Your job contains 1 sequence.
>027663
MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR
NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPS
DAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTK
EFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027663
(220 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018422 - symbol:BBD1 "AT1G75380" species:3702... 1000 7.9e-101 1
TAIR|locus:2013164 - symbol:BBD2 "bifunctional nuclease i... 967 2.5e-97 1
TAIR|locus:2156842 - symbol:AT5G66050 species:3702 "Arabi... 288 2.2e-25 1
UNIPROTKB|Q50604 - symbol:MT1877 "Uncharacterized protein... 113 1.5e-05 1
>TAIR|locus:2018422 [details] [associations]
symbol:BBD1 "AT1G75380" species:3702 "Arabidopsis
thaliana" [GO:0004518 "nuclease activity" evidence=IDA] [GO:0050832
"defense response to fungus" evidence=IMP] [GO:0031063 "regulation
of histone deacetylation" evidence=IGI] [GO:0043565
"sequence-specific DNA binding" evidence=IDA;IPI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001943 InterPro:IPR003729 Pfam:PF02151 Pfam:PF02577
PROSITE:PS50151 PROSITE:PS51658 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0050832 GO:GO:0004518
EMBL:AC023754 EMBL:AY054232 EMBL:AY066045 EMBL:AY087417
IPI:IPI00543627 PIR:C96784 RefSeq:NP_177671.1 RefSeq:NP_849890.1
RefSeq:NP_849891.1 UniGene:At.23222 ProteinModelPortal:Q9FWS6
SMR:Q9FWS6 STRING:Q9FWS6 EnsemblPlants:AT1G75380.1
EnsemblPlants:AT1G75380.2 EnsemblPlants:AT1G75380.3 GeneID:843874
KEGG:ath:AT1G75380 TAIR:At1g75380 eggNOG:COG1259
HOGENOM:HOG000029667 InParanoid:Q9FWS6 OMA:LQGPVIC PhylomeDB:Q9FWS6
ProtClustDB:CLSN2682514 Genevestigator:Q9FWS6 SUPFAM:SSF103256
Uniprot:Q9FWS6
Length = 325
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 188/220 (85%), Positives = 206/220 (93%)
Query: 1 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR 60
M+KMRDGR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM
Sbjct: 106 MVKMRDGRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMT 165
Query: 61 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPS 120
NVQIARPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPS
Sbjct: 166 NVQIARPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPS 225
Query: 121 DAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTK 180
DAINIAVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTK
Sbjct: 226 DAINIAVRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTK 285
Query: 181 EFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 220
EFN++ M+ A EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 286 EFNILSKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325
>TAIR|locus:2013164 [details] [associations]
symbol:BBD2 "bifunctional nuclease in basal defense
response 2" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0009611 "response to wounding" evidence=ISS]
InterPro:IPR001943 InterPro:IPR003729 Pfam:PF02151 Pfam:PF02577
PROSITE:PS50151 PROSITE:PS51658 EMBL:CP002684 GO:GO:0005634
GO:GO:0090305 GO:GO:0004518 HOGENOM:HOG000029667
ProtClustDB:CLSN2682514 SUPFAM:SSF103256 EMBL:AC024609
EMBL:AY035016 EMBL:AY059082 EMBL:AK317508 EMBL:AY088015
IPI:IPI00546371 IPI:IPI00547716 PIR:D86329 RefSeq:NP_001031068.1
RefSeq:NP_564093.1 UniGene:At.16184 ProteinModelPortal:Q93VH2
SMR:Q93VH2 STRING:Q93VH2 EnsemblPlants:AT1G19660.1
EnsemblPlants:AT1G19660.2 GeneID:838553 KEGG:ath:AT1G19660
TAIR:At1g19660 InParanoid:Q93VH2 OMA:TRVHEAY PhylomeDB:Q93VH2
Genevestigator:Q93VH2 Uniprot:Q93VH2
Length = 329
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 181/220 (82%), Positives = 206/220 (93%)
Query: 1 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR 60
M+KM+DGR LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM
Sbjct: 110 MVKMKDGRQLRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMT 169
Query: 61 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPS 120
NVQIARPT+YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPS
Sbjct: 170 NVQIARPTMYQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPS 229
Query: 121 DAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTK 180
DAINIAVRCKVPIQVNKYLAYSDGMRVI+SGKLS +P SDGLLFTELD+P+GQPC DTK
Sbjct: 230 DAINIAVRCKVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTK 289
Query: 181 EFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 220
EF+LVRNM+ A EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 290 EFDLVRNMMQAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329
>TAIR|locus:2156842 [details] [associations]
symbol:AT5G66050 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR001943 InterPro:IPR003729 Pfam:PF02151 Pfam:PF02577
EMBL:CP002688 GenomeReviews:BA000015_GR SUPFAM:SSF103256 KO:K08999
EMBL:BT006066 EMBL:AK118771 IPI:IPI00525695 RefSeq:NP_201406.2
UniGene:At.28884 ProteinModelPortal:Q8GWL4 SMR:Q8GWL4 PaxDb:Q8GWL4
PRIDE:Q8GWL4 EnsemblPlants:AT5G66050.1 GeneID:836735
KEGG:ath:AT5G66050 TAIR:At5g66050 eggNOG:NOG292889
HOGENOM:HOG000131624 InParanoid:Q8GWL4 OMA:VGEFAIE PhylomeDB:Q8GWL4
ProtClustDB:CLSN2680621 ArrayExpress:Q8GWL4 Genevestigator:Q8GWL4
Uniprot:Q8GWL4
Length = 340
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 73/197 (37%), Positives = 110/197 (55%)
Query: 17 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMRNVQIARPTLYQVVK 74
P G G L + P I LK+ LLP+IV + LL ++ P +Q V
Sbjct: 132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVS 190
Query: 75 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQ 134
+++K+GYEV++V++T R+ Y+A L L K G + E + D RPSDAIN+A C+ PI
Sbjct: 191 AVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQAPIY 249
Query: 135 VNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 194
VNK + + +++ G+ + P + +L + D P P ++E LVRNM +A+ E
Sbjct: 250 VNKAIVLEEAIKIGYGGRPQSAKPVFNVILDSAPDGPD--PL--SEELKLVRNMDLASKE 305
Query: 195 ERYRDAAQWRDKLGQLR 211
ERY DAA WRD+L L+
Sbjct: 306 ERYIDAAMWRDRLKNLQ 322
>UNIPROTKB|Q50604 [details] [associations]
symbol:MT1877 "Uncharacterized protein Rv1829/MT1877"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003729 Pfam:PF02577 PROSITE:PS51658 GO:GO:0005886
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842577 eggNOG:COG1259
SUPFAM:SSF103256 PIR:F70721 RefSeq:NP_216345.1 RefSeq:NP_336336.1
RefSeq:YP_006515229.1 ProteinModelPortal:Q50604 SMR:Q50604
PRIDE:Q50604 EnsemblBacteria:EBMYCT00000001729
EnsemblBacteria:EBMYCT00000069610 GeneID:13316620 GeneID:885743
GeneID:923747 KEGG:mtc:MT1877 KEGG:mtu:Rv1829 KEGG:mtv:RVBD_1829
PATRIC:18125897 TubercuList:Rv1829 HOGENOM:HOG000227641 KO:K08999
OMA:RVEMPSN ProtClustDB:CLSK871968 Uniprot:Q50604
Length = 164
Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 29 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 88
P ++L+ +G L PI + + + + + V+ RP + +++++I +G+ ++ VR
Sbjct: 18 PVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76
Query: 89 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 148
+ ++A L + N + RPSD++ IA+R VPI V + + G+ +
Sbjct: 77 IVDLQEGTFYADLIFDR--N----IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLIP 130
Query: 149 -ESGKLSTHSPGSDGL-LFTE-LDKPS 172
ES + +T + D + F E LD S
Sbjct: 131 DESDEEATTAVREDEVEKFKEFLDSVS 157
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 220 220 0.00094 112 3 11 22 0.49 32
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 598 (64 KB)
Total size of DFA: 170 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.84u 0.11s 20.95t Elapsed: 00:00:01
Total cpu time: 20.84u 0.11s 20.95t Elapsed: 00:00:01
Start: Sat May 11 03:33:31 2013 End: Sat May 11 03:33:32 2013