BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027664
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+
pdb|1YQD|B Chain B, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+
pdb|1YQX|A Chain A, Sinapyl Alcohol Dehydrogenase At 2.5 Angstrom Resolution
pdb|1YQX|B Chain B, Sinapyl Alcohol Dehydrogenase At 2.5 Angstrom Resolution
Length = 366
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 157/219 (71%), Positives = 179/219 (81%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
MVA+E +++R P+ PLD APLLCAGITVYSPL+++GLD+PG K
Sbjct: 146 MVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVK 205
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
FAKA G KVTVISTSPSKK EA++ GADSFLVSRDQ++MQAA GT+DGIIDTVSAVHPL
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
+PL GLLKS GKL+L+GAPEKPLELPAF L+ GRKIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 266 LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI 325
Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
ADIEVI DY+NTAMERLAK DVRYRFVIDV NT+ +T
Sbjct: 326 TADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAAT 364
>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases, Atcad5
pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases Atcad5
Length = 357
Score = 199 bits (507), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 137/214 (64%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V + FVV+IPEG ++ APLLCAG+TVYSPL +GL +PG+ K
Sbjct: 140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKI 199
Query: 62 AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM 121
AKAMG VTVIS+S K+ EA++ LGAD +++ DQ +M ++D +IDTV H L
Sbjct: 200 AKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259
Query: 122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR 181
P + LLK GKL+L+G PL+ L+ GRK++ GS IG +KET+EM++F + +
Sbjct: 260 PYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLS 319
Query: 182 ADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 215
+ IEV+ DYVNTA ERL K DVRYRFV+DV +
Sbjct: 320 SIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGS 353
>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol
Dehydrogenase-Like Protein Yahk
Length = 369
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 128/213 (60%), Gaps = 4/213 (1%)
Query: 1 MVADEHFVVRIPE-GAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
+V E +V+RI L A APLLCAGIT YSPLR + PG
Sbjct: 153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGI 211
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
K A AMG V +TS +K+ EA + LGAD + SR+ DEM A + + D I++TV+A H
Sbjct: 212 KLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 270
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
L LLK G + L+GAP P + P F L+ R+ + GS+IGG+ ETQEM+DF A+H
Sbjct: 271 LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEH 330
Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
I ADIE+I AD +N A ER+ + DV+YRFVID
Sbjct: 331 GIVADIEMIRADQINEAYERMLRGDVKYRFVID 363
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 14/221 (6%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
+V DE++V+ + + APL+ APLLCAGIT YSPL+F + K G K
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTK-GTKVGVAGFGGLGSMAVK 194
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
+A AMG +V+V + + KK +A+ +G F Q + + +D II T+ + L
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDALS-MGVKHFYTDPKQCKEE-----LDFIISTIPTHYDL 248
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLE----LPAFPLLT-GRKIVGGSLIGGLKETQEMIDFA 175
+ LL G L L+G P P+E L F + G + V GSLIGG+KETQEM+DF+
Sbjct: 249 KDYLKLLTYNGDLALVGLP--PVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFS 306
Query: 176 AKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
KHNI +I++I ++TA L ++R+VID+ +
Sbjct: 307 IKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF 347
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 11/213 (5%)
Query: 5 EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKA 64
EHFVV IPE P APLLC G+TVYSPL G PG +KA
Sbjct: 143 EHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCG-PGKKVGIVGLGGIGSMGTLISKA 201
Query: 65 MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAV----HP 119
MG + VIS S K+ +A+ ++GAD ++ + ++ D + T D I+ S++
Sbjct: 202 MGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 260
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
+MP +K G++V + PE+ L P + S +G +KE +++ ++ +
Sbjct: 261 IMP--KAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKD 318
Query: 180 IRADIEVIPADY--VNTAMERLAKADVRYRFVI 210
I+ +E +P V+ A ER+ K DVRYRF +
Sbjct: 319 IKIWVETLPVGEAGVHEAFERMEKGDVRYRFTL 351
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 5/214 (2%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
+VAD ++V +P+ AP+LCAG+TVY L+ +PG +
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIGGLGHVAVQ 184
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
+A+AMG++V + +K + A RLGA+ + +RD D +Q +G G++ T +
Sbjct: 185 YARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP 243
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
IG+++ G + L G P P F ++ + GS++G + QE +DFAA
Sbjct: 244 KAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAH 303
Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
+++A + D VN RL + V R V+D
Sbjct: 304 GDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLD 337
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
+VV+IP+ + AP+ CAG+T Y L+ G KPG ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMG 188
Query: 67 VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
+ V + +K E + LGAD + +D M+ +G + + T +
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF-PLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRA 182
++ G VL+G P + + +P F +L G KI+G S++G K+ QE + FAA+ ++
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG-SIVGTRKDLQEALQFAAEGKVKT 306
Query: 183 DIEVIPADYVNTAMERLAKADVRYRFVI 210
IEV P + +N +R+ K + R V+
Sbjct: 307 IIEVQPLEKINEVFDRMLKGQINGRVVL 334
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
+VV+IP+ + AP+ CAG+T Y L+ G KPG ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGFGHVAVQYAKAMG 188
Query: 67 VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
+ V + +K E + LGAD + +D M+ +G + + T +
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF-PLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRA 182
++ G VL+G P + + +P F +L G KI+G S++G K+ QE + FAA+ ++
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG-SIVGTRKDLQEALQFAAEGKVKT 306
Query: 183 DIEVIPADYVNTAMERLAKADVRYRFVI 210
IEV P + +N +R+ K + R V+
Sbjct: 307 IIEVQPLEKINEVFDRMLKGQINGRVVL 334
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 5/215 (2%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
++AD ++V +P+ AP+LCAG+TVY L+ +PG +
Sbjct: 130 VLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQ 188
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA---MGTMDGIIDTVSAV 117
+A+AMG+ V I +K E +LGA + +R +D ++A +G G++ T +
Sbjct: 189 YARAMGLHVAAIDIDDAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN 247
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
IG+ + G + L+G P P F ++ + GS++G + QE +DFA +
Sbjct: 248 SAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGE 307
Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
++A I D +N ++++ + R V+++
Sbjct: 308 GLVKATIHPGKLDDINQILDQMRAGQIEGRIVLEM 342
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
+VAD +FV +P+ + AP+LCAG+TVY L+ KPG +
Sbjct: 149 VVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVTDT-KPGDWVVISGIGGLGHMAVQ 207
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVS 115
+A+AMG+ V + +K + RLGA + ++ + A + G G++ T
Sbjct: 208 YARAMGLNVAAVDID-DRKLDLARRLGATVTVNAKTVADPAAYIRKETDGGAQGVLVTAV 266
Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFA 175
+ +G++ G + L G P L F ++ V GS++G + QE +DFA
Sbjct: 267 SPKAFEQALGMVARGGTVSLNGLPPGDFPLSIFNMVLNGVTVRGSIVGTRLDLQESLDFA 326
Query: 176 AKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
A ++A I+ + +N + + + ++ R V+D+
Sbjct: 327 ADGKVKATIQTGKLEDINAIFDDMRQGNIEGRIVMDL 363
>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|B Chain B, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|C Chain C, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|D Chain D, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
Length = 347
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 7/217 (3%)
Query: 3 ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFA 62
AD IP+G L AP+LCAGITVY L+ L ++A
Sbjct: 131 ADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYA 190
Query: 63 KAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM----GTMDGIIDTVSAV 117
KAMG +V I K+ E +G + F+ ++++D + A + G G+I+ +
Sbjct: 191 KAMGYRVLGIDGGEGKE-ELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE 249
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAA 176
+ +++ G VL+G P F + + GS +G +T+E +DF A
Sbjct: 250 AAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFA 309
Query: 177 KHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
+ +++ I+V+ + E++ K + R+V+D +
Sbjct: 310 RGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS 346
>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
Length = 348
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 1 MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
+VAD + V++P+G P++A++ + CAG+T Y ++ G+ KPG
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60 KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQ---AAMGTMDGIID 112
++AK G KV + + K + A +++GAD + S D DE++ +G I+
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVIINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
V+ + + LK GK+V + P + L ++ V GSL+G + E
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVALPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAF 298
Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
F A+ ++ + + +N ++ + + R VID
Sbjct: 299 QFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 1 MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
+VAD + V++P+G P++A++ + CAG+T Y ++ G+ KPG
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60 KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQ---AAMGTMDGIID 112
++AK G KV + + K + A +++GAD + S D DE++ +G I+
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
V+ + + LK GK+V + P + L ++ V GSL+G + E
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAF 298
Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
F A+ ++ + + +N ++ + + R VID
Sbjct: 299 QFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337
>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
pdb|1H2B|B Chain B, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
Length = 359
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 21 APLLCAGITVYSPLR-----FYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTS 75
APL AGIT Y ++ Y PG + K M +
Sbjct: 164 APLADAGITAYRAVKKAARTLY----PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV 219
Query: 76 PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIG---------- 125
+K + ERLGAD + +R +D ++ M G V+ M +G
Sbjct: 220 KEEKLKLAERLGADHVVDAR-RDPVKQVMELTRG-----RGVNVAMDFVGSQATVDYTPY 273
Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIE 185
LL G+L+++G + L P +++ GSL+G E E++ A + +R +++
Sbjct: 274 LLGRMGRLIIVGYGGE-LRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVD 332
Query: 186 VIPADYVNTAMERLAKADVRYRFVI 210
+ D +N +ERL K +V R V+
Sbjct: 333 IHKLDEINDVLERLEKGEVLGRAVL 357
>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
pdb|1R37|B Chain B, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
Length = 347
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQDEMQ-----AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD + +D +ID ++ L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGRKI-VGGSLIG 163
++G L A PL+T +I GSL+G
Sbjct: 269 MVGLFGADLHYHA-PLITLSEIQFVGSLVG 297
>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|B Chain B, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|C Chain C, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|D Chain D, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|E Chain E, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|H Chain H, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NVG|A Chain A, N249y Mutant Of The Alcohol Dehydrogenase From The
Archaeon Sulfolobus Solfataricus-tetragonal Crystal Form
Length = 347
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQDEMQ-----AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD + +D +ID + L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNYSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGRKI-VGGSLIG 163
++G L A PL+T +I GSL+G
Sbjct: 269 MVGLFGADLHYHA-PLITLSEIQFVGSLVG 297
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+G+T Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQD------EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKL 133
EA +R GAD + + QD + G D +ID ++ L +L QGK
Sbjct: 209 LEAAKRAGADYVINASSQDPVSEIRRITQGKGA-DAVIDLNNSEKTLSIYPYVLAKQGKY 267
Query: 134 VLLGAPEKPLELPAFPLLTGRKI-VGGSLIG 163
V++G L+ A PL+T ++ GSL+G
Sbjct: 268 VMVGLFGADLKYHA-PLITLNEVQFIGSLVG 297
>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
Length = 347
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQDEMQ-----AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD + +D +ID + L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNYSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGRKI-VGGSLIG 163
++G L A PL+T +I GSL+G
Sbjct: 269 MVGLFGADLHYHA-PLITLSEIQFVGSLVG 297
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQDEMQ-----AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD + +D +ID ++ L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGRKI-VGGSLIG 163
+G L A PL+T +I GSL+G
Sbjct: 269 XVGLFGADLHYHA-PLITLSEIQFVGSLVG 297
>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|3UKO|B Chain B, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|4GL4|A Chain A, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
pdb|4GL4|B Chain B, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
Length = 378
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 8 VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGV 67
V +I APLD L C T + +PG + AK G
Sbjct: 159 VAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGA 218
Query: 68 KVTVISTSPSKKSEAVERLGADSFLVSRDQDE--MQAAMGTMDGIID-------TVSAVH 118
+ SKK E ++ G + F+ +D D+ + + DG +D VS +
Sbjct: 219 SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMR 278
Query: 119 PLMPLIGLLKSQGKLVLLGAPEKPLELPA--FPLLTGRKIVGGSLIGGLKETQEM 171
+ K G V++G E+ F L+TGR + G+ GG K ++
Sbjct: 279 AALEC--CHKGWGTSVIVGVAASGQEISTRPFQLVTGR-VWKGTAFGGFKSRTQV 330
>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense
pdb|1HT0|B Chain B, Human Gamma-2 Alcohol Dehydrogense
pdb|1U3W|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Gamma-2-
Gamma-2 Isoform Complexed With N-1-Methylheptylformamide
Determined To 1.45 Angstrom Resolution
pdb|1U3W|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Gamma-2-
Gamma-2 Isoform Complexed With N-1-Methylheptylformamide
Determined To 1.45 Angstrom Resolution
Length = 374
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 18/214 (8%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V DE+ V +I +PL+ + C T Y PG
Sbjct: 151 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMG 210
Query: 62 AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID----TV 114
KA G ++ + + K ++A E LGA + +D + +Q + M DG +D +
Sbjct: 211 CKAAGAARIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVI 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQE- 170
+ +M L+ ++ G V++G P L P LLTGR G++ GG K +
Sbjct: 270 GQLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTW-KGAIFGGFKSKESV 328
Query: 171 ---MIDF-AAKHNIRADI-EVIPADYVNTAMERL 199
+ DF A K ++ A I V+P + +N + L
Sbjct: 329 PKLVADFMAKKFSLDALITNVLPFEKINEGFDLL 362
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1U3T|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
pdb|1U3T|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
Length = 374
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 20/215 (9%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V DE+ V +I +PL+ + C T Y PG
Sbjct: 151 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMG 210
Query: 62 AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID----TV 114
KA G ++ + + K ++A E LGA + +D + +Q + M DG +D +
Sbjct: 211 CKAAGAARIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVI 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQEM 171
+ +M L+ ++ G V++G P L P LLTGR G+++GG K ++E
Sbjct: 270 GRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTW-KGAILGGFK-SKEC 327
Query: 172 I-----DF-AAKHNIRADI-EVIPADYVNTAMERL 199
+ DF A K ++ A I V+P + +N + L
Sbjct: 328 VPKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDZ|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 18/214 (8%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V DE+ V +I +PL+ + C T Y PG
Sbjct: 151 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMG 210
Query: 62 AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID----TV 114
KA G ++ + + K ++A E LGA + +D + +Q + M DG +D +
Sbjct: 211 CKAAGAARIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVI 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQEM 171
+ +M L+ ++ G V++G P L P LLTGR G++ GG K + +
Sbjct: 270 GRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTW-KGAVYGGFKSKEGI 328
Query: 172 ----IDF-AAKHNIRADI-EVIPADYVNTAMERL 199
DF A K ++ A I V+P + +N + L
Sbjct: 329 PKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDY|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 18/214 (8%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V DE+ V +I +PL+ + C T Y PG
Sbjct: 151 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMG 210
Query: 62 AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID----TV 114
KA G ++ + + K ++A E LGA + +D + +Q + M DG +D +
Sbjct: 211 CKAAGAARIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVI 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQEM 171
+ +M L+ ++ G V++G P L P LLTGR G++ GG K + +
Sbjct: 270 GRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTW-KGAVYGGFKSKEGI 328
Query: 172 ----IDF-AAKHNIRADI-EVIPADYVNTAMERL 199
DF A K ++ A I V+P + +N + L
Sbjct: 329 PKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDX|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|3HUD|A Chain A, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|3HUD|B Chain B, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1U3U|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3U|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3V|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
pdb|1U3V|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
Length = 374
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 18/214 (8%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V DE+ V +I +PL+ + C T Y PG
Sbjct: 151 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMG 210
Query: 62 AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID----TV 114
KA G ++ + + K ++A E LGA + +D + +Q + M DG +D +
Sbjct: 211 CKAAGAARIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVI 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQEM 171
+ +M L+ ++ G V++G P L P LLTGR G++ GG K + +
Sbjct: 270 GRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTW-KGAVYGGFKSKEGI 328
Query: 172 ----IDF-AAKHNIRADI-EVIPADYVNTAMERL 199
DF A K ++ A I V+P + +N + L
Sbjct: 329 PKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
pdb|1HTB|B Chain B, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
Length = 374
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 18/214 (8%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V DE+ V +I +PL+ + C T Y PG
Sbjct: 151 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMG 210
Query: 62 AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID----TV 114
KA G ++ + + K ++A E LGA + +D + +Q + M DG +D +
Sbjct: 211 CKAAGAARIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVI 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQEM 171
+ +M L+ ++ G V++G P L P LLTGR G++ GG K + +
Sbjct: 270 GRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTW-KGAVYGGFKSKEGI 328
Query: 172 ----IDF-AAKHNIRADI-EVIPADYVNTAMERL 199
DF A K ++ A I V+P + +N + L
Sbjct: 329 PKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
+ A+AMG++V ++ P K + + LGA+ + E A G +D +++
Sbjct: 144 QVARAMGLRVLAAASRPEKLALPLA-LGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE 200
Query: 120 LMPLIGLLKSQGKLVLLGAPE 140
+ +GLL G+LV +GA E
Sbjct: 201 VEESLGLLAHGGRLVYIGAAE 221
>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0C|B Chain B, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0F|A Chain A, Crystal Structure Of The Binary Complex: Nadp(H)-Dependent
Vertebrate Alcohol Dehydrogenase (Adh8) With The
Cofactor Nadp
pdb|1P0F|B Chain B, Crystal Structure Of The Binary Complex: Nadp(H)-Dependent
Vertebrate Alcohol Dehydrogenase (Adh8) With The
Cofactor Nadp
Length = 373
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 62 AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTV 114
KA G ++ + T K +A+E LGA L +D D+ + G +D ++
Sbjct: 211 CKAAGASRIIGVGTHKDKFPKAIE-LGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA 269
Query: 115 SAVHPLM-PLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLK--ETQ 169
+ +M L G V+LG +P + L L LLTGR + GS+ GG K E
Sbjct: 270 GRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSL-KGSVFGGFKGEEVS 328
Query: 170 EMIDFAAKHNIRADIEV---IPADYVNTAMERLAKAD 203
++D K I + V + D +N A E L+
Sbjct: 329 RLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQ 365
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 120 LMPLIGLLKSQGKLVL--LGAPEK-PLELPAFPLL 151
L+PL GL K QG+ +L LGAPE+ L+ P LL
Sbjct: 178 LLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLL 212
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 12/155 (7%)
Query: 8 VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGV 67
V+++ E LD A +C+G T Y Y G A+++G
Sbjct: 161 VLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGA 220
Query: 68 K-VTVISTSPSKKSEAVERLGADSFLVSRD---QDEMQAAMGTMDG-----IIDTVSAVH 118
+ V VI+ SP++ A E +GAD L R+ ++ +A M G I++
Sbjct: 221 ENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSR 279
Query: 119 PLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLL 151
L+ LL+ G + G P+ P+ + L
Sbjct: 280 ALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWL 314
>pdb|2WUX|A Chain A, The Crystal Structure Of Recombinant Baculovirus Polyhedra
Length = 245
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 147 AFPLLTGRKIVGGSLIGGLKETQ--EMIDFAAKHNIRADIEVIPADYVNTAMERLAKADV 204
+FP++ ++++ L+ ++ T+ F A+H +R D + +P D + ++
Sbjct: 106 SFPIVNDQEVMDVFLVVNMRPTRPNRCYKFLAQHALRCDPDYVPHDVIRIVEPSWVGSNN 165
Query: 205 RYR 207
YR
Sbjct: 166 EYR 168
>pdb|2WUY|A Chain A, The Crystal Structure Of Wild-Type Baculovirus Polyhedra
Length = 245
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 147 AFPLLTGRKIVGGSLIGGLKETQ--EMIDFAAKHNIRADIEVIPADYVNTAMERLAKADV 204
+FP++ ++++ L+ ++ T+ F A+H +R D + +P D + ++
Sbjct: 106 SFPIVNDQEVMDVFLVVNMRPTRPNRCYKFLAQHALRCDPDYVPHDVIRIVEPSWVGSNN 165
Query: 205 RYR 207
YR
Sbjct: 166 EYR 168
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
+ A+A G++V ++ P K + + LGA+ + E A G +D +++
Sbjct: 144 QVARAXGLRVLAAASRPEKLALPLA-LGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE 200
Query: 120 LMPLIGLLKSQGKLVLLGAPE 140
+ +GLL G+LV +GA E
Sbjct: 201 VEESLGLLAHGGRLVYIGAAE 221
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 5 EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG-MXXXXXXXXXXXXXXXKFAK 63
E +V++ + + A L+ G+TV LR KPG + ++AK
Sbjct: 103 EANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAK 162
Query: 64 AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
A+G K+ +SP K + A + LGA + +D + + DG
Sbjct: 163 ALGAKLIGTVSSPEKAAHA-KALGAWETIDYSHEDVAKRVLELTDG 207
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
VS + ++ L+ ++++GK +L + E A P T +K+ GG LK TQE I
Sbjct: 23 VSERNEVLALLSRVEAKGKGIL-QQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAI 80
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
VS + ++ L+ ++++GK +L + E A P T +K+ GG LK TQE I
Sbjct: 23 VSERNEVLALLSRVEAKGKGIL-QQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAI 80
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 62 AKAMGVKVTVISTSPSKK------------SEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
AK G + T+ PSK+ SE R A F + +DE +A MG ++
Sbjct: 237 AKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVE- 295
Query: 110 IIDTVSAVHPLM-PLIGLLKSQG------KLVLLGAPEKPLELPAFPL 150
A H L+ P L + +G K +L P P+ + + P
Sbjct: 296 -----CAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPF 338
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 62 AKAMGVKVTVISTSPSKK------------SEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
AK G + T+ PSK+ SE R A F + +DE +A MG ++
Sbjct: 244 AKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVE- 302
Query: 110 IIDTVSAVHPLM-PLIGLLKSQG------KLVLLGAPEKPLELPAFPL 150
A H L+ P L + +G K +L P P+ + + P
Sbjct: 303 -----CAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPF 345
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 62 AKAMGVKVTVISTSPSKK------------SEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
AK G + T+ PSK+ SE R A F + +DE +A MG ++
Sbjct: 230 AKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFALRAFEDEKKARMGVVE- 288
Query: 110 IIDTVSAVHPLM-PLIGLLKSQG------KLVLLGAPEKPLELPAFPL 150
A H L+ P L + +G K +L P P+ + + P
Sbjct: 289 -----CAKHELLQPFNVLYEREGEFVAQFKFTVLLMPNGPMRITSGPF 331
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 164 GLKETQEMIDFAAKHNIRADIEVIPADYVNTA-MERLAKADVRYRFVIDVANTM 216
GL QE+I +++NIR I +P D ++ + + K +R + D ++TM
Sbjct: 153 GLIRLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKEMKRGREFRIIFDCSHTM 206
>pdb|2IYG|A Chain A, Dark State Structure Of The Bluf Domain Of The
Rhodobacterial Protein Appa
pdb|2IYG|B Chain B, Dark State Structure Of The Bluf Domain Of The
Rhodobacterial Protein Appa
pdb|2IYI|A Chain A, Structure Of A Light-Induced Intermediate Of The Bluf
Domain Of The Rhodobacterial Protein Appa
pdb|2IYI|B Chain B, Structure Of A Light-Induced Intermediate Of The Bluf
Domain Of The Rhodobacterial Protein Appa
Length = 124
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 177 KHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
+H++ AD+ + +D V+ + LA D+ R ++D+ T ++
Sbjct: 2 QHDLEADVTMTGSDLVSCSYRSLAAPDLTLRDLLDIVETSQA 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,609,242
Number of Sequences: 62578
Number of extensions: 210178
Number of successful extensions: 696
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 50
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)