BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027663
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SJ5|A Chain A, Crystal Structure Of A Duf151 Family Protein (tm0160) From
Thermotoga Maritima At 2.8 A Resolution
pdb|1SJ5|B Chain B, Crystal Structure Of A Duf151 Family Protein (tm0160) From
Thermotoga Maritima At 2.8 A Resolution
Length = 164
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 29 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 88
P ++L +E GT +LPI + L AM ++ RP + ++ ++E + V V
Sbjct: 30 PVVILGIE-GTNRVLPIWIGAAEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVI 88
Query: 89 VTKRVHEAYFAQL------YLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYL 139
+ ++A L Y + E + D RPSDAI +AV+ PI V+ L
Sbjct: 89 IHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNL 145
>pdb|1VJL|A Chain A, Crystal Structure Of A Duf151 Family Protein (Tm0160) From
Thermotoga Maritima At 1.90 A Resolution
pdb|1VJL|B Chain B, Crystal Structure Of A Duf151 Family Protein (Tm0160) From
Thermotoga Maritima At 1.90 A Resolution
Length = 164
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 29 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 88
P ++L +E GT +LPI + L A + RP + ++ ++E + V V
Sbjct: 30 PVVILGIE-GTNRVLPIWIGACEGHALALAXEKXEFPRPLTHDLLLSVLESLEARVDKVI 88
Query: 89 VTKRVHEAYFAQL------YLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYL 139
+ ++A L Y + E + D RPSDAI +AV+ PI V+ L
Sbjct: 89 IHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNL 145
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 71 QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVS--FDLRPSDAINIAVR 128
Q + IE +GYEV+LV+ K + + ++L L VGN V F+ I +
Sbjct: 18 QSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIE 77
Query: 129 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTEL 168
PI + G++ + +G S SP S GL + +
Sbjct: 78 SGKPI-----MGIXVGLQALFAG--SVESPKSTGLNYIDF 110
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 71 QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVS--FDLRPSDAINIAVR 128
Q + IE +GYEV+LV+ K + + ++L L VGN V F+ I +
Sbjct: 18 QSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIE 77
Query: 129 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTEL 168
PI + G++ + +G S SP S GL + +
Sbjct: 78 SGKPI-----MGICVGLQALFAG--SVESPKSTGLNYIDF 110
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 120 SDAINIAVRCKVPIQVNKYLAYSDGMRVI----ESGKLS--THSPGSDGLLFTELDKPSG 173
+D IN A+ +PI+V+K YS+ ++ E+GKL H P D +FT P
Sbjct: 168 TDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDPAHIPDED--VFTWTVSPKD 225
Query: 174 QPCLDT 179
P +T
Sbjct: 226 APDEET 231
>pdb|1DBG|A Chain A, Crystal Structure Of Chondroitinase B
pdb|1DBO|A Chain A, Crystal Structure Of Chondroitinase B
Length = 506
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 39 TGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 98
G LLPI+VL + + + V + TLYQVVKE+ K G V++ T +
Sbjct: 8 AGYLLPIMVL----LNVAPCLGQVVASNETLYQVVKEV--KPGGLVQIADGTYKD----- 56
Query: 99 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQ----VNKYLAYSDGMRVIESGKLS 154
QL ++ G ++ + KV ++ + + + + DG R I++ K
Sbjct: 57 VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWK-- 114
Query: 155 THSPG 159
+H PG
Sbjct: 115 SHGPG 119
>pdb|2GO2|A Chain A, Crystal Structure Of Bbki, A Kunitz-Type Kallikrein
Inhibitor
Length = 163
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 99 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 136
A L L K+GNE E + L P + VR + P+++N
Sbjct: 29 AGLALAKIGNEAEPRAVVLDPHHRPGLPVRFESPLRIN 66
>pdb|2B94|A Chain A, Structural Analysis Of P Knowlesi Homolog Of P Falciparum
Pnp
Length = 267
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 25 YAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 65
Y PH I ++ED + + ++ +E+ ++++M +R V+
Sbjct: 183 YYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVKTG 223
>pdb|1NQK|A Chain A, Structural Genomics, Crystal Structure Of Alkanesulfonate
Monooxygenase
Length = 381
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 138 YLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 179
YL +G R ++ G L + +D L +T + P+G+ C D
Sbjct: 17 YLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDA 58
>pdb|1M41|A Chain A, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
pdb|1M41|B Chain B, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
Length = 380
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 138 YLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 179
YL +G R ++ G L + +D L +T + P+G+ C D
Sbjct: 16 YLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDA 57
>pdb|3EMV|A Chain A, Crystal Structure Of Plasmodium Vivax Pnp With Sulphate
Length = 253
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 25 YAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQ 63
Y PH I ++ED + + ++ +E+ ++++M +R V+
Sbjct: 161 YYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVK 199
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 26.9 bits (58), Expect = 8.1, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 127
TLY++ + + E+ L + RV +K+GNET + F L P + +
Sbjct: 494 TLYEITYKAVSSFDPEIDLSNQSGRV----------SKLGNETHFLFFGLYPGTTYSFTI 543
Query: 128 R 128
R
Sbjct: 544 R 544
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,437,849
Number of Sequences: 62578
Number of extensions: 248883
Number of successful extensions: 629
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 14
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)