Query 027666
Match_columns 220
No_of_seqs 158 out of 1959
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 22:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027666.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027666hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 11.3 1.3E+02 0.0096 16.5 3.8 14 83-96 31-44 (56)
2 d1dc1a_ c.52.1.11 (A:) Restric 10.5 69 0.005 23.8 2.3 13 138-150 106-118 (319)
3 d1mtyb_ a.25.1.2 (B:) Methane 9.5 1.8E+02 0.013 22.5 4.8 33 128-160 240-272 (384)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.0 82 0.0059 18.9 0.8 8 74-81 60-67 (91)
5 d3cx5i1 f.23.14.1 (I:4-58) Sub 5.5 2.6E+02 0.019 15.1 2.9 22 148-169 3-24 (55)
6 d1nekd_ f.21.2.2 (D:) Succinat 5.4 2.7E+02 0.019 16.9 3.3 6 65-70 80-85 (113)
7 d2incb1 a.25.1.2 (B:8-329) Tol 4.8 6E+02 0.044 18.6 6.3 33 128-161 212-244 (322)
8 d1mhyb_ a.25.1.2 (B:) Methane 4.7 3.2E+02 0.023 21.0 3.8 27 128-154 238-264 (383)
9 d1ppjw_ f.23.14.1 (W:) Subunit 3.6 2.6E+02 0.019 15.5 1.8 19 148-166 9-27 (62)
10 d1xrsa_ c.1.19.4 (A:) D-lysine 3.4 2.6E+02 0.019 22.1 2.2 22 194-215 377-398 (516)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.27 E-value=1.3e+02 Score=16.47 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 027666 83 ALGFAVLTSLVFLA 96 (220)
Q Consensus 83 ~~g~~~~~~~~~~~ 96 (220)
.+|+.+...+.++.
T Consensus 31 ~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 31 ALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34443333333333
No 2
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.46 E-value=69 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 027666 138 LLEEAVYRGFLLT 150 (220)
Q Consensus 138 i~EEl~fRg~l~~ 150 (220)
++||++||-.+.+
T Consensus 106 fieElv~RfLLtr 118 (319)
T d1dc1a_ 106 FIDELIFRYLLFQ 118 (319)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5899999977664
No 3
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=9.54 E-value=1.8e+02 Score=22.47 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=24.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhH
Q 027666 128 IVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRN 160 (220)
Q Consensus 128 ~~~~~~i~~pi~EEl~fRg~l~~~l~~~~~~~~ 160 (220)
++.....+-|+.+|+++|++..+..........
T Consensus 240 ~vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~~t 272 (384)
T d1mtyb_ 240 AFSVHAVYDALFGQFVRREFFQRLAPRFGDNLT 272 (384)
T ss_dssp HHHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHH
T ss_pred HHHHHhhHHhhhHHHHHHHHHHHHHHHcCCchH
Confidence 456788889999999999998766554433333
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.02 E-value=82 Score=18.91 Aligned_cols=8 Identities=0% Similarity=-0.155 Sum_probs=3.7
Q ss_pred cchhHHHH
Q 027666 74 AERNWLLA 81 (220)
Q Consensus 74 ~~~~~~~~ 81 (220)
......+.
T Consensus 60 ~~lEi~Wt 67 (91)
T d1fftb2 60 NKVEAVVW 67 (91)
T ss_dssp SHHHHHTT
T ss_pred ceehhhHH
Confidence 33455544
No 5
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.49 E-value=2.6e+02 Score=15.10 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=13.2
Q ss_pred HHHHHHhhcChhHHHHHHHHHH
Q 027666 148 LLTSLASTMSWRNAVVISSAIF 169 (220)
Q Consensus 148 l~~~l~~~~~~~~ail~ss~iF 169 (220)
+++.+.+|.+...+.++.+.++
T Consensus 3 iY~~lfrRnSv~~~tI~~gAf~ 24 (55)
T d3cx5i1 3 LYKTFFKRNAVFVGTIFAGAFV 24 (55)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 5677778877655544444444
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.38 E-value=2.7e+02 Score=16.95 Aligned_cols=6 Identities=17% Similarity=0.750 Sum_probs=3.4
Q ss_pred cccccc
Q 027666 65 NFFKTI 70 (220)
Q Consensus 65 ~~~~~~ 70 (220)
|+.+.+
T Consensus 80 DYi~~~ 85 (113)
T d1nekd_ 80 DYVKPL 85 (113)
T ss_dssp HHCCSH
T ss_pred HhcCCh
Confidence 666543
No 7
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]}
Probab=4.82 E-value=6e+02 Score=18.59 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=21.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHH
Q 027666 128 IVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNA 161 (220)
Q Consensus 128 ~~~~~~i~~pi~EEl~fRg~l~~~l~~~~~~~~a 161 (220)
++....++-|+..|+++|++ .+..........+
T Consensus 212 ~vA~nlv~e~l~~~l~~~~l-~~~A~~nGD~~t~ 244 (322)
T d2incb1 212 FTAINLVTKPAVEEALLQQL-GSLAQSEGDTLLG 244 (322)
T ss_dssp HHHHHTTHHHHHHHHHTHHH-HHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH-HHHHHHcCCchhH
Confidence 34667788899999999996 4444443333333
No 8
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=4.67 E-value=3.2e+02 Score=20.97 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=21.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 027666 128 IVLVNCIIAPLLEEAVYRGFLLTSLAS 154 (220)
Q Consensus 128 ~~~~~~i~~pi~EEl~fRg~l~~~l~~ 154 (220)
++.....+-|+..|+++|++..+....
T Consensus 238 ~vA~NlV~e~ll~~L~~~~f~~~~Aa~ 264 (383)
T d1mhyb_ 238 LWAGHAVYDATFGQFARREFFQRLATV 264 (383)
T ss_dssp HHHHHHTHHHHHHHHHHTTTHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456678889999999999987755443
No 9
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.57 E-value=2.6e+02 Score=15.47 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=9.1
Q ss_pred HHHHHHhhcChhHHHHHHH
Q 027666 148 LLTSLASTMSWRNAVVISS 166 (220)
Q Consensus 148 l~~~l~~~~~~~~ail~ss 166 (220)
+++.+.||.+...+.++.+
T Consensus 9 lYn~lfrRnStf~~tI~~g 27 (62)
T d1ppjw_ 9 LYSLLFRRTSTFALTIVVG 27 (62)
T ss_dssp HHHHHTSSHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 4555666655443333333
No 10
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD {Clostridium sticklandii [TaxId: 1511]}
Probab=3.37 E-value=2.6e+02 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.2
Q ss_pred HhhCCchHHHHHHHHHhHHHHH
Q 027666 194 CWSGNLISSIAIHSLYNASILM 215 (220)
Q Consensus 194 ~~t~~l~~~i~~H~~~N~~~~i 215 (220)
+.++|+.-+...|.++|.++.+
T Consensus 377 ~mtgdif~~~~~~~lfnlis~l 398 (516)
T d1xrsa_ 377 FMTGNIFKGHIQDALFNMVTIM 398 (516)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 3588999999999999998865
Done!