Query 027663
Match_columns 220
No_of_seqs 219 out of 815
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 2.1E-38 4.5E-43 255.2 14.5 126 21-150 7-132 (135)
2 COG1259 Uncharacterized conser 100.0 1.7E-36 3.8E-41 247.2 15.7 127 20-149 11-137 (151)
3 PF02151 UVR: UvrB/uvrC motif; 98.4 5.8E-07 1.3E-11 56.9 4.9 34 180-213 2-36 (36)
4 COG3880 Modulator of heat shoc 98.4 4.5E-07 9.8E-12 75.6 4.9 38 177-214 133-171 (176)
5 COG0556 UvrB Helicase subunit 95.3 0.026 5.6E-07 55.3 5.1 36 179-214 623-659 (663)
6 PRK05298 excinuclease ABC subu 94.7 0.049 1.1E-06 54.3 5.2 35 180-214 613-648 (652)
7 TIGR00631 uvrb excinuclease AB 94.6 0.032 6.9E-07 55.8 3.8 32 180-211 623-655 (655)
8 PRK00558 uvrC excinuclease ABC 94.4 0.057 1.2E-06 53.5 4.9 35 180-214 202-237 (598)
9 PRK07883 hypothetical protein; 94.0 0.08 1.7E-06 52.0 4.9 35 180-214 406-441 (557)
10 PRK12306 uvrC excinuclease ABC 93.4 0.11 2.4E-06 50.7 4.9 35 180-214 192-227 (519)
11 PRK14666 uvrC excinuclease ABC 93.0 0.13 2.8E-06 51.8 4.7 35 180-214 201-236 (694)
12 TIGR00194 uvrC excinuclease AB 92.8 0.16 3.4E-06 50.2 5.0 34 181-214 195-229 (574)
13 PRK14668 uvrC excinuclease ABC 92.5 0.18 3.9E-06 49.9 4.8 34 181-214 200-234 (577)
14 PRK14667 uvrC excinuclease ABC 92.4 0.18 3.8E-06 49.8 4.7 35 180-214 199-234 (567)
15 PRK14672 uvrC excinuclease ABC 92.4 0.17 3.7E-06 50.9 4.7 33 180-212 205-238 (691)
16 PRK14669 uvrC excinuclease ABC 92.4 0.18 4E-06 50.3 4.9 35 180-214 203-238 (624)
17 PRK14671 uvrC excinuclease ABC 92.3 0.2 4.2E-06 50.0 4.8 35 180-214 215-250 (621)
18 PRK14670 uvrC excinuclease ABC 92.1 0.2 4.4E-06 49.5 4.6 35 180-214 177-212 (574)
19 COG0322 UvrC Nuclease subunit 90.9 0.36 7.8E-06 47.9 5.0 35 180-214 202-237 (581)
20 PF14305 ATPgrasp_TupA: TupA-l 68.4 15 0.00032 32.2 6.0 48 61-108 172-221 (239)
21 PF10130 PIN_2: PIN domain; I 58.8 7.3 0.00016 31.3 2.1 73 65-146 49-121 (133)
22 TIGR00638 Mop molybdenum-pteri 48.6 61 0.0013 21.8 5.3 51 84-136 8-58 (69)
23 PF13670 PepSY_2: Peptidase pr 41.6 1.3E+02 0.0028 21.5 6.7 47 68-118 29-75 (83)
24 PF12386 Peptidase_C71: Pseudo 34.8 1.4E+02 0.0031 24.2 5.9 43 65-107 56-99 (142)
25 PF13793 Pribosyltran_N: N-ter 32.2 1.1E+02 0.0024 23.8 4.9 41 67-107 7-47 (116)
26 PF14334 DUF4390: Domain of un 32.1 2E+02 0.0044 23.4 6.7 46 81-139 5-50 (165)
27 COG5509 Uncharacterized small 30.7 69 0.0015 22.7 3.1 26 193-218 27-52 (65)
28 COG4374 PIN domain nuclease, a 30.2 41 0.00089 26.9 2.1 23 121-143 98-120 (130)
29 PHA02571 a-gt.4 hypothetical p 29.1 1.5E+02 0.0032 23.4 5.0 33 180-212 14-51 (109)
30 PF14824 Sirohm_synth_M: Siroh 28.0 57 0.0012 19.9 2.0 11 199-209 18-28 (30)
31 PF04420 CHD5: CHD5-like prote 27.1 60 0.0013 26.7 2.8 35 180-214 47-82 (161)
32 PF07179 SseB: SseB protein N- 26.5 2.7E+02 0.0058 20.5 8.4 66 23-94 46-111 (124)
33 PRK11020 hypothetical protein; 25.8 1.4E+02 0.003 23.8 4.4 35 180-214 12-47 (118)
34 PF11464 Rbsn: Rabenosyn Rab b 25.6 2E+02 0.0043 18.8 5.1 38 180-217 3-41 (42)
35 PRK02315 adaptor protein; Prov 23.6 1.4E+02 0.0031 26.0 4.6 67 75-148 153-219 (233)
36 cd07963 Anticodon_Ia_Cys Antic 23.6 1.2E+02 0.0026 24.2 3.9 29 182-210 112-141 (156)
37 COG2706 3-carboxymuconate cycl 22.9 58 0.0013 30.6 2.0 18 5-22 253-280 (346)
38 PF12510 Smoothelin: Smootheli 22.3 1.8E+02 0.0039 20.1 3.9 29 183-213 25-53 (54)
39 PF13838 Clathrin_H_link: Clat 22.2 1.4E+02 0.003 21.4 3.4 21 183-203 7-28 (66)
40 COG0029 NadB Aspartate oxidase 22.0 3.7E+02 0.008 26.7 7.3 105 29-134 109-224 (518)
41 KOG4825 Component of synaptic 20.8 74 0.0016 31.3 2.3 29 183-211 174-203 (666)
42 cd04893 ACT_GcvR_1 ACT domains 20.5 3.1E+02 0.0067 19.2 6.1 41 64-105 9-49 (77)
43 PRK00409 recombination and DNA 20.5 4.2E+02 0.0091 27.4 7.9 26 117-146 485-510 (782)
44 PRK13169 DNA replication intia 20.1 2.4E+02 0.0052 22.1 4.7 33 179-211 21-56 (110)
45 PF08700 Vps51: Vps51/Vps67; 20.0 3.1E+02 0.0067 19.3 5.1 36 179-214 32-67 (87)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=2.1e-38 Score=255.19 Aligned_cols=126 Identities=29% Similarity=0.470 Sum_probs=106.4
Q ss_pred ccCCCCCCcEEEEEEeCCCceEEEEEEccHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEE
Q 027663 21 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ 100 (220)
Q Consensus 21 ~l~~~~~~pvlvL~~~~~~~r~LPI~Ig~~eA~aI~~~l~~~~~~RPlThDLl~~vl~~lg~~v~~V~I~~~~dGvf~A~ 100 (220)
.+++.++.|+++|++++++ +.||||||..||.+|+.++++..++||+|||||.++++++|.++.+|+|++++||+|||+
T Consensus 7 ~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~ 85 (135)
T PF02577_consen 7 SVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYAR 85 (135)
T ss_dssp EEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEE
T ss_pred EEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEE
Confidence 4566678999999999877 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhhhhcCeeeeec
Q 027663 101 LYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 150 (220)
Q Consensus 101 L~l~~~~~~~~~~~iDaRPSDAIaLAlr~~~PIyV~e~Vl~~~~i~~~~~ 150 (220)
|++.+++ ++.++||||||||+||+++++||||+++|++++|+++..+
T Consensus 86 L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~~ 132 (135)
T PF02577_consen 86 LVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEEE 132 (135)
T ss_dssp EEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--HH
T ss_pred EEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCchh
Confidence 9998776 7899999999999999999999999999999999998743
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=247.24 Aligned_cols=127 Identities=26% Similarity=0.431 Sum_probs=117.8
Q ss_pred CccCCCCCCcEEEEEEeCCCceEEEEEEccHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEEE
Q 027663 20 GHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFA 99 (220)
Q Consensus 20 g~l~~~~~~pvlvL~~~~~~~r~LPI~Ig~~eA~aI~~~l~~~~~~RPlThDLl~~vl~~lg~~v~~V~I~~~~dGvf~A 99 (220)
-++.+..+.|++++...+++++.||||||..||.+|+.++++..|+||+||||+.++++.++.++.+|+|++++||||||
T Consensus 11 i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA 90 (151)
T COG1259 11 IFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYA 90 (151)
T ss_pred EEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEE
Confidence 35667788997777777777789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhhhhcCeeeee
Q 027663 100 QLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 149 (220)
Q Consensus 100 ~L~l~~~~~~~~~~~iDaRPSDAIaLAlr~~~PIyV~e~Vl~~~~i~~~~ 149 (220)
+|++++++ ....+||||||||+||+|.|+||||.++|+++++++..+
T Consensus 91 ~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~ 137 (151)
T COG1259 91 TLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED 137 (151)
T ss_pred EEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence 99999987 569999999999999999999999999999999888764
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.41 E-value=5.8e-07 Score=56.91 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 213 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~ 213 (220)
..+..|+..|..|++ ++||+||.|||+|..++++
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 356789999999998 9999999999999999864
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.38 E-value=4.5e-07 Score=75.61 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 177 LDTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 177 ~~~~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
..+.++.+|++.|+++|+ |+||+||.|||+|+.||.+.
T Consensus 133 ~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 133 NPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456889999999999998 99999999999999999764
No 5
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.32 E-value=0.026 Score=55.34 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 179 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 179 ~~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.+.++.|+++|.+|.+ -+||+||++||+|++|++..
T Consensus 623 ~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~ 659 (663)
T COG0556 623 EKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEEL 659 (663)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 4567888888888887 99999999999999998754
No 6
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.67 E-value=0.049 Score=54.34 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
..+..|+++|++|.+ .+||+||++||+|+.|++..
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~ 648 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL 648 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 456779999999998 99999999999999998654
No 7
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.64 E-value=0.032 Score=55.82 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR 211 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~ 211 (220)
..++.|+++|++|.+ .+||+||++||+|+.|+
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 445778999999988 99999999999999874
No 8
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=94.38 E-value=0.057 Score=53.49 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-++.|++.|++|.+ .+||+||.+||+|..++.-.
T Consensus 202 ~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~ 237 (598)
T PRK00558 202 EVLKELEEKMEEASENLEFERAARYRDQIQALRRVQ 237 (598)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 345779999999987 99999999999999998654
No 9
>PRK07883 hypothetical protein; Validated
Probab=93.97 E-value=0.08 Score=51.99 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-++.|+++|++|.+ .+||+||++||+|..++.-.
T Consensus 406 ~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~ 441 (557)
T PRK07883 406 AVLAALRARIDRLAAAERFEEAARLRDRLAALLRAL 441 (557)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 345778999999987 99999999999999998643
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=93.44 E-value=0.11 Score=50.71 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-+..|++.|++|.+ .+||+||++||.|..++.-.
T Consensus 192 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~~~ 227 (519)
T PRK12306 192 ELIEKLEEEMAEKAKNQQFERALVIRDEINAIENLQ 227 (519)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345778889999987 99999999999999998533
No 11
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=92.99 E-value=0.13 Score=51.81 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-+..|++.|++|.+ .+||+||++||.|+.++.-.
T Consensus 201 ~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~~ 236 (694)
T PRK14666 201 ELVDALRTEMEAASEALEFERAAVLRDQIRAVERTV 236 (694)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 345778999999997 99999999999999998644
No 12
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=92.83 E-value=0.16 Score=50.23 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 181 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 181 ~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
-+..|++.|++|.+ .+||+||++||.|+.++.-.
T Consensus 195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~ 229 (574)
T TIGR00194 195 VIKELEQKMEKASENLEFEEAARIRDQIAAVRELN 229 (574)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35678888888887 99999999999999998543
No 13
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=92.46 E-value=0.18 Score=49.85 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 181 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 181 ~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
-++.|++.|++|.+ .+||+||++||.|..++.-.
T Consensus 200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~~~ 234 (577)
T PRK14668 200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEAFH 234 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45778899999987 99999999999999998533
No 14
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=92.44 E-value=0.18 Score=49.84 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-+..|++.|++|-+ .+||+||++||.|..++.-.
T Consensus 199 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~ 234 (567)
T PRK14667 199 EVLPELYDKIEEYSQKLMFEKAAVIRDQILALENLI 234 (567)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 345778888888887 99999999999999998643
No 15
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=92.44 E-value=0.17 Score=50.89 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 212 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~ 212 (220)
.-+..|++.|++|.+ .+||+||++||.|..++.
T Consensus 205 ~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~ 238 (691)
T PRK14672 205 ATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRC 238 (691)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 335778888999987 999999999999999985
No 16
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=92.44 E-value=0.18 Score=50.26 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-+..|++.|++|.+ .+||+||++||.|+.++.-.
T Consensus 203 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~ 238 (624)
T PRK14669 203 DLARSLRARMEAAALEMQFELAAKYRDLITTVEELE 238 (624)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 345778888888887 99999999999999998643
No 17
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=92.28 E-value=0.2 Score=50.02 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-++.|++.|++|.+ .+||+||++||.|..++.-.
T Consensus 215 ~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~~~ 250 (621)
T PRK14671 215 ALIRSLTEEMQRAAAELKFEEAAELKDQIESLKRYA 250 (621)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 345778888999987 99999999999999997533
No 18
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=92.09 E-value=0.2 Score=49.51 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-+..|++.|++|.+ .+||+||++||.|..++.-.
T Consensus 177 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~~ 212 (574)
T PRK14670 177 KLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEIS 212 (574)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 345778888899987 99999999999999998643
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=90.94 E-value=0.36 Score=47.86 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.-+..|++.|++|-+ .+||+||++||.|+.++.-.
T Consensus 202 ~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~ 237 (581)
T COG0322 202 AVLQELEEKMEEASENLDFERAARLRDQIKALEKLQ 237 (581)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 345778899999987 99999999999999998644
No 20
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=68.38 E-value=15 Score=32.20 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.9
Q ss_pred cCCCCCCChHHHHHHHHHHhC--CeEeEEEEEeeECCEEEEEEEEeecCc
Q 027663 61 NVQIARPTLYQVVKEMIEKMG--YEVRLVRVTKRVHEAYFAQLYLTKVGN 108 (220)
Q Consensus 61 ~~~~~RPlThDLl~~vl~~lg--~~v~~V~I~~~~dGvf~A~L~l~~~~~ 108 (220)
....++|-..+=|.++.+.|+ ....||=.+...+++|++.|.|..+++
T Consensus 172 ~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 172 DEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGAG 221 (239)
T ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCCc
Confidence 456799999999999999994 567788888999999999999976653
No 21
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=58.82 E-value=7.3 Score=31.32 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhhhhcC
Q 027663 65 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDG 144 (220)
Q Consensus 65 ~RPlThDLl~~vl~~lg~~v~~V~I~~~~dGvf~A~L~l~~~~~~~~~~~iDaRPSDAIaLAlr~~~PIyV~e~Vl~~~~ 144 (220)
.+-++-+-+..++..+- ..|.|. ..+.|. . +..... .....+|-.=---+|||+..+|||+....=+-.+|
T Consensus 49 k~~l~~~~~~~~l~~l~---~~I~iv--~~~~~~-~-~~~~A~--~~~~~~D~~D~p~vALaL~l~~~IWT~Dkdl~~~G 119 (133)
T PF10130_consen 49 KSKLSEEELEEVLNILF---SRIKIV--PEEIYS-E-NIEEAR--EIIRDRDPDDWPFVALALQLNAPIWTEDKDLFGSG 119 (133)
T ss_pred HhCCCHHHHHHHHHHHH---hheEEe--cHHHhH-H-HHHHHH--HHhcCCCcchHHHHHHHHHcCCCeecCcHHHHhcC
Confidence 34456666666766552 233332 344444 1 111110 01123455555579999999999999998887666
Q ss_pred ee
Q 027663 145 MR 146 (220)
Q Consensus 145 i~ 146 (220)
+.
T Consensus 120 l~ 121 (133)
T PF10130_consen 120 LA 121 (133)
T ss_pred cc
Confidence 54
No 22
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=48.58 E-value=61 Score=21.82 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=39.1
Q ss_pred EeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEe
Q 027663 84 VRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 136 (220)
Q Consensus 84 v~~V~I~~~~dGvf~A~L~l~~~~~~~~~~~iDaRPSDAIaLAlr~~~PIyV~ 136 (220)
.....|.++..+...+++.+.-+++ ..+.-.+-++.+-.|+++-|.|+|+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 4556777777777788888877552 35666777888999999999999975
No 23
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=41.56 E-value=1.3e+02 Score=21.51 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCC
Q 027663 68 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLR 118 (220)
Q Consensus 68 lThDLl~~vl~~lg~~v~~V~I~~~~dGvf~A~L~l~~~~~~~~~~~iDaR 118 (220)
++..-+...++..|+.|.+|.+++ +|.|-.+....+|.. -.+.+|.+
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~~--~ev~vD~~ 75 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGKK--VEVYVDPA 75 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCCE--EEEEEcCC
Confidence 457777888888899999998864 788999966655532 34455544
No 24
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=34.83 E-value=1.4e+02 Score=24.19 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCChHHHHHHHHHHhCCeEeEEEEEee-ECCEEEEEEEEeecC
Q 027663 65 ARPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVG 107 (220)
Q Consensus 65 ~RPlThDLl~~vl~~lg~~v~~V~I~~~-~dGvf~A~L~l~~~~ 107 (220)
..-..-.||..+++.||..|.=+.+--- .+|++|+.+.|.-++
T Consensus 56 NCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~ 99 (142)
T PF12386_consen 56 NCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKH 99 (142)
T ss_pred CchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecc
Confidence 3344578999999999986654444322 599999999998765
No 25
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=32.23 E-value=1.1e+02 Score=23.82 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecC
Q 027663 67 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVG 107 (220)
Q Consensus 67 PlThDLl~~vl~~lg~~v~~V~I~~~~dGvf~A~L~l~~~~ 107 (220)
+...+|-..+.+.+|..+..+.+..+.||-.|.++--.-.|
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g 47 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRG 47 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TT
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccC
Confidence 44578888999999999999999999999999988654433
No 26
>PF14334 DUF4390: Domain of unknown function (DUF4390)
Probab=32.08 E-value=2e+02 Score=23.40 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhh
Q 027663 81 GYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYL 139 (220)
Q Consensus 81 g~~v~~V~I~~~~dGvf~A~L~l~~~~~~~~~~~iDaRPSDAIaLAlr~~~PIyV~e~V 139 (220)
++.+..+.+. ..+|.|+.+ ..+|...+..+.=||..|+|+|..=++
T Consensus 5 ~~~i~~~~~~-~~~~~l~l~------------a~~~~~l~~~l~~AL~~Gipl~f~~~~ 50 (165)
T PF14334_consen 5 SIEIRSAELE-NSDGGLYLS------------ADVDFELSPELEDALKNGIPLYFVFEI 50 (165)
T ss_pred ccEEEEEEEE-EeCCEEEEE------------EEEeccCCHHHHHHHHcCCeEEEEEEE
Confidence 5678888888 566766632 347778899999999999999987543
No 27
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.74 E-value=69 Score=22.73 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhccc
Q 027663 193 VEERYRDAAQWRDKLGQLRAKRNLRK 218 (220)
Q Consensus 193 i~E~YE~Aa~iRDei~~~~~~~~~~~ 218 (220)
|.|=-|+=|.|++||.|++.+.+.++
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33666788999999999998765543
No 28
>COG4374 PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction]
Probab=30.16 E-value=41 Score=26.92 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCEEEehhhhhhc
Q 027663 121 DAINIAVRCKVPIQVNKYLAYSD 143 (220)
Q Consensus 121 DAIaLAlr~~~PIyV~e~Vl~~~ 143 (220)
-|+.||.+.+.|||+.+..+.+-
T Consensus 98 ACl~la~~~k~pvlTAdk~Wa~l 120 (130)
T COG4374 98 ACLGLAEALKLPVLTADKGWAEL 120 (130)
T ss_pred HHHHHHHHhCCceeeccchhhhC
Confidence 48999999999999999988654
No 29
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=29.14 E-value=1.5e+02 Score=23.42 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHH----HHHHHHHHH
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQW----RDKLGQLRA 212 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~i----RDei~~~~~ 212 (220)
.+.+++...+++.++ |.=-+|+++ |-||+||+.
T Consensus 14 ~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~ 51 (109)
T PHA02571 14 EEVEELLSELQARNEAEAEKKAAKILKKNRREIKRLKK 51 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 446777888888887 888889888 889999874
No 30
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=27.97 E-value=57 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.133 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 027663 199 DAAQWRDKLGQ 209 (220)
Q Consensus 199 ~Aa~iRDei~~ 209 (220)
.|+.||++|.+
T Consensus 18 la~~iR~~ie~ 28 (30)
T PF14824_consen 18 LARLIRKEIER 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46667777664
No 31
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.10 E-value=60 Score=26.71 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
.++..+++.+...=. ++|-+.|++|-++++++++-
T Consensus 47 ~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el 82 (161)
T PF04420_consen 47 KEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEEL 82 (161)
T ss_dssp HHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555433 89999999999988887654
No 32
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=26.46 E-value=2.7e+02 Score=20.53 Aligned_cols=66 Identities=14% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCCCCCcEEEEEEeCCCceEEEEEEccHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeEC
Q 027663 23 PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVH 94 (220)
Q Consensus 23 ~~~~~~pvlvL~~~~~~~r~LPI~Ig~~eA~aI~~~l~~~~~~RPlThDLl~~vl~~lg~~v~~V~I~~~~d 94 (220)
+...+..+..+...+|+ +.||++-+..+..+... ...+-..++..=+...+. ......|+|+-..+
T Consensus 46 ~~~~~~~~~~~~~~dg~-~~lpvFTs~e~l~~~~~---~~~~~~~~~~~~l~~~~~--~~~~~giviNP~~~ 111 (124)
T PF07179_consen 46 DDDSEIQFLTLEDPDGE-RYLPVFTSWEELEKWYP---DERPIIVVPFEDLLEMLL--NNEGDGIVINPGTP 111 (124)
T ss_pred cCCCcceeEEEEcCCCC-EEEEEECCHHHHHhhhc---ccCceecccHHHHHHHhh--cCCCcEEEEECCCC
Confidence 33345555666667777 79999998888665532 112222333333333333 23447778775444
No 33
>PRK11020 hypothetical protein; Provisional
Probab=25.83 E-value=1.4e+02 Score=23.80 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~ 214 (220)
..++.++..|.+|.. .|-|.-+++.+||..+.++.
T Consensus 12 drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I 47 (118)
T PRK11020 12 DRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEI 47 (118)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 345678888888987 99999999999999887554
No 34
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=25.58 E-value=2e+02 Score=18.81 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhhhcc
Q 027663 180 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRNLR 217 (220)
Q Consensus 180 ~~~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~~~~~~~ 217 (220)
.++..++..+++|-. -.||+.+.|..=++.|+.+.+++
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~~q 41 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRELQDEIDEQ 41 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 356778899999998 99999999999888888766543
No 35
>PRK02315 adaptor protein; Provisional
Probab=23.65 E-value=1.4e+02 Score=25.99 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=46.7
Q ss_pred HHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhhhhcCeeee
Q 027663 75 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 148 (220)
Q Consensus 75 ~vl~~lg~~v~~V~I~~~~dGvf~A~L~l~~~~~~~~~~~iDaRPSDAIaLAlr~~~PIyV~e~Vl~~~~i~~~ 148 (220)
++...+...-..=..+.+ +|.||-.|.+..++ .-+..+.|.+++++.++-|=.++..++.+.|-.+.
T Consensus 153 ~la~~l~~~~~~s~LY~~-~~~YYL~l~~~~~~------~~~~~~~~~~ail~EYg~~s~~t~~~l~EhGk~Im 219 (233)
T PRK02315 153 SLAKTLKVEDLASELYKY-EGRYYLTVLFDDEN------YPEEEIDDMLAILLEYANESDLTIHRLQEYGKVIM 219 (233)
T ss_pred HHHHhcCcCcccccCeEE-CCEEEEEEEecCcc------CCHHHHHHHHHHHHHhCCCCcccHHHHHHhchhhh
Confidence 445555332223344444 89999888875432 13446899999999999999999999998876654
No 36
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=23.57 E-value=1.2e+02 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 027663 182 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQL 210 (220)
Q Consensus 182 ~~~l~~~l~~ai~-E~YE~Aa~iRDei~~~ 210 (220)
+..|=+.=.+|-+ -+|++|=+|||+|..+
T Consensus 112 v~~Ll~~R~~aR~~Kdf~~AD~IRd~L~~~ 141 (156)
T cd07963 112 IEALIAQRNQARKAKDWAEADRIRDELAAQ 141 (156)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHC
Confidence 4445455556666 8999999999999765
No 37
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.92 E-value=58 Score=30.55 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=14.4
Q ss_pred cCCceeE----------EeecCCCCCcc
Q 027663 5 RDGRHLR----------CVHNNPQGGHL 22 (220)
Q Consensus 5 ~~~~~~~----------~~~~~~~~g~l 22 (220)
.|||||| ||||+|..|.|
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L 280 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKL 280 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEE
Confidence 5899998 58888888754
No 38
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=22.35 E-value=1.8e+02 Score=20.08 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 027663 183 NLVRNMLIAAVEERYRDAAQWRDKLGQLRAK 213 (220)
Q Consensus 183 ~~l~~~l~~ai~E~YE~Aa~iRDei~~~~~~ 213 (220)
+.|+++|+.+ .+||+=-.||-.|+.++++
T Consensus 25 ~~L~kmLe~~--~dyeeRr~IRaaiR~lr~~ 53 (54)
T PF12510_consen 25 EVLEKMLEAT--TDYEERRRIRAAIRELRKK 53 (54)
T ss_pred HHHHHHHHHh--ccHHHHHHHHHHHHHHHhc
Confidence 4455555443 7899999999999999875
No 39
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=22.15 E-value=1.4e+02 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHH-hhhHHHHHH
Q 027663 183 NLVRNMLIAAVE-ERYRDAAQW 203 (220)
Q Consensus 183 ~~l~~~l~~ai~-E~YE~Aa~i 203 (220)
++..++.++.+. -+|++||++
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~ 28 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKV 28 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 456788889998 999999998
No 40
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=21.99 E-value=3.7e+02 Score=26.71 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=59.9
Q ss_pred cEEEEEEeCCC-ceEEEEEEccHHHHHHHHHhccCCCCCCCh---HH-HHHHHHHHhCCeEeEEEEEeeE--CCEEEEEE
Q 027663 29 PAIVLKMEDGT-GLLLPIIVLEMPSVLLMAAMRNVQIARPTL---YQ-VVKEMIEKMGYEVRLVRVTKRV--HEAYFAQL 101 (220)
Q Consensus 29 pvlvL~~~~~~-~r~LPI~Ig~~eA~aI~~~l~~~~~~RPlT---hD-Ll~~vl~~lg~~v~~V~I~~~~--dGvf~A~L 101 (220)
+-+.|.-+.+. .|.+ +-++......|..+|......||.. .+ ...+++..=+..+..|...+-. -++|+|.-
T Consensus 109 g~~~lt~EggHS~rRI-lH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~ 187 (518)
T COG0029 109 GRLHLTREGGHSRRRI-LHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKA 187 (518)
T ss_pred CceeeeeecccCCceE-EEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCe
Confidence 34566655542 2223 4555577778888887655555543 23 3345555555455566555432 26776665
Q ss_pred EEeecCccceEEEEe----CChHHHHHHHHHcCCCEE
Q 027663 102 YLTKVGNETECVSFD----LRPSDAINIAVRCKVPIQ 134 (220)
Q Consensus 102 ~l~~~~~~~~~~~iD----aRPSDAIaLAlr~~~PIy 134 (220)
++--.|+-+.....- .-..|+|+||.|.||.+-
T Consensus 188 vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~ 224 (518)
T COG0029 188 VVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVA 224 (518)
T ss_pred EEEecCCCcccccccCCCccccccHHHHHHHcCCeec
Confidence 554333322344443 345699999999999863
No 41
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=20.79 E-value=74 Score=31.32 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 027663 183 NLVRNMLIAAVE-ERYRDAAQWRDKLGQLR 211 (220)
Q Consensus 183 ~~l~~~l~~ai~-E~YE~Aa~iRDei~~~~ 211 (220)
-.+.+.-+.||. |+|..|-...-.|..|+
T Consensus 174 gaidenKqeAVakEdfdlAKkaklAiaDLk 203 (666)
T KOG4825|consen 174 GAIDENKQEAVAKEDFDLAKKAKLAIADLK 203 (666)
T ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 334444455554 66666555554444443
No 42
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=20.52 E-value=3.1e+02 Score=19.16 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEee
Q 027663 64 IARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 105 (220)
Q Consensus 64 ~~RPlThDLl~~vl~~lg~~v~~V~I~~~~dGvf~A~L~l~~ 105 (220)
|-||..=.=+..++...|..+..+.-+. .+|.|+.++.++.
T Consensus 9 ~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~ 49 (77)
T cd04893 9 TDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEG 49 (77)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEe
Confidence 4566666666788888899999998887 8899999999864
No 43
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.49 E-value=4.2e+02 Score=27.41 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHcCCCEEEehhhhhhcCee
Q 027663 117 LRPSDAINIAVRCKVPIQVNKYLAYSDGMR 146 (220)
Q Consensus 117 aRPSDAIaLAlr~~~PIyV~e~Vl~~~~i~ 146 (220)
+.-|.|+.+|-++|.| ++|+++|--.
T Consensus 485 ~g~S~a~~iA~~~Glp----~~ii~~A~~~ 510 (782)
T PRK00409 485 PGKSNAFEIAKRLGLP----ENIIEEAKKL 510 (782)
T ss_pred CCCcHHHHHHHHhCcC----HHHHHHHHHH
Confidence 5679999999999998 5666665433
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.07 E-value=2.4e+02 Score=22.07 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHH
Q 027663 179 TKEFNLVRNMLIAAVEERYRDAAQ---WRDKLGQLR 211 (220)
Q Consensus 179 ~~~~~~l~~~l~~ai~E~YE~Aa~---iRDei~~~~ 211 (220)
..++..||+.+.+.++|+.+.-.. ||+.|..++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356688999999999888877655 888888763
No 45
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.01 E-value=3.1e+02 Score=19.35 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 027663 179 TKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 214 (220)
Q Consensus 179 ~~~~~~l~~~l~~ai~E~YE~Aa~iRDei~~~~~~~ 214 (220)
..++...+..|+..|-++|.+--..-|+|..++...
T Consensus 32 ~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~ 67 (87)
T PF08700_consen 32 RQEIEEKDEELRKLVYENYRDFIEASDEISSMENDL 67 (87)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 355567778888999899999999999999998654
Done!