Query 027666
Match_columns 220
No_of_seqs 158 out of 1959
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 22:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 31.7 89 0.003 19.0 5.6 23 81-103 36-58 (61)
2 2wwb_B SEC61gamma, protein tra 10.9 2.3E+02 0.0079 17.5 3.0 11 52-62 21-31 (68)
3 1wn4_A Vontr protein; helix, p 10.6 90 0.0031 15.6 0.8 9 135-143 7-15 (28)
4 1rh5_B Preprotein translocase 10.5 3.4E+02 0.012 17.0 3.8 17 82-98 41-57 (74)
5 2ww9_B Protein transport prote 9.6 3.1E+02 0.011 17.5 3.3 9 83-91 55-63 (80)
6 4b1v_M Phosphatase and actin r 8.8 53 0.0018 16.9 -0.5 11 139-149 18-28 (32)
7 2wsw_A BCCT family betaine/car 8.8 2.8E+02 0.0095 24.4 3.7 65 130-194 97-167 (509)
8 1dc1_A Bsobi restriction endon 8.5 1.9E+02 0.0066 23.2 2.3 14 138-151 110-123 (323)
9 2hac_A T-cell surface glycopro 8.4 2.8E+02 0.0097 14.5 2.3 18 180-197 10-27 (33)
10 2kog_A Vesicle-associated memb 8.3 2.3E+02 0.008 19.5 2.5 32 68-99 86-117 (119)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=31.67 E-value=89 Score=18.98 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027666 81 ASALGFAVLTSLVFLASLVADRL 103 (220)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~l~~~~ 103 (220)
...+|+++...+.++..++...+
T Consensus 36 ~~~iG~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 36 ITGLGIILIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555544555555444333
No 2
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=10.92 E-value=2.3e+02 Score=17.52 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=5.2
Q ss_pred HHHHhhcCCCc
Q 027666 52 LLSRTIKPEYD 62 (220)
Q Consensus 52 ~~~~~~~~~~~ 62 (220)
++++.+||+++
T Consensus 21 ~lk~~~KPdr~ 31 (68)
T 2wwb_B 21 LVKRCTKPDRK 31 (68)
T ss_dssp HHHHCCCCCTH
T ss_pred HHHHhcCCCHH
Confidence 34445555444
No 3
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=10.63 E-value=90 Score=15.62 Aligned_cols=9 Identities=56% Similarity=0.571 Sum_probs=6.4
Q ss_pred HhhHHHHHH
Q 027666 135 IAPLLEEAV 143 (220)
Q Consensus 135 ~~pi~EEl~ 143 (220)
-+|+.||=+
T Consensus 7 sNplLEEAL 15 (28)
T 1wn4_A 7 PNHLLEEAL 15 (28)
T ss_dssp TTHHHHHHH
T ss_pred ccHHHHHHH
Confidence 468888854
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=10.51 E-value=3.4e+02 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027666 82 SALGFAVLTSLVFLASL 98 (220)
Q Consensus 82 ~~~g~~~~~~~~~~~~~ 98 (220)
..+|+++...+.++..+
T Consensus 41 ~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 41 TALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 5
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=9.55 E-value=3.1e+02 Score=17.51 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027666 83 ALGFAVLTS 91 (220)
Q Consensus 83 ~~g~~~~~~ 91 (220)
.+|+++...
T Consensus 55 ~iG~~imG~ 63 (80)
T 2ww9_B 55 GIGFIAVGI 63 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344433333
No 6
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=8.80 E-value=53 Score=16.89 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 027666 139 LEEAVYRGFLL 149 (220)
Q Consensus 139 ~EEl~fRg~l~ 149 (220)
-||++=||.+.
T Consensus 18 reelikrgvlk 28 (32)
T 4b1v_M 18 REELIKRGVLK 28 (32)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHhhhhh
Confidence 68888888653
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=8.78 E-value=2.8e+02 Score=24.37 Aligned_cols=65 Identities=5% Similarity=0.056 Sum_probs=41.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH---Hh-h--cChhHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 027666 130 LVNCIIAPLLEEAVYRGFLLTSL---AS-T--MSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYC 194 (220)
Q Consensus 130 ~~~~i~~pi~EEl~fRg~l~~~l---~~-~--~~~~~ail~ss~iF~~~H~~~~~~~~~~~~gl~~~~~y~ 194 (220)
+.+.+-+++.=-++|-|.--... .. . -+.-....-.+.-++..|........+.+.|+.+++..+
T Consensus 97 ~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~y 167 (509)
T 2wsw_A 97 IFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFF 167 (509)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 44555555555566655432221 10 0 011234566889999999988888888999999999776
No 8
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=8.55 E-value=1.9e+02 Score=23.19 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 027666 138 LLEEAVYRGFLLTS 151 (220)
Q Consensus 138 i~EEl~fRg~l~~~ 151 (220)
++||++||-.+.+.
T Consensus 110 FVdELv~RfLLtrG 123 (323)
T 1dc1_A 110 FIDELIFRYLLFQG 123 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=8.40 E-value=2.8e+02 Score=14.52 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 027666 180 LQLFIIGCVLGSSYCWSG 197 (220)
Q Consensus 180 ~~~~~~gl~~~~~y~~t~ 197 (220)
...++.|+++..+|.|-+
T Consensus 10 giL~iYgii~T~Ly~R~K 27 (33)
T 2hac_A 10 GILFIYGVILTALFLRVK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 10
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=8.34 E-value=2.3e+02 Score=19.45 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 027666 68 KTIKSPAERNWLLASALGFAVLTSLVFLASLV 99 (220)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l 99 (220)
+.+++.+|+++...++++..+++++.+++...
T Consensus 86 kl~rkmwwkn~K~~iii~~iv~iii~iIi~~~ 117 (119)
T 2kog_A 86 KLKRKYWWKNLKMMIILGVICAIILIIIIVYF 117 (119)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Done!