BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027665
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 97
K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q F+NH VL+KV++VGE
Sbjct: 158 KNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGE 216
Query: 98 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXXXXXXXX 155
+ VV+R SL + + + F VS V
Sbjct: 217 SYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIREL 276
Query: 156 XXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 207
G+ LF +DII + T Q VIDIN FPGY + E+ FTD L
Sbjct: 277 SRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 324
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 97
K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q F+NH VL+KV++VGE
Sbjct: 159 KNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGE 217
Query: 98 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXXXXXXXX 155
+ VV+R SL + + + F VS V
Sbjct: 218 SYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIREL 277
Query: 156 XXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 207
G+ LF +DII + T Q VIDIN FPGY + E+ FTD L
Sbjct: 278 SRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 325
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 97
K GLT P + K VA G+ SHE ++ ++Q L ++PP V+Q F+NH VL+KV++VGE
Sbjct: 148 KNGLTFPFICKTRVAHGT-NSHEXAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGE 206
Query: 98 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXXXXXXXX 155
+ VV+R SL + + + F VS V
Sbjct: 207 SYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIREL 266
Query: 156 XXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 207
G+ LF +DII + T Q VIDIN FPGY + E+ FTD L
Sbjct: 267 SRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 314
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 41 LTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIK 100
L LP + KP A G+ +H++ + +Q + + P + Q ++NH + KV+ +G +K
Sbjct: 134 LILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLK 193
Query: 101 VVRRFSLPDVTK-------------QD-LSTSAGVFRFPRV--SCXXXXXXXXXXXPCVA 144
R SLP+V + +D LS GV + + P +
Sbjct: 194 WQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILL 253
Query: 145 XXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFT 204
G++L +D I+E+ + V+D+N FP YG +++
Sbjct: 254 NLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGNPL-VVDVNVFPSYGGKVDFDWFVE 312
Query: 205 DFLLSLTQ 212
L T+
Sbjct: 313 KVALCYTE 320
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 1 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 60
++Q V+D + S YGK L +E ++ D+V + LTL V K L+A G+ K H
Sbjct: 45 LVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLAAGAQKCHS 94
Query: 61 LSLAYD----QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS 116
+ + D S+++ E L EF ++ G + ++V + + LP +
Sbjct: 95 V-ITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLPQALAPHVD 149
Query: 117 TSAGVFRFPRVS 128
G+ RFP S
Sbjct: 150 FVGGLHRFPPTS 161
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 1 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 60
++Q V+D + S YGK L +E ++ D+V + LTL V K L+A G+ K H
Sbjct: 64 LVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLAAGAQKCHS 113
Query: 61 LSLAYD----QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS 116
+ + D S+++ E L EF ++ G + ++V + + LP +
Sbjct: 114 V-ITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLPQALAPHVD 168
Query: 117 TSAGVFRFPRVS 128
G+ RFP S
Sbjct: 169 FVGGLHRFPPTS 180
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 17 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 51
++ P+Q VIE+ + +PD+ + L +P+ PL+
Sbjct: 154 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,517,664
Number of Sequences: 62578
Number of extensions: 192058
Number of successful extensions: 366
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 11
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)