BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027666
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6H7A0|FACE2_BOVIN CAAX prenyl protease 2 OS=Bos taurus GN=RCE1 PE=2 SV=1
Length = 308
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 130 LVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVL 189
L N +IAPL EE V+R +L LA AV F VAHF F QL +
Sbjct: 165 LRNQVIAPLTEELVFRACMLPMLAPCTGLGPAVFTCPLFFGVAHFH-HIFEQLRFRQSSV 223
Query: 190 GSSYCWSGNLISSIAIHSLYN 210
GS + +G+LI + HS N
Sbjct: 224 GSIFLSAGHLIGPVLCHSFCN 244
>sp|P13974|YPRA_ECOLX Uncharacterized 24.3 kDa protein OS=Escherichia coli PE=4 SV=1
Length = 217
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 111 NPLVREILLSSDISATAIVLVNC-IIAPLLEEAVYRGFLLTSLASTMSWRN--AVVISSA 167
P + ++ I + L+ I+APL EE ++RG +L S W +I+S
Sbjct: 105 EPFMTKLFADKSIPDVILTLLTIFILAPLNEETLFRGIMLNVFRSRYCWTMWLGALITSL 164
Query: 168 IFSVAHFSIDNFL---QLFIIGCVLGSSYCWSGNLISSIAIH 206
+F AH N L +LF++G + + SG L+ + +H
Sbjct: 165 LFVAAHSQYQNLLTLAELFLVGLITSVARIRSGGLLLPVLLH 206
>sp|B0BMW8|FACE2_RAT CAAX prenyl protease 2 OS=Rattus norvegicus GN=Rce1 PE=2 SV=1
Length = 308
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 130 LVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVL 189
L N +IAPL EE V+R +L LA AV F VAHF QL +
Sbjct: 165 LRNQVIAPLTEELVFRACMLPMLAPCTGLGPAVFTCPLFFGVAHFH-HIIEQLRFRQSSV 223
Query: 190 GSSYCWSGNLISSIAIHSLYN 210
GS + +G+LI + HS N
Sbjct: 224 GSIFLSAGHLIGPVLCHSFCN 244
>sp|Q9Y256|FACE2_HUMAN CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1
Length = 329
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 130 LVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHF 174
L N +IAPL EE V+R +L LA M AV F VAHF
Sbjct: 165 LRNQVIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHF 209
>sp|O05525|YDIL_BACSU Putative membrane peptidase YdiL OS=Bacillus subtilis (strain 168)
GN=ydiL PE=3 SV=1
Length = 244
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%)
Query: 128 IVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGC 187
+++V+ I+ P+LEE ++R + +L ++ A +ISS IF + H + + L +G
Sbjct: 131 MIIVSSIVGPILEEIIFRKIIFGALYEKTNFFFAGLISSVIFGIVHADLKHLLLYTAMGF 190
Query: 188 VLGSSYCWSGNLISSIAIHSLYNASILMI 216
Y + + I H + N ++++
Sbjct: 191 TFAFLYARTKRIWVPIFAHLMMNTFVVIM 219
>sp|P57791|FACE2_MOUSE CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1
Length = 329
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 130 LVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHF 174
L N +IAPL EE V+R +L LA AV F VAHF
Sbjct: 165 LRNQVIAPLTEELVFRACMLPMLAPCTGLGPAVFTCPLFFGVAHF 209
>sp|Q1GSU5|Y1564_SPHAL UPF0061 protein Sala_1564 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=Sala_1564 PE=3 SV=1
Length = 487
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 102 RLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYR-----GFLLTSLASTM 156
R KAA P++RE L+S ++A + + A E V R G +LT +AS+
Sbjct: 118 RGGDGKAAIGPVLREFLVSEAMAAMGVPTTRALAAVTTGERVERERAHPGAVLTRVASSH 177
Query: 157 SWRNAVVISSAIFSVAHFSIDNFLQL 182
+ + + F AHF D+ +QL
Sbjct: 178 -----IRVGTFQFFAAHFGADHVVQL 198
>sp|P50730|YPBD_BACSU Uncharacterized protein YpbD OS=Bacillus subtilis (strain 168)
GN=ypbD PE=4 SV=1
Length = 189
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 92 LVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTS 151
+V LA + + F + ++ + + + S S I+ + +IA EE ++RG L T
Sbjct: 45 IVILADMAVMKWFPSHLYDDGGINKKIFSKR-SIPHIIFLTLLIA-FAEEMLFRGVLQTH 102
Query: 152 LASTMSWRNAVVISSAIFSVAHFSIDNFLQLFI----IGCVLGSSYCWSGNLISSIAIHS 207
+ + +S IF+ HF + LFI I +LG Y W+GNL + H
Sbjct: 103 IG--------LWTASLIFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHF 154
Query: 208 LYNA 211
+ +A
Sbjct: 155 IIDA 158
>sp|O92815|POL_WDSV Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1
SV=2
Length = 1752
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 131 VNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLG 190
+N I+APL +L++LA ++ W + +S+A FSV +L F G
Sbjct: 829 INNIVAPLTAVVASPTTVLSNLAPSLHWFTVIDLSNAFFSVPIHKDSQYLFAFTFE---G 885
Query: 191 SSYCWS 196
Y W+
Sbjct: 886 HQYTWT 891
>sp|Q06J59|RR3_BIGNA 30S ribosomal protein S3, chloroplastic OS=Bigelowiella natans
GN=rps3 PE=3 SV=1
Length = 246
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 105 GAKAANN--PLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRN 160
G K NN ++ I+ S DI+ A+ + C+I L +R L T L +T +N
Sbjct: 127 GNKKVNNSSKIIVNIIESPDINTNAVFIAKCLIDDLENRVPFRRALKTILDTTQKQKN 184
>sp|P45613|Y715_MYCCT Uncharacterized protein MCAP_0715 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=MCAP_0715 PE=4 SV=1
Length = 336
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 24/102 (23%)
Query: 129 VLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLF--IIG 186
+++ IAPL EE V R L T +++ + ++++SS F + H S + +F +IG
Sbjct: 240 IILTVFIAPLCEEIVARQALFTGVSNKVL---SIIVSSLYFGILHISSGDVYNIFPYVIG 296
Query: 187 CVLGS----------SYCWSGNLISSIAIHSLYN-ASILMII 217
S SYCW HS YN S+++II
Sbjct: 297 GFFFSLAFSFSKGNLSYCWLS--------HSFYNLISVVLII 330
>sp|Q38X91|AROD_LACSS 3-dehydroquinate dehydratase OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=aroD PE=3 SV=1
Length = 240
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 52 LLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGF-----AVLTSLVFLASLVADRLFGA 106
LL+ P+ DL+ T +SPA+ LLA+ F LT++ VA R+FG
Sbjct: 147 LLAMQADPDADLLKLATTAQSPADTTRLLAATQSFTHQFDKPLTTMAMSEFGVASRIFGG 206
Query: 107 K 107
+
Sbjct: 207 Q 207
>sp|Q9U1H8|FACE2_DROME CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3
Length = 302
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 132 NCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAH 173
N +IAPL EE V+R ++ + + S AV I+ F VAH
Sbjct: 152 NHVIAPLSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAH 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,338,529
Number of Sequences: 539616
Number of extensions: 2258741
Number of successful extensions: 8566
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 8550
Number of HSP's gapped (non-prelim): 45
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)