BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027669
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
           Complexed With Ggpp
          Length = 306

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 76  GIFASLMPREEYFSKALYTFDIGQNDLGAGF 106
           G+  +LM  EEY  +AL+  ++G N+L + +
Sbjct: 37  GLLLALMKAEEYSERALHITELGINELASHY 67


>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
           Cell Polarity Proteins Inscuteable And Lgn
 pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
           Cell Polarity Proteins Inscuteable And Lgn
 pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
           Cell Polarity Proteins Inscuteable And Lgn
          Length = 406

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 113 EEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSA 162
           EEV +++   ++ +  N+  +  LG R+      G +G   Y+L NF  A
Sbjct: 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206


>pdb|2P61|A Chain A, Crystal Structure Of Protein Tm1646 From Thermotoga
           Maritima, Pfam Duf327
          Length = 162

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 109 NMSVEEVNESIPDIINKFSANVKSIYNLGAR 139
           ++ VEEVNE + D+  K   N     NL AR
Sbjct: 111 HLVVEEVNEKLMDLTEKIMKNEWQTINLAAR 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,496,610
Number of Sequences: 62578
Number of extensions: 263933
Number of successful extensions: 542
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 4
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)