--~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGGV-R---EV---------VGD--SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCCh-h---hE---------ecC--CceEeCCCCHHH
Confidence 3467889987664432122223566664 3699998765322 1 11 111 234556789999
Q ss_pred HHHHHHhhc
Q 027662 183 LVKKLEEYV 191 (220)
Q Consensus 183 ~~~~l~~~~ 191 (220)
+.+.|.+..
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 999888874
No 138
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=39.20 E-value=2.7e+02 Score=24.60 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=64.0
Q ss_pred hhhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCC
Q 027662 6 EVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV-YGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPREL 84 (220)
Q Consensus 6 ~~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~ 84 (220)
|....+.-++=|++..... -|+- ...-+-.+.|++.|+.++ |..- -+. .++...+.|-..+ .| .-.+..
T Consensus 87 e~~~~~~iKlEVi~d~~~L-lpd~-~~tv~aa~~L~~~Gf~vlpyc~d--d~~--~ar~l~~~G~~~v--mP-lg~pIG- 156 (248)
T cd04728 87 EALGTDWIKLEVIGDDKTL-LPDP-IETLKAAEILVKEGFTVLPYCTD--DPV--LAKRLEDAGCAAV--MP-LGSPIG- 156 (248)
T ss_pred HHhCCCeEEEEEecCcccc-ccCH-HHHHHHHHHHHHCCCEEEEEeCC--CHH--HHHHHHHcCCCEe--CC-CCcCCC-
Confidence 3344455567788555443 2333 244667788889999999 7653 333 3455556665544 33 111111
Q ss_pred CCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHH
Q 027662 85 TGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVIT 130 (220)
Q Consensus 85 ~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~ 130 (220)
.+ .. ..+ .+.-+.+.+..+.-|+..||+||.++...++.
T Consensus 157 -sg-~G----i~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 157 -SG-QG----LLN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred -CC-CC----CCC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 11 10 111 33334566667899999999999999998875
No 139
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=39.14 E-value=78 Score=29.83 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----CcchHHHHHHHH
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 159 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 159 (220)
.|+|||.-| .-||+|-..++.++- .-.+||||+.+.. --.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l-~~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMF-ETLPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHh-hCCCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689998885 899999998887643 2237999998643 234566666544
No 140
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=39.09 E-value=2.2e+02 Score=24.68 Aligned_cols=126 Identities=24% Similarity=0.326 Sum_probs=60.1
Q ss_pred EEEcCCCcChHHHH---HHHHHhcC-CeEEEEeCCcccCC-CCCCCCCceeeecCCH--HHHHHHHHhhCCeEEEecCCC
Q 027662 47 LVYGGGSIGLMGLV---SQAVHDGG-RHVIGVIPKTLMPR-ELTGETVGEVKAVADM--HQRKAEMAKHSDAFIALPGGY 119 (220)
Q Consensus 47 lv~GGg~~GlM~a~---a~gA~~~G-G~viGi~P~~~~~~-e~~~~~~~~~~~~~~m--~~Rk~~m~~~sDa~VvlpGG~ 119 (220)
+|.||.. +..+|+ +++|+..| |.|.-+.|....+. ....++.. +..-.. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~m--~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEAM--VSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTSE--EEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCceeE--EecccchhhhhhHhhhccCCEEEeecC-C
Confidence 5667764 777766 56666665 67776666533210 00112111 111111 1122234577897777665 5
Q ss_pred CcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHhh
Q 027662 120 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEY 190 (220)
Q Consensus 120 GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 190 (220)
|+-++..+.+.. +-...+|+ +++-++. .++ .... ......++++..+-|+-+.+...
T Consensus 78 g~~~~~~~~~~~--~~~~~~p~-VlDADaL-----~~l---~~~~---~~~~~~~IlTPH~gE~~rL~~~~ 134 (242)
T PF01256_consen 78 GRDEETEELLEE--LLESDKPL-VLDADAL-----NLL---AENP---KKRNAPVILTPHPGEFARLLGKS 134 (242)
T ss_dssp SSSHHHHHHHHH--HHHHCSTE-EEECHHH-----HCH---HHCC---CCSSSCEEEE-BHHHHHHHHTTT
T ss_pred CCchhhHHHHHH--HHhhcceE-EEehHHH-----HHH---Hhcc---ccCCCCEEECCCHHHHHHHhCCc
Confidence 666664443322 11236784 4565322 111 1111 33456688888898888766543
No 141
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=39.04 E-value=3.4e+02 Score=25.62 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=74.7
Q ss_pred ccceEEEEcCCCCC-CChHHHHHHHHHHHHHHH---CCCeEEEcCCC-cChHHHHHHHHH-h-cCC----eEEEEeCCcc
Q 027662 11 KFKRICVFCGSSQG-KKSSYQDAAIELGKELVS---RNIDLVYGGGS-IGLMGLVSQAVH-D-GGR----HVIGVIPKTL 79 (220)
Q Consensus 11 ~~~~I~V~ggS~~~-~~~~~~~~A~~lG~~LA~---~G~~lv~GGg~-~GlM~a~a~gA~-~-~GG----~viGi~P~~~ 79 (220)
|..++-|--..... ++..|- -||..+.+ .++.+++|... ...-..=+-+|. . .|+ ++.||+|+..
T Consensus 180 R~~~~~v~v~~~~~~d~~~~~----~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa~ 255 (400)
T PF04412_consen 180 RRATILVEVEAPPEEDDADWG----LLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPEAP 255 (400)
T ss_pred CCCeEEEEeCCCCCcCcchHH----HHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCCCC
Confidence 33455555443332 334443 35555544 48999998764 233333233332 2 343 5789999754
Q ss_pred cCCCCCCCCCceeeec-CCH-HHHHHHH-HhhCCe-EEEecCCCCcHHHHHHHHHHHHhCC--CCCcEEEEeCCCcchHH
Q 027662 80 MPRELTGETVGEVKAV-ADM-HQRKAEM-AKHSDA-FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLNVDGYYNSL 153 (220)
Q Consensus 80 ~~~e~~~~~~~~~~~~-~~m-~~Rk~~m-~~~sDa-~VvlpGG~GTL~El~~~~~~~qlg~--~~kPiill~~~g~w~~l 153 (220)
.....-......+.+. .++ ..++.+- ....+. +|+|+-=-=|++|+.++..+..-.. .++|+++.-.-..++..
T Consensus 256 ~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~~~a 335 (400)
T PF04412_consen 256 TLEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVYELA 335 (400)
T ss_pred cchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHHHHH
Confidence 2221111112223232 233 2222220 122233 5556555689999999877655333 36788887554444444
Q ss_pred HH--HHHHHHHcC
Q 027662 154 LS--FIDKAVEEG 164 (220)
Q Consensus 154 ~~--~l~~~~~~g 164 (220)
.+ +.+.+.+.|
T Consensus 336 ~~~G~~~~le~~G 348 (400)
T PF04412_consen 336 ERMGYVERLEKAG 348 (400)
T ss_pred HhCCHHHHHHHcC
Confidence 44 445554444
No 142
>PRK08862 short chain dehydrogenase; Provisional
Probab=38.99 E-value=1.5e+02 Score=24.79 Aligned_cols=54 Identities=7% Similarity=-0.026 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
+++.|.|+|+ + ..+++++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 4677776654 2 3456777888888887765433233333344444445554443
No 143
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=38.96 E-value=1.1e+02 Score=28.98 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCcc
Q 027662 100 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPS 169 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~ql-g~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~ 169 (220)
-|+-+=...++++++-|=-+|||.|.+++..+.+- |+ +||+-...+.=-|..++-|.-....|+|...
T Consensus 319 l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy--~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 319 LKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGY--TAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCC--eEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 45555566789999999999999999999987752 23 6777765443345555544444455666533
No 144
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=38.96 E-value=2.6e+02 Score=24.15 Aligned_cols=84 Identities=19% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHhhCCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCcEEE-EeCCCcc--hHHHHHHHHHHHcCCCCccccccEE----E
Q 027662 105 MAKHSDAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGL-LNVDGYY--NSLLSFIDKAVEEGFISPSARQIIV----S 176 (220)
Q Consensus 105 m~~~sDa~Vvlp-GG~GTL~El~~~~~~~qlg~~~kPiil-l~~~g~w--~~l~~~l~~~~~~g~i~~~~~~~i~----~ 176 (220)
.+..+|+++.+- ..-+...+ ..++ .++...++|+++ +|..+-. +.+.+.++.+....-. ...+. -
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~--~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~v~~iSA~~ 148 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVL--TKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF----KDIVPISALT 148 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHH--HHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC----CceEEEecCC
Confidence 356899766663 33333332 1112 223335678765 4654432 2233333333221111 01221 1
Q ss_pred cCCHHHHHHHHHhhcCCcc
Q 027662 177 APTVKELVKKLEEYVPCHE 195 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~~~~~ 195 (220)
-...+++++.|.++.++..
T Consensus 149 g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCCHHHHHHHHHHhCCCCC
Confidence 3578999999999887653
No 145
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=38.74 E-value=55 Score=28.52 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
++|+|.+|+.......-.+.++++-++|.+.||.++.=
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i 42 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI 42 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE
Confidence 47888877655543333457899999999999997543
No 146
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=38.40 E-value=60 Score=29.16 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
+++|+|.+|......+.-...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 4578887777665566666899999999999999875
No 147
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=38.31 E-value=3.4e+02 Score=25.34 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=47.2
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHH
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEE 124 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~E 124 (220)
...++. + |.|+.....+...-=+++++.|... .+.- .++... -+.|+++.=.+|++-||=||.--
T Consensus 51 ~~flt~--p-~~mG~~~~~~~~~~~~v~~~~~~~~------~tTa-----~DT~~~-~r~~~~~gVdlIvfaGGDGTarD 115 (355)
T COG3199 51 VEFLTP--P-GPMGESLAEASGFKYRVIRFQESTP------RTTA-----EDTINA-VRRMVERGVDLIVFAGGDGTARD 115 (355)
T ss_pred eEEEeC--C-cccchhHHHhhcCcceEEeecccCC------CccH-----HHHHHH-HHHHHhcCceEEEEeCCCccHHH
Confidence 445664 4 7788777666666667777543221 0100 011111 12367766679999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEE
Q 027662 125 LLEVITWAQLGIHDKPVGLL 144 (220)
Q Consensus 125 l~~~~~~~qlg~~~kPiill 144 (220)
+.++.. .+.||+-+
T Consensus 116 Va~av~------~~vPvLGi 129 (355)
T COG3199 116 VAEAVG------ADVPVLGI 129 (355)
T ss_pred HHhhcc------CCCceEee
Confidence 987751 34677654
No 148
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=38.27 E-value=72 Score=27.53 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=34.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
||+++|+ |... .-..|++.+++.||.++.|+. .-.++....+.+.+..++|-
T Consensus 1 m~~~~i~-GtGn--------iG~alA~~~a~ag~eV~igs~--r~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAII-GTGN--------IGSALALRLAKAGHEVIIGSS--RGPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEe-ccCh--------HHHHHHHHHHhCCCeEEEecC--CChhHHHHHHHhhccccccC
Confidence 5678888 5432 225688999999999999875 44555555555555554443
No 149
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=38.23 E-value=65 Score=28.22 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=26.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVY 49 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 49 (220)
+|+|.+|......+.-...++++.+.|.+.||.++.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~ 37 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTV 37 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEE
Confidence 577766655544555567999999999999998643
No 150
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.19 E-value=86 Score=27.33 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=23.1
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCC-eEEEEeCC
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGR-HVIGVIPK 77 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG-~viGi~P~ 77 (220)
.||.-|| .|-.-.++++...... ..+|++|.
T Consensus 60 ~ivv~GG-DGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGG-DGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECC-CChHHHHHHHHhcCCCCCcEEEEcC
Confidence 4556667 4999999998876443 47999985
No 151
>PRK12359 flavodoxin FldB; Provisional
Probab=37.87 E-value=81 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCeEEEEeCCccc
Q 027662 58 GLVSQAVHDGGRHVIGVIPKTLM 80 (220)
Q Consensus 58 ~a~a~gA~~~GG~viGi~P~~~~ 80 (220)
+...+-..+.|+.+||-.|..-+
T Consensus 102 ~~l~~~l~~~Ga~ivG~~~~~gY 124 (172)
T PRK12359 102 GMLHDKLAPKGVKFVGYWPTEGY 124 (172)
T ss_pred HHHHHHHHhCCCeEEeeEeCCCc
Confidence 34444444566677777665443
No 152
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.86 E-value=55 Score=25.19 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=18.6
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEEe
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGVI 75 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi~ 75 (220)
.||+||+. |+=.++++...+.|+.++.++
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 46777764 777777777777766554443
No 153
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=37.78 E-value=56 Score=28.96 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=37.9
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCe--EEEEe
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRH--VIGVI 75 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~--viGi~ 75 (220)
....+-||-. ++ ..++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+-
T Consensus 163 v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 163 VNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp EEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred EEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 3444545432 44 57788999999999999998332 4555667888888877 99984
No 154
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=37.64 E-value=1.1e+02 Score=23.61 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 027662 99 HQRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS 176 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 176 (220)
.+....++..||++|...- |+|+ =+.|++. .++|+++-+.. .+.. .+.++ ....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e-------~~~~~-----~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNE-------IINDG-----VNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHH-------HSGTT-----TSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCce-------eeccc-----cceEEeC
Confidence 4556668888998887743 3333 3555554 46899987743 3222 22122 2345566
Q ss_pred cCCHHHHHHHHHhhcC
Q 027662 177 APTVKELVKKLEEYVP 192 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~~ 192 (220)
..|++++.+.|.+...
T Consensus 142 ~~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 142 PNDIEELADAIEKLLN 157 (172)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC
Confidence 7788999999987653
No 155
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=37.59 E-value=25 Score=31.15 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=22.3
Q ss_pred HHHHHHHCCCeEEEcCCCcChHHHHHHHHHh
Q 027662 36 LGKELVSRNIDLVYGGGSIGLMGLVSQAVHD 66 (220)
Q Consensus 36 lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 66 (220)
|+|.|+.+...||.+|| |.=++++-|+++
T Consensus 2 lar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 2 LARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred hhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 77888888888888876 777777766664
No 156
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=37.52 E-value=32 Score=29.70 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=28.0
Q ss_pred HHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchH
Q 027662 104 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 152 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 152 (220)
-+++.||++|.+-+.+|= |++. ++|||++++.. ||+.
T Consensus 195 ~Ll~~s~~VvtinStvGl-----EAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVGL-----EALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHhCCEEEEECCHHHH-----HHHH------cCCceEEecCc-ccCC
Confidence 578999999999988774 4442 58999999753 6653
No 157
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=37.45 E-value=1.5e+02 Score=26.72 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHhhCCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 100 QRKAEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
+....++..||++|.. +.|.|. =++|+++ .++|||.-+..|. .++ +.......++-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~----~e~---------i~~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV----REV---------ITDGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc----hhh---------cccCCceEEcCC
Confidence 3444577899988864 344442 2556664 4799998776433 121 111122334445
Q ss_pred CCHHHHHHHHHhhcC
Q 027662 178 PTVKELVKKLEEYVP 192 (220)
Q Consensus 178 ~~~ee~~~~l~~~~~ 192 (220)
+|++++.+.|.+...
T Consensus 351 ~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 FDPDALAAAVIELLD 365 (396)
T ss_pred CCHHHHHHHHHHHHh
Confidence 689988888877654
No 158
>PRK06443 chorismate mutase; Validated
Probab=37.21 E-value=58 Score=27.35 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeC
Q 027662 28 SYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIP 76 (220)
Q Consensus 28 ~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P 76 (220)
.|...|+.||..+...||.|+- . -+....-.|+..+||+++-=.|
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i---~-~~~~~~~~~~~~~~~~~~~~~~ 135 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYI---E-DNPDSIEEGCSKAGGHVVIGLP 135 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEe---c-cCchHHHHhhhhcCCeEecCCC
Confidence 4778999999999999999763 2 3677778888899998653334
No 159
>PRK00208 thiG thiazole synthase; Reviewed
Probab=37.15 E-value=3e+02 Score=24.41 Aligned_cols=109 Identities=12% Similarity=0.201 Sum_probs=65.6
Q ss_pred hhhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCC
Q 027662 6 EVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV-YGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPREL 84 (220)
Q Consensus 6 ~~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~ 84 (220)
|....+.-++=|++..... -|+- ....+-.+.|++.|+.++ |..- -+. .++...+.|-..+ .| .-.+..
T Consensus 87 e~~~~~~iKlEVi~d~~~l-lpd~-~~tv~aa~~L~~~Gf~vlpyc~~--d~~--~ak~l~~~G~~~v--mP-lg~pIG- 156 (250)
T PRK00208 87 EALGTNWIKLEVIGDDKTL-LPDP-IETLKAAEILVKEGFVVLPYCTD--DPV--LAKRLEEAGCAAV--MP-LGAPIG- 156 (250)
T ss_pred HHhCCCeEEEEEecCCCCC-CcCH-HHHHHHHHHHHHCCCEEEEEeCC--CHH--HHHHHHHcCCCEe--CC-CCcCCC-
Confidence 3444455677788655443 2333 245667788889999999 7653 333 3444555565544 33 111111
Q ss_pred CCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHH
Q 027662 85 TGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITW 131 (220)
Q Consensus 85 ~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~ 131 (220)
.+ .. ..+ .+..+.+.+..+.-|+..||++|.++...++.+
T Consensus 157 -sg-~g----i~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel 196 (250)
T PRK00208 157 -SG-LG----LLN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL 196 (250)
T ss_pred -CC-CC----CCC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 11 00 111 444666677678999999999999999998753
No 160
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=37.13 E-value=33 Score=32.45 Aligned_cols=27 Identities=37% Similarity=0.716 Sum_probs=19.9
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
.+|-|||+.|+|.|+.- .++|.+|+=|
T Consensus 6 viIIGgGpAGlMaA~~a--a~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISA--AKAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHH--hhcCCEEEEE
Confidence 46779999999987654 3467676655
No 161
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=36.76 E-value=57 Score=29.45 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=29.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
+++|+|.+|......+.-...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 3578887777666667777899999999999999986
No 162
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=36.63 E-value=1.6e+02 Score=25.21 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCeEEEecCC------CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCcccccc
Q 027662 100 QRKAEMAKHSDAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQI 173 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpGG------~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~ 173 (220)
+...-++..||++|...-. -|.-.=++|++. .++|++..+..+.- .+. .. .....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~~-~~i-------~~-----~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGIP-ELV-------ED-----GETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCcc-hhh-------hC-----CCceE
Confidence 4555677889977764221 222234666664 47999987654332 211 11 11223
Q ss_pred EEEcCCHHHHHHHHHhhcC
Q 027662 174 IVSAPTVKELVKKLEEYVP 192 (220)
Q Consensus 174 i~~~~~~ee~~~~l~~~~~ 192 (220)
++-.+|++++.+.|.+...
T Consensus 308 ~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPPGDPEALADAIERLLD 326 (355)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 3334589999888887653
No 163
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=36.61 E-value=2.2e+02 Score=25.33 Aligned_cols=72 Identities=22% Similarity=0.419 Sum_probs=38.8
Q ss_pred HHHHHHCCCeEEE---cCCC-cChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeE
Q 027662 37 GKELVSRNIDLVY---GGGS-IGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAF 112 (220)
Q Consensus 37 G~~LA~~G~~lv~---GGg~-~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~ 112 (220)
-+.|-+....+|+ |||. .|.--.+++-+.+.|-.+++|.|..+. .|.. .....=...-..|.+.+|.+
T Consensus 79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~-------~~~~nA~~~l~~L~~~~d~~ 150 (304)
T cd02201 79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGK-------KRMRQAEEGLEELRKHVDTL 150 (304)
T ss_pred HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hHHHHHHHHHHHHHHhCCEE
Confidence 3344334555554 5553 245555677888888888888653221 1100 00011123344467788888
Q ss_pred EEec
Q 027662 113 IALP 116 (220)
Q Consensus 113 Vvlp 116 (220)
|+++
T Consensus 151 ivid 154 (304)
T cd02201 151 IVIP 154 (304)
T ss_pred EEEe
Confidence 8887
No 164
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=36.34 E-value=42 Score=29.85 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 147 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~ 147 (220)
++..||++++|+-..=+++-+-.+. +....++||.++|++
T Consensus 243 ~v~e~dg~LvlGsSL~v~Sg~r~i~---~a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 243 KVKECDGFLVLGSSLMVLSGFRFIR---HAHEKKKPIAIVNIG 282 (305)
T ss_pred HHhccCceEEechhHHHHHHHHHHH---HHHhhcCcEEEEecC
Confidence 5678999999977666665544332 122357999999985
No 165
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=36.05 E-value=1.9e+02 Score=26.20 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCeEEEe---cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEE-
Q 027662 100 QRKAEMAKHSDAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV- 175 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvl---pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~- 175 (220)
+....++..||++|.- ..|+|.. +.|+++ .++||+.-+.+|. ..+ +.+| ....+.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~Ei-------v~~~-----~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-TEF-------VLEG-----ITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-Hhh-------cccC-----CceEEEe
Confidence 3445578899988862 2455543 556664 4799999876543 221 1111 112222
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027662 176 SAPTVKELVKKLEEYVP 192 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~~ 192 (220)
-..|++++.+.|.+...
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 24588888888877654
No 166
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.04 E-value=1.8e+02 Score=24.68 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE--EcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCC--CCCC
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV--YGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRE--LTGE 87 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv--~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e--~~~~ 87 (220)
.+.|+|+ |.. ++ +.+.++++.|.+.|+.++ |=-.+ +..++..+-..+.....||.= +.+.+.. ....
T Consensus 8 ~~liaVl---r~~-~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG-TVl~~~~a~~a~~ 78 (204)
T TIGR01182 8 AKIVPVI---RID-DV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG-TVLNPEQLRQAVD 78 (204)
T ss_pred CCEEEEE---ecC-CH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE-eCCCHHHHHHHHH
Confidence 3467887 221 33 467889999999888875 33334 677766666656666778872 1111110 0111
Q ss_pred CCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHH
Q 027662 88 TVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITW 131 (220)
Q Consensus 88 ~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~ 131 (220)
--.+.++.+++.. ..+-...--.+..+| |.-|..|+..++.+
T Consensus 79 aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~~ 120 (204)
T TIGR01182 79 AGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALEL 120 (204)
T ss_pred cCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHHC
Confidence 1134555566532 222222223577788 77899999988753
No 167
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=35.93 E-value=37 Score=30.56 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHh
Q 027662 34 IELGKELVSRNIDLVYGGGSIGLMGLVSQAVHD 66 (220)
Q Consensus 34 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 66 (220)
+.|+|.|......||.+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 5688999999999998886 777777777665
No 168
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=35.66 E-value=1.1e+02 Score=28.02 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=36.4
Q ss_pred hhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----CcchHHHHHHHHH
Q 027662 107 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDKA 160 (220)
Q Consensus 107 ~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~~ 160 (220)
...|+|||.-| .-||+|-..++.+.. .-.+||||+-+.- --.|...++...+
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 56799999885 799999998887642 2237999997642 2456667766543
No 169
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=35.56 E-value=70 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cChHHHHHHHHHhcC
Q 027662 30 QDAAIELGKELVS----RNIDLV-Y--GGGS-IGLMGLVSQAVHDGG 68 (220)
Q Consensus 30 ~~~A~~lG~~LA~----~G~~lv-~--GGg~-~GlM~a~a~gA~~~G 68 (220)
.+.|..+|+.||+ .|+.=| + ||.. -|-+.|.|++|+++|
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 3678899999987 465433 2 3322 589999999999987
No 170
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=35.12 E-value=1.4e+02 Score=26.36 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=41.2
Q ss_pred HHHHhhCCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCH
Q 027662 103 AEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTV 180 (220)
Q Consensus 103 ~~m~~~sDa~Vvl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 180 (220)
..++..||++|.. ..|+|.. +.|++. .++||+.-+..|. ..++ .+| ....++-.+|+
T Consensus 267 ~~~~~~adi~v~pS~~Eg~~~~--~lEAma------~G~Pvv~s~~~g~-~e~i-------~~~-----~~g~~~~~~d~ 325 (374)
T TIGR03088 267 PALMQALDLFVLPSLAEGISNT--ILEAMA------SGLPVIATAVGGN-PELV-------QHG-----VTGALVPPGDA 325 (374)
T ss_pred HHHHHhcCEEEeccccccCchH--HHHHHH------cCCCEEEcCCCCc-HHHh-------cCC-----CceEEeCCCCH
Confidence 3457889987743 2444442 566664 4699998776442 2221 121 22344446789
Q ss_pred HHHHHHHHhhcC
Q 027662 181 KELVKKLEEYVP 192 (220)
Q Consensus 181 ee~~~~l~~~~~ 192 (220)
+++.+.|.+...
T Consensus 326 ~~la~~i~~l~~ 337 (374)
T TIGR03088 326 VALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHHh
Confidence 999888887653
No 171
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=34.93 E-value=1e+02 Score=29.16 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----CcchHHHHHHHH
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 159 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 159 (220)
.|+|||.-| .-||+|-..++.+.- ..+|||||.+.. -..|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999885 799999999887653 358999998643 244666676654
No 172
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=34.83 E-value=80 Score=23.50 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHC----CCeEE---EcCCC-cChHHHHHHHHHhcC
Q 027662 31 DAAIELGKELVSR----NIDLV---YGGGS-IGLMGLVSQAVHDGG 68 (220)
Q Consensus 31 ~~A~~lG~~LA~~----G~~lv---~GGg~-~GlM~a~a~gA~~~G 68 (220)
+.|+.+|+.||++ |+.-| -||-. .|-+.|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 6788889888873 33322 24333 488999999999976
No 173
>PRK06756 flavodoxin; Provisional
Probab=34.50 E-value=96 Score=24.12 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCeEEE
Q 027662 57 MGLVSQAVHDGGRHVIG 73 (220)
Q Consensus 57 M~a~a~gA~~~GG~viG 73 (220)
+....+-..+.|..+++
T Consensus 103 ~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 103 VDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHHHHCCCEEcC
Confidence 34444445556666655
No 174
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=34.37 E-value=87 Score=23.13 Aligned_cols=31 Identities=26% Similarity=0.141 Sum_probs=24.3
Q ss_pred HHHHHHHHhhCCeEEEecCC---CCcHHHHHHHH
Q 027662 99 HQRKAEMAKHSDAFIALPGG---YGTLEELLEVI 129 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG---~GTL~El~~~~ 129 (220)
..+...++..||+++.|||- -|..-|...+-
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~ 83 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAK 83 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHH
Confidence 34555577799999999983 69999998765
No 175
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.30 E-value=2.1e+02 Score=25.68 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=18.2
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRN 44 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G 44 (220)
.|++|+|+.- .. .+.-.+.++++.++|.++|
T Consensus 3 ~~~~v~iv~~--~~-k~~a~e~~~~i~~~L~~~g 33 (295)
T PRK01231 3 SFRNIGLIGR--LG-SSSVVETLRRLKDFLLDRG 33 (295)
T ss_pred CCCEEEEEec--CC-CHHHHHHHHHHHHHHHHCC
Confidence 4667898832 22 3445566677777665543
No 176
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.27 E-value=3.2e+02 Score=23.86 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCeEEEcCCCcChHHHHHHHHHhcCC-eEEEEeCCcccCCCCCCCCCceeee-cCCH-HHHHHHHHhhCC--eEEEe-cC
Q 027662 44 NIDLVYGGGSIGLMGLVSQAVHDGGR-HVIGVIPKTLMPRELTGETVGEVKA-VADM-HQRKAEMAKHSD--AFIAL-PG 117 (220)
Q Consensus 44 G~~lv~GGg~~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~~~-~~~m-~~Rk~~m~~~sD--a~Vvl-pG 117 (220)
+-.++|-|.+ -|-.-.. +...+- ..+=|+|........ +..+++. -..| .+-|..|++.-. ++|.= .|
T Consensus 131 ~~iflttGsk-~L~~f~~--~~~~~~r~~~RvLp~~~~~~g~---~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG 204 (249)
T PF02571_consen 131 GRIFLTTGSK-NLPPFVP--APLPGERLFARVLPTPESALGF---PPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESG 204 (249)
T ss_pred CCEEEeCchh-hHHHHhh--cccCCCEEEEEECCCccccCCC---ChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 4556666654 5544433 222232 335556654431111 1223332 3334 355666666544 33332 47
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHh
Q 027662 118 GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEE 189 (220)
Q Consensus 118 G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 189 (220)
+.|+.+-+..+.. .+.||+++..- .......+++|++|++++|++
T Consensus 205 ~~g~~eKi~AA~~------lgi~vivI~RP---------------------~~~~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 205 GSGFDEKIEAARE------LGIPVIVIKRP---------------------PEPYGDPVVETIEELLDWLEQ 249 (249)
T ss_pred chhhHHHHHHHHH------cCCeEEEEeCC---------------------CCCCCCcccCCHHHHHHHHhC
Confidence 7888777766553 25799888531 111123336889999988863
No 177
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.01 E-value=91 Score=28.17 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=33.9
Q ss_pred hhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC--Ccc-----hHHHHHHHHHHHcCC
Q 027662 107 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVEEGF 165 (220)
Q Consensus 107 ~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g~ 165 (220)
+.+|.+| .-||=||+-..+..+ ...++||+-+|.+ ||. +.+.+.++.+.+..|
T Consensus 67 ~~~Dlvi-~iGGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKFAI-VLGGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCEEE-EEeCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 3567554 457889987665432 2357899888865 565 556666666665544
No 178
>PRK13059 putative lipid kinase; Reviewed
Probab=33.98 E-value=1e+02 Score=27.10 Aligned_cols=33 Identities=30% Similarity=0.726 Sum_probs=22.8
Q ss_pred hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEE
Q 027662 108 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 144 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill 144 (220)
..| .|+.-||=||++|+...+. +.+ .+.|+.++
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgvi 88 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGIL 88 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEE
Confidence 345 6678899999999987662 211 24677776
No 179
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=33.98 E-value=2.1e+02 Score=25.28 Aligned_cols=40 Identities=30% Similarity=0.642 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHH-----HHHHHHHcC
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVEEG 164 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~-----~l~~~~~~g 164 (220)
|++.+++.+.-.+ ..++.|++++ +||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 5667776553222 2356798877 48887554 677776655
No 180
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=33.77 E-value=1.3e+02 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=28.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
+++|.++|-...+.+| .|+.+.+.+++.++.+-+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAG 37 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAG 37 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCc
Confidence 5789999887777665 77888888888888777665
No 181
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.73 E-value=2.3e+02 Score=24.97 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=34.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC---------eEEEcCCCcChHHHHHHHHHh--cCCeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNI---------DLVYGGGSIGLMGLVSQAVHD--GGRHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~---------~lv~GGg~~GlM~a~a~gA~~--~GG~viGi 74 (220)
|+|+|+ . + . ++...+.+.++-++|.+.|+ .++.| |. |-|=-+++.+.. .+-.++||
T Consensus 1 M~i~Ii-~-~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iG-GD-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 1 MKVAII-S-N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVG-GD-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred CEEEEE-e-C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEEC-Cc-HHHHHHHHHhcccCCCCeEEEE
Confidence 468999 3 3 2 56666788999998877664 34444 54 776555554443 34455665
No 182
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=33.72 E-value=90 Score=29.24 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHhcCC-eEEEEeCCcccCCCCCCCCCceee-------ecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHH
Q 027662 55 GLMGLVSQAVHDGGR-HVIGVIPKTLMPRELTGETVGEVK-------AVADMHQRKAEMAKHSDAFIALPGGYGTLEELL 126 (220)
Q Consensus 55 GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~~-------~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~ 126 (220)
|--..+.+.-.+.|- -+.||++......+.+..--.+.+ +.+...++..-+++.||++|..+-=+|+-.++-
T Consensus 277 ~~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~ 356 (402)
T PRK09536 277 QPAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVI 356 (402)
T ss_pred CcHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCch
Confidence 334455555555554 458887765433222111111111 233446888889999999999776666655554
Q ss_pred H
Q 027662 127 E 127 (220)
Q Consensus 127 ~ 127 (220)
.
T Consensus 357 ~ 357 (402)
T PRK09536 357 G 357 (402)
T ss_pred h
Confidence 3
No 183
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=33.69 E-value=1.5e+02 Score=25.24 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHHHHhhCCeEEEec--C--CC-CcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccE
Q 027662 100 QRKAEMAKHSDAFIALP--G--GY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQII 174 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvlp--G--G~-GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 174 (220)
+...-++..||++|.-. . |. ++ +.|++. .++||+..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a------~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIG------FGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHH------cCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 44556788899876432 1 32 34 344443 369999877644 22211 1122334
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 027662 175 VSAPTVKELVKKLEEYVP 192 (220)
Q Consensus 175 ~~~~~~ee~~~~l~~~~~ 192 (220)
+-.+|++++.+.|.+...
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 545678888888877654
No 184
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=33.57 E-value=1.6e+02 Score=26.25 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 100 QRKAEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
+....++..||++|.- ..|+|.. +.|++. .++||+..+..+ ...+ +.++ ....++-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG-LPVA-------VADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC-cHhh-------hccC-----CceEECCC
Confidence 4455678899988764 3456653 566664 369999887643 2221 1111 11122223
Q ss_pred CCHHHHHHHHHhhcC
Q 027662 178 PTVKELVKKLEEYVP 192 (220)
Q Consensus 178 ~~~ee~~~~l~~~~~ 192 (220)
+|++++.+.|.+...
T Consensus 353 ~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 353 HDPADWADALARLLD 367 (405)
T ss_pred CCHHHHHHHHHHHHh
Confidence 588888888776543
No 185
>PRK05569 flavodoxin; Provisional
Probab=33.54 E-value=57 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=16.3
Q ss_pred CCCcEEEEeCCCcc-hHHHHHHHHH-HHcCC
Q 027662 137 HDKPVGLLNVDGYY-NSLLSFIDKA-VEEGF 165 (220)
Q Consensus 137 ~~kPiill~~~g~w-~~l~~~l~~~-~~~g~ 165 (220)
.+||++++...|.. ......++.+ ...|+
T Consensus 82 ~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~ 112 (141)
T PRK05569 82 ENKKCILFGSYGWDNGEFMKLWKDRMKDYGF 112 (141)
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHHCCC
Confidence 57999999876644 2334434333 33444
No 186
>PRK08105 flavodoxin; Provisional
Probab=33.18 E-value=87 Score=24.89 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHC-------CCeEEEcCCC------cChHHHHHHHHHhcCCeEEEE
Q 027662 32 AAIELGKELVSR-------NIDLVYGGGS------IGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 32 ~A~~lG~~LA~~-------G~~lv~GGg~------~GlM~a~a~gA~~~GG~viGi 74 (220)
.+.++-..|.+. .+. |.|-|. .+.+..+.+-..+.|+..++-
T Consensus 67 ~~~~f~~~l~~~~~~l~~~~~a-vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 67 SIVPLFQALKDTAGYQPNLRYG-VIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred hHHHHHHHHHhcCcccCCCEEE-EEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 345555555442 344 557664 233344444444578777763
No 187
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=33.15 E-value=2e+02 Score=24.99 Aligned_cols=41 Identities=32% Similarity=0.359 Sum_probs=23.2
Q ss_pred HHhhCCeEEEecCCCCcHHHHH--HHHHHHH-hCCCCCcEEEEeCCCc
Q 027662 105 MAKHSDAFIALPGGYGTLEELL--EVITWAQ-LGIHDKPVGLLNVDGY 149 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~--~~~~~~q-lg~~~kPiill~~~g~ 149 (220)
++..+|++++ +.||+.+-. .+....+ ...+++|++ +++.+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 4678899888 555555432 2222212 234578965 577654
No 188
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=33.07 E-value=1e+02 Score=23.97 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH----CCCeEE---EcCC-CcChHHHHHHHHHhcC
Q 027662 31 DAAIELGKELVS----RNIDLV---YGGG-SIGLMGLVSQAVHDGG 68 (220)
Q Consensus 31 ~~A~~lG~~LA~----~G~~lv---~GGg-~~GlM~a~a~gA~~~G 68 (220)
+.|+.+|+.||+ .|+.=| -||. +.|-+.|++++|.++|
T Consensus 69 ~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~G 114 (117)
T PRK05593 69 EAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAG 114 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhC
Confidence 467888888887 354333 2331 2578999999999987
No 189
>PRK10494 hypothetical protein; Provisional
Probab=32.65 E-value=1.8e+02 Score=25.53 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=7.0
Q ss_pred CCeEEEecCCC
Q 027662 109 SDAFIALPGGY 119 (220)
Q Consensus 109 sDa~VvlpGG~ 119 (220)
+|++|||+||.
T Consensus 79 ~d~IVVLGgG~ 89 (259)
T PRK10494 79 VDYIVVLGGGY 89 (259)
T ss_pred CCEEEEcCCCc
Confidence 56666666664
No 190
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=32.42 E-value=62 Score=28.33 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGG 52 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 52 (220)
+|+|+||......+.-...++.+-+.|.+.||.++.-..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~ 39 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDI 39 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEee
Confidence 366666655443332246889999999999999865443
No 191
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.24 E-value=58 Score=27.86 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=23.6
Q ss_pred HHhhCCeEE--Eec-CCCCcHHHHH-HHHHHHHhCCCCCcEEEEeC
Q 027662 105 MAKHSDAFI--ALP-GGYGTLEELL-EVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 105 m~~~sDa~V--vlp-GG~GTL~El~-~~~~~~qlg~~~kPiill~~ 146 (220)
....+|.+| +|+ |-.|.+.|-+ .+. .++..+.+||+-++.
T Consensus 116 ~~~~~dvIVDalfG~G~~g~lrep~a~~I--e~iN~~~~pivAVDi 159 (203)
T COG0062 116 EPESADVIVDALFGTGLSGPLREPFASLI--EAINASGKPIVAVDI 159 (203)
T ss_pred ccccCCEEEEeceecCCCCCCccHHHHHH--HHHHhcCCceEEEeC
Confidence 345667665 233 5567666654 333 234467899998874
No 192
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.20 E-value=55 Score=29.73 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=19.1
Q ss_pred CCCeEEEcCCCcChHHHHHHHHHhcCCe
Q 027662 43 RNIDLVYGGGSIGLMGLVSQAVHDGGRH 70 (220)
Q Consensus 43 ~G~~lv~GGg~~GlM~a~a~gA~~~GG~ 70 (220)
.+..|+||||. |+=.+.+....+.|..
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~ 64 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAK 64 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCe
Confidence 46777777775 7777777777776664
No 193
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=32.19 E-value=3.2e+02 Score=23.34 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.1
Q ss_pred HHHHH-CCCeEEEcCCCcChHHHH
Q 027662 38 KELVS-RNIDLVYGGGSIGLMGLV 60 (220)
Q Consensus 38 ~~LA~-~G~~lv~GGg~~GlM~a~ 60 (220)
+.|++ +|-.+|+|-|+.|+++-.
T Consensus 33 ~~i~~~~gkv~V~G~GkSG~Igkk 56 (202)
T COG0794 33 ELILECKGKVFVTGVGKSGLIGKK 56 (202)
T ss_pred HHHHhcCCcEEEEcCChhHHHHHH
Confidence 33443 788999999999998544
No 194
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=31.98 E-value=1.8e+02 Score=24.97 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=40.5
Q ss_pred HHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 102 KAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 102 k~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
..-++..||++|.-. .|+| .=++|+++ .++|||.-+..|. ..+ +++ ....+...++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~--~~~lEAma------~G~PvI~s~~~~~-~~~---i~~----------~~~~~~~~~~ 317 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLP--LVLIEAQA------SGLPCILSDTITK-EVD---LTD----------LVKFLSLDES 317 (358)
T ss_pred HHHHHHhcCEEEecccccCCC--HHHHHHHH------hCCCEEEEcCCch-hhh---hcc----------CccEEeCCCC
Confidence 344678899876432 2233 23566665 4799998876543 211 111 1223444566
Q ss_pred HHHHHHHHHhhcCC
Q 027662 180 VKELVKKLEEYVPC 193 (220)
Q Consensus 180 ~ee~~~~l~~~~~~ 193 (220)
++++.+.|.+....
T Consensus 318 ~~~~a~~i~~l~~~ 331 (358)
T cd03812 318 PEIWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHHHhC
Confidence 79999998886543
No 195
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.94 E-value=1.2e+02 Score=25.47 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=4.1
Q ss_pred hcCCeEEEE
Q 027662 66 DGGRHVIGV 74 (220)
Q Consensus 66 ~~GG~viGi 74 (220)
+.|..++||
T Consensus 75 ~~~~PvlGi 83 (209)
T PRK13146 75 AAGRPFLGI 83 (209)
T ss_pred hCCCcEEEE
Confidence 344444444
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.73 E-value=91 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|+|+|+|.|..... .++.+-+.|.++|+.+.
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 57999977764322 34667777777888755
No 197
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=31.26 E-value=1.4e+02 Score=25.27 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=38.6
Q ss_pred HHHHHhhCCeEEEecCC---CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 102 KAEMAKHSDAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 102 k~~m~~~sDa~VvlpGG---~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
...++..||++|. |.. +|. =++|+++ .++||+..+..+.- +.+ .+.....++-.+
T Consensus 260 ~~~~~~~~d~~l~-~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~~~----~~i---------~~~~~g~~~~~~ 317 (364)
T cd03814 260 LAAAYASADVFVF-PSRTETFGL--VVLEAMA------SGLPVVAPDAGGPA----DIV---------TDGENGLLVEPG 317 (364)
T ss_pred HHHHHHhCCEEEE-CcccccCCc--HHHHHHH------cCCCEEEcCCCCch----hhh---------cCCcceEEcCCC
Confidence 3456788998664 432 232 2556554 47999987654321 111 111233445566
Q ss_pred CHHHHHHHHHhhcC
Q 027662 179 TVKELVKKLEEYVP 192 (220)
Q Consensus 179 ~~ee~~~~l~~~~~ 192 (220)
|.+++.+.|.+...
T Consensus 318 ~~~~l~~~i~~l~~ 331 (364)
T cd03814 318 DAEAFAAALAALLA 331 (364)
T ss_pred CHHHHHHHHHHHHc
Confidence 77778877776543
No 198
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=31.08 E-value=1.1e+02 Score=26.01 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhC-------CCCCcEEEEeCCCcch--HHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYN--SLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg-------~~~kPiill~~~g~w~--~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
.|+.|++|=...||..+..=++-.-+. +.++|++|+-.+-=+. .|.++++-....+.|-+.......--.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 578999999999999987544432221 3578998886553332 2333333223345566666677777889
Q ss_pred HHHHHHHHHh
Q 027662 180 VKELVKKLEE 189 (220)
Q Consensus 180 ~ee~~~~l~~ 189 (220)
.||+++++-.
T Consensus 161 ieDlvd~~v~ 170 (191)
T COG0163 161 IEDLVDFVVG 170 (191)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 199
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=31.01 E-value=70 Score=26.14 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=22.1
Q ss_pred hhCCeEEEecCC-----CCcHHHHHHHHHHHHh-CCCCCcEEEEeCC
Q 027662 107 KHSDAFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVGLLNVD 147 (220)
Q Consensus 107 ~~sDa~VvlpGG-----~GTL~El~~~~~~~ql-g~~~kPiill~~~ 147 (220)
..+|.+|+.+|| ..+.......+.+... ...++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 567778877775 2222222111222222 2468999998754
No 200
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=30.95 E-value=2.3e+02 Score=23.48 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=53.1
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHH------HHHhCCCCCcEEEEeC--CCcchH-H-HHHHHHHHHcCCC--Cccccc
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVIT------WAQLGIHDKPVGLLNV--DGYYNS-L-LSFIDKAVEEGFI--SPSARQ 172 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~------~~qlg~~~kPiill~~--~g~w~~-l-~~~l~~~~~~g~i--~~~~~~ 172 (220)
+...+|++|+.|--.+|+.-+..=++ ....-+.++|+++.-. ...|.. . .+-++.+.+.|+. ++.. .
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~-g 152 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE-G 152 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC-C
Confidence 44678999999999999887753211 1111124789998732 246653 2 3345556666542 2221 1
Q ss_pred c-------EEEcCCHHHHHHHHHhhcCC
Q 027662 173 I-------IVSAPTVKELVKKLEEYVPC 193 (220)
Q Consensus 173 ~-------i~~~~~~ee~~~~l~~~~~~ 193 (220)
. .---.+++|+++++.++...
T Consensus 153 ~la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 153 LLACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred ccccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 1 34467899999999887643
No 201
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=30.89 E-value=1.2e+02 Score=26.17 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 99 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
..+....++.||.+|+++=. + ++.-+..+.+.-..+.|++++|.+.- .+ +.....-+++..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS-l---~V~pa~~l~~~~~~~~~~v~iN~~~~--------------~~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS-L---KVAPFASLPSRVPSEVPRVLINREPV--------------GH-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC-C---eeccHHHHHHHHhCCCcEEEEeCCCC--------------CC-CCCCCcCEEEeC
Confidence 35555667889988886433 2 22212222211124689999996411 00 000112367777
Q ss_pred CHHHHHHHH
Q 027662 179 TVKELVKKL 187 (220)
Q Consensus 179 ~~ee~~~~l 187 (220)
+.+|+++.|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888887654
No 202
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.45 E-value=2.9e+02 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=20.3
Q ss_pred cccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 027662 10 SKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNI 45 (220)
Q Consensus 10 ~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~ 45 (220)
.++++|+|+.- .. .+...+.++++.++|.++|+
T Consensus 3 ~~~~~I~iv~~--~~-~~~~~~~~~~l~~~L~~~g~ 35 (306)
T PRK03372 3 TASRRVLLVAH--TG-RDEATEAARRVAKQLGDAGI 35 (306)
T ss_pred CCccEEEEEec--CC-CHHHHHHHHHHHHHHHHCCC
Confidence 35667999832 22 34555677778777765543
No 203
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.40 E-value=1.3e+02 Score=26.90 Aligned_cols=52 Identities=27% Similarity=0.273 Sum_probs=31.9
Q ss_pred hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC--Ccc-----hHHHHHHHHHHHcCC
Q 027662 108 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVEEGF 165 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g~ 165 (220)
.+|.+ +.-||=||+--.+.. +...++||+-+|.+ ||. +.+.+.++.+.+..|
T Consensus 64 ~~Dlv-i~iGGDGT~L~aa~~-----~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 64 ISDFL-ISLGGDGTLISLCRK-----AAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred CCCEE-EEECCCHHHHHHHHH-----hcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC
Confidence 46754 455889997655432 23357899888865 566 455556666554443
No 204
>CHL00175 minD septum-site determining protein; Validated
Probab=30.29 E-value=1.1e+02 Score=26.42 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=26.3
Q ss_pred hhhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 6 EVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 6 ~~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|-.++..+.|+|. +...+..... .|..|+..||+.|..++
T Consensus 9 ~~~~~~~~vi~v~-s~KGGvGKTt--~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 9 EKSATMSRIIVIT-SGKGGVGKTT--TTANLGMSIARLGYRVA 48 (281)
T ss_pred hhcCCCceEEEEE-cCCCCCcHHH--HHHHHHHHHHhCCCeEE
Confidence 3344455667777 5455555443 67889999999997554
No 205
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.00 E-value=1.1e+02 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|+.|+|+ +..-+.... -.|..|+..||+.|..++
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcEE
Confidence 4578887 444454443 367889999999998654
No 206
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=29.93 E-value=95 Score=27.59 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=77.0
Q ss_pred hhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcC-----CeEEEEeCCcccCC
Q 027662 8 QLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGG-----RHVIGVIPKTLMPR 82 (220)
Q Consensus 8 ~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~G-----G~viGi~P~~~~~~ 82 (220)
..-+++-|++++|-.... .+.+...++.+.|-++++.|++.|+ +.+ ...+.| |...|+ |..+ +.
T Consensus 90 v~G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC--~a~-----~l~k~gl~~~~g~~~gi-P~vl-~~ 158 (258)
T cd00587 90 VDGTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC--AAE-----ALLKLGLEDGAGILGGL-PIVF-DM 158 (258)
T ss_pred HcCCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch--HHH-----HHHhcCCccccccccCC-Ccee-ec
Confidence 344677888887765432 3445568899999999998888765 333 223344 555554 4332 11
Q ss_pred CCCCCCCceeeecCCHHHHHHHHHh---hCC--eEEEecCCCCcHHHHHHH--HHHHHhCCCCCcEEEEeCC--Ccch-H
Q 027662 83 ELTGETVGEVKAVADMHQRKAEMAK---HSD--AFIALPGGYGTLEELLEV--ITWAQLGIHDKPVGLLNVD--GYYN-S 152 (220)
Q Consensus 83 e~~~~~~~~~~~~~~m~~Rk~~m~~---~sD--a~VvlpGG~GTL~El~~~--~~~~qlg~~~kPiill~~~--g~w~-~ 152 (220)
. .+++....-.+..|-...+. ..| ++++.|+ -++|=.-+ +.+..+| .|+++ ++. .|=+ .
T Consensus 159 G----sCvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~lG---Ipv~~-Gp~~P~~~s~~ 227 (258)
T cd00587 159 G----NCVDNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFLG---VPVHV-GPPLPVDGSIP 227 (258)
T ss_pred c----cchhHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHcC---Cceee-CCCCccccChh
Confidence 1 33333333344455444433 233 5666665 34444333 2333344 35554 211 1212 2
Q ss_pred HHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHH
Q 027662 153 LLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKL 187 (220)
Q Consensus 153 l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 187 (220)
+.+++.. +. ..-....+++..||+++.+.+
T Consensus 228 v~~~L~~----~~-~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 228 VWKVLTP----EA-SDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred HHHHHHh----cc-hhccCcEEEecCCHHHHHHHh
Confidence 2233321 11 112234577788988887754
No 207
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=29.92 E-value=1.2e+02 Score=25.99 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=41.5
Q ss_pred HHHHHhhCCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 102 KAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 102 k~~m~~~sDa~Vvlp---GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
...++..||++|.-. .|+|+ =++|+++ .++|+|..+..+. ..+.. ++ ....++-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~~-~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGGA-RETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCCc-HHHHh-------CC-----CceEEeCCC
Confidence 445677899877543 34553 3566664 4699998876433 33221 11 123455568
Q ss_pred CHHHHHHHHHhhc
Q 027662 179 TVKELVKKLEEYV 191 (220)
Q Consensus 179 ~~ee~~~~l~~~~ 191 (220)
|++++.+.|....
T Consensus 316 ~~~~l~~~i~~~~ 328 (355)
T cd03819 316 DAEALAQALDQIL 328 (355)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998886443
No 208
>PRK09004 FMN-binding protein MioC; Provisional
Probab=29.72 E-value=1.1e+02 Score=24.10 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=4.8
Q ss_pred HhcCCeEEE
Q 027662 65 HDGGRHVIG 73 (220)
Q Consensus 65 ~~~GG~viG 73 (220)
.+.|+..++
T Consensus 110 ~~lGa~~v~ 118 (146)
T PRK09004 110 KAKGAKQIG 118 (146)
T ss_pred HHcCCeEee
Confidence 345665554
No 209
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=29.55 E-value=2.2e+02 Score=24.67 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=40.1
Q ss_pred HHHHHhhCCeEEEecC---------CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccc
Q 027662 102 KAEMAKHSDAFIALPG---------GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQ 172 (220)
Q Consensus 102 k~~m~~~sDa~VvlpG---------G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~ 172 (220)
...++..||++|. |. |+|+ =++|+++ .++||+.-+..+.- ++ +......
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~a------~G~PvI~s~~~~~~----e~---------i~~~~~g 315 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQA------SGVPVVATRHGGIP----EA---------VEDGETG 315 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHHH------cCCCEEEeCCCCch----hh---------eecCCee
Confidence 3446788998765 33 2232 3566664 46999987764421 11 1111223
Q ss_pred cEEEcCCHHHHHHHHHhhcC
Q 027662 173 IIVSAPTVKELVKKLEEYVP 192 (220)
Q Consensus 173 ~i~~~~~~ee~~~~l~~~~~ 192 (220)
.++-.+|++++.+.|.+...
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 34445689999888887654
No 210
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.52 E-value=3.2e+02 Score=23.17 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=60.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE--EcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCC--CCCC
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV--YGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRE--LTGE 87 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv--~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e--~~~~ 87 (220)
.+.|+|+ | ..++ +.+.++.+.|.+.|+.++ |=-.+ +..+++.+-..+.....||.= +.+.+.. ....
T Consensus 4 ~~vv~Vi---r-~~~~---~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAG-TVl~~e~a~~ai~ 74 (201)
T PRK06015 4 QPVIPVL---L-IDDV---EHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAG-TILNAKQFEDAAK 74 (201)
T ss_pred CCEEEEE---E-cCCH---HHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeE-eCcCHHHHHHHHH
Confidence 3467777 2 1122 467888999999888875 33344 777777666656666778872 1111110 0111
Q ss_pred CCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHH
Q 027662 88 TVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVIT 130 (220)
Q Consensus 88 ~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~ 130 (220)
--.+.++.+++...-..... ...+..+|| .-|..|+..++.
T Consensus 75 aGA~FivSP~~~~~vi~~a~-~~~i~~iPG-~~TptEi~~A~~ 115 (201)
T PRK06015 75 AGSRFIVSPGTTQELLAAAN-DSDVPLLPG-AATPSEVMALRE 115 (201)
T ss_pred cCCCEEECCCCCHHHHHHHH-HcCCCEeCC-CCCHHHHHHHHH
Confidence 11344555555322222222 334677776 458888888874
No 211
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=29.27 E-value=4.7e+02 Score=24.31 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=60.9
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHH---HHHHCCCeEEEcCCCcC--------------hHHHHHHHHHhcCCeEEEEeC
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGK---ELVSRNIDLVYGGGSIG--------------LMGLVSQAVHDGGRHVIGVIP 76 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~---~LA~~G~~lv~GGg~~G--------------lM~a~a~gA~~~GG~viGi~P 76 (220)
.+.||-||... . +.-++|++ .--+.|..+|---.+-| +..-+++-|.+.|...|=+-+
T Consensus 164 ~~tvy~Gs~~E--~---~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 164 GATIYFGSEES--R---RQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred EEEEecCCHHH--H---HHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecC
Confidence 35666665322 2 33344554 44457888874212211 566678888899999888853
Q ss_pred Ccc-cCCCC-----CCCCCceeeecCCHHHHHHHHHhhC---CeEEEecCCCC-cHHHHHHH
Q 027662 77 KTL-MPREL-----TGETVGEVKAVADMHQRKAEMAKHS---DAFIALPGGYG-TLEELLEV 128 (220)
Q Consensus 77 ~~~-~~~e~-----~~~~~~~~~~~~~m~~Rk~~m~~~s---Da~VvlpGG~G-TL~El~~~ 128 (220)
... ...+. ......+.+..++..+|-+..++.| ..-|++-||.= +.+|+++.
T Consensus 239 p~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 239 PTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred CCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence 311 10000 0111223344567788888889887 56666666643 55566543
No 212
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.21 E-value=2.9e+02 Score=21.80 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 34 IELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 34 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+-.+||+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45667777899999998753 55799999999999999999
No 213
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=29.11 E-value=1.3e+02 Score=21.26 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=22.8
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 027662 110 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 148 (220)
Q Consensus 110 Da~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 148 (220)
=-+|.|| +|++|+..+.. .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3578888 69999998764 567763 555565543
No 214
>PRK13059 putative lipid kinase; Reviewed
Probab=28.97 E-value=1.3e+02 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=25.9
Q ss_pred HHHHCCC-eEEEcCCCcChHHHHHHHHHhcC-CeEEEEeCC
Q 027662 39 ELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG-RHVIGVIPK 77 (220)
Q Consensus 39 ~LA~~G~-~lv~GGg~~GlM~a~a~gA~~~G-G~viGi~P~ 77 (220)
..++.++ .||..|| .|--..++.+..+.+ ...+||+|.
T Consensus 51 ~~~~~~~d~vi~~GG-DGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 51 KDIDESYKYILIAGG-DGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHhhcCCCEEEEECC-ccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3334443 4555666 599888888888765 456999994
No 215
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=28.94 E-value=51 Score=31.16 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cChHHHHHHHHHhcCCeE
Q 027662 31 DAAIELGKELVSRNIDLVYGGGS----------IGLMGLVSQAVHDGGRHV 71 (220)
Q Consensus 31 ~~A~~lG~~LA~~G~~lv~GGg~----------~GlM~a~a~gA~~~GG~v 71 (220)
+.|+.|++.|.++|+.||+||-. .|+-+..+..+++.-|.+
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It 341 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGIT 341 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEe
Confidence 45777888888899999997632 266677777777755443
No 216
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=28.89 E-value=1.2e+02 Score=26.51 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=39.4
Q ss_pred HHHHHhhCCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 102 KAEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 102 k~~m~~~sDa~Vvl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
...++..||++|.- ..|.|.- ++|++. .++||+..+..+ . .++ +.+ .....++-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~-~---~e~----i~~-----~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG-P---RDI----VVD-----GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC-H---HHH----ccC-----CCCeEEeCCCC
Confidence 34467789987643 2444532 566664 469998876543 2 222 111 12223333457
Q ss_pred HHHHHHHHHhhcC
Q 027662 180 VKELVKKLEEYVP 192 (220)
Q Consensus 180 ~ee~~~~l~~~~~ 192 (220)
++++.+.|.+...
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888877653
No 217
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.87 E-value=1.3e+02 Score=22.56 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=6.4
Q ss_pred HHHHHhcCCeEEE
Q 027662 61 SQAVHDGGRHVIG 73 (220)
Q Consensus 61 a~gA~~~GG~viG 73 (220)
.+-..+.|..+++
T Consensus 103 ~~~l~~~g~~~v~ 115 (140)
T TIGR01753 103 EERLKEAGATIIA 115 (140)
T ss_pred HHHHHHCCCEEec
Confidence 3333345666554
No 218
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=28.85 E-value=83 Score=25.13 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 027662 99 HQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS 176 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 176 (220)
......++..||++++-+-- -||++++.... .+.+++++++++.-+-+- -+.+.|+ .... =..
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~~~P~-----~l~~~Gv---~~v~-g~~ 117 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAPLHPE-----ALFDYGV---TYVG-GSR 117 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGGS-GG-----GGCCTT----SEEE-EEE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCchhhHH-----HHHhCCC---CEEE-EEE
Confidence 45567789999977665443 49999997643 246899999877433220 1111221 0111 134
Q ss_pred cCCHHHHHHHHHh
Q 027662 177 APTVKELVKKLEE 189 (220)
Q Consensus 177 ~~~~ee~~~~l~~ 189 (220)
+.|++.+++.+++
T Consensus 118 v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 118 VVDPEKVLRAISE 130 (147)
T ss_dssp ES-HHHHHHHHCT
T ss_pred EeCHHHHHHHHHc
Confidence 7899999998865
No 219
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=28.73 E-value=68 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCeEEEec--C---CCCcHHHHHHHHHHHHhCCCCCcEEEE
Q 027662 100 QRKAEMAKHSDAFIALP--G---GYGTLEELLEVITWAQLGIHDKPVGLL 144 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvlp--G---G~GTL~El~~~~~~~qlg~~~kPiill 144 (220)
.=...+++.||++|++. | ..|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 33455788999999985 4 3699999987765 46898864
No 220
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=28.70 E-value=4.6e+02 Score=24.06 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=41.9
Q ss_pred hhCCeEEEecC--CCCcHHHHHHHHHHHH-hCCCCCcEEEEeCCCcchHHHHHH-HHHHHcCCCCccccccEEEcCCHHH
Q 027662 107 KHSDAFIALPG--GYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYYNSLLSFI-DKAVEEGFISPSARQIIVSAPTVKE 182 (220)
Q Consensus 107 ~~sDa~VvlpG--G~GTL~El~~~~~~~q-lg~~~kPiill~~~g~w~~l~~~l-~~~~~~g~i~~~~~~~i~~~~~~ee 182 (220)
..||++|+-.- +.|-+.++...+.... +...+|++.+++.-|+.....+.+ +.+...|+---...-.+....+.++
T Consensus 299 ~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~ 378 (394)
T PRK11921 299 FKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEA 378 (394)
T ss_pred HhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHH
Confidence 35888776532 2344556555554332 234689999998766654444444 3444455432222223444444333
Q ss_pred HHHHHHh
Q 027662 183 LVKKLEE 189 (220)
Q Consensus 183 ~~~~l~~ 189 (220)
++.+++
T Consensus 379 -~~~~~~ 384 (394)
T PRK11921 379 -LDRCRS 384 (394)
T ss_pred -HHHHHH
Confidence 333433
No 221
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.61 E-value=2.8e+02 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=14.5
Q ss_pred EEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 47 LVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 47 lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
+|.-||. |-|=.+++ ....+-.++||
T Consensus 61 vi~iGGD-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 61 IIAIGGD-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred EEEEeCc-HHHHHHHH-hcCCCCeEEEE
Confidence 3444554 87765555 55545455665
No 222
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=28.49 E-value=1.5e+02 Score=27.94 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=38.0
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHH
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEE 124 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~E 124 (220)
.+|.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ .+.++. . .+..+|.+|...|..+.+++
T Consensus 198 VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 198 VVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 446777765543 556677778888887322111000001111 112332 2 35789999999887777764
No 223
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=28.49 E-value=88 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=24.4
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVS 42 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~ 42 (220)
+.++|+|||||=+....-+...|+++.+.+.-
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 44579999999887777777788877777653
No 224
>PRK09330 cell division protein FtsZ; Validated
Probab=28.33 E-value=2.9e+02 Score=25.88 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEec
Q 027662 55 GLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALP 116 (220)
Q Consensus 55 GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~Vvlp 116 (220)
|.=-.+++-|++.|-.+++|.|..+. .| .. . ....=..--..|.+.+|.+|++|
T Consensus 114 GaapvIA~iake~g~ltvaVvt~PF~-fE--G~--~---r~~nA~~gL~~L~~~~D~vIvi~ 167 (384)
T PRK09330 114 GAAPVVAEIAKELGILTVAVVTKPFS-FE--GK--K---RMKQAEEGIEELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCcc-cc--ch--h---HHHHHHHHHHHHHHHCCEEEEEe
Confidence 44446788999999999999864221 11 00 0 00011223344667888888886
No 225
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=28.19 E-value=3.9e+02 Score=24.22 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCeEEEecCC---CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcc
Q 027662 100 QRKAEMAKHSDAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 150 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpGG---~GTL~El~~~~~~~qlg~~~kPiill~~~g~w 150 (220)
++-..++..=+|+|+=||= -+++-++..++.+.. ..++|+++ +.+|.|
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~ 143 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLW 143 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceE
Confidence 3444477778888776652 345666666654432 24688876 778888
No 226
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.07 E-value=1.7e+02 Score=27.25 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=11.2
Q ss_pred hhCCeEEEecCCC
Q 027662 107 KHSDAFIALPGGY 119 (220)
Q Consensus 107 ~~sDa~VvlpGG~ 119 (220)
..+|++|+++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4789999999994
No 227
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=28.02 E-value=64 Score=27.55 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCCC-ChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 12 FKRICVFCGSSQGK-KSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 12 ~~~I~V~ggS~~~~-~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
|++|+|+.+|...- .-+.. .+..--..|.+.|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~~-E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIH-EAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehh-HHHHHHHHHHHCCCEEEEEe
Confidence 35788886542221 11221 22344567778899877643
No 228
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=27.99 E-value=1e+02 Score=30.46 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC-HHHHH--HHHHhhcCCcccccccccccccc--cccc
Q 027662 137 HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT-VKELV--KKLEEYVPCHERVASKLNWEMEQ--LGYT 211 (220)
Q Consensus 137 ~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~-~ee~~--~~l~~~~~~~~~~~~~~~w~~~~--~~~~ 211 (220)
..+|+|++..+---.|++.|++.....+. ....-+++-+.+ .+|.+ +.++++.....-..-...|+++| ..|-
T Consensus 452 ~~~piImIg~GTGIAPfrsflq~r~~~~~--~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YV 529 (600)
T PRK10953 452 PETPVIMIGPGTGIAPFRAFMQQRAADGA--PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYV 529 (600)
T ss_pred CCCCEEEEecCcCcHHHHHHHHHHHHcCC--CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcH
Q ss_pred cc
Q 027662 212 QD 213 (220)
Q Consensus 212 ~~ 213 (220)
||
T Consensus 530 Q~ 531 (600)
T PRK10953 530 QD 531 (600)
T ss_pred HH
No 229
>PLN02591 tryptophan synthase
Probab=27.95 E-value=1.5e+02 Score=25.96 Aligned_cols=41 Identities=27% Similarity=0.511 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHH-----HHHHHHHHcCC
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL-----SFIDKAVEEGF 165 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~-----~~l~~~~~~g~ 165 (220)
|++.+++.+.-.+ ...+.|++++ +||+++. +|++.+.+.|.
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcCC
Confidence 6677777663222 2256798877 3777654 47777777664
No 230
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=27.80 E-value=2.1e+02 Score=23.80 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=43.4
Q ss_pred HHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcc-----cCCCCCCCCCcee----eecCCHHHHHHHHHh
Q 027662 37 GKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTL-----MPRELTGETVGEV----KAVADMHQRKAEMAK 107 (220)
Q Consensus 37 G~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~-----~~~e~~~~~~~~~----~~~~~m~~Rk~~m~~ 107 (220)
-+.+...+..|-|||| =+|-.-++.++...|.||=.--+.. ...+...|.+.+- .+..-|.+|+.+.-+
T Consensus 66 ~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e 143 (172)
T COG0703 66 KELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE 143 (172)
T ss_pred HHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH
Confidence 3333444566667766 5788888999998887776621111 1111111222111 123445788887776
Q ss_pred hCCeEEEecCCC
Q 027662 108 HSDAFIALPGGY 119 (220)
Q Consensus 108 ~sDa~VvlpGG~ 119 (220)
.||.++--....
T Consensus 144 ~a~~~~~~~~~~ 155 (172)
T COG0703 144 VADFIIDTDDRS 155 (172)
T ss_pred hCcEEecCCCCc
Confidence 666555444443
No 231
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=27.77 E-value=5.6e+02 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=13.4
Q ss_pred HHHhhCCeEEEecCCCC
Q 027662 104 EMAKHSDAFIALPGGYG 120 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~G 120 (220)
..++.||.+|+++....
T Consensus 261 ~~~~~aDlvl~lG~~~~ 277 (574)
T PRK09124 261 HAMMNCDTLLMLGTDFP 277 (574)
T ss_pred HHHHhCCEEEEECCCCC
Confidence 45679999999997654
No 232
>PRK07308 flavodoxin; Validated
Probab=27.74 E-value=1.1e+02 Score=23.64 Aligned_cols=17 Identities=6% Similarity=-0.158 Sum_probs=8.2
Q ss_pred HHHHHHHHHhcCCeEEE
Q 027662 57 MGLVSQAVHDGGRHVIG 73 (220)
Q Consensus 57 M~a~a~gA~~~GG~viG 73 (220)
+..+.+-..+.|..+++
T Consensus 102 ~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 102 VDDFEAQFALTGATKGA 118 (146)
T ss_pred HHHHHHHHHHcCCeEcc
Confidence 44444434446666544
No 233
>PLN02271 serine hydroxymethyltransferase
Probab=27.63 E-value=59 Score=32.26 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCCC----------cChHHHHHHHHHhcCCe
Q 027662 32 AAIELGKELVSRNIDLVYGGGS----------IGLMGLVSQAVHDGGRH 70 (220)
Q Consensus 32 ~A~~lG~~LA~~G~~lv~GGg~----------~GlM~a~a~gA~~~GG~ 70 (220)
.|+.|++.|.++|+.||+||-. .|+.+..+..+++.-|.
T Consensus 443 NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 443 NAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred HHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCe
Confidence 4667788888899999997632 25556666666665443
No 234
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=27.52 E-value=1.5e+02 Score=24.77 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHhhCCeEEEecCCC-CcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHH
Q 027662 104 EMAKHSDAFIALPGGY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKE 182 (220)
Q Consensus 104 ~m~~~sDa~VvlpGG~-GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 182 (220)
-++..||++|. |... |.-.=+.|++. .++|++.-+..+. . ++++. ...++-.+|+++
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a------~g~PvI~~~~~~~-~---e~~~~-----------~g~~~~~~~~~~ 321 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMA------CGLPVVATDVGDN-A---ELVGD-----------TGFLVPPGDPEA 321 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHh------cCCCEEEcCCCCh-H---HHhhc-----------CCEEeCCCCHHH
Confidence 46788997664 4332 11112445553 3699998765432 2 22211 223445578888
Q ss_pred HHHHHHhhcC
Q 027662 183 LVKKLEEYVP 192 (220)
Q Consensus 183 ~~~~l~~~~~ 192 (220)
+.+.|.+...
T Consensus 322 l~~~i~~l~~ 331 (365)
T cd03807 322 LAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHh
Confidence 8888877553
No 235
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=27.42 E-value=2.9e+02 Score=26.76 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=47.8
Q ss_pred EEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHH-HH
Q 027662 47 LVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLE-EL 125 (220)
Q Consensus 47 lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~-El 125 (220)
+|.|.|+ +=..+++-++..|-+|+.+-+......+.....+ ...++. -+++.||.||..+|..+.++ |.
T Consensus 258 gVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 4567664 3345677777788887776222110000000111 112332 24678999999988777765 55
Q ss_pred HHHHHHHHhCCCCCcEEEEeCCCcchH
Q 027662 126 LEVITWAQLGIHDKPVGLLNVDGYYNS 152 (220)
Q Consensus 126 ~~~~~~~qlg~~~kPiill~~~g~w~~ 152 (220)
+..+ ++-.+|.|.+.+...
T Consensus 328 ~~~M--------KpGAiLINvGr~d~E 346 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFDNE 346 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCchH
Confidence 4433 234677888656433
No 236
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=27.32 E-value=1.8e+02 Score=25.22 Aligned_cols=71 Identities=6% Similarity=0.028 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCcEEEEeCCC-cchHHHHHHHHHHHcCCCCccccccEEE
Q 027662 99 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDG-YYNSLLSFIDKAVEEGFISPSARQIIVS 176 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~ql-g~~~kPiill~~~g-~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 176 (220)
.+|....+..||.+|+++ |=-++.-+..+... ..++.|++++|.+. .++. ..-+++
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 456666778999888864 32222222222221 23578999999741 1111 123677
Q ss_pred cCCHHHHHHHHHhhc
Q 027662 177 APTVKELVKKLEEYV 191 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~ 191 (220)
..+..|+++.|.++.
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 889999999887743
No 237
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=27.28 E-value=1.1e+02 Score=27.75 Aligned_cols=29 Identities=34% Similarity=0.387 Sum_probs=20.0
Q ss_pred CCeEEEcCCCcChHHHHHHHHHhcCC-eEEEE
Q 027662 44 NIDLVYGGGSIGLMGLVSQAVHDGGR-HVIGV 74 (220)
Q Consensus 44 G~~lv~GGg~~GlM~a~a~gA~~~GG-~viGi 74 (220)
+..+|.|.|+.|+|. ...|+..|. ++|.+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV 199 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe
Confidence 468899999999997 344555554 44544
No 238
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=27.14 E-value=68 Score=29.22 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=32.1
Q ss_pred CcchHHHHHHHHHHHcCCCCccccccE---EEcCCHHHHHHHHHh
Q 027662 148 GYYNSLLSFIDKAVEEGFISPSARQII---VSAPTVKELVKKLEE 189 (220)
Q Consensus 148 g~w~~l~~~l~~~~~~g~i~~~~~~~i---~~~~~~ee~~~~l~~ 189 (220)
.+|+-+..-+..|+.+|.|+++..+.+ ++..+++|+.+.+++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 478888888889999999999988753 678899999998876
No 239
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=27.05 E-value=4.7e+02 Score=23.55 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=59.0
Q ss_pred HHHhhCCeEEEe--------cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC---CcchHHHHHHHHHHHcCCCCcccc-
Q 027662 104 EMAKHSDAFIAL--------PGGYGTLEELLEVITWAQLGIHDKPVGLLNVD---GYYNSLLSFIDKAVEEGFISPSAR- 171 (220)
Q Consensus 104 ~m~~~sDa~Vvl--------pGG~GTL~El~~~~~~~qlg~~~kPiill~~~---g~w~~l~~~l~~~~~~g~i~~~~~- 171 (220)
.+++.+..+|++ |+.+||.+++-.... ..+....+.+-|... +-=+...+|++.+....-..+...
T Consensus 113 ~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~--~~~~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~~~~~ 190 (352)
T PF09848_consen 113 EIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAE--NLGIEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISPKPFN 190 (352)
T ss_pred HHHhcCCEEEEEEccccEeecccCCCHHHHHHHHH--hcCCccccCcCcCcceecCCCHHHHHHHHHHHhccccCccccc
Confidence 355668877765 667888887665442 222211222112110 123567889988876655544332
Q ss_pred ---c-cEEEcCCHHHHHHHHHhhcCCc--cccccccccccc
Q 027662 172 ---Q-IIVSAPTVKELVKKLEEYVPCH--ERVASKLNWEME 206 (220)
Q Consensus 172 ---~-~i~~~~~~ee~~~~l~~~~~~~--~~~~~~~~w~~~ 206 (220)
+ .+.+++|++++.++|++..... .+...++.|...
T Consensus 191 ~~~~yd~~~f~~~~~~~~~i~~k~~~~~~~rlvA~~~w~~~ 231 (352)
T PF09848_consen 191 PDENYDFRVFDSPEEMKEAIKEKNKEGGLSRLVAGYCWPWK 231 (352)
T ss_pred cCCceeEEEECCHHHHHHHHHHHhcccCCceEEEecccccc
Confidence 2 3899999999999998754322 334455566543
No 240
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=27.04 E-value=62 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=31.5
Q ss_pred hhCCeEEEecCCCCcHHHHHHHHHHHHhC----------CCCCcEEEEeCCCcchHHHHHHHHH
Q 027662 107 KHSDAFIALPGGYGTLEELLEVITWAQLG----------IHDKPVGLLNVDGYYNSLLSFIDKA 160 (220)
Q Consensus 107 ~~sDa~VvlpGG~GTL~El~~~~~~~qlg----------~~~kPiill~~~g~w~~l~~~l~~~ 160 (220)
+.+..+|=+-.|.---.-+..++-++..+ +..+|+|==|. |||+.++++=.++
T Consensus 93 ~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQL 155 (198)
T ss_pred cCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHh
Confidence 34455666666665444455544433222 13579986554 8999999864444
No 241
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=26.82 E-value=1e+02 Score=28.55 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=40.6
Q ss_pred ccchhhhcccceEEEEcCCCCCCChHHH---HHHHHHHHHHHH--CCCe--EEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 3 VQSEVQLSKFKRICVFCGSSQGKKSSYQ---DAAIELGKELVS--RNID--LVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 3 ~~~~~~~~~~~~I~V~ggS~~~~~~~~~---~~A~~lG~~LA~--~G~~--lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
.|+|+...+..-++|+.=|.+. ++|. +.+++.-+.|-+ .++. ++.||| .|.|+++..--+..|.++..+
T Consensus 23 ~~~~~~~~~~~g~si~eisHRs--~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~Ggg-T~~~ea~~~Nll~~g~~~~~~ 98 (364)
T PRK12462 23 VRQAVVELPETGLSVLGMSHRS--SWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGS-SLQFSMIPMNFSRPGAAAPEY 98 (364)
T ss_pred HHHHHhcccccCcccccccccc--HHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccH-HHHHHHHHHHcCCCCCcEEEE
Confidence 3555555555455666545553 4443 444444555544 2343 456777 599999998888777656533
No 242
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=26.60 E-value=2.4e+02 Score=24.70 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=39.9
Q ss_pred HHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHH
Q 027662 105 MAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKE 182 (220)
Q Consensus 105 m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 182 (220)
++..||++|... .|+|. =+.|+++ +++|||..+.+..-.. + +.+.....++-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~-------~-----v~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSE-------I-----IEDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHH-------H-----cccCCCceEeCCCcHHH
Confidence 567799877764 23442 2556553 5799999875422111 1 11122233443458999
Q ss_pred HHHHHHhhcCC
Q 027662 183 LVKKLEEYVPC 193 (220)
Q Consensus 183 ~~~~l~~~~~~ 193 (220)
+.+.|.+....
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 98888876643
No 243
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=26.44 E-value=2.9e+02 Score=24.51 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCH
Q 027662 101 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTV 180 (220)
Q Consensus 101 Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 180 (220)
+...++..||++|. +.| +. +.|++. .++|++.....+-+..+ +..| ..+.+..|+
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~~e~-------~~~g-------~~~lv~~d~ 321 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTERPET-------VEAG-------TNKLVGTDK 321 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCChHH-------HhcC-------ceEEeCCCH
Confidence 44456778887654 443 32 345554 36999986322223221 1111 123445799
Q ss_pred HHHHHHHHhhcC
Q 027662 181 KELVKKLEEYVP 192 (220)
Q Consensus 181 ee~~~~l~~~~~ 192 (220)
+++.+.+.+.+.
T Consensus 322 ~~i~~ai~~ll~ 333 (365)
T TIGR00236 322 ENITKAAKRLLT 333 (365)
T ss_pred HHHHHHHHHHHh
Confidence 999999988664
No 244
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=26.42 E-value=3.9e+02 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.5
Q ss_pred hCCeEEEecCCC
Q 027662 108 HSDAFIALPGGY 119 (220)
Q Consensus 108 ~sDa~VvlpGG~ 119 (220)
.+|++|+++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 589999999984
No 245
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.34 E-value=4.8e+02 Score=24.39 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHH-----CCCeEEEcCC--------------CcChHH-HHHHHHHhcCCeEEEEe
Q 027662 29 YQDAAIELGKELVS-----RNIDLVYGGG--------------SIGLMG-LVSQAVHDGGRHVIGVI 75 (220)
Q Consensus 29 ~~~~A~~lG~~LA~-----~G~~lv~GGg--------------~~GlM~-a~a~gA~~~GG~viGi~ 75 (220)
-.+....+.+.+.+ .-..|||||+ ..|-|+ ++++.+.+.|..|+.+.
T Consensus 166 ~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 166 PETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred HHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 33555666666644 1446788884 148674 56788888899998874
No 246
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.18 E-value=94 Score=28.41 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=33.9
Q ss_pred hhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHh
Q 027662 8 QLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHD 66 (220)
Q Consensus 8 ~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 66 (220)
..++...-||.-|+.++... +.++.||++|+.++-=+-...=-+++++.-.+
T Consensus 44 ~~~~~g~WAVVTGaTDGIGK-------ayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~ 95 (312)
T KOG1014|consen 44 LKEKLGSWAVVTGATDGIGK-------AYARELAKRGFNVVLISRTQEKLEAVAKEIEE 95 (312)
T ss_pred hHHhcCCEEEEECCCCcchH-------HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 34455577888787776553 34566788899988777665556666665443
No 247
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.13 E-value=2.1e+02 Score=26.20 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=11.0
Q ss_pred hhCCeEEEecCCC
Q 027662 107 KHSDAFIALPGGY 119 (220)
Q Consensus 107 ~~sDa~VvlpGG~ 119 (220)
..+|++|+++||.
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 3689999999984
No 248
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=26.12 E-value=91 Score=21.93 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHhh
Q 027662 149 YYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEY 190 (220)
Q Consensus 149 ~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 190 (220)
=|+.+..+++.+.+.|++. .....+.+++--.++++.++++
T Consensus 32 ~~~~~~~yL~~L~~~gLI~-~~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLIK-KKDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp -HHHHHHHHHHHHHTTSEE-EETTEEEE-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCee-CCCCEEEECccHHHHHHHHHHH
Confidence 3566778889999999994 4667788888888998888765
No 249
>PRK07677 short chain dehydrogenase; Provisional
Probab=26.10 E-value=1.1e+02 Score=25.50 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
+++.|.|+++. ..+.+++.|+++|+.|+.-
T Consensus 2 k~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~ 31 (252)
T PRK07677 2 KVVIITGGSSG--------MGKAMAKRFAEEGANVVIT 31 (252)
T ss_pred CEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEE
Confidence 35566655432 3345666666777776543
No 250
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=26.08 E-value=1.8e+02 Score=25.42 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=22.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCC-CCCcEEEEe
Q 027662 112 FIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN 145 (220)
Q Consensus 112 ~VvlpGG~GTL~El~~~~~~~qlg~-~~kPiill~ 145 (220)
+|+.-||=||++|+...+. ..+. ...|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 6778899999999997762 2121 234787773
No 251
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=26.04 E-value=8.1e+02 Score=25.97 Aligned_cols=16 Identities=25% Similarity=-0.056 Sum_probs=9.2
Q ss_pred EEEcCCHHHHHHHHHh
Q 027662 174 IVSAPTVKELVKKLEE 189 (220)
Q Consensus 174 i~~~~~~ee~~~~l~~ 189 (220)
+.+++|.+|+.+.+.+
T Consensus 178 v~iv~~~eeL~~~~~~ 193 (1050)
T TIGR01369 178 GGIAYNREELKEIAER 193 (1050)
T ss_pred eEEECCHHHHHHHHHH
Confidence 4556666666655544
No 252
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=25.98 E-value=46 Score=25.96 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEecCCCCcHHHHH-H---HHHHHH-hCCCCCcEEEEeC
Q 027662 112 FIALPGGYGTLEELL-E---VITWAQ-LGIHDKPVGLLNV 146 (220)
Q Consensus 112 ~VvlpGG~GTL~El~-~---~~~~~q-lg~~~kPiill~~ 146 (220)
.|++|||.|..+-+. . +..+.+ ...++|||..+-.
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~ 79 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICH 79 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETT
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCC
Confidence 788999999665554 1 222222 1235789987743
No 253
>PLN02275 transferase, transferring glycosyl groups
Probab=25.91 E-value=4.8e+02 Score=23.33 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCeEEEec-C--CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEE
Q 027662 99 HQRKAEMAKHSDAFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV 175 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~Vvlp-G--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 175 (220)
.+.-..++..||++|... . |.|--.=+.|+++ .++||+..+.+|. .+ ++.+| ....+
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~----~e----iv~~g-----~~G~l- 356 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI----GE----LVKDG-----KNGLL- 356 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh----HH----HccCC-----CCeEE-
Confidence 344456788999998631 2 2233344667664 4799998876542 12 22221 11222
Q ss_pred EcCCHHHHHHHHHhh
Q 027662 176 SAPTVKELVKKLEEY 190 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~ 190 (220)
++|++++.+.|.+.
T Consensus 357 -v~~~~~la~~i~~l 370 (371)
T PLN02275 357 -FSSSSELADQLLEL 370 (371)
T ss_pred -ECCHHHHHHHHHHh
Confidence 35788888887653
No 254
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.85 E-value=4.7e+02 Score=23.22 Aligned_cols=110 Identities=11% Similarity=0.143 Sum_probs=71.6
Q ss_pred chhhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCC
Q 027662 5 SEVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPREL 84 (220)
Q Consensus 5 ~~~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~ 84 (220)
.|......-++=|++.++.. -|+-++ .-+-++.|++.||.|+-=. .=.-.+++.-.+.|-. .|+|-.- |.
T Consensus 93 RE~~~t~wiKlEVi~d~~tL-lPD~~e-tl~Aae~Lv~eGF~VlPY~---~dD~v~arrLee~Gca--avMPl~a-PI-- 162 (262)
T COG2022 93 REALGTNWIKLEVIGDEKTL-LPDPIE-TLKAAEQLVKEGFVVLPYT---TDDPVLARRLEEAGCA--AVMPLGA-PI-- 162 (262)
T ss_pred HHHccCCeEEEEEecCCccc-CCChHH-HHHHHHHHHhCCCEEeecc---CCCHHHHHHHHhcCce--Eeccccc-cc--
Confidence 34455566678899776654 343333 3567888999999987322 2344567777777755 5565321 11
Q ss_pred CCCCCceeeecCCH--HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHH
Q 027662 85 TGETVGEVKAVADM--HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWA 132 (220)
Q Consensus 85 ~~~~~~~~~~~~~m--~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~ 132 (220)
..+ .++ ..=.+++++.+|+=|++--|+||.+...+++.|.
T Consensus 163 GSg--------~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG 204 (262)
T COG2022 163 GSG--------LGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELG 204 (262)
T ss_pred cCC--------cCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcc
Confidence 011 111 2235678889999999999999999999998764
No 255
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.84 E-value=2e+02 Score=23.93 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=42.1
Q ss_pred HHHHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 100 QRKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
+...-++..||++|... .|+|+- +.|++. .++|++.-+.++. . ++ +..+ ....++-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~------~G~pvI~~~~~~~-~---~~----~~~~-----~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLV--LLEAMA------CGLPVVATDVGGI-P---EI----ITDG-----ENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChH--HHHHHh------cCCCEEEecCCCh-H---HH----hcCC-----cceeEECC
Confidence 33455678899877543 333332 455553 4799988765432 1 21 1111 11245556
Q ss_pred CCHHHHHHHHHhhcCC
Q 027662 178 PTVKELVKKLEEYVPC 193 (220)
Q Consensus 178 ~~~ee~~~~l~~~~~~ 193 (220)
+|++++.+.|.+....
T Consensus 329 ~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 GDPEALAEAILRLLAD 344 (377)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 7999999998886643
No 256
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=25.83 E-value=1.5e+02 Score=22.47 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=22.5
Q ss_pred hhcccceEEEEcCCCCCC------ChHHHHHHHHHHHHHHHCCCeEE
Q 027662 8 QLSKFKRICVFCGSSQGK------KSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 8 ~~~~~~~I~V~ggS~~~~------~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
.+++...+.||||++.-. .+...+-.+..=+.|++.|+.|+
T Consensus 35 a~~~~l~aklfGGa~m~~~~~~~~~~IG~rNv~~a~~~L~~~gi~I~ 81 (114)
T PF03975_consen 35 ARPSRLEAKLFGGANMFPGMNSSSFNIGERNVEAARELLAEEGIPIV 81 (114)
T ss_dssp --GGG-EEEEEE----S------SS-HHHHHHHHHHHHHHHTT--EE
T ss_pred CCHHHeEEEEeeCcccccccccccCCHHHHHHHHHHHHHHHCCCcEE
Confidence 445566899999998754 24555666667778899999998
No 257
>PRK07890 short chain dehydrogenase; Provisional
Probab=25.75 E-value=3.1e+02 Score=22.60 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
++|.|.|+++. ..+.+++.|+++|+.|+..+-...-.+.........+.++..+
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 258
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=25.70 E-value=92 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHH-CCCeE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVS-RNIDL 47 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~-~G~~l 47 (220)
|++|.|+.+|..++. .+.|+.+.+.+.+ .|..+
T Consensus 1 M~kilIvy~S~~G~T---~~lA~~ia~g~~~~~G~ev 34 (200)
T PRK03767 1 MAKVLVLYYSMYGHI---ETMAEAVAEGAREVAGAEV 34 (200)
T ss_pred CCeEEEEEcCCCCHH---HHHHHHHHHHHhhcCCcEE
Confidence 346777777776532 2566777777766 66554
No 259
>PRK10037 cell division protein; Provisional
Probab=25.46 E-value=1.4e+02 Score=25.35 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|+.|+|+ +..-+.... -.|..|+..||++|+.++
T Consensus 1 ~~~iav~-n~KGGvGKT--T~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 1 MAILGLQ-GVRGGVGTT--SITAALAWSLQMLGENVL 34 (250)
T ss_pred CcEEEEe-cCCCCccHH--HHHHHHHHHHHhcCCcEE
Confidence 5678887 444343332 367889999999998654
No 260
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.38 E-value=97 Score=24.28 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.1
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
+.-.++|+|+|..+.+ ..||+.|.+.||.|+
T Consensus 7 ~~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp -----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 3344589999655544 458899999999865
No 261
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=25.35 E-value=1.8e+02 Score=24.71 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=21.2
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCCcChH
Q 027662 18 FCGSSQGKKSSYQDAAIELGKELVSRN--IDLVYGGGSIGLM 57 (220)
Q Consensus 18 ~ggS~~~~~~~~~~~A~~lG~~LA~~G--~~lv~GGg~~GlM 57 (220)
||||...+.+...+.++++.+.. +.| ..||.||+. +..
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g-~~~ 45 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG-GTT 45 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC-chh
Confidence 77777654344555566665543 444 456677753 443
No 262
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=25.30 E-value=5.3e+02 Score=23.60 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCeEEE-ecCCCCcHHHHHHHHHHHHhCC-CCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHH
Q 027662 109 SDAFIA-LPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKK 186 (220)
Q Consensus 109 sDa~Vv-lpGG~GTL~El~~~~~~~qlg~-~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~ 186 (220)
.|++++ ++||+.-.+++.+.+.-..-.. ++||+++-..+.-.+...+. +.+.|+ .+.+.++++++++.
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~~---L~~~G~-------~ip~~~~~~~Av~~ 380 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKKI---LAESGL-------NIIFATSMEEAAEK 380 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH---HHHcCC-------CccccCCHHHHHHH
Confidence 466554 5788877778876654322111 24899654332122333332 333342 25578899999887
Q ss_pred HHh
Q 027662 187 LEE 189 (220)
Q Consensus 187 l~~ 189 (220)
+-+
T Consensus 381 ~~~ 383 (386)
T TIGR01016 381 AVE 383 (386)
T ss_pred HHH
Confidence 654
No 263
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=25.25 E-value=2.7e+02 Score=25.90 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEc
Q 027662 100 QRKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA 177 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 177 (220)
+....++..||++|.-. .|+|. =++|+++ .++|||..+.+|. ..++. .. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~eiv~-------~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDIIP-------PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhhhh-------cC--CCCCceEEeCC
Confidence 44556788999887432 23343 2556664 4699998776543 22211 10 00122334445
Q ss_pred CCHHHHHHHHHhhcC
Q 027662 178 PTVKELVKKLEEYVP 192 (220)
Q Consensus 178 ~~~ee~~~~l~~~~~ 192 (220)
+|++++.+.|.+...
T Consensus 385 ~d~~~la~~i~~ll~ 399 (465)
T PLN02871 385 GDVDDCVEKLETLLA 399 (465)
T ss_pred CCHHHHHHHHHHHHh
Confidence 788888888877553
No 264
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.19 E-value=1.5e+02 Score=26.31 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
|+|+|+. +.. .+.-.+.+.++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4689982 333 3455578899999999999987763
No 265
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.16 E-value=1.1e+02 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=19.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
|++|.|.|+++. ....+.+.|+++|+.|+.-
T Consensus 1 ~~~vlItGas~g--------iG~~~a~~l~~~G~~Vi~~ 31 (243)
T PRK07102 1 MKKILIIGATSD--------IARACARRYAAAGARLYLA 31 (243)
T ss_pred CcEEEEEcCCcH--------HHHHHHHHHHhcCCEEEEE
Confidence 457778866532 3355666777778876543
No 266
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=25.12 E-value=1.4e+02 Score=27.22 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=10.3
Q ss_pred eEEEecCCCCc
Q 027662 111 AFIALPGGYGT 121 (220)
Q Consensus 111 a~VvlpGG~GT 121 (220)
|+|+|-||.||
T Consensus 2 a~vllaGG~GT 12 (315)
T cd06424 2 VFVLVAGGLGE 12 (315)
T ss_pred EEEEecCCCcc
Confidence 78999999999
No 267
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=25.05 E-value=1.1e+02 Score=25.48 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=17.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHH
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELG 37 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG 37 (220)
+++|+|||||=.+...-+...|+++-
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~ 28 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAA 28 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHH
Confidence 56899999998766655554444433
No 268
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=24.92 E-value=88 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=17.4
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH
Q 027662 18 FCGSSQGKKSSYQDAAIELGKELVS 42 (220)
Q Consensus 18 ~ggS~~~~~~~~~~~A~~lG~~LA~ 42 (220)
||||...+.+.+.+.++++.+....
T Consensus 6 ~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 6 FGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred ECchhcCCHHHHHHHHHHHHHHHHC
Confidence 8899887555666677777766543
No 269
>PRK05867 short chain dehydrogenase; Provisional
Probab=24.90 E-value=3.5e+02 Score=22.39 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
+++-|.|+++. ...++.+.|+++|+.|+..+-...-.+...+...+.++++..+
T Consensus 10 k~vlVtGas~g--------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGASTG--------IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 270
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=24.76 E-value=4.1e+02 Score=22.13 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchH
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 152 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 152 (220)
.|++|++-=..-+++++-.+.... ..+|++++|+ -|++
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~~----~~rpvvl~Np--~l~~ 135 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEAA----GGRPVVLLNP--QLED 135 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHhc----CCCeEEEEec--cccc
Confidence 577666655555577776554321 2489999996 4553
No 271
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.75 E-value=2.8e+02 Score=24.14 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNID----------------LVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~----------------lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
|+++|+ .+ +.-.+.+.++-++|.+.|+. +|+=||. |-|=-+++.+ +-.++||
T Consensus 1 m~~~~~--~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgi 68 (256)
T PRK14075 1 MKLGIF--YR----EEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGF 68 (256)
T ss_pred CEEEEE--eC----ccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEE
Confidence 467777 22 22336778888888877642 3444554 7775555544 6667777
No 272
>PRK12359 flavodoxin FldB; Provisional
Probab=24.72 E-value=63 Score=26.68 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHH
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKEL 40 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~L 40 (220)
|+|+||.+|..++.. +.|+.+.+.+
T Consensus 1 Mki~I~Y~S~TGNTe---~vAe~I~~~l 25 (172)
T PRK12359 1 MKIGLFYGSSTCYTE---MAAEKIRDII 25 (172)
T ss_pred CeEEEEEECCCCHHH---HHHHHHHHHh
Confidence 467777788887543 3445554443
No 273
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.71 E-value=4.4e+02 Score=22.50 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=23.0
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 145 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 145 (220)
|+...|++|++-|+ |--.|+..++...+ ..+-|++.+.
T Consensus 83 ~i~~~DvviaiS~S-GeT~el~~~~~~aK--~~g~~liaiT 120 (202)
T COG0794 83 MITPGDVVIAISGS-GETKELLNLAPKAK--RLGAKLIAIT 120 (202)
T ss_pred CCCCCCEEEEEeCC-CcHHHHHHHHHHHH--HcCCcEEEEe
Confidence 45567877777654 55567776664332 2346777664
No 274
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=24.67 E-value=2.1e+02 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.077 Sum_probs=18.4
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCCeEEEEeC
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIP 76 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P 76 (220)
..+|.|+|..|++ +..-|+..|.+++.+..
T Consensus 186 ~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHV--AVKIGKAFGLKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEeC
Confidence 4556555544443 55667778888877643
No 275
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.61 E-value=1.1e+02 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
.+++.|.|+++ + ...++++.|+++|+.|+..+
T Consensus 14 gk~~lITGas~-G-------IG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 14 GKRAVVTGASD-G-------LGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred CCEEEEeCCCC-h-------HHHHHHHHHHHCCCEEEEEe
Confidence 34566665443 2 33566777788898877554
No 276
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=24.58 E-value=2.9e+02 Score=25.11 Aligned_cols=76 Identities=21% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHhhCC-eEEEecCCCCcHHHHHHHHHHHHhCC-CCCcEEEEeC---CCcchHHHHHHHHHH---HcCCCCccccccE
Q 027662 103 AEMAKHSD-AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLNV---DGYYNSLLSFIDKAV---EEGFISPSARQII 174 (220)
Q Consensus 103 ~~m~~~sD-a~VvlpGG~GTL~El~~~~~~~qlg~-~~kPiill~~---~g~w~~l~~~l~~~~---~~g~i~~~~~~~i 174 (220)
..+++.+. ++|+|-||.||- ++. .+||++=+.. .-+.+-+.+.+..+- .+.+-.......+
T Consensus 8 ~~~i~~~~va~viLaGG~GTR-----------Lg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~ 76 (323)
T cd04193 8 LKAIAEGKVAVLLLAGGQGTR-----------LGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWY 76 (323)
T ss_pred HHHHhcCCEEEEEECCCcccc-----------cCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEE
Confidence 33455555 688899999993 343 3677765541 235555544443321 1111011112233
Q ss_pred EEcC--CHHHHHHHHHh
Q 027662 175 VSAP--TVKELVKKLEE 189 (220)
Q Consensus 175 ~~~~--~~ee~~~~l~~ 189 (220)
+.++ +-+++.+++++
T Consensus 77 imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 77 IMTSEATHEETRKFFKE 93 (323)
T ss_pred EEcChhHhHHHHHHHHh
Confidence 3333 45667777765
No 277
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.57 E-value=5.1e+02 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCC
Q 027662 99 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGI 136 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~ 136 (220)
.+|...+.+..|.-++|-||+|+-+|-+... .+.|.
T Consensus 188 ~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a--i~~Gi 223 (283)
T PRK07998 188 IPLLKRIAEVSPVPLVIHGGSGIPPEILRSF--VNYKV 223 (283)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 5788888888899999999999998877433 34454
No 278
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=24.55 E-value=1.7e+02 Score=27.75 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=44.2
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHH-H
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLE-E 124 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~-E 124 (220)
.+|.|.|+.| ..+++.++..|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 4567766544 34666677778887776322111000000111 1 12332 23568999998876666555 3
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCcc
Q 027662 125 LLEVITWAQLGIHDKPVGLLNVDGYY 150 (220)
Q Consensus 125 l~~~~~~~qlg~~~kPiill~~~g~w 150 (220)
.+..+ ++-.+++|.+.+-
T Consensus 285 ~~~~m--------K~GailiNvG~~d 302 (425)
T PRK05476 285 HMEAM--------KDGAILANIGHFD 302 (425)
T ss_pred HHhcC--------CCCCEEEEcCCCC
Confidence 33322 2335666765443
No 279
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=24.51 E-value=4.3e+02 Score=22.21 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=46.1
Q ss_pred HHHHHhhCCeEEEe-cCCCCcHHHHHHHHHHHHhCCCCCc-EE-EEeCCCcch---HHHHHHHHH---HHcCCCCccccc
Q 027662 102 KAEMAKHSDAFIAL-PGGYGTLEELLEVITWAQLGIHDKP-VG-LLNVDGYYN---SLLSFIDKA---VEEGFISPSARQ 172 (220)
Q Consensus 102 k~~m~~~sDa~Vvl-pGG~GTL~El~~~~~~~qlg~~~kP-ii-ll~~~g~w~---~l~~~l~~~---~~~g~i~~~~~~ 172 (220)
..-..+.+|.++++ .+..|-..+-..++.+.+ ..++| ++ ++|.-+.-+ .+....+.+ ....+++ ..
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~--~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~---~~ 171 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMETFEFLNILQ--VHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ---GA 171 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHH--HcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC---CC
Confidence 33346789976655 454444333334443332 23456 33 666443321 112222222 1122332 24
Q ss_pred cEEEcC-------CHHHHHHHHHhhcCCcccccccccccccccccc
Q 027662 173 IIVSAP-------TVKELVKKLEEYVPCHERVASKLNWEMEQLGYT 211 (220)
Q Consensus 173 ~i~~~~-------~~ee~~~~l~~~~~~~~~~~~~~~w~~~~~~~~ 211 (220)
.+++++ ...|..+.+.-.-.. ....+.| +++-||-
T Consensus 172 ki~~iSa~~~~~~~~~e~~~~~r~i~~~---~~~~~~~-r~~r~y~ 213 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVM---KFRPLNW-RNSHPYV 213 (225)
T ss_pred cEEEEeeccCCCCCHHHHHHHHHHHHhC---CCCCCee-ecCCCeE
Confidence 566665 566655544332222 2244678 7777773
No 280
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.49 E-value=1.4e+02 Score=27.62 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=11.2
Q ss_pred hhCCeEEEecCCC
Q 027662 107 KHSDAFIALPGGY 119 (220)
Q Consensus 107 ~~sDa~VvlpGG~ 119 (220)
..+|++|+++||.
T Consensus 87 ~~~D~IiaiGGGS 99 (383)
T PRK09860 87 NNCDSVISLGGGS 99 (383)
T ss_pred cCCCEEEEeCCch
Confidence 4689999999984
No 281
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.47 E-value=3e+02 Score=23.42 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=33.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV-YGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
+.|+|+ |. .++ +.|.++++.|.+.|+.++ -+--..+-++++.+-..+.....||.
T Consensus 16 ~~iaV~---r~-~~~---~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGA 71 (212)
T PRK05718 16 PVVPVI---VI-NKL---EDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGA 71 (212)
T ss_pred CEEEEE---Ec-CCH---HHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEE
Confidence 468888 22 122 466888888888888775 11122356666655555556666776
No 282
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=24.43 E-value=75 Score=30.10 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCeEEEcCC----------CcChHHHHHHHHHhc
Q 027662 32 AAIELGKELVSRNIDLVYGGG----------SIGLMGLVSQAVHDG 67 (220)
Q Consensus 32 ~A~~lG~~LA~~G~~lv~GGg----------~~GlM~a~a~gA~~~ 67 (220)
.|+.|+..|-++|+.||+||- +.|+.++.++-.++.
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 466778888889999999984 247777777777764
No 283
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=24.38 E-value=2.7e+02 Score=23.44 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 100 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 100 ~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~ql-g~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
++....++.+|.+|+++ -.++.. -+..+... ...+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34445567899888875 333333 22222221 2357899999975222 11 223466777
Q ss_pred CHHHHHHHH
Q 027662 179 TVKELVKKL 187 (220)
Q Consensus 179 ~~ee~~~~l 187 (220)
+..|+++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 888888765
No 284
>PRK05866 short chain dehydrogenase; Provisional
Probab=24.33 E-value=2.8e+02 Score=24.06 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGG 52 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 52 (220)
++|-|.|+|+. ..+.+++.|+++|+.|+..+-
T Consensus 41 k~vlItGasgg--------IG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 41 KRILLTGASSG--------IGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred CEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEEC
Confidence 45666655431 345566667777887765543
No 285
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.32 E-value=1.2e+02 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
++|-|.|+++. ....+++.|+++|+.|+.-
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~ 35 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVGA 35 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEE
Confidence 46666655431 3355666667777776643
No 286
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=24.19 E-value=1.8e+02 Score=24.97 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=29.0
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
..+...|+|||||=.+...-+...|+..-+.+...++.+|
T Consensus 18 ~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 18 GPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 3566789999999877777777777777777766665444
No 287
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.18 E-value=3.9e+02 Score=21.65 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
++++|.|.|+++ .....+.+.|+++|+.++.-
T Consensus 4 ~~~~ilI~Gasg--------~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASG--------GIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEE
Confidence 345788887664 24456777778889887755
No 288
>PRK04155 chaperone protein HchA; Provisional
Probab=24.18 E-value=73 Score=28.54 Aligned_cols=34 Identities=32% Similarity=0.275 Sum_probs=21.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHh----CCCCCcEEEE
Q 027662 111 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLL 144 (220)
Q Consensus 111 a~VvlpGG~GTL~El~~~~~~~ql----g~~~kPiill 144 (220)
..|++|||.|.+..+.+--...++ ..++|||..+
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 578899999997765432222221 1357888765
No 289
>PLN02494 adenosylhomocysteinase
Probab=24.16 E-value=2.7e+02 Score=27.02 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=38.7
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcH-H
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTL-E 123 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL-~ 123 (220)
-.+|.|.|+.| ..+++-++..|-+|+.+-.......+.....+. +.++. -.+..+|.||...|..+.+ .
T Consensus 256 tVvViGyG~IG--r~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~le----Eal~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 256 VAVICGYGDVG--KGCAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLE----DVVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred EEEEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHH----HHHhhCCEEEECCCCccchHH
Confidence 34567777655 456666777788888773221100000001111 11332 2467899999988877765 4
Q ss_pred HHHH
Q 027662 124 ELLE 127 (220)
Q Consensus 124 El~~ 127 (220)
+.+.
T Consensus 326 e~L~ 329 (477)
T PLN02494 326 DHMR 329 (477)
T ss_pred HHHh
Confidence 4443
No 290
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=24.13 E-value=2e+02 Score=24.71 Aligned_cols=77 Identities=25% Similarity=0.185 Sum_probs=40.2
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCc---
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGT--- 121 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GT--- 121 (220)
..+|..=-+.=.|.-++++++..||..+ +. +..+....+++.+|++++=+ |.++
T Consensus 8 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~---~~-------------------~~~e~~~~~l~~~d~vvi~~-G~l~~~~ 64 (242)
T cd01170 8 KPLVHCITNYVVMNFVANVLLAIGASPI---MS-------------------DAPEEVEELAKIAGALVINI-GTLTSEQ 64 (242)
T ss_pred CCeEEEccchhhHhHHHHHHHHhCCchh---hc-------------------CCHHHHHHHHHHcCcEEEeC-CCCChHH
Confidence 3344333343458888999999887633 00 12333444577889888833 3333
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027662 122 LEELLEVITWAQLGIHDKPVGLLNVD 147 (220)
Q Consensus 122 L~El~~~~~~~qlg~~~kPiill~~~ 147 (220)
.+.+..+.. ....+++|++ +++.
T Consensus 65 ~~~i~~~~~--~~~~~~~pvV-lDp~ 87 (242)
T cd01170 65 IEAMLKAGK--AANQLGKPVV-LDPV 87 (242)
T ss_pred HHHHHHHHH--HHHhcCCCEE-Eccc
Confidence 122222211 1223567865 5665
No 291
>PRK00625 shikimate kinase; Provisional
Probab=24.09 E-value=2.8e+02 Score=22.60 Aligned_cols=78 Identities=22% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC--ccc----CCCCCCCCCcee-eecCCHHHHHHHHHh
Q 027662 35 ELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK--TLM----PRELTGETVGEV-KAVADMHQRKAEMAK 107 (220)
Q Consensus 35 ~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~--~~~----~~e~~~~~~~~~-~~~~~m~~Rk~~m~~ 107 (220)
++-+.+...+..|.+|||. ++..-+...++.+|.+|-+-.. ... .+... +..... .+..-+.+|....-+
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~-~~~~~~~~~~~ll~~R~~~Y~~ 141 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLP-ERLKHAPSLEEILSQRIDRMRS 141 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCC-cccCcHHHHHHHHHHHHHHHHH
Confidence 3334454566666677764 4544555567777887776322 111 11111 001000 112234678887666
Q ss_pred hCCeEEEe
Q 027662 108 HSDAFIAL 115 (220)
Q Consensus 108 ~sDa~Vvl 115 (220)
.||..|-.
T Consensus 142 ~ad~~i~~ 149 (173)
T PRK00625 142 IADYIFSL 149 (173)
T ss_pred HCCEEEeC
Confidence 78887643
No 292
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=24.05 E-value=1.5e+02 Score=25.04 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|++|+|+ + .-+.... -.|..|+..||+.|+.++
T Consensus 1 m~~iav~-~-KGGvGKT--T~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGKS--TTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCHH--HHHHHHHHHHHhCCCeEE
Confidence 5689998 4 4343332 367889999999998654
No 293
>PRK13054 lipid kinase; Reviewed
Probab=23.94 E-value=2.1e+02 Score=25.12 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=22.2
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEE
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 144 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill 144 (220)
.| .|+.-||=||++|+...+.-.. ..+..|+.++
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 45 6678899999999987763111 1123577776
No 294
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=23.94 E-value=2.6e+02 Score=23.42 Aligned_cols=72 Identities=13% Similarity=0.307 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCeEEEe---cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 027662 100 QRKAEMAKHSDAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS 176 (220)
Q Consensus 100 ~Rk~~m~~~sDa~Vvl---pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 176 (220)
+...-++..||++|.- ..|+|. =++|++. .++|++.-+..+. . +++ .. .....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~-~---e~i----~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGGM-A---ELV----RD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCCH-H---HHh----cC-----CCcEEEEC
Confidence 4445578889987753 234443 2556554 4699998765432 2 211 11 12234555
Q ss_pred cCCHHHHHHHHHhhcC
Q 027662 177 APTVKELVKKLEEYVP 192 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~~ 192 (220)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6678999999887654
No 295
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.87 E-value=1.8e+02 Score=26.06 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=23.7
Q ss_pred hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027662 108 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 147 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~ 147 (220)
.+| +|+.-||=||+.+.+..+ ...+.||+-+|.+
T Consensus 62 ~~d-~vi~~GGDGt~l~~~~~~-----~~~~~Pvlgin~G 95 (295)
T PRK01231 62 VCD-LVIVVGGDGSLLGAARAL-----ARHNVPVLGINRG 95 (295)
T ss_pred CCC-EEEEEeCcHHHHHHHHHh-----cCCCCCEEEEeCC
Confidence 456 556668899998887543 2357899888864
No 296
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.85 E-value=4.4e+02 Score=25.55 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCC-CeEEEcCCCc--ChHHHHHHHHHhcCCeEE------EEeCCcccCCCCCCCCCceeeecCCHHHHH
Q 027662 32 AAIELGKELVSRN-IDLVYGGGSI--GLMGLVSQAVHDGGRHVI------GVIPKTLMPRELTGETVGEVKAVADMHQRK 102 (220)
Q Consensus 32 ~A~~lG~~LA~~G-~~lv~GGg~~--GlM~a~a~gA~~~GG~vi------Gi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk 102 (220)
...++.+.|.+.. -.|+.|+|-. |..+++.+=|-+.|-.|+ |++|+ .|+.+.-..-...-..-+
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~-------~hp~~~G~~G~~~~~~~~ 267 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPG-------THKNSLGMLGMHGRYEAN 267 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCC-------CCcccccCCccCCCHHHH
Confidence 3455556666544 5556666642 667777766666776655 33332 122221111011112333
Q ss_pred HHHHhhCCeEEEecCCCCc
Q 027662 103 AEMAKHSDAFIALPGGYGT 121 (220)
Q Consensus 103 ~~m~~~sDa~VvlpGG~GT 121 (220)
. .++.||.+|+++-.++.
T Consensus 268 ~-~~~~aD~vl~vG~~~~~ 285 (572)
T PRK08979 268 M-AMHNADLIFGIGVRFDD 285 (572)
T ss_pred H-HHHhCCEEEEEcCCCCc
Confidence 3 56789999998865443
No 297
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.85 E-value=3.9e+02 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcCh
Q 027662 27 SSYQDAAIELGKELVSRNIDLVYGGGSIGL 56 (220)
Q Consensus 27 ~~~~~~A~~lG~~LA~~G~~lv~GGg~~Gl 56 (220)
+...+.++.+.+.+.+.+...++|-|..+.
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 455566666677776779999999876444
No 298
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=23.78 E-value=68 Score=29.19 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=19.4
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEEe
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGVI 75 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi~ 75 (220)
.||.|||..|++.|+ .|.++|-+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 467799987887554 5677888888884
No 299
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=23.75 E-value=2.9e+02 Score=24.18 Aligned_cols=10 Identities=10% Similarity=0.022 Sum_probs=4.9
Q ss_pred CCeEEEecCC
Q 027662 109 SDAFIALPGG 118 (220)
Q Consensus 109 sDa~VvlpGG 118 (220)
.|++|||++|
T Consensus 45 ~d~ivVLGa~ 54 (239)
T PRK10834 45 RQVGVVLGTA 54 (239)
T ss_pred CCEEEEcCCc
Confidence 4455555543
No 300
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=23.71 E-value=5.5e+02 Score=23.46 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHHHhhCCeEEEe-cC--CCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEE
Q 027662 99 HQRKAEMAKHSDAFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIV 175 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~Vvl-pG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 175 (220)
.+....++..||++|.+ +. |.|--.-++|+++ .++||+..+.+| .. + ++++| ....+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~-~~---e----iv~~~-----~~G~l- 364 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC-ID---E----LVKHG-----ENGLV- 364 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC-HH---H----HhcCC-----CCEEE-
Confidence 34455578899999853 21 2333345666664 479999877542 22 2 22221 11222
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027662 176 SAPTVKELVKKLEEYVP 192 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~~ 192 (220)
++|++++.+.|.+...
T Consensus 365 -v~d~~~la~~i~~ll~ 380 (415)
T cd03816 365 -FGDSEELAEQLIDLLS 380 (415)
T ss_pred -ECCHHHHHHHHHHHHh
Confidence 2689999888887654
No 301
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=23.69 E-value=4e+02 Score=24.28 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=18.1
Q ss_pred CeEEEecCCCCcHHHHHHHHH
Q 027662 110 DAFIALPGGYGTLEELLEVIT 130 (220)
Q Consensus 110 Da~VvlpGG~GTL~El~~~~~ 130 (220)
-..|.+|--.|.|.++...+.
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~ 327 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIA 327 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHh
Confidence 467889999999999998775
No 302
>PRK08264 short chain dehydrogenase; Validated
Probab=23.60 E-value=4e+02 Score=21.62 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=16.4
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCC-eEEEE
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGR-HVIGV 74 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG-~viGi 74 (220)
..||+||. +|+=.++++...+.|- +|+.+
T Consensus 8 ~vlItGgs-g~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGAN-RGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCcccEEEE
Confidence 44566655 3666666666666655 55444
No 303
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.56 E-value=4.2e+02 Score=22.81 Aligned_cols=69 Identities=9% Similarity=0.185 Sum_probs=41.5
Q ss_pred cceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHH--HHHHHhcCCeEEEEeCCcccC
Q 027662 12 FKRICVFCGSSQGK---KSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLV--SQAVHDGGRHVIGVIPKTLMP 81 (220)
Q Consensus 12 ~~~I~V~ggS~~~~---~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~--a~gA~~~GG~viGi~P~~~~~ 81 (220)
..-|.|.|++.... .++..+..+...+.. .....|+.|-|....-+++ ++-|.+.|-.-+-++|....+
T Consensus 32 v~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~ 105 (281)
T cd00408 32 VDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK 105 (281)
T ss_pred CCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 34566776555542 345544544444443 3357788888765554444 566778888888888765543
No 304
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.47 E-value=1.2e+02 Score=25.76 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHCCCeEE-EcCCCcChHHHHHHHHHhcCCeEEEEeCCcc----cCCCCCCCCCceeeecCCHHHHHHHHH
Q 027662 32 AAIELGKELVSRNIDLV-YGGGSIGLMGLVSQAVHDGGRHVIGVIPKTL----MPRELTGETVGEVKAVADMHQRKAEMA 106 (220)
Q Consensus 32 ~A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~----~~~e~~~~~~~~~~~~~~m~~Rk~~m~ 106 (220)
.|-.|+++==+.|-.++ -|+|. |-+..-.- ..--.+++++|--+.. ..+......+..+.+..+-. -..+-
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~ 98 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP 98 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc
Confidence 34445544444565555 57775 66533222 3345779999921100 00000011133333322211 11122
Q ss_pred hh--CCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCC
Q 027662 107 KH--SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGF 165 (220)
Q Consensus 107 ~~--sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~ 165 (220)
.. -| .|+++|| |+++|+++++ |..+..-. -++.|.- --+.+...++.+.+.|+
T Consensus 99 ~~~~~d-aiFIGGg-~~i~~ile~~-~~~l~~gg--rlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 99 DLPSPD-AIFIGGG-GNIEEILEAA-WERLKPGG--RLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred CCCCCC-EEEECCC-CCHHHHHHHH-HHHcCcCC--eEEEEee-cHHHHHHHHHHHHHcCC
Confidence 32 44 4566777 9999999975 54432211 3445532 11223333445555565
No 305
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.47 E-value=1.9e+02 Score=26.19 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=31.5
Q ss_pred HhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCC--Ccc-----hHHHHHHHHHHHcCC
Q 027662 106 AKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVEEGF 165 (220)
Q Consensus 106 ~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g~ 165 (220)
.+.+|.+| .-||=||+-..+. +...+++||+-+|.+ ||. +.+.+.++.+.+..|
T Consensus 70 ~~~~D~vi-~lGGDGT~L~aar-----~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 70 ADGCELVL-VLGGDGTILRAAE-----LARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred ccCCCEEE-EEcCCHHHHHHHH-----HhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc
Confidence 34577554 4578999865543 223457899888865 553 334445555554443
No 306
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=23.46 E-value=3.2e+02 Score=22.85 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcC
Q 027662 101 RKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAP 178 (220)
Q Consensus 101 Rk~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 178 (220)
...-++..||++|.-. .|+|+ =+.|++. .++|++.-+..++ ..+ +.. .. .++..+
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~--~~~Eama------~G~PvI~~~~~~~-~~~---~~~--~~---------~~~~~~ 330 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGI--VVAEALA------CGTPVVTTDKVPW-QEL---IEY--GC---------GWVVDD 330 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCc--HHHHHHh------cCCCEEEcCCCCH-HHH---hhc--Cc---------eEEeCC
Confidence 3444677799877543 45555 2566664 4699998765432 222 211 12 234456
Q ss_pred CHHHHHHHHHhhcC
Q 027662 179 TVKELVKKLEEYVP 192 (220)
Q Consensus 179 ~~ee~~~~l~~~~~ 192 (220)
+++++.+.|.+...
T Consensus 331 ~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 DVDALAAALRRALE 344 (375)
T ss_pred ChHHHHHHHHHHHh
Confidence 66888777776543
No 307
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=23.44 E-value=2.2e+02 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCC
Q 027662 57 MGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 57 M~a~a~gA~~~GG~viGi~P~ 77 (220)
|+.+.+-..+.|..++|-.|.
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~~ 120 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWPT 120 (167)
T ss_pred HHHHHHHHHHcCCeEEceecC
Confidence 455555555567777776554
No 308
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.41 E-value=1.4e+02 Score=24.59 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVY 49 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 49 (220)
|++|.|.|+++. ..+.+.+.|+++|+.|+.
T Consensus 1 ~~~vlItGasgg--------iG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSRG--------LGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCcc--------hHHHHHHHHHhCCCEEEE
No 309
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=23.37 E-value=2.8e+02 Score=21.76 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=33.2
Q ss_pred ceEEEEcCCCC--CCChHHHHHHHHHHHHHHHCCCeEEE-----cCCCcChHHHHHH
Q 027662 13 KRICVFCGSSQ--GKKSSYQDAAIELGKELVSRNIDLVY-----GGGSIGLMGLVSQ 62 (220)
Q Consensus 13 ~~I~V~ggS~~--~~~~~~~~~A~~lG~~LA~~G~~lv~-----GGg~~GlM~a~a~ 62 (220)
+.|.|...+.. .+...-.+..++|+++|.++|+.+-. +.+. |+...++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 45555556652 22356667889999999999988642 5665 99876643
No 310
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=23.36 E-value=3.6e+02 Score=24.69 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHHHhhCCeEEEec--CC----CCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 027662 103 AEMAKHSDAFIALP--GG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS 176 (220)
Q Consensus 103 ~~m~~~sDa~Vvlp--GG----~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 176 (220)
..++..||++|.-. +. -|.-.=+.|+++ .++|||.-+.+|.- + ++ .......++-
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma------~G~PVI~t~~~g~~----E----~v-----~~~~~G~lv~ 353 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPVALMEAMA------VGIPVVSTLHSGIP----E----LV-----EADKSGWLVP 353 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccHHHHHHHh------CCCCEEEeCCCCch----h----hh-----cCCCceEEeC
Confidence 44778899887531 11 122234666664 46999988765431 2 11 1112233444
Q ss_pred cCCHHHHHHHHHhhcC
Q 027662 177 APTVKELVKKLEEYVP 192 (220)
Q Consensus 177 ~~~~ee~~~~l~~~~~ 192 (220)
..|++++.+.|.+...
T Consensus 354 ~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 354 ENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5688888888887654
No 311
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.34 E-value=1.2e+02 Score=25.78 Aligned_cols=32 Identities=16% Similarity=-0.019 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
+++|.|.|+++. ..+.+.+.|+++|+.|+..+
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEe
Confidence 356888866642 34566777778888877544
No 312
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.33 E-value=3.9e+02 Score=21.81 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred cccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 10 SKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 10 ~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
..++++.|.|+++. ....+.+.|+++|+.|+.-+-+..-...+.+...+.++.+.-+
T Consensus 4 ~~~k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (241)
T PRK07454 4 NSMPRALITGASSG--------IGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAY 60 (241)
T ss_pred CCCCEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE
No 313
>PRK07832 short chain dehydrogenase; Provisional
Probab=23.30 E-value=3.1e+02 Score=23.11 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCcee
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEV 92 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~ 92 (220)
+++.|.|+++. ....+.+.|+++|+.|+.-+-...-.+...+.....++..+-+++. .+.+.
T Consensus 1 k~vlItGas~g--------iG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------D~~~~ 62 (272)
T PRK07832 1 KRCFVTGAASG--------IGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRAL----------DISDY 62 (272)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEe----------eCCCH
Q ss_pred eecCCHHHHHHHHHhhCCeEEEecC
Q 027662 93 KAVADMHQRKAEMAKHSDAFIALPG 117 (220)
Q Consensus 93 ~~~~~m~~Rk~~m~~~sDa~VvlpG 117 (220)
.....+.++-......-|++|-..|
T Consensus 63 ~~~~~~~~~~~~~~~~id~lv~~ag 87 (272)
T PRK07832 63 DAVAAFAADIHAAHGSMDVVMNIAG 87 (272)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
No 314
>PRK06924 short chain dehydrogenase; Provisional
Probab=23.25 E-value=1.2e+02 Score=24.97 Aligned_cols=29 Identities=7% Similarity=0.231 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
|++|.|.|+++. ..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasgg--------iG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQG--------LGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCch--------HHHHHHHHHHhcCCEEE
No 315
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=23.12 E-value=3.1e+02 Score=25.58 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEEEeCC
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK 77 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~ 77 (220)
.+|+||.. -|-+++.+.........|+|+.+
T Consensus 54 DvVFGGee-KL~eaI~ea~e~y~P~lI~VvTT 84 (352)
T TIGR03282 54 DFVFGASE-KLVKVIRYAEEKFKPELIGVVGT 84 (352)
T ss_pred ceEeCcHH-HHHHHHHHHHHhcCCCEEEEECC
Confidence 45777664 67676666665566677777644
No 316
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=23.10 E-value=1.6e+02 Score=23.25 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHHHHHH-CCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 35 ELGKELVS-RNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 35 ~lG~~LA~-~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
++-+.+.. .+..|.|||| -++..-++..+...|.+|-+
T Consensus 53 ~~l~~l~~~~~~VIa~GGG--~~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 53 EALRELLKENNCVIACGGG--IVLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHHHCSSSEEEEE-TT--GGGSHHHHHHHHHHSEEEEE
T ss_pred HHHHHHhccCcEEEeCCCC--CcCcHHHHHHHHhCCEEEEE
Confidence 33344444 4777778876 46666677788888898888
No 317
>PRK07109 short chain dehydrogenase; Provisional
Probab=22.95 E-value=3.2e+02 Score=24.31 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=31.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
.++|.|.|+|+. ..+.+.+.|+++|+.|+.-+-..--.+.+.+...+.|+++..+
T Consensus 8 ~k~vlITGas~g--------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 8 RQVVVITGASAG--------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CCEEEEECCCCH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 357788866542 3466777888899988754432111233333344456666555
No 318
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.89 E-value=1.2e+02 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
++|.|.|+|+. ....+.+.|++.|+.|+--
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEE
Confidence 46777755532 3355666777778876643
No 319
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.86 E-value=1.4e+02 Score=26.08 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
++|.|+||+.+.-.. - .-++|.|+++|+.|
T Consensus 61 ~~V~VlcG~GNNGGD-G----lv~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGD-G----LVAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchh-H----HHHHHHHHHCCCeE
Confidence 478899888653222 2 33667777788865
No 320
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=22.85 E-value=2.7e+02 Score=25.65 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCC-CceeeecC--CHHHHHHHH
Q 027662 29 YQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGET-VGEVKAVA--DMHQRKAEM 105 (220)
Q Consensus 29 ~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~-~~~~~~~~--~m~~Rk~~m 105 (220)
..+..+.+++..-...+.+|+|+|+ +-..+++.-.+.|-.++.|-.+...-.+..... -..++..+ +...-++.-
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~ 294 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEG 294 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcC
Confidence 3344444444333357888999876 444566755566778877732211000000000 01222222 223334445
Q ss_pred HhhCCeEEEecCCC
Q 027662 106 AKHSDAFIALPGGY 119 (220)
Q Consensus 106 ~~~sDa~VvlpGG~ 119 (220)
++.+|++|++.+.-
T Consensus 295 ~~~a~~vi~~~~~~ 308 (453)
T PRK09496 295 IDEADAFIALTNDD 308 (453)
T ss_pred CccCCEEEECCCCc
Confidence 67889999887764
No 321
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=22.69 E-value=5.6e+02 Score=23.36 Aligned_cols=90 Identities=16% Similarity=0.054 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHh--hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCC------
Q 027662 96 ADMHQRKAEMAK--HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFIS------ 167 (220)
Q Consensus 96 ~~m~~Rk~~m~~--~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~------ 167 (220)
.+|.+=-..+.+ ..++++++.-+.|+.+|-...+ ......+|||+.+-. |-+.+.-. .|-..|-|-
T Consensus 210 ~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~f--i~~~~~~KPVVa~~a-Grsap~G~---r~gHaGAi~~~~~G~ 283 (317)
T PTZ00187 210 TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEW--IKNNPIKKPVVSFIA-GITAPPGR---RMGHAGAIISGGKGT 283 (317)
T ss_pred CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHH--HHhhcCCCcEEEEEe-cCCCCCCC---cccchhhhhccCCCC
Confidence 455554555554 5668888877788886554332 222224799999854 44442111 011111111
Q ss_pred cc------ccccEEEcCCHHHHHHHHHhhc
Q 027662 168 PS------ARQIIVSAPTVKELVKKLEEYV 191 (220)
Q Consensus 168 ~~------~~~~i~~~~~~ee~~~~l~~~~ 191 (220)
.+ ...-+..++|++|+.+.+++.+
T Consensus 284 ~~~k~aal~qaGv~v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 284 APGKIEALEAAGVRVVKSPAQLGKTMLEVM 313 (317)
T ss_pred HHHHHHHHHHCCCeEeCCHHHHHHHHHHHH
Confidence 00 1122788999999999998754
No 322
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=22.66 E-value=2.9e+02 Score=26.25 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHC---------CCeEEEcCCCcC---hHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCH
Q 027662 31 DAAIELGKELVSR---------NIDLVYGGGSIG---LMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADM 98 (220)
Q Consensus 31 ~~A~~lG~~LA~~---------G~~lv~GGg~~G---lM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m 98 (220)
+.|...++.+|+. +..++||+-..| ++.|++..+.+.|.+++-+....+. +.+.+.+....+
T Consensus 120 ~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~------~~~~~~l~~~~~ 193 (445)
T PRK12422 120 DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT------EHLVSAIRSGEM 193 (445)
T ss_pred HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH------HHHHHHHhcchH
Confidence 3455666666541 335677653222 6888888888777776655322110 011110101122
Q ss_pred HHHHHHHHhhCCeEEE-----ecCCCCcHHHHHHHHHHHHhCCCCCcEEEE
Q 027662 99 HQRKAEMAKHSDAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 144 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~Vv-----lpGG~GTL~El~~~~~~~qlg~~~kPiill 144 (220)
++-.......|++++ +.|--.|.+|++..+.-.. ..++++++.
T Consensus 194 -~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlt 241 (445)
T PRK12422 194 -QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVIS 241 (445)
T ss_pred -HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEe
Confidence 122223456776554 3455567888887764322 235777765
No 323
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.62 E-value=2.3e+02 Score=25.07 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=0.0
Q ss_pred CcccchhhhcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHH
Q 027662 1 MEVQSEVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAV 64 (220)
Q Consensus 1 ~~~~~~~~~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA 64 (220)
||.|++ .+.|.|-|+|+-+.. .+|++.++++|+.|+-..-..--|...+.-+
T Consensus 1 ~e~~~~-----~k~VlItgcs~GGIG-------~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~ 52 (289)
T KOG1209|consen 1 SELQSQ-----PKKVLITGCSSGGIG-------YALAKEFARNGYLVYATARRLEPMAQLAIQF 52 (289)
T ss_pred CCcccC-----CCeEEEeecCCcchh-------HHHHHHHHhCCeEEEEEccccchHhhHHHhh
No 324
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.58 E-value=1.5e+02 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGS 53 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~ 53 (220)
|+|.++|.++....--+..+...|++.|.+.|+.+++=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 47888888777655555668889999999999988876554
No 325
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.57 E-value=1.4e+02 Score=25.36 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=11.3
Q ss_pred HHHHHHHHHCCCeEEEc
Q 027662 34 IELGKELVSRNIDLVYG 50 (220)
Q Consensus 34 ~~lG~~LA~~G~~lv~G 50 (220)
+.+++.|+++|+.|+.-
T Consensus 22 ~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 22 FGVARVLARAGADVILL 38 (263)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 45666777778776643
No 326
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.56 E-value=2.6e+02 Score=21.14 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHH---hcCC-eEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhh
Q 027662 33 AIELGKELVSRNIDLVYGGGSIGLMGLVSQAVH---DGGR-HVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKH 108 (220)
Q Consensus 33 A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~---~~GG-~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~ 108 (220)
.+++.+.+.+.....++|-| +-...+..+++ +.++ .+.++.. ..|..-...++..
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G--~s~~~a~e~~~kl~e~~~i~~~~~~~-------------------~e~~hg~~~~~~~ 61 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRG--PNYGTALEGALKLKETSYIHAEAYSA-------------------GEFKHGPIALVDE 61 (153)
T ss_pred HHHHHHHHhccCcEEEEcCC--CCHHHHHHHHHHHHHHHhhcceeccH-------------------HHhccChhhhccC
Confidence 35667777777777888876 34444444444 4432 3333311 1111112224555
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
.|.+|++-+.-.|-+++..++... ...+.|++++..
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~--~~~~~~vi~it~ 97 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEV--KARGAKVIVITD 97 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHH--HHcCCEEEEEec
Confidence 666666654446666666555432 234567777754
No 327
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.51 E-value=4.8e+02 Score=22.13 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE--EcCCCcChHHHHHHHHHhcC---CeEEEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV--YGGGSIGLMGLVSQAVHDGG---RHVIGV 74 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv--~GGg~~GlM~a~a~gA~~~G---G~viGi 74 (220)
+.|.|+=+. ++ +.|..+++.|.+.|+.++ |==.+ +-.++..+-..+.+ +..||.
T Consensus 14 ~vi~vir~~----~~---~~a~~~~~al~~~Gi~~iEit~~~~-~a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 14 GVVAVVRGE----SK---EEALKISLAVIKGGIKAIEVTYTNP-FASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred CEEEEEECC----CH---HHHHHHHHHHHHCCCCEEEEECCCc-cHHHHHHHHHHHcCCCCCeEEee
Confidence 468887221 22 566788888888888775 22233 65666655555543 356776
No 328
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=22.50 E-value=6.3e+02 Score=23.48 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeec--CCHHHH-HHHHHh--hCCeEEE-ecC
Q 027662 44 NIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAV--ADMHQR-KAEMAK--HSDAFIA-LPG 117 (220)
Q Consensus 44 G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~--~~m~~R-k~~m~~--~sDa~Vv-lpG 117 (220)
|..-+-+.|- |+.-+..+.....||. | .|++ |+--. .....+ -+++.. ..|++++ ++|
T Consensus 257 G~ig~i~nGa-Gl~m~t~D~i~~~gg~-----p---------aNPl-Dlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~g 320 (392)
T PRK14046 257 GDIGCIVNGA-GLAMATMDMIKLAGGE-----P---------ANFL-DVGGGASPERVAKAFRLVLSDRNVKAILVNIFA 320 (392)
T ss_pred CcEEEEeCCc-cHHHHHHHHHHhcCCC-----C---------cCCE-EecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCC
Confidence 3333344553 8877888888888865 2 2322 22111 111111 122222 3466554 467
Q ss_pred CCCcHHHHHHHHHHHHhC-CCCCcEEEEeCCC-cchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHhh
Q 027662 118 GYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEY 190 (220)
Q Consensus 118 G~GTL~El~~~~~~~qlg-~~~kPiill~~~g-~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 190 (220)
|+.-.+++.+.+.-..-. ..+||+++-. .| -.+...+. +.+.|. .++..+|.+|+++..-+.
T Consensus 321 gi~~~~~vA~~Ii~a~~~~~~~kPvvv~l-~G~~~e~~~~i---L~~~Gi-------pvf~~~~~~~a~~~~v~~ 384 (392)
T PRK14046 321 GINRCDWVAEGVVQAAREVGIDVPLVVRL-AGTNVEEGRKI---LAESGL-------PIITADTLAEAAEKAVEA 384 (392)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEc-CCCCHHHHHHH---HHHcCC-------CeeecCCHHHHHHHHHHH
Confidence 776667887766532211 1578995533 33 22222322 333332 378899999999988654
No 329
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.41 E-value=1.1e+02 Score=26.25 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=26.4
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCCeEEEEe
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVI 75 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~ 75 (220)
..+|||.|. |+=.+.+..-.++|.+||.+-
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 457899996 999999999999999999993
No 330
>PRK12367 short chain dehydrogenase; Provisional
Probab=22.41 E-value=1.3e+02 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=16.8
Q ss_pred CeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 45 IDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 45 ~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
..|||||+. |+=.++++...+.|..|+.+
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~ 44 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGL 44 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEE
Confidence 345666653 66566666666666665554
No 331
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.30 E-value=1.2e+02 Score=26.98 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHHHHHHHHHCCCeEEEc
Q 027662 33 AIELGKELVSRNIDLVYG 50 (220)
Q Consensus 33 A~~lG~~LA~~G~~lv~G 50 (220)
.+.+++.||++|..||..
T Consensus 23 G~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 23 GWGIAKALAEAGATILVG 40 (299)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 355666667777776663
No 332
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.26 E-value=64 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027662 10 SKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVY 49 (220)
Q Consensus 10 ~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 49 (220)
.+.++|.|+||+.. .. --+..++|.|+++|+.+..
T Consensus 23 ~~~~~v~il~G~Gn----NG-gDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN----NG-GDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH----HH-HHHHHHHHHHHHTTCEEEE
T ss_pred cCCCeEEEEECCCC----Ch-HHHHHHHHHHHHCCCeEEE
Confidence 44568888888753 12 2345677888888887654
No 333
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=22.13 E-value=2.4e+02 Score=21.47 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=19.7
Q ss_pred CeEEEecCCCCcHHHH---HHHHHHHH-hCCCCCcEEEEeC
Q 027662 110 DAFIALPGGYGTLEEL---LEVITWAQ-LGIHDKPVGLLNV 146 (220)
Q Consensus 110 Da~VvlpGG~GTL~El---~~~~~~~q-lg~~~kPiill~~ 146 (220)
|+ |++|||.+....+ -....|.+ ...+.|||..+-.
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~ 103 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGE 103 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCc
Confidence 54 6667887765421 12233333 2346899987643
No 334
>PRK06849 hypothetical protein; Provisional
Probab=22.12 E-value=5.2e+02 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGG 52 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 52 (220)
.|+|-|.|++.. .+..+++.|.+.|+.++....
T Consensus 4 ~~~VLI~G~~~~--------~~l~iar~l~~~G~~Vi~~d~ 36 (389)
T PRK06849 4 KKTVLITGARAP--------AALELARLFHNAGHTVILADS 36 (389)
T ss_pred CCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 467777754432 345566677777887765433
No 335
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=22.00 E-value=2.3e+02 Score=22.96 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=34.4
Q ss_pred CCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHhhcCCccccccccccccccc
Q 027662 137 HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQL 208 (220)
Q Consensus 137 ~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~~w~~~~~ 208 (220)
..+++.++..++|+.+. +.. ....|..+.. .. -|.+.+.+.|...........+.++|.....
T Consensus 26 ~~~~~~~i~~Ddf~~~~--~~~-~~~~g~~d~~---~~---~d~~~l~~~l~~l~~~~~~~~p~yd~~~~~~ 88 (179)
T cd02028 26 NGIGPVVISLDDYYVPR--KTP-RDEDGNYDFE---SI---LDLDLLNKNLHDLLNGKEVELPIYDFRTGKR 88 (179)
T ss_pred cCCCEEEEehhhcccCc--ccc-cccCCCCCCC---cc---ccHHHHHHHHHHHHCCCeeecccceeECCcc
Confidence 35678888888888655 111 1112322211 11 3667777777765554444556677775543
No 336
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.99 E-value=2.3e+02 Score=24.86 Aligned_cols=42 Identities=29% Similarity=0.505 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHH-----HHHHHHHHcCC
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL-----SFIDKAVEEGF 165 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~-----~~l~~~~~~g~ 165 (220)
|++++++.+.-.+-...+.|++++ +||+++. +|++.+.+-|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 456666655322212346798877 3777644 47777776664
No 337
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.97 E-value=2.5e+02 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=18.0
Q ss_pred CCeEEEcCCCcChHHHHHHHHHhcCC-eEEEEe
Q 027662 44 NIDLVYGGGSIGLMGLVSQAVHDGGR-HVIGVI 75 (220)
Q Consensus 44 G~~lv~GGg~~GlM~a~a~gA~~~GG-~viGi~ 75 (220)
...+|+|+|..|+| +..-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~--aiqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCL--IVAAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCcEEEEEe
Confidence 35677877655554 3455666776 466663
No 338
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.89 E-value=4.8e+02 Score=23.24 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=41.7
Q ss_pred cceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHH--HHHHHhcCCeEEEEeCCcc
Q 027662 12 FKRICVFCGSSQGK---KSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLV--SQAVHDGGRHVIGVIPKTL 79 (220)
Q Consensus 12 ~~~I~V~ggS~~~~---~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~--a~gA~~~GG~viGi~P~~~ 79 (220)
..-|.|.|++.... .++..+..+...+. ++....|+.|-|..+.-+++ ++-|.+.|-.-+-++|..+
T Consensus 43 v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 43 VDGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred CCEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 34566666555542 34554444444443 34457888888765787666 4667788888777876654
No 339
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.85 E-value=61 Score=28.60 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=57.8
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCC
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGET 88 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~ 88 (220)
..+.-++=|++..... -|+-. ...+-.+.|.+.||.|+-=-.+ .=.+|+.-.+.|-.. |+|-.. | ...+
T Consensus 90 ~t~wIKLEVi~D~~~L-~PD~~-etl~Aae~Lv~eGF~VlPY~~~---D~v~akrL~d~Gcaa--vMPlgs-P--IGSg- 158 (247)
T PF05690_consen 90 GTNWIKLEVIGDDKTL-LPDPI-ETLKAAEILVKEGFVVLPYCTD---DPVLAKRLEDAGCAA--VMPLGS-P--IGSG- 158 (247)
T ss_dssp S-SEEEE--BS-TTT---B-HH-HHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SE--BEEBSS-S--TTT--
T ss_pred CCCeEEEEEeCCCCCc-CCChh-HHHHHHHHHHHCCCEEeecCCC---CHHHHHHHHHCCCCE--EEeccc-c--cccC-
Confidence 3344456666554432 23332 3355677888889987732222 344577777777653 333211 1 0111
Q ss_pred CceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 89 VGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 89 ~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
.=+ .+ ..--+++.+.++.-|++-+|+||.++..+++.+. -=-+|+|+
T Consensus 159 ---~Gi-~n-~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG------~daVLvNT 205 (247)
T PF05690_consen 159 ---RGI-QN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG------ADAVLVNT 205 (247)
T ss_dssp -----S-ST-HHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-------SEEEESH
T ss_pred ---cCC-CC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC------Cceeehhh
Confidence 000 01 2334567788899999999999999999998653 23366664
No 340
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.82 E-value=1.2e+02 Score=25.84 Aligned_cols=46 Identities=7% Similarity=0.006 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 027662 99 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 148 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 148 (220)
.++....++.+|.+|+++ |--.+.-++.+.+...++.|++++|.+.
T Consensus 162 ~~~~~~~~~~~DlllviG----TSl~v~p~~~l~~~~~~~~~~i~iN~~~ 207 (225)
T cd01411 162 IEEAIQAIEKADLLVIVG----TSFVVYPFAGLIDYRQAGANLIAINKEP 207 (225)
T ss_pred HHHHHHHHhcCCEEEEEC----cCCeehhHHHHHHHHhCCCeEEEECCCC
Confidence 355666778899777733 4334433333333223578999999763
No 341
>PF14953 DUF4504: Domain of unknown function (DUF4504)
Probab=21.80 E-value=2e+02 Score=25.52 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCc-chHHHHHHHHH-----HHcCCCCcccc-----ccEEEcCCHHHHHHHHHhhcC
Q 027662 138 DKPVGLLNVDGY-YNSLLSFIDKA-----VEEGFISPSAR-----QIIVSAPTVKELVKKLEEYVP 192 (220)
Q Consensus 138 ~kPiill~~~g~-w~~l~~~l~~~-----~~~g~i~~~~~-----~~i~~~~~~ee~~~~l~~~~~ 192 (220)
-||.++++.++. +..+.+++..+ -+.+++..... +.++ .=+++.+++++++...
T Consensus 32 LRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~L~vl~I~~~~~-lvn~~~~~~~le~~l~ 96 (270)
T PF14953_consen 32 LRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQNLRVLVIDDNIL-LVNPKELLEHLESSLR 96 (270)
T ss_pred CccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccceEEEEEcCcEE-EEeHHHHHHHHHHHhc
Confidence 399999998888 88888888877 45554443322 2233 3368888888877443
No 342
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.73 E-value=4.8e+02 Score=23.27 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=36.0
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchH-----HHHHHHHHHHcCCCCccccccEEEcCCHHHHHHHHHh
Q 027662 116 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-----LLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEE 189 (220)
Q Consensus 116 pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~-----l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 189 (220)
-+|. |++..++.+.-..-.-.+.|++|+. ||++ +.+|++.+.+.|. +-+.+.|=|.|--+.+.+
T Consensus 73 ~~g~-t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 73 AAGV-TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELLK 141 (265)
T ss_pred HCCC-CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHHH
Confidence 3444 5566666553222112357999984 6665 5557777766653 346666666555554443
No 343
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.73 E-value=2.3e+02 Score=26.33 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEcCCC---cChHHHHHHHHHhcCC-eEEEEeCC
Q 027662 23 QGKKSSYQDAAIELGKELVSRNIDLVYGGGS---IGLMGLVSQAVHDGGR-HVIGVIPK 77 (220)
Q Consensus 23 ~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~---~GlM~a~a~gA~~~GG-~viGi~P~ 77 (220)
.+-.+.+.+.-+.+-..++++|+.||+++|. .|+.+++.+-|.+.|= .-|+++-.
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~g 108 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYG 108 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEEC
Confidence 3446777778888888899999999998773 2233444444555553 34666543
No 344
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.66 E-value=1.4e+02 Score=24.65 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
++|.|.|+++. ....+.+.|+++|+.++...
T Consensus 3 ~~vlVtGasg~--------iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSG--------FGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEe
Confidence 46888866642 34566777788898887544
No 345
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=21.59 E-value=1.1e+02 Score=26.19 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.9
Q ss_pred EEEecCCCCcH
Q 027662 112 FIALPGGYGTL 122 (220)
Q Consensus 112 ~VvlpGG~GTL 122 (220)
.|++|||.|..
T Consensus 85 alviPGG~~~~ 95 (213)
T cd03133 85 ALIFPGGFGAA 95 (213)
T ss_pred EEEECCCCchh
Confidence 66899999874
No 346
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.58 E-value=1e+02 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=24.9
Q ss_pred HHHHHhhCCeEEEecCCCCcHHHHHHHHHH
Q 027662 102 KAEMAKHSDAFIALPGGYGTLEELLEVITW 131 (220)
Q Consensus 102 k~~m~~~sDa~VvlpGG~GTL~El~~~~~~ 131 (220)
-+++.+.++.-|++.+|+||-+....++.+
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 456778889999999999999999888754
No 347
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.56 E-value=3e+02 Score=25.33 Aligned_cols=43 Identities=33% Similarity=0.329 Sum_probs=27.1
Q ss_pred hhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchH
Q 027662 107 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 152 (220)
Q Consensus 107 ~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 152 (220)
..=|.+|+.+|+.||..=+..-+ .+++ ++.+||-++..+-=+.
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~--~~~~-~~~~ViG~~v~~~~~~ 221 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGL--AQLG-PDVEVIGIDVSADPEK 221 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHh--hhcc-CCCceEEEeecCCHHH
Confidence 34588999999999987665433 3333 3567766665543333
No 348
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.44 E-value=6.6e+02 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=17.0
Q ss_pred CeEEEecCCCCcHHHHHHHH
Q 027662 110 DAFIALPGGYGTLEELLEVI 129 (220)
Q Consensus 110 Da~VvlpGG~GTL~El~~~~ 129 (220)
+..+||-||+|+-+|-+.-.
T Consensus 242 ~~pLVlHGgSG~~~e~~~~a 261 (340)
T cd00453 242 SLNFVFHGGSGSTAQEIKDS 261 (340)
T ss_pred CCceEEeCCCCCCHHHHHHH
Confidence 78899999999998887543
No 349
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=21.44 E-value=2.3e+02 Score=26.02 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=11.2
Q ss_pred hhCCeEEEecCCC
Q 027662 107 KHSDAFIALPGGY 119 (220)
Q Consensus 107 ~~sDa~VvlpGG~ 119 (220)
..+|++|+++||.
T Consensus 78 ~~~D~IIaiGGGS 90 (386)
T cd08191 78 AGPDVIIGLGGGS 90 (386)
T ss_pred cCCCEEEEeCCch
Confidence 5789999999984
No 350
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.44 E-value=4.4e+02 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=23.2
Q ss_pred cccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 10 SKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 10 ~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
..+++|.|.|+++. ....+.+.|+++|+.|+...
T Consensus 8 ~~~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~ 41 (274)
T PRK07775 8 PDRRPALVAGASSG--------IGAATAIELAAAGFPVALGA 41 (274)
T ss_pred CCCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 34568888876542 34667788888999876443
No 351
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.37 E-value=2.3e+02 Score=23.32 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=18.9
Q ss_pred ccceEEEEcCCCCCCChHHHHHHHHHHHHHHH-CCCeEE
Q 027662 11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVS-RNIDLV 48 (220)
Q Consensus 11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~-~G~~lv 48 (220)
+++.|+|. |...+..... .|..|+..||+ .|..++
T Consensus 34 ~~~vi~v~-s~kgG~GkSt--~a~nLA~~la~~~g~~VL 69 (207)
T TIGR03018 34 NNNLIMVT-SSLPGEGKSF--TAINLAISLAQEYDKTVL 69 (207)
T ss_pred CCeEEEEE-CCCCCCCHHH--HHHHHHHHHHHhcCCeEE
Confidence 34456665 3333433332 46677777775 466543
No 352
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.37 E-value=3.8e+02 Score=23.47 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=13.5
Q ss_pred EEcCCHHHHHHHHHhhc
Q 027662 175 VSAPTVKELVKKLEEYV 191 (220)
Q Consensus 175 ~~~~~~ee~~~~l~~~~ 191 (220)
..++|++|+++++++..
T Consensus 239 ~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 239 AIFDDISQLNQFVARLL 255 (256)
T ss_pred ccCCCHHHHHHHHHHhc
Confidence 45689999999998754
No 353
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=21.24 E-value=5e+02 Score=22.76 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCC
Q 027662 102 KAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179 (220)
Q Consensus 102 k~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 179 (220)
...++..||++|..+ -|+|.. +.|+++ .++||+..+..|. ..++ ..+ . .-+.+..|
T Consensus 293 ~~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~~-~e~i-------~~~-----~-~g~~~~~~ 350 (392)
T cd03805 293 KELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGGP-LETV-------VDG-----E-TGFLCEPT 350 (392)
T ss_pred HHHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCCc-HHHh-------ccC-----C-ceEEeCCC
Confidence 345678899887643 334442 456664 4699999876543 2221 111 1 22334568
Q ss_pred HHHHHHHHHhhcC
Q 027662 180 VKELVKKLEEYVP 192 (220)
Q Consensus 180 ~ee~~~~l~~~~~ 192 (220)
++++.+.|.+...
T Consensus 351 ~~~~a~~i~~l~~ 363 (392)
T cd03805 351 PEEFAEAMLKLAN 363 (392)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888876543
No 354
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.20 E-value=5.6e+02 Score=22.34 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=41.6
Q ss_pred cceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHH--HHHHHhcCCeEEEEeCCccc
Q 027662 12 FKRICVFCGSSQGK---KSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLV--SQAVHDGGRHVIGVIPKTLM 80 (220)
Q Consensus 12 ~~~I~V~ggS~~~~---~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~--a~gA~~~GG~viGi~P~~~~ 80 (220)
..-|.|.|++.... .++..+..+.+.+. ++....|+.|-|....-+++ ++.|.++|-..+-++|....
T Consensus 36 v~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~ 108 (292)
T PRK03170 36 TDGLVVVGTTGESPTLTHEEHEELIRAVVEA-VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYN 108 (292)
T ss_pred CCEEEECCcCCccccCCHHHHHHHHHHHHHH-hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 44566665555442 34555454444444 34457788887754665554 57788889888888776543
No 355
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.19 E-value=1.3e+02 Score=23.66 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
+.|+|.|.+..+.+ -.++.|.+.|.++|+.+.
T Consensus 1 pvv~VvG~~~sGKT----Tl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKT----TLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHH----HHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHH----HHHHHHHHHHhHcCCceE
Confidence 46888877766522 356778888888888765
No 356
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=21.15 E-value=64 Score=30.27 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=14.4
Q ss_pred eEEEcCCCcChHHHHHHHHHhcCCeEEE
Q 027662 46 DLVYGGGSIGLMGLVSQAVHDGGRHVIG 73 (220)
Q Consensus 46 ~lv~GGg~~GlM~a~a~gA~~~GG~viG 73 (220)
.+|-|||+.|+|.|..- .+.|-+|+=
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~v 28 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVLV 28 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EEE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEEE
Confidence 36779999999977654 344444433
No 357
>PRK13057 putative lipid kinase; Reviewed
Probab=21.09 E-value=86 Score=27.42 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=22.5
Q ss_pred hCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 027662 108 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 145 (220)
Q Consensus 108 ~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 145 (220)
..| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5667899999999987652 1356777773
No 358
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.08 E-value=1.5e+02 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
+++.|.|+++. ....+.+.|+++|+.++.-
T Consensus 6 ~~~lItG~~g~--------iG~~~a~~l~~~G~~vi~~ 35 (253)
T PRK08217 6 KVIVITGGAQG--------LGRAMAEYLAQKGAKLALI 35 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEE
Confidence 35666655432 2344556666677765543
No 359
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=20.92 E-value=1.9e+02 Score=24.21 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
|+|+|+||+. ..+..|++.|+++|+.|+...
T Consensus 1 MkI~IIGG~G--------~mG~ala~~L~~~G~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTG--------DQGKGLALRLAKAGNKIIIGS 31 (219)
T ss_pred CEEEEEcCCC--------HHHHHHHHHHHhCCCEEEEEE
Confidence 4799996543 245678888999999877553
No 360
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.92 E-value=4.1e+02 Score=22.95 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=38.3
Q ss_pred HHHHhhCCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccccEEEcCCH
Q 027662 103 AEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTV 180 (220)
Q Consensus 103 ~~m~~~sDa~Vvlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 180 (220)
.-++..||++|.-. .|+|.- +.|++. .++|+|..+..+. ..+. .+| ....++-.+|+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~~-~e~i-------~~~-----~~G~~~~~~~~ 323 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGGI-PEVV-------KHG-----ETGFLVDVGDV 323 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCCc-hhhh-------cCC-----CceEEcCCCCH
Confidence 35677899877542 344432 556554 4699999876543 2211 111 12223334578
Q ss_pred HHHHHHHHhhc
Q 027662 181 KELVKKLEEYV 191 (220)
Q Consensus 181 ee~~~~l~~~~ 191 (220)
+++.+.+.+..
T Consensus 324 ~~l~~~i~~l~ 334 (371)
T cd04962 324 EAMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 361
>PLN02448 UDP-glycosyltransferase family protein
Probab=20.89 E-value=7.1e+02 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=23.1
Q ss_pred HHhhCCe-EEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 027662 105 MAKHSDA-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 145 (220)
Q Consensus 105 m~~~sDa-~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 145 (220)
++.+.++ ..+--||.||..|-.. ++.|++.+-
T Consensus 336 iL~h~~v~~fvtHgG~nS~~eal~---------~GvP~l~~P 368 (459)
T PLN02448 336 VLCHSSVGGFWTHCGWNSTLEAVF---------AGVPMLTFP 368 (459)
T ss_pred HhccCccceEEecCchhHHHHHHH---------cCCCEEecc
Confidence 4555554 5777899999877642 689999874
No 362
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=20.83 E-value=6.4e+02 Score=23.26 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHH--CCCe--EE---EcCCC-cChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCH
Q 027662 27 SSYQDAAIELGKELVS--RNID--LV---YGGGS-IGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADM 98 (220)
Q Consensus 27 ~~~~~~A~~lG~~LA~--~G~~--lv---~GGg~-~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m 98 (220)
....+.|++--..+.+ .|.. .| .|||. +|.--.+++.|++.|-.|++|.-- |.....+ .....-
T Consensus 76 ~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~---Pf~~EG~-----~r~~~A 147 (338)
T COG0206 76 EVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTL---PFSFEGS-----PRMENA 147 (338)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEe---cchhcCc-----hHHHHH
Confidence 4555566655555554 3443 33 24443 355667899999999999998421 1111111 011122
Q ss_pred HHHHHHHHhhCCeEEEecC
Q 027662 99 HQRKAEMAKHSDAFIALPG 117 (220)
Q Consensus 99 ~~Rk~~m~~~sDa~VvlpG 117 (220)
......|.+.+|-+|++|-
T Consensus 148 ~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 148 EEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HHHHHHHHHhCCcEEEEec
Confidence 4667778889999999984
No 363
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.83 E-value=1.5e+02 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLV 48 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv 48 (220)
+++|+|++|......+.-...|+++.+.|-+.||.++
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 3466666655544455555677777777777777765
No 364
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=20.81 E-value=98 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
++.|+.+|..++.. +.|+.+++.|.. |+.+
T Consensus 2 kilIvY~S~~G~T~---~iA~~Ia~~l~~-g~~v 31 (177)
T PRK11104 2 KTLILYSSRDGQTR---KIASYIASELKE-GIQC 31 (177)
T ss_pred cEEEEEECCCChHH---HHHHHHHHHhCC-CCeE
Confidence 56666688877554 456777777765 6543
No 365
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=20.80 E-value=5.8e+02 Score=22.81 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=43.6
Q ss_pred HHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCceeee-----------cCCHHHHHHH
Q 027662 36 LGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKA-----------VADMHQRKAE 104 (220)
Q Consensus 36 lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~-----------~~~m~~Rk~~ 104 (220)
.-+.+.+.+..+|.-++ |......+..++.|..++..+++....+....-..+.+++ ..++. =...
T Consensus 79 ~~~~~~~~~v~~v~~~~--g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~-ll~~ 155 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGA--GNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMA-LVPQ 155 (307)
T ss_pred HHHHHHhCCCCEEEEcC--CCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHH-HHHH
Confidence 33444456666554322 4455566667777777776655432111110111111111 01111 0111
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHH
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVIT 130 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~ 130 (220)
+.+..+.-|+.-||+++-..+..++.
T Consensus 156 v~~~~~iPviaaGGI~~~~~~~~al~ 181 (307)
T TIGR03151 156 VVDAVSIPVIAAGGIADGRGMAAAFA 181 (307)
T ss_pred HHHHhCCCEEEECCCCCHHHHHHHHH
Confidence 22334566777788888777776664
No 366
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=20.75 E-value=1.3e+02 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELV 41 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA 41 (220)
|+|+|||||=++...-+...|++..+.+.
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 47999999987766666667776666554
No 367
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=20.75 E-value=96 Score=22.33 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=28.6
Q ss_pred CCCCCcEEEEeCCCcchHHHHHHHHH-HHcCCCCccccccEEEcC----CHHHHHHHHHhh
Q 027662 135 GIHDKPVGLLNVDGYYNSLLSFIDKA-VEEGFISPSARQIIVSAP----TVKELVKKLEEY 190 (220)
Q Consensus 135 g~~~kPiill~~~g~w~~l~~~l~~~-~~~g~i~~~~~~~i~~~~----~~ee~~~~l~~~ 190 (220)
+.+-+|++.++.+|.++.+.+-++.. .....+ .|.+-. +.+++.+.|++.
T Consensus 13 a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLv------KVk~~~~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 13 AHHLKPVVQIGKNGLTDGVIEEIDDALEKHELV------KVKVLGNCREDRKEIAEQLAEK 67 (84)
T ss_dssp HTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEE------EEEETT--HHHHHHHHHHHHHH
T ss_pred hcCCCCeEEECCCCCCHHHHHHHHHHHHhCCee------EEEEccCCHHHHHHHHHHHHHH
Confidence 34569999999999999999877654 333333 344433 445566666554
No 368
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=20.66 E-value=2e+02 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=19.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
|+.++|.|.|..+... ..++|-+.|.++|+.+
T Consensus 2 ~~Il~ivG~k~SGKTT----Lie~lv~~L~~~G~rV 33 (161)
T COG1763 2 MKILGIVGYKNSGKTT----LIEKLVRKLKARGYRV 33 (161)
T ss_pred CcEEEEEecCCCChhh----HHHHHHHHHHhCCcEE
Confidence 5567777666665332 3456666677777654
No 369
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=20.61 E-value=2.3e+02 Score=21.97 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027662 14 RICVFCGSSQGKKSSYQDAAIELGKELVSRNIDL 47 (220)
Q Consensus 14 ~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~l 47 (220)
+++|.--+.+ ........|.++++.+++.||.+
T Consensus 2 ~~~iv~~~~P-y~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGPA-YGTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCCC-CCCHHHHHHHHHHHHHHhCCCCe
Confidence 4555544443 34556678999999999999974
No 370
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=20.59 E-value=1.6e+02 Score=27.51 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=27.7
Q ss_pred hhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027662 107 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 146 (220)
Q Consensus 107 ~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 146 (220)
+..|++|++.| .-||+|....+.+.- .- .|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~-~t-~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTI-NT-LKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHH-hc-CCcEEEecc
Confidence 35789999875 789999998887642 22 399998753
No 371
>PRK00170 azoreductase; Reviewed
Probab=20.58 E-value=2.5e+02 Score=22.73 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSR--NIDL 47 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~--G~~l 47 (220)
||+|.|+.||-+.+...-...++.+-+.+.++ |+.+
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v 38 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEV 38 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeE
Confidence 45666665665443133335666666666665 5543
No 372
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.58 E-value=1.8e+02 Score=25.76 Aligned_cols=40 Identities=30% Similarity=0.611 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHH-HHHHHHc
Q 027662 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVEE 163 (220)
Q Consensus 121 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~-l~~~~~~ 163 (220)
|++.+++.+.-.+-...+.|++++. ||+++..+ ++.+.++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHH
No 373
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.51 E-value=1.4e+02 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGG 51 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 51 (220)
+++.|.|+|+ + ..+.+++.|++.|+.|+.-+
T Consensus 9 k~~lITGgs~-G-------IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATR-G-------AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEEe
Confidence 4666776554 2 23556677778888876543
No 374
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.50 E-value=1.5e+02 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=18.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
+++.|.|+|+. ..+++++.|+++|+.|+.-
T Consensus 9 k~~lItGas~g--------iG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 9 RVAVVTGGSSG--------IGLATVELLLEAGASVAIC 38 (265)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCeEEEE
Confidence 45666655531 3355666777778876643
No 375
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=20.49 E-value=1.8e+02 Score=24.41 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=21.7
Q ss_pred hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027662 9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVY 49 (220)
Q Consensus 9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 49 (220)
.-++++|.|+|+|+. ..+.+.+.|.++|+.|+.
T Consensus 14 ~~~~~~ilItGasG~--------iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 14 NVKTKTVFVAGATGR--------TGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred cccCCeEEEECCCcH--------HHHHHHHHHHhCCCEEEE
Confidence 344678888876642 345566677778888653
No 376
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.49 E-value=1.5e+02 Score=24.78 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
+++-|.|+|+ + ..+.+++.|+++|+.|+.-
T Consensus 9 k~~lItGas~-g-------IG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGCNT-G-------LGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEe
Confidence 4666775553 2 3456777788888888743
No 377
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=20.46 E-value=4.4e+02 Score=20.84 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=50.7
Q ss_pred HHHHHhcCCeEEEEeCCcccCCCCCCCCCceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCc
Q 027662 61 SQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKP 140 (220)
Q Consensus 61 a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kP 140 (220)
.-++.+.||.++.+-|.... + -...++..=-+.|-..+|++|+=.-.-+++.|+.+. ...|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~--------~---~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~--------~~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSS--------L---GKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEH--------SSVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSS--------T---TTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHH--------CSSE
T ss_pred HHhhhcceeEEEEECccccc--------C---cCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHh--------ccCC
Confidence 44677889999999654321 1 112344333346777899999998889999988753 2578
Q ss_pred EEEEeCCCcchHHHHHHHH
Q 027662 141 VGLLNVDGYYNSLLSFIDK 159 (220)
Q Consensus 141 iill~~~g~w~~l~~~l~~ 159 (220)
||=... ..+-|...+++-
T Consensus 119 VINa~~-~~~HPtQaL~Dl 136 (142)
T PF02729_consen 119 VINAGD-DHEHPTQALADL 136 (142)
T ss_dssp EEEEEE-SSBSHHHHHHHH
T ss_pred eEcCcC-CCCChHHHHHHH
Confidence 874333 455666555543
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.46 E-value=1.2e+02 Score=25.01 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=6.1
Q ss_pred HhhCCeEEEec
Q 027662 106 AKHSDAFIALP 116 (220)
Q Consensus 106 ~~~sDa~Vvlp 116 (220)
+..||++++..
T Consensus 74 i~~adv~~I~V 84 (185)
T PF03721_consen 74 IKDADVVFICV 84 (185)
T ss_dssp HHH-SEEEE--
T ss_pred hhccceEEEec
Confidence 67799877664
No 379
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=20.42 E-value=3.8e+02 Score=22.18 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHhhCCeEEEecCCCCcHHHHHHHHHHHH-hCCCCCcEEEEeCCCcc----h--HHHHHHHH-HHHcCCCCccccccEE-
Q 027662 105 MAKHSDAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYY----N--SLLSFIDK-AVEEGFISPSARQIIV- 175 (220)
Q Consensus 105 m~~~sDa~VvlpGG~GTL~El~~~~~~~q-lg~~~kPiill~~~g~w----~--~l~~~l~~-~~~~g~i~~~~~~~i~- 175 (220)
+-+...+.|+|+||. |...+++.+.-.. ....-+.|.+++.+.+| + .-..+++. +.+..-|++.....+.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 356688999999995 4456776665332 12222668888887777 1 12233322 2322223322222222
Q ss_pred EcCCHHHHHHHHHhhc
Q 027662 176 SAPTVKELVKKLEEYV 191 (220)
Q Consensus 176 ~~~~~ee~~~~l~~~~ 191 (220)
-.+++++..+..++..
T Consensus 96 ~~~~~~~~~~~y~~~l 111 (199)
T PF01182_consen 96 EADDPEEAAERYEQEL 111 (199)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 1456777777766544
No 380
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.42 E-value=2.9e+02 Score=24.00 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=21.7
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHHHhCCCCC-cEEEEeC
Q 027662 109 SDAFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLLNV 146 (220)
Q Consensus 109 sDa~VvlpGG~GTL~El~~~~~~~qlg~~~k-Piill~~ 146 (220)
.| +|+.-||=||+.|+...+. +...+ |+.++..
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~----~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALI----QLDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHh----cCCCCCcEEEEcC
Confidence 45 5667899999999987652 11233 6666653
No 381
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=20.40 E-value=2.3e+02 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCcchHHHHHHHHHHHc
Q 027662 138 DKPVGLLNVDGYYNSLLSFIDKAVEE 163 (220)
Q Consensus 138 ~kPiill~~~g~w~~l~~~l~~~~~~ 163 (220)
.+|++++..+---.|++.+++.+...
T Consensus 109 ~~~~vlIAgGtGIaP~~s~l~~~~~~ 134 (245)
T cd06200 109 GRPLILIGNGTGLAGLRSHLRARARA 134 (245)
T ss_pred CCCEEEEecCcChHHHHHHHHHHHhc
Confidence 35666665443446666666655443
No 382
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.38 E-value=3.9e+02 Score=24.62 Aligned_cols=58 Identities=21% Similarity=0.068 Sum_probs=34.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVI 72 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~vi 72 (220)
.++|+|+++++..+... ..++|=+.+.+.|+.|+.=+-+..-+-..+..++.....+|
T Consensus 159 ak~Igv~Y~p~E~ns~~---l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i 216 (322)
T COG2984 159 AKSIGVLYNPGEANSVS---LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVI 216 (322)
T ss_pred CeeEEEEeCCCCcccHH---HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEE
Confidence 46788888877654432 44666666677888888766544444444444444333433
No 383
>PRK08589 short chain dehydrogenase; Validated
Probab=20.36 E-value=1.5e+02 Score=25.21 Aligned_cols=54 Identities=7% Similarity=-0.030 Sum_probs=30.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEE
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGV 74 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi 74 (220)
.+++.|.|+++. ..+.+++.|+++|+.|+.-+-+ .--+.......+.++++..+
T Consensus 6 ~k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 6 NKVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 356777766542 3466778888899988765432 11122223333445565555
No 384
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=20.15 E-value=2.3e+02 Score=24.12 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH----CCCeEE---EcCCC---cChHHHHHHHHHhcC
Q 027662 31 DAAIELGKELVS----RNIDLV---YGGGS---IGLMGLVSQAVHDGG 68 (220)
Q Consensus 31 ~~A~~lG~~LA~----~G~~lv---~GGg~---~GlM~a~a~gA~~~G 68 (220)
..|+.+|.+||+ .|+.-| -||-. +|-..|+++||.++|
T Consensus 80 ~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~G 127 (193)
T PRK08569 80 PAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAG 127 (193)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcC
Confidence 578888888886 454332 24332 278999999999987
No 385
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.14 E-value=1.7e+02 Score=23.95 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027662 12 FKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYG 50 (220)
Q Consensus 12 ~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 50 (220)
|++|.|.|+++. ....+.+.|+++|+.|+.-
T Consensus 1 ~k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~ 31 (225)
T PRK08177 1 KRTALIIGASRG--------LGLGLVDRLLERGWQVTAT 31 (225)
T ss_pred CCEEEEeCCCch--------HHHHHHHHHHhCCCEEEEE
Confidence 356777766532 3455677777788877643
No 386
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=20.11 E-value=63 Score=30.44 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cChHHHHHHHHHhcCCeEEE
Q 027662 31 DAAIELGKELVSRNIDLVYGGGS----------IGLMGLVSQAVHDGGRHVIG 73 (220)
Q Consensus 31 ~~A~~lG~~LA~~G~~lv~GGg~----------~GlM~a~a~gA~~~GG~viG 73 (220)
+-|+.|++.|.++|+.|++||-. .|+-+..+..+++.-|.++-
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 45777888888999999987532 25555556667766665554
No 387
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=20.08 E-value=89 Score=23.07 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=30.4
Q ss_pred eCCCcchHHHHHHHHHHHcCCCCccccccEEEc-----CCHHHHHHHHHhhcCC
Q 027662 145 NVDGYYNSLLSFIDKAVEEGFISPSARQIIVSA-----PTVKELVKKLEEYVPC 193 (220)
Q Consensus 145 ~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~-----~~~ee~~~~l~~~~~~ 193 (220)
..+.+.+.++..+..+++ .++-.++|+.- ++|+.+++.++++...
T Consensus 28 ~~ee~~d~lv~hF~~ite----HP~gSDLIfYP~~~~edsPegIv~~vKeWRa~ 77 (85)
T PF01320_consen 28 KTEEEHDELVDHFEKITE----HPDGSDLIFYPEDGREDSPEGIVKEVKEWRAS 77 (85)
T ss_dssp SSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC----CCCCCceeeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 345577888887776654 34455666654 5899999999998654
Done!