Query 027669
Match_columns 220
No_of_seqs 148 out of 1203
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 13:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03156 GDSL esterase/lipase; 100.0 8.7E-47 1.9E-51 327.0 18.9 207 1-220 77-289 (351)
2 cd01837 SGNH_plant_lipase_like 100.0 1.2E-45 2.5E-50 316.5 18.6 207 1-220 49-258 (315)
3 cd01847 Triacylglycerol_lipase 100.0 3.1E-38 6.7E-43 266.5 13.4 187 1-220 37-227 (281)
4 PRK15381 pathogenicity island 100.0 8.6E-36 1.9E-40 260.6 17.5 153 26-220 197-349 (408)
5 cd01846 fatty_acyltransferase_ 100.0 7.6E-32 1.7E-36 225.9 14.3 168 24-220 54-221 (270)
6 COG3240 Phospholipase/lecithin 99.8 5.1E-19 1.1E-23 150.5 9.6 171 25-220 106-278 (370)
7 PF00657 Lipase_GDSL: GDSL-lik 99.6 2.9E-15 6.2E-20 121.4 10.8 122 88-216 81-210 (234)
8 cd01836 FeeA_FeeB_like SGNH_hy 97.1 0.0032 6.9E-08 49.6 8.3 94 89-208 67-161 (191)
9 cd01833 XynB_like SGNH_hydrola 97.0 0.0053 1.1E-07 46.7 8.7 90 89-209 40-130 (157)
10 cd01839 SGNH_arylesterase_like 97.0 0.0017 3.6E-08 52.0 6.1 96 89-209 79-180 (208)
11 cd01834 SGNH_hydrolase_like_2 97.0 0.0082 1.8E-07 46.8 9.8 101 90-214 62-163 (191)
12 cd01823 SEST_like SEST_like. A 96.8 0.019 4.1E-07 47.5 10.7 114 90-209 81-216 (259)
13 cd04506 SGNH_hydrolase_YpmR_li 96.7 0.023 4.9E-07 45.2 10.2 103 89-210 68-175 (204)
14 cd00229 SGNH_hydrolase SGNH_hy 96.7 0.018 3.9E-07 43.4 9.1 94 88-209 64-158 (187)
15 PF13472 Lipase_GDSL_2: GDSL-l 96.4 0.027 5.8E-07 42.7 8.6 95 89-210 61-155 (179)
16 cd01841 NnaC_like NnaC (CMP-Ne 96.4 0.018 3.9E-07 44.5 7.7 91 89-210 51-142 (174)
17 cd01838 Isoamyl_acetate_hydrol 96.3 0.031 6.6E-07 43.8 8.7 104 89-210 63-168 (199)
18 cd01824 Phospholipase_B_like P 96.2 0.11 2.3E-06 44.2 12.0 106 91-201 121-239 (288)
19 cd01829 SGNH_hydrolase_peri2 S 96.2 0.041 8.9E-07 43.4 8.8 94 90-210 60-155 (200)
20 cd01832 SGNH_hydrolase_like_1 96.1 0.037 8E-07 43.1 8.2 88 89-208 67-155 (185)
21 cd01828 sialate_O-acetylestera 96.1 0.036 7.9E-07 42.6 7.9 86 89-209 48-135 (169)
22 cd01827 sialate_O-acetylestera 96.1 0.072 1.6E-06 41.6 9.6 92 89-209 67-159 (188)
23 cd01820 PAF_acetylesterase_lik 95.9 0.054 1.2E-06 43.6 8.2 88 89-209 89-177 (214)
24 cd01821 Rhamnogalacturan_acety 95.8 0.056 1.2E-06 42.8 8.0 97 89-213 65-161 (198)
25 cd04501 SGNH_hydrolase_like_4 95.6 0.088 1.9E-06 40.9 8.2 92 90-211 60-151 (183)
26 cd01830 XynE_like SGNH_hydrola 95.4 0.074 1.6E-06 42.4 7.3 55 91-149 76-130 (204)
27 cd04502 SGNH_hydrolase_like_7 95.2 0.16 3.4E-06 39.1 8.3 88 89-210 50-138 (171)
28 cd01826 acyloxyacyl_hydrolase_ 94.8 0.34 7.4E-06 41.4 9.7 54 91-148 124-179 (305)
29 cd01844 SGNH_hydrolase_like_6 93.9 0.59 1.3E-05 36.2 9.0 91 89-208 57-148 (177)
30 PRK10528 multifunctional acyl- 93.5 0.26 5.7E-06 38.9 6.3 45 89-144 71-115 (191)
31 cd01835 SGNH_hydrolase_like_3 93.3 0.43 9.3E-06 37.4 7.3 93 89-210 69-161 (193)
32 KOG3035 Isoamyl acetate-hydrol 92.6 1.5 3.3E-05 35.6 9.3 103 88-210 67-177 (245)
33 cd01825 SGNH_hydrolase_peri1 S 92.6 0.51 1.1E-05 36.6 6.8 92 90-210 57-149 (189)
34 cd01822 Lysophospholipase_L1_l 91.2 1.4 3.1E-05 33.6 7.8 46 89-146 64-109 (177)
35 PLN02757 sirohydrochlorine fer 90.8 0.85 1.8E-05 35.1 6.0 55 126-205 60-114 (154)
36 cd01840 SGNH_hydrolase_yrhL_li 90.8 0.89 1.9E-05 34.3 6.1 13 90-102 51-63 (150)
37 cd01831 Endoglucanase_E_like E 86.9 4.7 0.0001 30.8 7.9 47 90-145 56-103 (169)
38 KOG3670 Phospholipase [Lipid t 85.8 5.8 0.00013 35.1 8.5 80 50-145 158-237 (397)
39 PF02633 Creatininase: Creatin 84.2 6.8 0.00015 32.1 8.0 81 95-210 62-143 (237)
40 cd03416 CbiX_SirB_N Sirohydroc 82.8 2.3 5E-05 29.7 4.1 52 127-203 47-98 (101)
41 COG3581 Uncharacterized protei 81.0 2.7 5.9E-05 37.1 4.5 48 131-205 326-373 (420)
42 PF01903 CbiX: CbiX; InterPro 80.1 1 2.2E-05 31.8 1.4 54 128-206 41-94 (105)
43 PRK13384 delta-aminolevulinic 79.3 5 0.00011 34.4 5.5 64 121-204 58-121 (322)
44 cd00384 ALAD_PBGS Porphobilino 76.3 6.7 0.00015 33.6 5.4 64 121-204 48-111 (314)
45 cd04823 ALAD_PBGS_aspartate_ri 74.7 8 0.00017 33.2 5.4 66 121-204 51-116 (320)
46 cd04824 eu_ALAD_PBGS_cysteine_ 73.2 4.7 0.0001 34.6 3.7 66 121-204 48-114 (320)
47 COG2845 Uncharacterized protei 72.9 34 0.00074 29.7 8.7 83 89-192 177-262 (354)
48 COG3240 Phospholipase/lecithin 72.3 5.2 0.00011 35.1 3.9 67 88-157 97-165 (370)
49 cd03412 CbiK_N Anaerobic cobal 71.3 14 0.0003 27.2 5.5 51 125-203 57-107 (127)
50 cd03414 CbiX_SirB_C Sirohydroc 70.9 14 0.0003 26.4 5.4 52 126-204 47-98 (117)
51 PRK09283 delta-aminolevulinic 70.8 8.5 0.00018 33.2 4.7 63 122-204 57-119 (323)
52 COG0113 HemB Delta-aminolevuli 69.3 14 0.00031 31.6 5.7 66 121-204 58-123 (330)
53 PF00490 ALAD: Delta-aminolevu 63.6 28 0.0006 30.1 6.4 65 122-204 55-119 (324)
54 COG2755 TesA Lysophospholipase 62.4 28 0.0006 27.5 6.1 14 90-103 78-91 (216)
55 KOG2794 Delta-aminolevulinic a 61.9 18 0.00038 30.6 4.8 93 89-204 39-131 (340)
56 PF06908 DUF1273: Protein of u 59.3 32 0.0007 27.0 5.8 27 119-145 24-50 (177)
57 PRK13660 hypothetical protein; 54.8 1E+02 0.0022 24.4 7.9 27 119-145 24-50 (182)
58 cd00419 Ferrochelatase_C Ferro 51.8 76 0.0016 23.6 6.5 52 127-202 80-131 (135)
59 TIGR01091 upp uracil phosphori 50.5 52 0.0011 26.4 5.8 49 125-207 137-185 (207)
60 PRK00923 sirohydrochlorin coba 50.1 21 0.00047 25.9 3.3 19 126-144 48-66 (126)
61 PF08029 HisG_C: HisG, C-termi 49.1 17 0.00037 24.4 2.3 20 127-146 53-72 (75)
62 TIGR03455 HisG_C-term ATP phos 46.1 26 0.00057 24.8 3.1 22 125-146 75-96 (100)
63 PRK13717 conjugal transfer pro 44.0 54 0.0012 24.3 4.4 27 169-195 70-96 (128)
64 PRK07807 inosine 5-monophospha 43.0 43 0.00092 30.7 4.7 53 125-207 227-279 (479)
65 COG1015 DeoB Phosphopentomutas 40.7 98 0.0021 27.4 6.2 95 93-204 239-334 (397)
66 COG4053 Uncharacterized protei 40.6 1.9E+02 0.0042 23.2 8.7 82 120-208 22-125 (244)
67 PRK00129 upp uracil phosphorib 39.9 94 0.002 24.9 5.8 48 125-206 139-186 (209)
68 PF14606 Lipase_GDSL_3: GDSL-l 39.6 1.8E+02 0.004 22.9 7.2 101 89-220 59-166 (178)
69 PF13839 PC-Esterase: GDSL/SGN 39.0 1.9E+02 0.0041 23.2 7.7 112 89-213 100-222 (263)
70 PF08331 DUF1730: Domain of un 36.7 98 0.0021 20.5 4.6 66 135-203 8-77 (78)
71 KOG4079 Putative mitochondrial 36.6 15 0.00033 27.6 0.6 16 135-150 42-57 (169)
72 cd03411 Ferrochelatase_N Ferro 36.4 40 0.00087 25.7 3.0 24 126-149 101-124 (159)
73 TIGR01417 PTS_I_fam phosphoeno 36.0 1.1E+02 0.0023 28.8 6.2 15 91-105 444-458 (565)
74 TIGR02744 TrbI_Ftype type-F co 34.4 94 0.002 22.6 4.4 27 169-195 57-83 (112)
75 PF07555 NAGidase: beta-N-acet 33.1 1.8E+02 0.0038 25.1 6.7 25 120-144 87-111 (306)
76 PRK08194 tartrate dehydrogenas 32.9 45 0.00098 29.3 3.1 36 184-219 198-233 (352)
77 PRK03437 3-isopropylmalate deh 32.6 57 0.0012 28.6 3.6 36 184-219 198-233 (344)
78 KOG0907 Thioredoxin [Posttrans 32.3 75 0.0016 22.6 3.6 28 184-212 40-67 (106)
79 cd03413 CbiK_C Anaerobic cobal 32.3 51 0.0011 23.3 2.8 17 127-143 45-61 (103)
80 cd03415 CbiX_CbiC Archaeal sir 32.3 42 0.0009 24.8 2.4 19 126-144 46-64 (125)
81 PF07318 DUF1464: Protein of u 31.8 2.6E+02 0.0055 24.6 7.4 75 126-207 90-164 (343)
82 COG1031 Uncharacterized Fe-S o 31.7 1.2E+02 0.0027 27.7 5.6 70 124-207 218-287 (560)
83 PLN00123 isocitrate dehydrogen 31.7 77 0.0017 28.0 4.2 36 184-219 206-241 (360)
84 PF02896 PEP-utilizers_C: PEP- 31.6 1.2E+02 0.0027 25.8 5.4 18 90-107 196-213 (293)
85 TIGR02089 TTC tartrate dehydro 31.6 69 0.0015 28.1 4.0 36 184-219 201-236 (352)
86 smart00340 HALZ homeobox assoc 30.4 54 0.0012 19.4 2.1 17 177-193 18-34 (44)
87 PRK06520 5-methyltetrahydropte 30.2 77 0.0017 27.9 4.1 31 115-145 161-191 (368)
88 TIGR00175 mito_nad_idh isocitr 29.3 81 0.0018 27.5 4.0 37 183-219 182-218 (333)
89 COG0276 HemH Protoheme ferro-l 29.2 1.7E+02 0.0038 25.3 5.9 23 127-149 105-127 (320)
90 PRK00772 3-isopropylmalate deh 29.1 98 0.0021 27.3 4.5 38 182-219 200-237 (358)
91 cd03409 Chelatase_Class_II Cla 28.8 77 0.0017 21.6 3.2 23 127-149 48-70 (101)
92 PRK06233 hypothetical protein; 28.6 85 0.0018 27.7 4.1 31 115-145 162-192 (372)
93 COG1903 CbiD Cobalamin biosynt 28.5 4.2E+02 0.0091 23.5 9.3 90 32-148 167-258 (367)
94 PRK08997 isocitrate dehydrogen 28.5 1E+02 0.0022 26.9 4.4 36 184-219 185-220 (334)
95 COG1402 Uncharacterized protei 28.3 81 0.0018 26.3 3.7 25 122-146 88-112 (250)
96 COG0533 QRI7 Metal-dependent p 28.2 2.9E+02 0.0062 24.3 7.1 56 117-203 240-296 (342)
97 PF14681 UPRTase: Uracil phosp 28.1 1.9E+02 0.0041 23.1 5.7 46 125-204 136-183 (207)
98 PF00180 Iso_dh: Isocitrate/is 28.0 95 0.0021 27.2 4.3 36 184-219 197-233 (348)
99 PLN02541 uracil phosphoribosyl 27.8 1.3E+02 0.0028 25.0 4.8 50 125-208 172-223 (244)
100 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 27.7 48 0.001 20.4 1.7 14 206-219 35-48 (50)
101 PLN00118 isocitrate dehydrogen 27.6 94 0.002 27.6 4.1 38 182-219 220-257 (372)
102 COG0556 UvrB Helicase subunit 27.1 50 0.0011 30.8 2.4 63 135-207 29-98 (663)
103 PRK00035 hemH ferrochelatase; 26.8 1.4E+02 0.0029 25.7 5.0 44 126-185 250-293 (333)
104 TIGR00169 leuB 3-isopropylmala 26.7 1.1E+02 0.0025 26.8 4.5 36 184-219 199-234 (349)
105 cd01823 SEST_like SEST_like. A 26.2 1.5E+02 0.0032 24.0 4.9 39 170-208 120-158 (259)
106 PF08885 GSCFA: GSCFA family; 25.9 2.5E+02 0.0054 23.4 6.2 116 89-218 101-232 (251)
107 PRK11177 phosphoenolpyruvate-p 25.0 2.1E+02 0.0045 27.0 6.1 17 90-106 444-460 (575)
108 cd04506 SGNH_hydrolase_YpmR_li 24.9 2.2E+02 0.0047 22.0 5.6 33 173-205 98-130 (204)
109 PRK13276 cell wall biosynthesi 24.5 77 0.0017 26.0 2.9 71 118-213 7-84 (224)
110 cd04236 AAK_NAGS-Urea AAK_NAGS 24.4 3E+02 0.0066 23.2 6.5 45 89-148 34-78 (271)
111 PRK14025 multifunctional 3-iso 23.8 1.3E+02 0.0029 26.1 4.3 38 182-219 180-217 (330)
112 PRK09121 5-methyltetrahydropte 23.8 1.2E+02 0.0026 26.4 4.1 30 115-144 147-176 (339)
113 PF14294 DUF4372: Domain of un 23.2 88 0.0019 20.9 2.5 22 119-140 55-76 (76)
114 cd02989 Phd_like_TxnDC9 Phosdu 23.2 1.4E+02 0.003 21.2 3.8 24 184-207 41-64 (113)
115 PRK09240 thiH thiamine biosynt 22.9 2.5E+02 0.0055 24.6 6.0 27 123-149 106-133 (371)
116 COG0035 Upp Uracil phosphoribo 22.4 2.4E+02 0.0053 22.9 5.2 48 125-206 139-187 (210)
117 TIGR02351 thiH thiazole biosyn 22.1 2.3E+02 0.005 24.8 5.6 26 123-148 105-131 (366)
118 PTZ00340 O-sialoglycoprotein e 21.9 5.3E+02 0.011 22.6 7.7 24 179-203 275-298 (345)
119 cd02957 Phd_like Phosducin (Ph 21.6 2.1E+02 0.0046 19.9 4.5 25 183-207 42-66 (113)
120 PF02065 Melibiase: Melibiase; 21.6 5E+02 0.011 23.2 7.6 69 120-203 165-234 (394)
121 PRK12435 ferrochelatase; Provi 20.7 3.8E+02 0.0083 23.0 6.5 23 127-149 93-115 (311)
122 PF09677 TrbI_Ftype: Type-F co 20.2 2.4E+02 0.0052 20.3 4.4 25 170-194 57-81 (111)
123 PLN02329 3-isopropylmalate deh 20.2 82 0.0018 28.3 2.4 35 185-219 248-282 (409)
No 1
>PLN03156 GDSL esterase/lipase; Provisional
Probab=100.00 E-value=8.7e-47 Score=327.00 Aligned_cols=207 Identities=29% Similarity=0.475 Sum_probs=175.5
Q ss_pred CceecccCCC-CCCCCCCCcC--CCCcCCCchhhhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCC
Q 027669 1 MEISAQSFDL-PYISAYLNSL--GTNFSHGANFATAASTIRLPTRIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGI 77 (220)
Q Consensus 1 ~Dfia~~lGl-~~~ppyl~~~--~~~~~~G~NfA~gGA~~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~ 77 (220)
+||||+.||+ |++|||+++. +.++.+|+|||+||||+++.+... ...+++.+||++|+++++++....|..
T Consensus 77 ~D~iA~~lGl~p~~ppyl~~~~~~~~~~~GvNFA~agag~~~~~~~~----~~~~~l~~Qv~~F~~~~~~l~~~~g~~-- 150 (351)
T PLN03156 77 PDFISEAFGLKPAIPAYLDPSYNISDFATGVCFASAGTGYDNATSDV----LSVIPLWKELEYYKEYQTKLRAYLGEE-- 150 (351)
T ss_pred hhhHHHHhCCCCCCCCCcCcccCchhhcccceeecCCccccCCCccc----cCccCHHHHHHHHHHHHHHHHHhhChH--
Confidence 5999999999 8899999752 467999999999999998766521 135789999999999988776555422
Q ss_pred cCCCCcHHHhcCCceEEEEechhhhhhhhcCC--C-ChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchh
Q 027669 78 FASLMPREEYFSKALYTFDIGQNDLGAGFFGN--M-SVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPY 154 (220)
Q Consensus 78 ~~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~~--~-~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~ 154 (220)
.+.+.++++||+||||+|||+.+|+.. . ....+.+|++.+++.+.+.|++||++|||||+|+|+||+||+|.
T Consensus 151 -----~~~~~~~~sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~GAR~~~V~~lpplGc~P~ 225 (351)
T PLN03156 151 -----KANEIISEALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRLGARKISLGGLPPMGCLPL 225 (351)
T ss_pred -----HHHHHHhcCeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCHH
Confidence 245668999999999999998655321 1 11246789999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccCC
Q 027669 155 ILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYGS 220 (220)
Q Consensus 155 ~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yGf 220 (220)
.+... ..+..+|.+.+|.+++.||.+|+.+|++|++++||++|+++|+|+++.++++||++|||
T Consensus 226 ~~~~~--~~~~~~C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf 289 (351)
T PLN03156 226 ERTTN--LMGGSECVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGF 289 (351)
T ss_pred HHhhc--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCc
Confidence 77542 22456899999999999999999999999999999999999999999999999999997
No 2
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=100.00 E-value=1.2e-45 Score=316.51 Aligned_cols=207 Identities=34% Similarity=0.640 Sum_probs=176.7
Q ss_pred CceecccCCCCC-CCCCCCcC-CCCcCCCchhhhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCc
Q 027669 1 MEISAQSFDLPY-ISAYLNSL-GTNFSHGANFATAASTIRLPTRIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGIF 78 (220)
Q Consensus 1 ~Dfia~~lGl~~-~ppyl~~~-~~~~~~G~NfA~gGA~~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~ 78 (220)
+||||+.||+|. +|||+... +.++.+|+|||+|||++.+.+... ..+++|.+||++|+++++++....|..
T Consensus 49 ~d~la~~lgl~~~~p~~~~~~~~~~~~~G~NfA~gGA~~~~~~~~~----~~~~~l~~Qv~~F~~~~~~~~~~~g~~--- 121 (315)
T cd01837 49 IDFIAEALGLPLLPPPYLSPNGSSDFLTGVNFASGGAGILDSTGFL----GSVISLSVQLEYFKEYKERLRALVGEE--- 121 (315)
T ss_pred hhhhhhhccCCCCCCCccCccccchhhccceecccCCccccCCcce----eeeecHHHHHHHHHHHHHHHHHhhCHH---
Confidence 599999999997 77777653 247899999999999999876431 246899999999999988776555532
Q ss_pred CCCCcHHHhcCCceEEEEechhhhhhhhcCCCC-hhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhh
Q 027669 79 ASLMPREEYFSKALYTFDIGQNDLGAGFFGNMS-VEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILA 157 (220)
Q Consensus 79 ~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~-~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~ 157 (220)
.+.+..+++||+||||+|||+..+....+ ..+..++++.+++++.++|++||++|||||+|+|+||+||+|.++.
T Consensus 122 ----~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~L~~~GAr~~~v~~lpplgc~P~~~~ 197 (315)
T cd01837 122 ----AAADILSKSLFLISIGSNDYLNNYFANPTRQYEVEAYVPFLVSNISSAIKRLYDLGARKFVVPGLGPLGCLPSQRT 197 (315)
T ss_pred ----HHHHHHhCCEEEEEecccccHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEecCCCCcCccHHHHh
Confidence 24567899999999999999976543322 2345789999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccCC
Q 027669 158 NFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYGS 220 (220)
Q Consensus 158 ~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yGf 220 (220)
..+ .+..+|.+.+|++++.||.+|+++|++|++++||++|+++|+|++++++++||++|||
T Consensus 198 ~~~--~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~yGf 258 (315)
T cd01837 198 LFG--GDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKYGF 258 (315)
T ss_pred hcC--CCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhcCC
Confidence 632 2456899999999999999999999999999999999999999999999999999997
No 3
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=100.00 E-value=3.1e-38 Score=266.54 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=154.0
Q ss_pred CceecccCCCCCCCCCCCcCCCCcCCCchhhhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCcCC
Q 027669 1 MEISAQSFDLPYISAYLNSLGTNFSHGANFATAASTIRLPTRIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGIFAS 80 (220)
Q Consensus 1 ~Dfia~~lGl~~~ppyl~~~~~~~~~G~NfA~gGA~~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~~~ 80 (220)
+|++|+.+|++++ ++..+.++.+|+|||+|||++.+.+..... ....++|.+||++|++.+.
T Consensus 37 ~d~~~~~~~~~~~---~~~~~~~~~~G~NfA~gGa~~~~~~~~~~~-~~~~~~l~~Qv~~f~~~~~-------------- 98 (281)
T cd01847 37 IWSLGVAEGYGLT---TGTATPTTPGGTNYAQGGARVGDTNNGNGA-GAVLPSVTTQIANYLAAGG-------------- 98 (281)
T ss_pred hHHHHHHHHcCCC---cCcCcccCCCCceeeccCccccCCCCcccc-ccCCCCHHHHHHHHHHhcC--------------
Confidence 5899999998764 233346789999999999999986542100 0135799999999986431
Q ss_pred CCcHHHhcCCceEEEEechhhhhhhhcCCCC----hhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhh
Q 027669 81 LMPREEYFSKALYTFDIGQNDLGAGFFGNMS----VEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYIL 156 (220)
Q Consensus 81 ~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~----~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~ 156 (220)
...+++||+||||+|||+..+....+ ..++.++++.+++++..++++||++|||+|+|+|+||+||+|.++
T Consensus 99 -----~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~GAr~ilv~~lpplgc~P~~~ 173 (281)
T cd01847 99 -----GFDPNALYTVWIGGNDLIAALAALTTATTTQAAAVAAAATAAADLASQVKNLLDAGARYILVPNLPDVSYTPEAA 173 (281)
T ss_pred -----CCCCCeEEEEecChhHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcccCcchh
Confidence 12589999999999999976533222 134668999999999999999999999999999999999999987
Q ss_pred hcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccCC
Q 027669 157 ANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYGS 220 (220)
Q Consensus 157 ~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yGf 220 (220)
... ..|.+.+|+++..||.+|+.+|++|+.+ +|+++|+|++++++++||++|||
T Consensus 174 ~~~------~~~~~~~n~~~~~~N~~L~~~l~~l~~~----~i~~~D~~~~~~~i~~nP~~yGf 227 (281)
T cd01847 174 GTP------AAAAALASALSQTYNQTLQSGLNQLGAN----NIIYVDTATLLKEVVANPAAYGF 227 (281)
T ss_pred hcc------chhHHHHHHHHHHHHHHHHHHHHhccCC----eEEEEEHHHHHHHHHhChHhcCc
Confidence 652 3799999999999999999999998754 89999999999999999999998
No 4
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=100.00 E-value=8.6e-36 Score=260.65 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=129.0
Q ss_pred CCchhhhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcHHHhcCCceEEEEechhhhhhh
Q 027669 26 HGANFATAASTIRLPTRIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGIFASLMPREEYFSKALYTFDIGQNDLGAG 105 (220)
Q Consensus 26 ~G~NfA~gGA~~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~~ 105 (220)
+|+|||+||||++....... .+...++|.+||++|.. .+++||+||+|+|||+.
T Consensus 197 ~G~NFA~GGA~~~t~~~~~~-~~~~~~~L~~Qv~~~~~------------------------~~~aL~lV~iG~NDy~~- 250 (408)
T PRK15381 197 EMLNFAEGGSTSASYSCFNC-IGDFVSNTDRQVASYTP------------------------SHQDLAIFLLGANDYMT- 250 (408)
T ss_pred CCceEeeccccccccccccc-ccCccCCHHHHHHHHHh------------------------cCCcEEEEEeccchHHH-
Confidence 79999999999983211100 00124789999998532 15799999999999983
Q ss_pred hcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 027669 106 FFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKE 185 (220)
Q Consensus 106 ~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~ 185 (220)
+ ..++++.+|+++.++|++||++|||||+|+|+||+||+|..+.. .+.+.+|.++..||.+|+.
T Consensus 251 ~--------~~~~v~~vV~~~~~~l~~Ly~lGARk~vV~nlpPlGC~P~~~~~--------~~~~~~N~~a~~fN~~L~~ 314 (408)
T PRK15381 251 L--------HKDNVIMVVEQQIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHS--------DEKRKLKDESIAHNALLKT 314 (408)
T ss_pred h--------HHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcchhhcc--------CchHHHHHHHHHHHHHHHH
Confidence 3 12467889999999999999999999999999999999988743 2357899999999999999
Q ss_pred HHHHHHHhCCCcEEEEEecchHHHHHHhCccccCC
Q 027669 186 AVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYGS 220 (220)
Q Consensus 186 ~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yGf 220 (220)
+|++|++++||++|+++|+|+++.++++||++|||
T Consensus 315 ~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF 349 (408)
T PRK15381 315 NVEELKEKYPQHKICYYETADAFKVIMEAASNIGY 349 (408)
T ss_pred HHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCC
Confidence 99999999999999999999999999999999998
No 5
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.98 E-value=7.6e-32 Score=225.92 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=140.0
Q ss_pred cCCCchhhhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcHHHhcCCceEEEEechhhhh
Q 027669 24 FSHGANFATAASTIRLPTRIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGIFASLMPREEYFSKALYTFDIGQNDLG 103 (220)
Q Consensus 24 ~~~G~NfA~gGA~~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~ 103 (220)
..+|+|||+|||++.+...... .....++.+||++|.+..+. +..+++|++|++|+||+.
T Consensus 54 ~~~~~N~A~~Ga~~~~~~~~~~--~~~~~~l~~Qv~~f~~~~~~------------------~~~~~~l~~i~~G~ND~~ 113 (270)
T cd01846 54 LKQGYNYAVGGATAGAYNVPPY--PPTLPGLSDQVAAFLAAHKL------------------RLPPDTLVAIWIGANDLL 113 (270)
T ss_pred cCCcceeEecccccCCcccCCC--CCCCCCHHHHHHHHHHhccC------------------CCCCCcEEEEEeccchhh
Confidence 3589999999999987654211 12357999999999875431 225789999999999998
Q ss_pred hhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 027669 104 AGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKL 183 (220)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L 183 (220)
..+.. ......+++.+++++.+.|++|+++|+|+|+|+++||+||+|.++.... . ..+.+|.+++.||.+|
T Consensus 114 ~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~g~~~i~v~~~p~~~~~P~~~~~~~--~----~~~~~~~~~~~~N~~L 184 (270)
T cd01846 114 NALDL---PQNPDTLVTRAVDNLFQALQRLYAAGARNFLVLNLPDLGLTPAFQAQGD--A----VAARATALTAAYNAKL 184 (270)
T ss_pred hhccc---cccccccHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccCCc--c----cHHHHHHHHHHHHHHH
Confidence 75322 1233467889999999999999999999999999999999999886631 1 1268999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccCC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYGS 220 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yGf 220 (220)
++++++|++++|+++|+++|+|+++.++++||+.|||
T Consensus 185 ~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf 221 (270)
T cd01846 185 AEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGF 221 (270)
T ss_pred HHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCC
Confidence 9999999999999999999999999999999999997
No 6
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=99.78 E-value=5.1e-19 Score=150.47 Aligned_cols=171 Identities=20% Similarity=0.195 Sum_probs=128.2
Q ss_pred CCCchhhhcCCCCCCCC-CCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcHHHhcCCceEEEEechhhhh
Q 027669 25 SHGANFATAASTIRLPT-RIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGIFASLMPREEYFSKALYTFDIGQNDLG 103 (220)
Q Consensus 25 ~~G~NfA~gGA~~~~~~-~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~ 103 (220)
..|.|||+|||++.... +... +....++.+|+.+|.......- ..+. .+.-..-...|+.+|.|+|||+
T Consensus 106 a~gnd~A~gga~~~~~~~~~~i--~~~~~~~~~Qv~~~l~a~~~~~--v~~~------~~~~~l~p~~l~~~~ggand~~ 175 (370)
T COG3240 106 AGGNDLAVGGARSTEPNTGNSI--GASATSLAQQVGAFLAAGQGGF--VWPN------YPAQGLDPSALYFLWGGANDYL 175 (370)
T ss_pred cccccHhhhccccccccccccc--cccccchHHHHHHHHHhcCCcc--cccc------ccccccCHHHHHHHhhcchhhh
Confidence 68999999999987654 1111 2356799999999987544210 0000 1111223577899999999998
Q ss_pred hhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCch-HHHHHHHHHHHH
Q 027669 104 AGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAK-PYNEVAKNFNLK 182 (220)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~-~~n~~~~~~N~~ 182 (220)
..- .........+.......+...|++|.+.|||+++|+++|+++.+|..... +-.. .+.+++..||..
T Consensus 176 ~~~--~~~a~~~q~~~~~~~~~~~~~Vq~L~~AGA~~i~v~~lpDl~l~P~~~~~--------~~~~~~a~~~t~~~Na~ 245 (370)
T COG3240 176 ALP--MLKAAAYQQLEGSTKADQSSAVQRLIAAGARNILVMTLPDLSLTPAGKAY--------GTEAIQASQATIAFNAS 245 (370)
T ss_pred ccc--ccchhhhHHHhcchhhHHHHHHHHHHHhhccEEEEeeccccccccccccc--------cchHHHHHHHHHHHHHH
Confidence 641 11112223344555678999999999999999999999999999988754 2223 778999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccCC
Q 027669 183 LKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYGS 220 (220)
Q Consensus 183 L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yGf 220 (220)
|+..|++++ .+|+.+|+|.++++++.||++|||
T Consensus 246 L~~~L~~~g-----~nIi~iD~~~llk~im~nPa~fGl 278 (370)
T COG3240 246 LTSQLEQLG-----GNIIRIDTYTLLKEIMTNPAEFGL 278 (370)
T ss_pred HHHHHHHhc-----CcEEEeEhHHHHHHHHhCHHhcCc
Confidence 999999875 799999999999999999999997
No 7
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.62 E-value=2.9e-15 Score=121.41 Aligned_cols=122 Identities=34% Similarity=0.598 Sum_probs=100.3
Q ss_pred cCCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCe-----EEEEccCCCCccchhhhhcCCCC
Q 027669 88 FSKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGAR-----SFWIHNTGPIGCLPYILANFPSA 162 (220)
Q Consensus 88 ~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr-----~~~V~~lpplGc~P~~~~~~~~~ 162 (220)
.+.+|++|++|+||++.. ... ......++.+++.+.+.+++|++.|+| +++++++||++|.|......
T Consensus 81 ~~~~lv~i~~G~ND~~~~--~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (234)
T PF00657_consen 81 YDPDLVVIWIGTNDYFNN--RDS--SDNNTSVEEFVENLRNAIKRLRSNGARLIIVANIVVINLPPIGCLPAWSSNN--- 153 (234)
T ss_dssp HTTSEEEEE-SHHHHSSC--CSC--STTHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEHHC-GGGSTTHHHTH---
T ss_pred CCcceEEEecccCcchhh--ccc--chhhhhHhhHhhhhhhhhhHHhccCCcccccccccccccccccccccccccc---
Confidence 467899999999998741 111 122455678899999999999999999 99999999999999877652
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEecchHHHHH--HhCcc
Q 027669 163 KDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFP-SAAFTYVDVYSVKYSL--FRNPK 216 (220)
Q Consensus 163 ~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~-g~~i~~~D~y~~~~~i--i~nP~ 216 (220)
.+...|.+.++..+..||..|++++.+|++.++ +.++.++|+++.+.+. ..+|.
T Consensus 154 ~~~~~~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~ 210 (234)
T PF00657_consen 154 KDSASCIERLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPE 210 (234)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGG
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcc
Confidence 345689999999999999999999999988776 8899999999999998 66664
No 8
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.11 E-value=0.0032 Score=49.57 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH-hCCeEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYN-LGARSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~-~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
.-.+.+|.+|+||.... .+ ..+...++.+.++++.+ ....+|+|.++||.++.|.... .
T Consensus 67 ~pd~Vii~~G~ND~~~~----~~-------~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~---------~ 126 (191)
T cd01836 67 RFDVAVISIGVNDVTHL----TS-------IARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQ---------P 126 (191)
T ss_pred CCCEEEEEecccCcCCC----CC-------HHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcH---------H
Confidence 44789999999997642 11 23445555666666665 3567899999999887653211 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVK 208 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~ 208 (220)
+...+++....+|..+++. ..+++ .+.++|++..+
T Consensus 127 ~~~~~~~~~~~~n~~~~~~----a~~~~--~~~~id~~~~~ 161 (191)
T cd01836 127 LRWLLGRRARLLNRALERL----ASEAP--RVTLLPATGPL 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhcCC--CeEEEecCCcc
Confidence 1223445556666666544 33333 56677988876
No 9
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.04 E-value=0.0053 Score=46.71 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGA-RSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GA-r~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
+-++++|.+|+||.... .+ .+....++.+.++++.+.+- -++++.+++|..-. .
T Consensus 40 ~pd~vvi~~G~ND~~~~----~~-------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~--------------~ 94 (157)
T cd01833 40 KPDVVLLHLGTNDLVLN----RD-------PDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDA--------------S 94 (157)
T ss_pred CCCEEEEeccCcccccC----CC-------HHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc--------------c
Confidence 45789999999998642 11 23455566666777766532 23556666553211 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
.+.....||..+++..++.+.. +..+.++|++..+.
T Consensus 95 ----~~~~~~~~n~~l~~~~~~~~~~--~~~v~~vd~~~~~~ 130 (157)
T cd01833 95 ----GNARIAEYNAAIPGVVADLRTA--GSPVVLVDMSTGYT 130 (157)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhcC--CCCEEEEecCCCCC
Confidence 1577889999999998886543 66899999998875
No 10
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.03 E-value=0.0017 Score=52.05 Aligned_cols=96 Identities=26% Similarity=0.235 Sum_probs=56.1
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHh------CCeEEEEccCCCCccchhhhhcCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNL------GARSFWIHNTGPIGCLPYILANFPSA 162 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~------GAr~~~V~~lpplGc~P~~~~~~~~~ 162 (220)
.-++++|++|+||+...+ ..+. +....++.+.++.+.+. +..++++++.||+-..+...
T Consensus 79 ~pd~vii~lGtND~~~~~--~~~~-------~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~~~------ 143 (208)
T cd01839 79 PLDLVIIMLGTNDLKSYF--NLSA-------AEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKGSL------ 143 (208)
T ss_pred CCCEEEEecccccccccc--CCCH-------HHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCccccch------
Confidence 457899999999986421 1222 23333444444544443 56788998888872221111
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 163 KDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 163 ~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
..+....|...+.||..+++..++. ++.++|+++++.
T Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~iD~~~~~~ 180 (208)
T cd01839 144 ---AGKFAGAEEKSKGLADAYRALAEEL-------GCHFFDAGSVGS 180 (208)
T ss_pred ---hhhhccHHHHHHHHHHHHHHHHHHh-------CCCEEcHHHHhc
Confidence 1233345677778887776554432 367889877653
No 11
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.00 E-value=0.0082 Score=46.78 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=61.8
Q ss_pred CceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHH-HhCCeEEEEccCCCCccchhhhhcCCCCCCCCCC
Q 027669 90 KALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIY-NLGARSFWIHNTGPIGCLPYILANFPSAKDSAGC 168 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~-~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c 168 (220)
-.+++|++|+||......... ...+...++.+.|+.+. .....+|++++.+|....+.. ..-
T Consensus 62 ~d~v~l~~G~ND~~~~~~~~~-------~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~----------~~~ 124 (191)
T cd01834 62 PDVVSIMFGINDSFRGFDDPV-------GLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDP----------LPD 124 (191)
T ss_pred CCEEEEEeecchHhhcccccc-------cHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCC----------CCC
Confidence 469999999999975321011 12445566666677774 344567777776654322110 001
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHhC
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRN 214 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~n 214 (220)
....+.....+|..|++..++ + ++.++|++..+.+....
T Consensus 125 ~~~~~~~~~~~n~~l~~~a~~----~---~~~~iD~~~~~~~~~~~ 163 (191)
T cd01834 125 GAEYNANLAAYADAVRELAAE----N---GVAFVDLFTPMKEAFQK 163 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----c---CCeEEecHHHHHHHHHh
Confidence 245667778888888765432 2 48899999998876543
No 12
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=96.80 E-value=0.019 Score=47.50 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=60.6
Q ss_pred CceEEEEechhhhhhhhc-----CCC-----------ChhhhhhhHHHHHHHHHHHHHHHHHh-CCeEEEEccCCCCccc
Q 027669 90 KALYTFDIGQNDLGAGFF-----GNM-----------SVEEVNESIPDIINKFSANVKSIYNL-GARSFWIHNTGPIGCL 152 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~-----~~~-----------~~~~~~~~~~~~v~~~~~~i~~L~~~-GAr~~~V~~lpplGc~ 152 (220)
-.+.+|.+|+||+..... ... .........+....++.+.+++|.+. .--+|+|++.|++-
T Consensus 81 ~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~-- 158 (259)
T cd01823 81 TDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLF-- 158 (259)
T ss_pred CCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccc--
Confidence 578999999999854211 000 00111223445566666677777643 34568899987642
Q ss_pred hhhhhcCCC-----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 153 PYILANFPS-----AKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 153 P~~~~~~~~-----~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
|.-...... ..-...+...+++....+|..+++..+ ++...++.|+|++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~----~~~~~~v~fvD~~~~f~ 216 (259)
T cd01823 159 PPDGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAA----DAGDYKVRFVDTDAPFA 216 (259)
T ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HhCCceEEEEECCCCcC
Confidence 100000000 000001224556666777766655443 34346799999998775
No 13
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=96.71 E-value=0.023 Score=45.19 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCceEEEEechhhhhhhhcCCC---ChhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEEEccCC-CCccchhhhhcCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNM---SVEEVNESIPDIINKFSANVKSIYNLGA-RSFWIHNTG-PIGCLPYILANFPSAK 163 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~---~~~~~~~~~~~~v~~~~~~i~~L~~~GA-r~~~V~~lp-plGc~P~~~~~~~~~~ 163 (220)
.-.+++|.+|+||+........ .......-......++.+.|+++.+.+. .+|+|++++ |... ..
T Consensus 68 ~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~-----~~----- 137 (204)
T cd04506 68 KADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYV-----YF----- 137 (204)
T ss_pred cCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcccc-----cc-----
Confidence 3468999999999976432111 1112222334566677777777777653 356777653 3211 00
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 164 DSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 164 d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
.-....++.+..||..+++...+ + -++.++|++..+.+
T Consensus 138 ---~~~~~~~~~~~~~n~~~~~~a~~----~--~~v~~vd~~~~~~~ 175 (204)
T cd04506 138 ---PNITEINDIVNDWNEASQKLASQ----Y--KNAYFVPIFDLFSD 175 (204)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHh----C--CCeEEEehHHhhcC
Confidence 01124577888888777665432 2 24788899887664
No 14
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=96.67 E-value=0.018 Score=43.36 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=58.4
Q ss_pred cCCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH-hCCeEEEEccCCCCccchhhhhcCCCCCCCC
Q 027669 88 FSKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYN-LGARSFWIHNTGPIGCLPYILANFPSAKDSA 166 (220)
Q Consensus 88 ~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~-~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~ 166 (220)
.+..++++.+|+||+.... ..+ .....+.+.+.++.+.+ ....+|++++.||.++.|.
T Consensus 64 ~~~d~vil~~G~ND~~~~~--~~~-------~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~------------ 122 (187)
T cd00229 64 DKPDLVIIELGTNDLGRGG--DTS-------IDEFKANLEELLDALRERAPGAKVILITPPPPPPREG------------ 122 (187)
T ss_pred CCCCEEEEEeccccccccc--ccC-------HHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch------------
Confidence 3567999999999986421 111 12333344444555543 6678888888888776653
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 167 GCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 167 ~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
..+.....+|..+++..++.... ..+.++|++..+.
T Consensus 123 ----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~ 158 (187)
T cd00229 123 ----LLGRALPRYNEAIKAVAAENPAP---SGVDLVDLAALLG 158 (187)
T ss_pred ----hhHHHHHHHHHHHHHHHHHcCCC---cceEEEEhhhhhC
Confidence 12244566777766655544321 4588899998775
No 15
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=96.42 E-value=0.027 Score=42.72 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=58.9
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGC 168 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c 168 (220)
.-.+++|.+|+||.... ... ....+.....+.+.++.+...+ +++++++||.+-.+.. .|
T Consensus 61 ~~d~vvi~~G~ND~~~~---~~~----~~~~~~~~~~l~~~i~~~~~~~--~vi~~~~~~~~~~~~~-----------~~ 120 (179)
T PF13472_consen 61 KPDLVVISFGTNDVLNG---DEN----DTSPEQYEQNLRRIIEQLRPHG--PVILVSPPPRGPDPRD-----------PK 120 (179)
T ss_dssp TCSEEEEE--HHHHCTC---TTC----HHHHHHHHHHHHHHHHHHHTTS--EEEEEE-SCSSSSTTT-----------TH
T ss_pred CCCEEEEEccccccccc---ccc----cccHHHHHHHHHHHHHhhcccC--cEEEecCCCccccccc-----------cc
Confidence 34588999999998752 111 2234566777788888887777 8888888876432211 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
..........+|..+++.. +++ .+.++|++..+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~a----~~~---~~~~id~~~~~~~ 155 (179)
T PF13472_consen 121 QDYLNRRIDRYNQAIRELA----KKY---GVPFIDLFDAFDD 155 (179)
T ss_dssp TTCHHHHHHHHHHHHHHHH----HHC---TEEEEEHHHHHBT
T ss_pred chhhhhhHHHHHHHHHHHH----HHc---CCEEEECHHHHcc
Confidence 2344566777777776543 333 6889999988654
No 16
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=96.42 E-value=0.018 Score=44.50 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHh-CCeEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNL-GARSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~-GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
.-.+.+|++|+||.... .+ .++...++.+.++++.+. ...+++++++||..-.+.
T Consensus 51 ~pd~v~i~~G~ND~~~~----~~-------~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~------------- 106 (174)
T cd01841 51 NPSKVFLFLGTNDIGKE----VS-------SNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE------------- 106 (174)
T ss_pred CCCEEEEEeccccCCCC----CC-------HHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-------------
Confidence 34678899999997532 22 234555666666766654 456788889888642211
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
+....++....+|..+++..+ ++ .+.++|++..+.+
T Consensus 107 ~~~~~~~~~~~~n~~l~~~a~----~~---~~~~id~~~~~~~ 142 (174)
T cd01841 107 IKTRSNTRIQRLNDAIKELAP----EL---GVTFIDLNDVLVD 142 (174)
T ss_pred cccCCHHHHHHHHHHHHHHHH----HC---CCEEEEcHHHHcC
Confidence 122334667788888776433 32 3788999988753
No 17
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=96.33 E-value=0.031 Score=43.81 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=57.0
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH--hCCeEEEEccCCCCccchhhhhcCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYN--LGARSFWIHNTGPIGCLPYILANFPSAKDSA 166 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~--~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~ 166 (220)
.-.+++|++|+||..... ...... ......++...++++-+ .|+ ++++++.||.+-....... ....
T Consensus 63 ~pd~vii~~G~ND~~~~~--~~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~ii~~t~~~~~~~~~~~~~----~~~~ 131 (199)
T cd01838 63 QPDLVTIFFGANDAALPG--QPQHVP----LDEYKENLRKIVSHLKSLSPKT-KVILITPPPVDEEAWEKSL----EDGG 131 (199)
T ss_pred CceEEEEEecCccccCCC--CCCccc----HHHHHHHHHHHHHHHHhhCCCC-eEEEeCCCCCCHHHHhhhh----cccc
Confidence 467999999999986431 100001 23334445555555554 455 5777788876532211100 0001
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 167 GCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 167 ~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
......|+....||..+++... ++ .+.++|++..+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~a~----~~---~~~~iD~~~~~~~ 168 (199)
T cd01838 132 SQPGRTNELLKQYAEACVEVAE----EL---GVPVIDLWTAMQE 168 (199)
T ss_pred CCccccHHHHHHHHHHHHHHHH----Hh---CCcEEEHHHHHHh
Confidence 1234456777788877655433 33 3778899987764
No 18
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=96.22 E-value=0.11 Score=44.21 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=58.7
Q ss_pred ceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeE-EEEccCCCCccchhhhhcCC--CCCCCCC
Q 027669 91 ALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARS-FWIHNTGPIGCLPYILANFP--SAKDSAG 167 (220)
Q Consensus 91 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~-~~V~~lpplGc~P~~~~~~~--~~~d~~~ 167 (220)
.|.+|.||+||.... ..... ........+++.+.++.|.+..-|- ++++++|++.-++.....-. ...-...
T Consensus 121 klVtI~IG~ND~c~~-~~~~~----~~~~~~~~~nL~~~L~~Lr~~~P~~~V~lv~~~~~~~l~~~~~~p~~c~~~~~~~ 195 (288)
T cd01824 121 KLITIFIGGNDLCSL-CEDAN----PGSPQTFVKNLRKALDILRDEVPRAFVNLVGLLNVASLRSLTKKPLQCETLLAPE 195 (288)
T ss_pred cEEEEEecchhHhhh-ccccc----CcCHHHHHHHHHHHHHHHHHhCCCcEEEEEcCCCcHHHHHhccCCccccccCCCc
Confidence 378889999999752 11111 1224556667778888888777543 56667766544333221000 0000112
Q ss_pred C--c--------hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 027669 168 C--A--------KPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTY 201 (220)
Q Consensus 168 c--~--------~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~ 201 (220)
| . +.+.+....|+..+++..++-+.+..+..+++
T Consensus 196 C~c~~~~~~~~~~~~~~~~~~y~~~~~eia~~~~~~~~~f~vv~ 239 (288)
T cd01824 196 CPCLLGPTENSYQDLKKFYKEYQNEVEEIVESGEFDREDFAVVV 239 (288)
T ss_pred CCCcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccccCccEEe
Confidence 3 2 36667888888888766655332233445555
No 19
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.20 E-value=0.041 Score=43.44 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=55.2
Q ss_pred CceEEEEechhhhhhhhcCCCC--hhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 90 KALYTFDIGQNDLGAGFFGNMS--VEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~~~~~--~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
-++.++.+|+||..... .+.. .....++......++...++.+-+.|++ +++++.||++-
T Consensus 60 pd~vii~~G~ND~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~-vili~~pp~~~---------------- 121 (200)
T cd01829 60 PDVVVVFLGANDRQDIR-DGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVP-VIWVGLPAMRS---------------- 121 (200)
T ss_pred CCEEEEEecCCCCcccc-CCCceeecCChhHHHHHHHHHHHHHHHHHhCCCc-EEEEcCCCCCC----------------
Confidence 46888899999986421 1110 0011233445556666667766666765 77778777531
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
...++....+|..+++..+ +. .+.++|++..+.+
T Consensus 122 --~~~~~~~~~~~~~~~~~a~----~~---~~~~id~~~~~~~ 155 (200)
T cd01829 122 --PKLSADMVYLNSLYREEVA----KA---GGEFVDVWDGFVD 155 (200)
T ss_pred --hhHhHHHHHHHHHHHHHHH----Hc---CCEEEEhhHhhcC
Confidence 1223455667766655433 32 3688999887743
No 20
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=96.14 E-value=0.037 Score=43.10 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCC-ccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPI-GCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lppl-Gc~P~~~~~~~~~~d~~~ 167 (220)
.-.+++|.+|.||.... ..+ ..+...++...|+++...+++ ++++++||. +..|..
T Consensus 67 ~~d~vii~~G~ND~~~~---~~~-------~~~~~~~~~~~i~~i~~~~~~-vil~~~~~~~~~~~~~------------ 123 (185)
T cd01832 67 RPDLVTLLAGGNDILRP---GTD-------PDTYRADLEEAVRRLRAAGAR-VVVFTIPDPAVLEPFR------------ 123 (185)
T ss_pred CCCEEEEeccccccccC---CCC-------HHHHHHHHHHHHHHHHhCCCE-EEEecCCCccccchhH------------
Confidence 34689999999997541 111 233444555666666666775 778888887 322211
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVK 208 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~ 208 (220)
...++....+|+.|++..++ + .+.++|++..+
T Consensus 124 --~~~~~~~~~~n~~l~~~a~~----~---~v~~vd~~~~~ 155 (185)
T cd01832 124 --RRVRARLAAYNAVIRAVAAR----Y---GAVHVDLWEHP 155 (185)
T ss_pred --HHHHHHHHHHHHHHHHHHHH----c---CCEEEecccCc
Confidence 12345567777777655443 2 47788888764
No 21
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.10 E-value=0.036 Score=42.60 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH--hCCeEEEEccCCCCccchhhhhcCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYN--LGARSFWIHNTGPIGCLPYILANFPSAKDSA 166 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~--~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~ 166 (220)
.-.++++.+|.||.... .+ ......++.+.++.+.+ .++ ++++.++||.+ + .
T Consensus 48 ~pd~vvl~~G~ND~~~~----~~-------~~~~~~~l~~li~~~~~~~~~~-~vi~~~~~p~~--~----~-------- 101 (169)
T cd01828 48 QPKAIFIMIGINDLAQG----TS-------DEDIVANYRTILEKLRKHFPNI-KIVVQSILPVG--E----L-------- 101 (169)
T ss_pred CCCEEEEEeeccCCCCC----CC-------HHHHHHHHHHHHHHHHHHCCCC-eEEEEecCCcC--c----c--------
Confidence 34789999999998532 11 13445555666666665 454 58888888865 1 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 167 GCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 167 ~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
....+..+..+|..+++..+ + . ++.++|+++.+.
T Consensus 102 --~~~~~~~~~~~n~~l~~~a~----~-~--~~~~id~~~~~~ 135 (169)
T cd01828 102 --KSIPNEQIEELNRQLAQLAQ----Q-E--GVTFLDLWAVFT 135 (169)
T ss_pred --CcCCHHHHHHHHHHHHHHHH----H-C--CCEEEechhhhc
Confidence 01223556788888776544 2 2 467789887764
No 22
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.08 E-value=0.072 Score=41.60 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=49.5
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhC-CeEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLG-ARSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~G-Ar~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
.-.+++|.+|+||..... ..+ .+....++.+.|+++.+.+ ..++++.+.+|...... .
T Consensus 67 ~pd~Vii~~G~ND~~~~~--~~~-------~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~------------~ 125 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQN--WKY-------KDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDG------------G 125 (188)
T ss_pred CCCEEEEEcccCCCCCCC--Ccc-------HHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCC------------C
Confidence 347899999999975421 111 1233445556666666554 34777777776432110 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
+ ..-+.....+|..++ ++.+++ .+.++|+|+.+.
T Consensus 126 ~-~~~~~~~~~~~~~~~----~~a~~~---~~~~vD~~~~~~ 159 (188)
T cd01827 126 F-INDNIIKKEIQPMID----KIAKKL---NLKLIDLHTPLK 159 (188)
T ss_pred c-cchHHHHHHHHHHHH----HHHHHc---CCcEEEcccccc
Confidence 1 111234445555554 344432 466789887653
No 23
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=95.87 E-value=0.054 Score=43.59 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=53.7
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhC-CeEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLG-ARSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~G-Ar~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
.-.+++|.+|+||.... .+ .+++..++.+.++++.+.. -.+|++++++|.+-.|
T Consensus 89 ~pd~VvI~~G~ND~~~~----~~-------~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~-------------- 143 (214)
T cd01820 89 NPKVVVLLIGTNNIGHT----TT-------AEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNP-------------- 143 (214)
T ss_pred CCCEEEEEecccccCCC----CC-------HHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCc--------------
Confidence 34789999999997532 12 2345566666677776653 3468888888754321
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKY 209 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~ 209 (220)
..+.+....+|..+++... + ...+.|+|++..+.
T Consensus 144 --~~~~~~~~~~n~~l~~~~~----~--~~~v~~vd~~~~~~ 177 (214)
T cd01820 144 --NPLRERNAQVNRLLAVRYD----G--LPNVTFLDIDKGFV 177 (214)
T ss_pred --hhHHHHHHHHHHHHHHHhc----C--CCCEEEEeCchhhc
Confidence 1223445566766654332 1 22688899998774
No 24
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=95.81 E-value=0.056 Score=42.77 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGC 168 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c 168 (220)
.-++++|.+|.||..... .... .. ++....++.+.++++-+.|++ +++++.+|... +. .+
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~-~~----~~~~~~nl~~ii~~~~~~~~~-~il~tp~~~~~-------~~------~~ 124 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYT-EP----YTTYKEYLRRYIAEARAKGAT-PILVTPVTRRT-------FD------EG 124 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCC-Cc----HHHHHHHHHHHHHHHHHCCCe-EEEECCccccc-------cC------CC
Confidence 348999999999975421 0000 01 244555666667777778886 44555444211 10 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHh
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFR 213 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~ 213 (220)
. ..+.....||..+++..+ ++ .+.++|+++.+.+..+
T Consensus 125 ~-~~~~~~~~~~~~~~~~a~----~~---~~~~vD~~~~~~~~~~ 161 (198)
T cd01821 125 G-KVEDTLGDYPAAMRELAA----EE---GVPLIDLNAASRALYE 161 (198)
T ss_pred C-cccccchhHHHHHHHHHH----Hh---CCCEEecHHHHHHHHH
Confidence 0 122334566666655433 33 3778999998876543
No 25
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=95.58 E-value=0.088 Score=40.95 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=55.1
Q ss_pred CceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCc
Q 027669 90 KALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCA 169 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~ 169 (220)
-.++++.+|.||.... .+ ..+....+.+.++.+.+.|++ ++++..+|..-.+.. .+.
T Consensus 60 ~d~v~i~~G~ND~~~~----~~-------~~~~~~~~~~li~~~~~~~~~-~il~~~~p~~~~~~~-----------~~~ 116 (183)
T cd04501 60 PAVVIIMGGTNDIIVN----TS-------LEMIKDNIRSMVELAEANGIK-VILASPLPVDDYPWK-----------PQW 116 (183)
T ss_pred CCEEEEEeccCccccC----CC-------HHHHHHHHHHHHHHHHHCCCc-EEEEeCCCcCccccc-----------hhh
Confidence 4688999999998642 11 123445566666677777875 555566664322210 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHH
Q 027669 170 KPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSL 211 (220)
Q Consensus 170 ~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~i 211 (220)
...+.....||..+++.-+ +. .+.++|.++.+.+.
T Consensus 117 ~~~~~~~~~~n~~~~~~a~----~~---~v~~vd~~~~~~~~ 151 (183)
T cd04501 117 LRPANKLKSLNRWLKDYAR----EN---GLLFLDFYSPLLDE 151 (183)
T ss_pred cchHHHHHHHHHHHHHHHH----Hc---CCCEEechhhhhcc
Confidence 2335566777876655433 32 48899999987653
No 26
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.40 E-value=0.074 Score=42.40 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=35.6
Q ss_pred ceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCC
Q 027669 91 ALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPI 149 (220)
Q Consensus 91 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lppl 149 (220)
.+.+|.+|.||...... ... .....++....++...++++.+.|+ ++++.+++|.
T Consensus 76 ~~vii~~G~ND~~~~~~-~~~--~~~~~~~~~~~~l~~ii~~~~~~~~-~vil~t~~P~ 130 (204)
T cd01830 76 RTVIILEGVNDIGASGT-DFA--AAPVTAEELIAGYRQLIRRAHARGI-KVIGATITPF 130 (204)
T ss_pred CEEEEeccccccccccc-ccc--cCCCCHHHHHHHHHHHHHHHHHCCC-eEEEecCCCC
Confidence 57888999999864311 110 1111234566677777888888887 5777888875
No 27
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=95.15 E-value=0.16 Score=39.12 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=51.8
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGA-RSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GA-r~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
.-.+.++.+|+||+.. +.+ .....+++.+.++++.+.+. .+++++++||. | ..
T Consensus 50 ~p~~vvi~~G~ND~~~----~~~-------~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~---~--~~---------- 103 (171)
T cd04502 50 QPRRVVLYAGDNDLAS----GRT-------PEEVLRDFRELVNRIRAKLPDTPIAIISIKPS---P--AR---------- 103 (171)
T ss_pred CCCEEEEEEecCcccC----CCC-------HHHHHHHHHHHHHHHHHHCCCCcEEEEEecCC---C--cc----------
Confidence 3468999999999743 222 23456666777777776642 45677666542 1 00
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
...+.....+|..+++..+ +. -.+.++|++..+.+
T Consensus 104 --~~~~~~~~~~n~~~~~~a~----~~--~~v~~vD~~~~~~~ 138 (171)
T cd04502 104 --WALRPKIRRFNALLKELAE----TR--PNLTYIDVASPMLD 138 (171)
T ss_pred --hhhHHHHHHHHHHHHHHHh----cC--CCeEEEECcHHHhC
Confidence 1122345667766655432 22 25778999987754
No 28
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=94.77 E-value=0.34 Score=41.39 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=35.9
Q ss_pred ceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCe--EEEEccCCC
Q 027669 91 ALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGAR--SFWIHNTGP 148 (220)
Q Consensus 91 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr--~~~V~~lpp 148 (220)
.+++|++|+||..... .+. .. ...+.+--.++.+.++.|-+..-+ +++++++|+
T Consensus 124 ~lVtI~lGgND~C~g~-~d~--~~-~tp~eefr~NL~~~L~~Lr~~lP~~s~ViLvgmpd 179 (305)
T cd01826 124 ALVIYSMIGNDVCNGP-NDT--IN-HTTPEEFYENVMEALKYLDTKLPNGSHVILVGLVD 179 (305)
T ss_pred eEEEEEeccchhhcCC-Ccc--cc-CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeccc
Confidence 7888899999987531 011 00 123445556677778888887644 888888887
No 29
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=93.91 E-value=0.59 Score=36.20 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=52.4
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGA-RSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GA-r~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
.-.+++|.+|+||.... .+..+++.+.+++|.+..- .+|++++.+|. |..... .+
T Consensus 57 ~pd~vii~~G~ND~~~~--------------~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~---~~~~~~-------~~ 112 (177)
T cd01844 57 PADLYIIDCGPNIVGAE--------------AMVRERLGPLVKGLRETHPDTPILLVSPRYC---PDAELT-------PG 112 (177)
T ss_pred CCCEEEEEeccCCCccH--------------HHHHHHHHHHHHHHHHHCcCCCEEEEecCCC---CccccC-------cc
Confidence 34689999999996321 1456667777788877653 46777777664 221111 02
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHH
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVK 208 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~ 208 (220)
.....++....+|..+ +.+..+ ...++.++|.+.++
T Consensus 113 ~~~~~~~~~~~~~~~~----~~~~~~-~~~~v~~id~~~~~ 148 (177)
T cd01844 113 RGKLTLAVRRALREAF----EKLRAD-GVPNLYYLDGEELL 148 (177)
T ss_pred hhHHHHHHHHHHHHHH----HHHHhc-CCCCEEEecchhhc
Confidence 2233444444444444 444332 23478899987665
No 30
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=93.46 E-value=0.26 Score=38.93 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEc
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIH 144 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~ 144 (220)
+-.+++|.+|.||... ..+ ..+..+++..-++++.+.|++.+++.
T Consensus 71 ~pd~Vii~~GtND~~~----~~~-------~~~~~~~l~~li~~~~~~~~~~ill~ 115 (191)
T PRK10528 71 QPRWVLVELGGNDGLR----GFP-------PQQTEQTLRQIIQDVKAANAQPLLMQ 115 (191)
T ss_pred CCCEEEEEeccCcCcc----CCC-------HHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3478999999999642 222 23455666677777777898877763
No 31
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=93.28 E-value=0.43 Score=37.38 Aligned_cols=93 Identities=9% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGC 168 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c 168 (220)
+-.+.+|.+|.||..... ...+.....+| ...+...++++ +.++ ++++++++|..-.+
T Consensus 69 ~pd~V~i~~G~ND~~~~~-~~~~~~~~~~~----~~~~~~ii~~~-~~~~-~vi~~~~~p~~~~~--------------- 126 (193)
T cd01835 69 VPNRLVLSVGLNDTARGG-RKRPQLSARAF----LFGLNQLLEEA-KRLV-PVLVVGPTPVDEAK--------------- 126 (193)
T ss_pred CCCEEEEEecCccccccc-CcccccCHHHH----HHHHHHHHHHH-hcCC-cEEEEeCCCccccc---------------
Confidence 457999999999986531 11111111122 22222222222 2344 47787877753110
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
....+.....+|..+++..+ ++ .+.++|++..+.+
T Consensus 127 ~~~~~~~~~~~n~~~~~~a~----~~---~~~~vd~~~~~~~ 161 (193)
T cd01835 127 MPYSNRRIARLETAFAEVCL----RR---DVPFLDTFTPLLN 161 (193)
T ss_pred cchhhHHHHHHHHHHHHHHH----Hc---CCCeEeCccchhc
Confidence 11234556677777765443 32 4678898877653
No 32
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=92.63 E-value=1.5 Score=35.62 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=61.8
Q ss_pred cCCceEEEEechhhhhhhhcCCCCh----hhhhhhHHHHHHHHHHHHHHHHHh-CCeEEEEccCCCCccchhhhhcCCCC
Q 027669 88 FSKALYTFDIGQNDLGAGFFGNMSV----EEVNESIPDIINKFSANVKSIYNL-GARSFWIHNTGPIGCLPYILANFPSA 162 (220)
Q Consensus 88 ~~~sL~~i~iG~ND~~~~~~~~~~~----~~~~~~~~~~v~~~~~~i~~L~~~-GAr~~~V~~lpplGc~P~~~~~~~~~ 162 (220)
..-++.+|++|+||-... ..+. -.+.+|+ +++.+-++-|-+. --.+|++.+-||+...-......
T Consensus 67 ~~p~lvtVffGaNDs~l~---~~~~~~~hvPl~Ey~----dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~--- 136 (245)
T KOG3035|consen 67 IQPVLVTVFFGANDSCLP---EPSSLGQHVPLEEYK----DNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQ--- 136 (245)
T ss_pred CCceEEEEEecCccccCC---CCCCCCCccCHHHHH----HHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhc---
Confidence 355889999999997542 2221 1234554 3344444444433 34567888888876553333321
Q ss_pred CCCCCCc---hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 163 KDSAGCA---KPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 163 ~d~~~c~---~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
.+|. ++.|+.+..|+..+.+.-+++ ++..+|.++.+.+
T Consensus 137 ---e~~~~~~~RtNe~~~~Ya~ac~~la~e~-------~l~~vdlws~~Q~ 177 (245)
T KOG3035|consen 137 ---EPYVLGPERTNETVGTYAKACANLAQEI-------GLYVVDLWSKMQE 177 (245)
T ss_pred ---cchhccchhhhhHHHHHHHHHHHHHHHh-------CCeeeeHHhhhhh
Confidence 2343 358999999998887766554 3556677666554
No 33
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=92.62 E-value=0.51 Score=36.59 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=51.1
Q ss_pred CceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHh-CCeEEEEccCCCCccchhhhhcCCCCCCCCCC
Q 027669 90 KALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNL-GARSFWIHNTGPIGCLPYILANFPSAKDSAGC 168 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~-GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c 168 (220)
-.+++|.+|+||.... ..+ .+....++...++++.+. ...++++++.||....+. .|
T Consensus 57 pd~Vii~~G~ND~~~~---~~~-------~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~------------~~ 114 (189)
T cd01825 57 PDLVILSYGTNEAFNK---QLN-------ASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTG------------AG 114 (189)
T ss_pred CCEEEEECCCcccccC---CCC-------HHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCC------------CC
Confidence 4688999999996431 112 234555666666666653 566677777766432211 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
....+...+.+|..++ ++.+++ .+.++|++..+.+
T Consensus 115 ~~~~~~~~~~~~~~~~----~~a~~~---~v~~vd~~~~~~~ 149 (189)
T cd01825 115 RWRTPPGLDAVIAAQR----RVAKEE---GIAFWDLYAAMGG 149 (189)
T ss_pred CcccCCcHHHHHHHHH----HHHHHc---CCeEEeHHHHhCC
Confidence 1111223445554444 344443 2788999987643
No 34
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=91.17 E-value=1.4 Score=33.57 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNT 146 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~l 146 (220)
.-.+++|.+|+||.... .+ ......++.+.++++.+.|++ ++++++
T Consensus 64 ~pd~v~i~~G~ND~~~~----~~-------~~~~~~~l~~li~~~~~~~~~-vil~~~ 109 (177)
T cd01822 64 KPDLVILELGGNDGLRG----IP-------PDQTRANLRQMIETAQARGAP-VLLVGM 109 (177)
T ss_pred CCCEEEEeccCcccccC----CC-------HHHHHHHHHHHHHHHHHCCCe-EEEEec
Confidence 34689999999996432 21 133455566667777777876 555554
No 35
>PLN02757 sirohydrochlorine ferrochelatase
Probab=90.80 E-value=0.85 Score=35.09 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 027669 126 FSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVY 205 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y 205 (220)
+.++|++|.+.|+|+|+| .|.++.... .....+...+++++.++|+.+|.+...-
T Consensus 60 l~eal~~l~~~g~~~vvV--------vP~FL~~G~-----------------H~~~DIp~~v~~~~~~~p~~~i~~~~pL 114 (154)
T PLN02757 60 IKDAFGRCVEQGASRVIV--------SPFFLSPGR-----------------HWQEDIPALTAEAAKEHPGVKYLVTAPI 114 (154)
T ss_pred HHHHHHHHHHCCCCEEEE--------EEhhhcCCc-----------------chHhHHHHHHHHHHHHCCCcEEEECCCC
Confidence 345678888899999988 577775521 2234567788889999999999887543
No 36
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=90.80 E-value=0.89 Score=34.34 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=11.2
Q ss_pred CceEEEEechhhh
Q 027669 90 KALYTFDIGQNDL 102 (220)
Q Consensus 90 ~sL~~i~iG~ND~ 102 (220)
..+.+|++|+||.
T Consensus 51 ~d~vvi~lGtNd~ 63 (150)
T cd01840 51 RKTVVIGLGTNGP 63 (150)
T ss_pred CCeEEEEecCCCC
Confidence 4678999999997
No 37
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=86.92 E-value=4.7 Score=30.79 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=29.2
Q ss_pred CceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEEEcc
Q 027669 90 KALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGA-RSFWIHN 145 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GA-r~~~V~~ 145 (220)
-.+.+|.+|+||..... ..+ ......++.+.++++.+..- .+|++..
T Consensus 56 pd~vii~~G~ND~~~~~--~~~-------~~~~~~~~~~li~~i~~~~p~~~i~~~~ 103 (169)
T cd01831 56 PDLVVINLGTNDFSTGN--NPP-------GEDFTNAYVEFIEELRKRYPDAPIVLML 103 (169)
T ss_pred CCEEEEECCcCCCCCCC--CCC-------HHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 46899999999985321 111 24456666777777776553 3455554
No 38
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=85.83 E-value=5.8 Score=35.08 Aligned_cols=80 Identities=16% Similarity=0.067 Sum_probs=47.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcHHHhcCCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHH
Q 027669 50 SPFYLDVQLQQFSQFKNRSQIIRNRGGIFASLMPREEYFSKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSAN 129 (220)
Q Consensus 50 ~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 129 (220)
..-+|-.|-+...+.+++..+. . ... .=-|..||||+||+-.. -.+.+ +....++.--..|.++
T Consensus 158 ~s~Dlp~QAr~Lv~rik~~~~i---~------~~~----dWKLi~IfIG~ND~c~~-c~~~~--~~~~~~~~~~~~i~~A 221 (397)
T KOG3670|consen 158 ESEDLPDQARDLVSRIKKDKEI---N------MKN----DWKLITIFIGTNDLCAY-CEGPE--TPPSPVDQHKRNIRKA 221 (397)
T ss_pred cchhhHHHHHHHHHHHHhccCc---c------ccc----ceEEEEEEeccchhhhh-ccCCC--CCCCchhHHHHHHHHH
Confidence 4458888888776655543210 0 001 11478889999999863 22211 1122344445668889
Q ss_pred HHHHHHhCCeEEEEcc
Q 027669 130 VKSIYNLGARSFWIHN 145 (220)
Q Consensus 130 i~~L~~~GAr~~~V~~ 145 (220)
++.|.+.==|.+|++-
T Consensus 222 l~~L~~nvPR~iV~lv 237 (397)
T KOG3670|consen 222 LEILRDNVPRTIVSLV 237 (397)
T ss_pred HHHHHhcCCceEEEEe
Confidence 9999888888885544
No 39
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=84.18 E-value=6.8 Score=32.08 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=47.5
Q ss_pred EEechhhhhhhhcCCCChh-hhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHH
Q 027669 95 FDIGQNDLGAGFFGNMSVE-EVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYN 173 (220)
Q Consensus 95 i~iG~ND~~~~~~~~~~~~-~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n 173 (220)
++.|.+.....| +.+.. +..+ ...-+.+.++.|...|.|+|+++|=. +| |
T Consensus 62 i~yG~s~~h~~f--pGTisl~~~t----~~~~l~di~~sl~~~Gf~~ivivngH------------------gG-----N 112 (237)
T PF02633_consen 62 IPYGCSPHHMGF--PGTISLSPET----LIALLRDILRSLARHGFRRIVIVNGH------------------GG-----N 112 (237)
T ss_dssp B--BB-GCCTTS--TT-BBB-HHH----HHHHHHHHHHHHHHHT--EEEEEESS------------------TT-----H
T ss_pred CccccCcccCCC--CCeEEeCHHH----HHHHHHHHHHHHHHcCCCEEEEEECC------------------Hh-----H
Confidence 478888776543 22221 1122 23334556788999999999998832 12 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH
Q 027669 174 EVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS 210 (220)
Q Consensus 174 ~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ 210 (220)
. ..|+..+.+|++++++..+..+|.+.+..+
T Consensus 113 ~------~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~ 143 (237)
T PF02633_consen 113 I------AALEAAARELRQEYPGVKVFVINWWQLAED 143 (237)
T ss_dssp H------HHHHHHHHHHHHHGCC-EEEEEEGGGCSHC
T ss_pred H------HHHHHHHHHHHhhCCCcEEEEeechhccch
Confidence 1 245667788888889999999999987654
No 40
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=82.80 E-value=2.3 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 027669 127 SANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVD 203 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D 203 (220)
.+.+++|.+.|+++++| .|.++.... .....+...+++++.++++.++.+.+
T Consensus 47 ~~~l~~l~~~g~~~v~v--------vPlfl~~G~-----------------h~~~dip~~~~~~~~~~~~~~i~~~~ 98 (101)
T cd03416 47 AEALDELAAQGATRIVV--------VPLFLLAGG-----------------HVKEDIPAALAAARARHPGVRIRYAP 98 (101)
T ss_pred HHHHHHHHHcCCCEEEE--------EeeEeCCCc-----------------cccccHHHHHHHHHHHCCCeEEEecC
Confidence 34577888899999988 466665421 11234556777777788999888765
No 41
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.01 E-value=2.7 Score=37.08 Aligned_cols=48 Identities=25% Similarity=0.451 Sum_probs=32.9
Q ss_pred HHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 027669 131 KSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVY 205 (220)
Q Consensus 131 ~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y 205 (220)
-.+++.|+.+++. +.|+||.|.-... +-|+.+|++++|++++.-+|.-
T Consensus 326 ~e~i~~g~~nvIc--lqPFGCmPnhI~~-------------------------kgm~k~lk~~~p~ani~aVd~d 373 (420)
T COG3581 326 LELIESGVDNVIC--LQPFGCMPNHIVS-------------------------KGMIKGLKRDKPKANIAAVDYD 373 (420)
T ss_pred HHHHHcCCCceEE--ecCccCCcHHHHH-------------------------HHHHHHHHhcCCCCceEEeecC
Confidence 4567788887765 7899999944322 2456667777777777777665
No 42
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=80.13 E-value=1 Score=31.80 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecch
Q 027669 128 ANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYS 206 (220)
Q Consensus 128 ~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~ 206 (220)
+.+++|.+.|+++|+| .|.++... ......+.+.++.++.++|+.++.+.....
T Consensus 41 ~~l~~l~~~g~~~ivv--------vP~fL~~G-----------------~h~~~DIp~~l~~~~~~~~~~~v~~~~pLG 94 (105)
T PF01903_consen 41 EALERLVAQGARRIVV--------VPYFLFPG-----------------YHVKRDIPEALAEARERHPGIEVRVAPPLG 94 (105)
T ss_dssp HCCHHHHCCTCSEEEE--------EEESSSSS-----------------HHHHCHHHHHHCHHHHCSTTEEEEE---GG
T ss_pred HHHHHHHHcCCCeEEE--------EeeeecCc-----------------cchHhHHHHHHHHHHhhCCceEEEECCCCC
Confidence 3468888999999988 46666441 112233678889999999999999876543
No 43
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=79.31 E-value=5 Score=34.43 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 027669 121 DIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFT 200 (220)
Q Consensus 121 ~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~ 200 (220)
.-++.+.+.++++.++|.+.|+++++|+. . |..| .+..|. |..+++.+..+++++|++-+
T Consensus 58 ~sid~l~~~~~~~~~~Gi~~v~lFgv~~~-K------------d~~g-s~A~~~-----~g~v~~air~iK~~~pdl~v- 117 (322)
T PRK13384 58 LPESALADEIERLYALGIRYVMPFGISHH-K------------DAKG-SDTWDD-----NGLLARMVRTIKAAVPEMMV- 117 (322)
T ss_pred ECHHHHHHHHHHHHHcCCCEEEEeCCCCC-C------------CCCc-ccccCC-----CChHHHHHHHHHHHCCCeEE-
Confidence 34567788899999999999999999642 1 1111 111111 34567788889999998754
Q ss_pred EEec
Q 027669 201 YVDV 204 (220)
Q Consensus 201 ~~D~ 204 (220)
..|+
T Consensus 118 i~DV 121 (322)
T PRK13384 118 IPDI 121 (322)
T ss_pred Eeee
Confidence 4454
No 44
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=76.34 E-value=6.7 Score=33.59 Aligned_cols=64 Identities=16% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 027669 121 DIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFT 200 (220)
Q Consensus 121 ~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~ 200 (220)
..++.+.+.++++.++|.+.|+++++|.. + |..| .+..|. |..+++.+..+++++|+.-+
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~-K------------d~~g-s~A~~~-----~g~v~~air~iK~~~p~l~v- 107 (314)
T cd00384 48 LSVDSLVEEAEELADLGIRAVILFGIPEH-K------------DEIG-SEAYDP-----DGIVQRAIRAIKEAVPELVV- 107 (314)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEECCCCC-C------------CCCc-ccccCC-----CChHHHHHHHHHHhCCCcEE-
Confidence 34677888899999999999999999642 1 1111 111111 34567788889999998644
Q ss_pred EEec
Q 027669 201 YVDV 204 (220)
Q Consensus 201 ~~D~ 204 (220)
..|+
T Consensus 108 i~Dv 111 (314)
T cd00384 108 ITDV 111 (314)
T ss_pred EEee
Confidence 4453
No 45
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=74.70 E-value=8 Score=33.24 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 027669 121 DIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFT 200 (220)
Q Consensus 121 ~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~ 200 (220)
.-++.+.+.++++.++|.+.|++++++|-. .+|+.| .+..|. |..+++.+..+++++|++-+
T Consensus 51 ~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~-----------~KD~~g-s~A~~~-----~g~v~~air~iK~~~p~l~v- 112 (320)
T cd04823 51 LSIDELLKEAEEAVDLGIPAVALFPVTPPE-----------LKSEDG-SEAYNP-----DNLVCRAIRAIKEAFPELGI- 112 (320)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEEecCCCcc-----------cCCccc-ccccCC-----CChHHHHHHHHHHhCCCcEE-
Confidence 346777888999999999999999985311 011111 111111 33456788889999998644
Q ss_pred EEec
Q 027669 201 YVDV 204 (220)
Q Consensus 201 ~~D~ 204 (220)
..|+
T Consensus 113 i~DV 116 (320)
T cd04823 113 ITDV 116 (320)
T ss_pred EEee
Confidence 4454
No 46
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=73.21 E-value=4.7 Score=34.60 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEccCCCCc-cchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 027669 121 DIINKFSANVKSIYNLGARSFWIHNTGPIG-CLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAF 199 (220)
Q Consensus 121 ~~v~~~~~~i~~L~~~GAr~~~V~~lpplG-c~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i 199 (220)
.-++.+.+.++++.++|.+.|+++++|+-. .-+. .+.+. ..=|..+++.+..+++++|++-
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~------------~gs~a-----~~~~g~v~~air~iK~~~pdl~- 109 (320)
T cd04824 48 YGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDR------------SGSAA-----DDEDGPVIQAIKLIREEFPELL- 109 (320)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcC------------ccccc-----cCCCChHHHHHHHHHHhCCCcE-
Confidence 345677888999999999999999996431 2211 00000 0112345678888889999864
Q ss_pred EEEec
Q 027669 200 TYVDV 204 (220)
Q Consensus 200 ~~~D~ 204 (220)
+..|+
T Consensus 110 vi~Dv 114 (320)
T cd04824 110 IACDV 114 (320)
T ss_pred EEEee
Confidence 44454
No 47
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.86 E-value=34 Score=29.68 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHh---CCeEEEEccCCCCccchhhhhcCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNL---GARSFWIHNTGPIGCLPYILANFPSAKDS 165 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~---GAr~~~V~~lpplGc~P~~~~~~~~~~d~ 165 (220)
.-+..+|.+|.||+-... .+....... .+.=...+.+.+.++.+. ---+++-+++|++-
T Consensus 177 ~~a~vVV~lGaND~q~~~-~gd~~~kf~--S~~W~~eY~kRvd~~l~ia~~~~~~V~WvGmP~~r--------------- 238 (354)
T COG2845 177 KPAAVVVMLGANDRQDFK-VGDVYEKFR--SDEWTKEYEKRVDAILKIAHTHKVPVLWVGMPPFR--------------- 238 (354)
T ss_pred CccEEEEEecCCCHHhcc-cCCeeeecC--chHHHHHHHHHHHHHHHHhcccCCcEEEeeCCCcc---------------
Confidence 446778899999998643 222111100 122233444445555443 33356778888742
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Q 027669 166 AGCAKPYNEVAKNFNLKLKEAVVQLRK 192 (220)
Q Consensus 166 ~~c~~~~n~~~~~~N~~L~~~l~~l~~ 192 (220)
.+.+|+-...+|...++.++++.-
T Consensus 239 ---~~~l~~dm~~ln~iy~~~vE~~~g 262 (354)
T COG2845 239 ---KKKLNADMVYLNKIYSKAVEKLGG 262 (354)
T ss_pred ---ccccchHHHHHHHHHHHHHHHhCC
Confidence 235667788999999988888753
No 48
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=72.35 E-value=5.2 Score=35.08 Aligned_cols=67 Identities=28% Similarity=0.248 Sum_probs=48.7
Q ss_pred cCCceEEEEechhhhhhhhcCCCChhhhh--hhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhh
Q 027669 88 FSKALYTFDIGQNDLGAGFFGNMSVEEVN--ESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILA 157 (220)
Q Consensus 88 ~~~sL~~i~iG~ND~~~~~~~~~~~~~~~--~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~ 157 (220)
..+.++..|+|+||+...-. .+ .+.. ..+......+..++-.++..+.-+||..+.|.++..|..+-
T Consensus 97 ~~~~~~~~~a~gnd~A~gga--~~-~~~~~~~~i~~~~~~~~~Qv~~~l~a~~~~~v~~~~~~~~l~p~~l~ 165 (370)
T COG3240 97 DPNGLYIHWAGGNDLAVGGA--RS-TEPNTGNSIGASATSLAQQVGAFLAAGQGGFVWPNYPAQGLDPSALY 165 (370)
T ss_pred CcccccCcccccccHhhhcc--cc-ccccccccccccccchHHHHHHHHHhcCCccccccccccccCHHHHH
Confidence 46778999999999986421 11 1111 22334445566778899999999999999999999998775
No 49
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=71.27 E-value=14 Score=27.25 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 027669 125 KFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVD 203 (220)
Q Consensus 125 ~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D 203 (220)
.+.+.+++|.+.|+++|+|..+ ++.. | .+...|.+.+++++ +|..+|.+..
T Consensus 57 ~~~eaL~~l~~~G~~~V~V~Pl--------~l~~--------G----------~e~~di~~~v~~~~--~~~~~i~~g~ 107 (127)
T cd03412 57 TPEEALAKLAADGYTEVIVQSL--------HIIP--------G----------EEYEKLKREVDAFK--KGFKKIKLGR 107 (127)
T ss_pred CHHHHHHHHHHCCCCEEEEEeC--------eeEC--------c----------HHHHHHHHHHHHHh--CCCceEEEcc
Confidence 4567889999999999999654 3322 1 11256667777777 6777777764
No 50
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=70.87 E-value=14 Score=26.45 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 027669 126 FSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDV 204 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~ 204 (220)
+.+.+++|.+.|+++++| .|.++... .|-..+...+++++.+ |+.++.+..-
T Consensus 47 ~~~~l~~l~~~g~~~i~v--------vP~fL~~G------------------~h~~~i~~~~~~~~~~-~~~~i~~~~p 98 (117)
T cd03414 47 LPEALERLRALGARRVVV--------LPYLLFTG------------------VLMDRIEEQVAELAAE-PGIEFVLAPP 98 (117)
T ss_pred HHHHHHHHHHcCCCEEEE--------EechhcCC------------------chHHHHHHHHHHHHhC-CCceEEECCC
Confidence 345577888899999988 45555431 1112355677788877 8888877653
No 51
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=70.77 E-value=8.5 Score=33.16 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 027669 122 IINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTY 201 (220)
Q Consensus 122 ~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~ 201 (220)
-++.+.+.++++.++|.+.|+++++|.. + |+. +.+..|. |..+.+.+..+++++|+.-+ .
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~-K------------d~~-gs~A~~~-----~g~v~rair~iK~~~p~l~v-i 116 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPEL-K------------DED-GSEAYNP-----DGLVQRAIRAIKKAFPELGV-I 116 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCC-C------------Ccc-cccccCC-----CCHHHHHHHHHHHhCCCcEE-E
Confidence 4667778899999999999999998432 1 111 1111111 33456788889999998644 4
Q ss_pred Eec
Q 027669 202 VDV 204 (220)
Q Consensus 202 ~D~ 204 (220)
.|+
T Consensus 117 ~DV 119 (323)
T PRK09283 117 TDV 119 (323)
T ss_pred Eee
Confidence 454
No 52
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=69.32 E-value=14 Score=31.61 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 027669 121 DIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFT 200 (220)
Q Consensus 121 ~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~ 200 (220)
..++.+.+.++++.++|.+-|+++++|+.. . +|..| +.+..-|..+++.+..+++.+|+. ++
T Consensus 58 ~s~d~l~~~~~~~~~lGi~av~LFgvp~~~----~-------Kd~~g------s~A~~~~givqravr~ik~~~p~l-~i 119 (330)
T COG0113 58 YSLDRLVEEAEELVDLGIPAVILFGVPDDS----K-------KDETG------SEAYDPDGIVQRAVRAIKEAFPEL-VV 119 (330)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEeCCCccc----c-------cCccc------ccccCCCChHHHHHHHHHHhCCCe-EE
Confidence 347778888999999999999999998632 1 11111 112222345678888899989855 33
Q ss_pred EEec
Q 027669 201 YVDV 204 (220)
Q Consensus 201 ~~D~ 204 (220)
..|+
T Consensus 120 itDv 123 (330)
T COG0113 120 ITDV 123 (330)
T ss_pred Eeee
Confidence 4443
No 53
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=63.57 E-value=28 Score=30.09 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 027669 122 IINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTY 201 (220)
Q Consensus 122 ~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~ 201 (220)
-++.+.+.++++.++|.+.|+++++.+ |.. +|..| .+.. .=|..+.+.+..+++.+|++- +.
T Consensus 55 sid~l~~~v~~~~~~GI~~v~lFgvi~----~~~-------Kd~~g-s~a~-----~~~g~v~~air~iK~~~pdl~-vi 116 (324)
T PF00490_consen 55 SIDSLVKEVEEAVDLGIRAVILFGVID----PSK-------KDEEG-SEAY-----NPDGLVQRAIRAIKKAFPDLL-VI 116 (324)
T ss_dssp EHHHHHHHHHHHHHTT--EEEEEEE-S----CSC--------BSS--GGGG-----STTSHHHHHHHHHHHHSTTSE-EE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeeCC----ccc-------CCcch-hccc-----CCCChHHHHHHHHHHhCCCcE-EE
Confidence 356677888999999999999999832 111 12111 1111 113355678888999999964 45
Q ss_pred Eec
Q 027669 202 VDV 204 (220)
Q Consensus 202 ~D~ 204 (220)
.|+
T Consensus 117 ~Dv 119 (324)
T PF00490_consen 117 TDV 119 (324)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 54
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=62.42 E-value=28 Score=27.48 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=12.5
Q ss_pred CceEEEEechhhhh
Q 027669 90 KALYTFDIGQNDLG 103 (220)
Q Consensus 90 ~sL~~i~iG~ND~~ 103 (220)
.++++|.+|+||..
T Consensus 78 ~d~v~i~lG~ND~~ 91 (216)
T COG2755 78 PDLVIIMLGGNDIG 91 (216)
T ss_pred CCEEEEEeeccccc
Confidence 68999999999985
No 55
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=61.89 E-value=18 Score=30.55 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGC 168 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c 168 (220)
++-+|=++|-.||--.. +. +........=+.++++.+..|.+.|.|.+++++++|-+ ..... |
T Consensus 39 ~nliyPlFI~e~~dd~~---pI--~SmPg~~r~G~~rL~e~l~plv~~Gl~sViLfgvv~~~----~Kd~~-------g- 101 (340)
T KOG2794|consen 39 ANLIYPLFIHEGEDDFT---PI--DSMPGIYRLGVNRLKEELAPLVAKGLRSVILFGVVPEA----LKDPT-------G- 101 (340)
T ss_pred hheeeeEEEecCccccc---cc--ccCCchhHHHHHHHHHHHHHHHHhccceEEEecCCCcc----ccCcc-------c-
Confidence 45566666665553211 11 11111223456678889999999999999999997522 11110 0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDV 204 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~ 204 (220)
+.+..=|.-.-..+..||..+|++-| +.|+
T Consensus 102 -----s~Ads~~gpvi~ai~~lr~~fPdL~i-~cDV 131 (340)
T KOG2794|consen 102 -----SEADSDNGPVIRAIRLLRDRFPDLVI-ACDV 131 (340)
T ss_pred -----ccccCCCCcHHHHHHHHHHhCcceEE-Eeee
Confidence 00111122334677888999999844 5554
No 56
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=59.28 E-value=32 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEcc
Q 027669 119 IPDIINKFSANVKSIYNLGARSFWIHN 145 (220)
Q Consensus 119 ~~~~v~~~~~~i~~L~~~GAr~~~V~~ 145 (220)
+..+-..+.+.|.+|++.|.+.|+.-+
T Consensus 24 ~~~ik~~L~~~i~~lie~G~~~fi~Gg 50 (177)
T PF06908_consen 24 IQVIKKALKKQIIELIEEGVRWFITGG 50 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTT--EEEE--
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 456777888999999999999997744
No 57
>PRK13660 hypothetical protein; Provisional
Probab=54.82 E-value=1e+02 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEcc
Q 027669 119 IPDIINKFSANVKSIYNLGARSFWIHN 145 (220)
Q Consensus 119 ~~~~v~~~~~~i~~L~~~GAr~~~V~~ 145 (220)
+..+-..+.+.|.++++.|.+.|++-+
T Consensus 24 ~~~IK~aL~~~l~~~~e~G~~wfi~gg 50 (182)
T PRK13660 24 IKYIKKAIKRKLIALLEEGLEWVIISG 50 (182)
T ss_pred hHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 345566788899999999999998754
No 58
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=51.81 E-value=76 Score=23.60 Aligned_cols=52 Identities=8% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 027669 127 SANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYV 202 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~ 202 (220)
.+.+++|.+.|+|+|+|+-+ .+. ..|.+.+-++-.. +.++.+++.+.++.++
T Consensus 80 ~~~l~~l~~~G~~~i~v~p~-------gF~---------~D~~Etl~di~~e--------~~~~~~~~G~~~~~rv 131 (135)
T cd00419 80 DDALEELAKEGVKNVVVVPI-------GFV---------SDHLETLYELDIE--------YRELAEEAGGENYRRV 131 (135)
T ss_pred HHHHHHHHHcCCCeEEEECC-------ccc---------cccHHHHHHHHHH--------HHHHHHHcCCceEEEc
Confidence 34578899999999998542 122 1588877665433 3333344444666654
No 59
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=50.49 E-value=52 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 027669 125 KFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDV 204 (220)
Q Consensus 125 ~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~ 204 (220)
++..+++.|.+.|+++|.+..+ +. + ...++.+.+++|+++|+.+-+
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~l--l~-----------------~---------------~~gl~~l~~~~p~v~i~~~~i 182 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSI--VA-----------------A---------------PEGIEAVEKAHPDVDIYTAAI 182 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEE--ec-----------------C---------------HHHHHHHHHHCCCCEEEEEEE
Confidence 5677889999999999988765 11 0 134566777899999988755
Q ss_pred chH
Q 027669 205 YSV 207 (220)
Q Consensus 205 y~~ 207 (220)
..-
T Consensus 183 d~~ 185 (207)
T TIGR01091 183 DEK 185 (207)
T ss_pred CCC
Confidence 443
No 60
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=50.11 E-value=21 Score=25.91 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCeEEEEc
Q 027669 126 FSANVKSIYNLGARSFWIH 144 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~ 144 (220)
+.+.+++|.+.|+|+++|.
T Consensus 48 l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 48 IPEALKKLIGTGADKIIVV 66 (126)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 3456788999999999884
No 61
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=49.08 E-value=17 Score=24.35 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCeEEEEccC
Q 027669 127 SANVKSIYNLGARSFWIHNT 146 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V~~l 146 (220)
.+.+.+|.+.||+-|+|..+
T Consensus 53 ~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 53 WDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp HHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHcCCCEEEEEec
Confidence 34468899999999999764
No 62
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=46.08 E-value=26 Score=24.78 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCeEEEEccC
Q 027669 125 KFSANVKSIYNLGARSFWIHNT 146 (220)
Q Consensus 125 ~~~~~i~~L~~~GAr~~~V~~l 146 (220)
.+.+.+.+|.++||+-|+|..+
T Consensus 75 ~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 75 VVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred HHHHHHHHHHHcCCCeEEEech
Confidence 4566788999999999999754
No 63
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=43.96 E-value=54 Score=24.34 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFP 195 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~ 195 (220)
.+..+.++..||..|++.|+++.+++.
T Consensus 70 e~q~e~lt~rF~~aL~~~L~~yq~~H~ 96 (128)
T PRK13717 70 EAQSKALSARFNTALEASLQAWQQKHH 96 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356778999999999999999998764
No 64
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.01 E-value=43 Score=30.72 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 027669 125 KFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDV 204 (220)
Q Consensus 125 ~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~ 204 (220)
++.+.++.|.+.|++-++|= .+..|+..+.++++++++++|+..++-.|+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D------------------------------~a~~~~~~~~~~i~~ik~~~p~~~v~agnv 276 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVD------------------------------TAHGHQEKMLEALRAVRALDPGVPIVAGNV 276 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEe------------------------------ccCCccHHHHHHHHHHHHHCCCCeEEeecc
Confidence 45567778888888776551 123446777889999999999998888676
Q ss_pred chH
Q 027669 205 YSV 207 (220)
Q Consensus 205 y~~ 207 (220)
-+.
T Consensus 277 ~t~ 279 (479)
T PRK07807 277 VTA 279 (479)
T ss_pred CCH
Confidence 543
No 65
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=40.72 E-value=98 Score=27.44 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=57.7
Q ss_pred EEEEec-hhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchH
Q 027669 93 YTFDIG-QNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKP 171 (220)
Q Consensus 93 ~~i~iG-~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~ 171 (220)
=++.|| .+|++... +-+. .+. .....+-+...++++-+.+-.-+++.|+-+..-. +. -..=...
T Consensus 239 ~vi~IGKI~DI~~~~--Git~-~~~--~~~n~~~~d~tl~~~~~~~~~~~vFtNlVdfD~~------yG----HRrDv~g 303 (397)
T COG1015 239 PVIAIGKIADIYAGQ--GITE-KVK--AVSNMDGMDVTLEEMKTAEFNGLVFTNLVDFDSL------YG----HRRDVAG 303 (397)
T ss_pred ceEEEeeHHhhhccc--cccc-ccc--CCCcHHHHHHHHHHHhcCCCCcEEEEeeeecccc------cc----cccchHH
Confidence 345667 78876531 2110 000 0122333445566666677778999999876522 11 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 027669 172 YNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDV 204 (220)
Q Consensus 172 ~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~ 204 (220)
+.+..+.|-++|...++.|+. .|+-|+.+|-
T Consensus 304 Ya~aLe~FD~rL~e~~~~l~e--dDlLiiTADH 334 (397)
T COG1015 304 YAAALEEFDRRLPELIENLRE--DDLLIITADH 334 (397)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCEEEEecCC
Confidence 677889999999999999875 3677777774
No 66
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.61 E-value=1.9e+02 Score=23.20 Aligned_cols=82 Identities=10% Similarity=0.068 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHH-HHHHHH---H------------
Q 027669 120 PDIINKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVA-KNFNLK---L------------ 183 (220)
Q Consensus 120 ~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~-~~~N~~---L------------ 183 (220)
+.+...+.+.|++|.+.++-+..+.|+---... ...+ -+.+.++..|.++ ..+|.. +
T Consensus 22 r~l~~~ve~~ik~ll~~~~~~a~l~nitGDDiv---i~~f----Vee~~lE~vN~aifevlr~y~eg~~Dl~GiSe~pdg 94 (244)
T COG4053 22 RKLNELVEKEIKKLLSKLGIKATLSNITGDDIV---ITSF----VEENLLEKVNKAIFEVLRKYAEGFDDLRGISEDPDG 94 (244)
T ss_pred HHHHHHHHHHHHHHHHhhcceeEeccccCCcEE---EEEe----ccccHHHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 467777788889999888888887776432211 1111 0124556666433 333332 1
Q ss_pred -----HHHHHHH-HHhCCCcEEEEEecchHH
Q 027669 184 -----KEAVVQL-RKDFPSAAFTYVDVYSVK 208 (220)
Q Consensus 184 -----~~~l~~l-~~~~~g~~i~~~D~y~~~ 208 (220)
.-..+.- .++|+++.|+.||+|..=
T Consensus 95 AGEG~SYAeAa~~~seY~Davi~aFDTYggE 125 (244)
T COG4053 95 AGEGLSYAEAASPISEYGDAVIIAFDTYGGE 125 (244)
T ss_pred CCCCchHhhhcCchhhcCceEEEEEecccch
Confidence 1111111 357899999999999753
No 67
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=39.91 E-value=94 Score=24.88 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 027669 125 KFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDV 204 (220)
Q Consensus 125 ~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~ 204 (220)
++...++.|.+.|++++.+..+ +.+ ...++.+.+++|+++|+.+-+
T Consensus 139 Tl~~ai~~L~~~G~~~I~~~~l--l~~--------------------------------~~gl~~l~~~~p~v~i~~~~i 184 (209)
T PRK00129 139 SAIAAIDLLKKRGAKNIKVLCL--VAA--------------------------------PEGIKALEEAHPDVEIYTAAI 184 (209)
T ss_pred HHHHHHHHHHHcCCCEEEEEEE--ecC--------------------------------HHHHHHHHHHCCCcEEEEEee
Confidence 5677889999999999988775 111 134566777889998887655
Q ss_pred ch
Q 027669 205 YS 206 (220)
Q Consensus 205 y~ 206 (220)
..
T Consensus 185 D~ 186 (209)
T PRK00129 185 DE 186 (209)
T ss_pred cC
Confidence 43
No 68
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.61 E-value=1.8e+02 Score=22.88 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=46.6
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhC-CeEEEEccCCCCccchhhhhcCCCCCCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLG-ARSFWIHNTGPIGCLPYILANFPSAKDSAG 167 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~G-Ar~~~V~~lpplGc~P~~~~~~~~~~d~~~ 167 (220)
+.++|++..|.| +... .+..++...|+.|.+.= -.-|+|+...+ +... .
T Consensus 59 ~a~~~~ld~~~N------~~~~----------~~~~~~~~fv~~iR~~hP~tPIllv~~~~--~~~~------------~ 108 (178)
T PF14606_consen 59 DADLIVLDCGPN------MSPE----------EFRERLDGFVKTIREAHPDTPILLVSPIP--YPAG------------Y 108 (178)
T ss_dssp --SEEEEEESHH------CCTT----------THHHHHHHHHHHHHTT-SSS-EEEEE------TTT------------T
T ss_pred CCCEEEEEeecC------CCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEecCC--cccc------------c
Confidence 458999999999 1111 22333445566665443 45566655322 1111 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHH---H---HhCccccCC
Q 027669 168 CAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYS---L---FRNPKRYGS 220 (220)
Q Consensus 168 c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~---i---i~nP~~yGf 220 (220)
...........+|..+++.+++|+++ .+-++.|+|-..++-+ . --||...||
T Consensus 109 ~~~~~~~~~~~~~~~~r~~v~~l~~~-g~~nl~~l~g~~llg~d~e~tvDgvHP~DlG~ 166 (178)
T PF14606_consen 109 FDNSRGETVEEFREALREAVEQLRKE-GDKNLYYLDGEELLGDDHEATVDGVHPNDLGM 166 (178)
T ss_dssp S--TTS--HHHHHHHHHHHHHHHHHT-T-TTEEEE-HHHCS------------------
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEeCchhhcCccccccccccccccccc
Confidence 11112245778999999999999754 5567888776664411 1 235666664
No 69
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=39.01 E-value=1.9e+02 Score=23.22 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=58.2
Q ss_pred CCceEEEEechhhhhhhhcC-C---CChhhhhhhHHHHHHHHHHHHHHHHHhCC--eEEEEccCCCCccchhhhhcCCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFG-N---MSVEEVNESIPDIINKFSANVKSIYNLGA--RSFWIHNTGPIGCLPYILANFPSA 162 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~-~---~~~~~~~~~~~~~v~~~~~~i~~L~~~GA--r~~~V~~lpplGc~P~~~~~~~~~ 162 (220)
..++.++..|.-+....... . ........ ...-+..+.+.+.++.+... .++++.+++|..- ... .-
T Consensus 100 ~pdvvV~nsG~W~~~~~~~~~~~~~~~~~~~~~-y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~-----~~~-~~ 172 (263)
T PF13839_consen 100 RPDVVVINSGLWYLRRSGFIEWGDNKEINPLEA-YRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHF-----EGG-DW 172 (263)
T ss_pred CCCEEEEEcchhhhhcchhcccCCCcCcchHHH-HHHHHHHHHHHHHhhhccccccceEEEEecCCccc-----ccc-cc
Confidence 56788888898886432110 0 11111222 24455666666776666555 6777777666421 110 00
Q ss_pred CCCCCCch-----HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHh
Q 027669 163 KDSAGCAK-----PYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFR 213 (220)
Q Consensus 163 ~d~~~c~~-----~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~ 213 (220)
..++.|.. -.+.....+|..+...+ ..+.++.+.|++..+.....
T Consensus 173 ~~gg~c~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ldi~~~~~~~r~ 222 (263)
T PF13839_consen 173 NSGGSCNPPRREEITNEQIDELNEALREAL------KKNSRVHLLDIFTMLSSFRP 222 (263)
T ss_pred ccCCCcCcccccCCCHHHHHHHHHHHHHHh------hcCCCceeeeecchhhhccc
Confidence 01334551 12344445554444433 15778889999666665544
No 70
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=36.72 E-value=98 Score=20.54 Aligned_cols=66 Identities=20% Similarity=0.058 Sum_probs=33.8
Q ss_pred HhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHH---HHHHHHHHHHHHHhCCCcE-EEEEe
Q 027669 135 NLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNF---NLKLKEAVVQLRKDFPSAA-FTYVD 203 (220)
Q Consensus 135 ~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~---N~~L~~~l~~l~~~~~g~~-i~~~D 203 (220)
=-|||.|+|+.++=..-.|..... .....+....+..--..| -++|+.+.+.|+++.|+.+ -+++|
T Consensus 8 ~p~arSvIv~a~~Y~~~~~~~~~~---~~~~~g~iarYA~G~DYH~vlk~~L~~l~~~i~~~~~~~~~r~~VD 77 (78)
T PF08331_consen 8 LPGARSVIVLAFPYYPEPPPPPPP---PGPGRGRIARYAWGRDYHKVLKKKLEQLAEWIRELGPDFEYRIFVD 77 (78)
T ss_pred CCCCcEEEEEEccCCCcccccccc---CCCCCeeEeehhccCChHHHHHHHHHHHHHHHHHHCCCCCeEEeec
Confidence 358999999987754411110000 011223333333222233 3577777777888888753 33555
No 71
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=36.64 E-value=15 Score=27.57 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=14.0
Q ss_pred HhCCeEEEEccCCCCc
Q 027669 135 NLGARSFWIHNTGPIG 150 (220)
Q Consensus 135 ~~GAr~~~V~~lpplG 150 (220)
..|||+||++|+|.+.
T Consensus 42 ~~GARdFVfwNipQiQ 57 (169)
T KOG4079|consen 42 QSGARDFVFWNIPQIQ 57 (169)
T ss_pred ccCccceEEecchhhc
Confidence 5799999999999864
No 72
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=36.41 E-value=40 Score=25.72 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCC
Q 027669 126 FSANVKSIYNLGARSFWIHNTGPI 149 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~~lppl 149 (220)
+.+.|++|.+.|+++++|+-+-|.
T Consensus 101 i~~~l~~l~~~g~~~iivlPl~P~ 124 (159)
T cd03411 101 IEEALEELKADGVDRIVVLPLYPQ 124 (159)
T ss_pred HHHHHHHHHHcCCCEEEEEECCcc
Confidence 345678999999999999887664
No 73
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=36.02 E-value=1.1e+02 Score=28.77 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=12.2
Q ss_pred ceEEEEechhhhhhh
Q 027669 91 ALYTFDIGQNDLGAG 105 (220)
Q Consensus 91 sL~~i~iG~ND~~~~ 105 (220)
-+=+++||.||....
T Consensus 444 ~vDf~sIGtnDLsqy 458 (565)
T TIGR01417 444 EVDFFSIGTNDLTQY 458 (565)
T ss_pred hCCEEEEChhHHHHH
Confidence 566889999999763
No 74
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=34.36 E-value=94 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027669 169 AKPYNEVAKNFNLKLKEAVVQLRKDFP 195 (220)
Q Consensus 169 ~~~~n~~~~~~N~~L~~~l~~l~~~~~ 195 (220)
.++.+.+...||..|++.|.++.+++.
T Consensus 57 e~q~~~~~~rF~~~L~~~L~~yq~~H~ 83 (112)
T TIGR02744 57 EAQQKALLGRFNALLEAELQAWQAQHH 83 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356778999999999999999998864
No 75
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=33.09 E-value=1.8e+02 Score=25.05 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEEEc
Q 027669 120 PDIINKFSANVKSIYNLGARSFWIH 144 (220)
Q Consensus 120 ~~~v~~~~~~i~~L~~~GAr~~~V~ 144 (220)
++-+..+.+-++.|+++|+|.|.|+
T Consensus 87 ~~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 87 EEDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp HHHHHHHHHHHHHHHCTT--EEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3456667777899999999999776
No 76
>PRK08194 tartrate dehydrogenase; Provisional
Probab=32.95 E-value=45 Score=29.29 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...+..++||++.+-..-+.++.+.+++||.+|.
T Consensus 198 ~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fD 233 (352)
T PRK08194 198 DEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFD 233 (352)
T ss_pred HHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCc
Confidence 345556678899988888888888999999999884
No 77
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=32.57 E-value=57 Score=28.55 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...+..++||++++-..-+.++.+.++.+|.+|.
T Consensus 198 ~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fD 233 (344)
T PRK03437 198 QRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFD 233 (344)
T ss_pred HHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCc
Confidence 445566778899988887777788899999999885
No 78
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.34 E-value=75 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHH
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLF 212 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii 212 (220)
.-.+.+|..+||++.|+.+|... ..++.
T Consensus 40 ~P~~~~La~~y~~v~Flkvdvde-~~~~~ 67 (106)
T KOG0907|consen 40 APKFEKLAEKYPDVVFLKVDVDE-LEEVA 67 (106)
T ss_pred hhHHHHHHHHCCCCEEEEEeccc-CHhHH
Confidence 44788899999999999999997 54443
No 79
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.34 E-value=51 Score=23.33 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCeEEEE
Q 027669 127 SANVKSIYNLGARSFWI 143 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V 143 (220)
.+.+++|.+.|+|+|+|
T Consensus 45 ~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 45 DDVLAKLKKAGIKKVTL 61 (103)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 44567889999999977
No 80
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=32.33 E-value=42 Score=24.76 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCeEEEEc
Q 027669 126 FSANVKSIYNLGARSFWIH 144 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~ 144 (220)
+.+.+++|.+.|+++|+|+
T Consensus 46 l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 46 WRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 4556789999999999986
No 81
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=31.75 E-value=2.6e+02 Score=24.58 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 027669 126 FSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVY 205 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y 205 (220)
+.+.++.|.+.+..-+.++++--+.|+|.++.... . ..|+.+.+-..+-.+.. .-+++.-.|...+++.+|+-
T Consensus 90 lr~~~~~l~~~~l~~~~iPgVi~LptVP~~RK~N~--I-DmGTaDKva~a~lai~~----~~~~~gi~y~~~nfIlvEiG 162 (343)
T PF07318_consen 90 LRKLVRELAESNLPAYFIPGVIHLPTVPAWRKINR--I-DMGTADKVASAALAIYD----QAEREGIEYREVNFILVEIG 162 (343)
T ss_pred HHHHHHHHHhCCCCEEEeCceeccCCCchHhhhcc--c-ccCcHhHHHHHHHHHHh----hHHhhCCCcccceEEEEEcc
Confidence 56667777788889999999999999999887632 2 34677765554433222 22233334667799998875
Q ss_pred hH
Q 027669 206 SV 207 (220)
Q Consensus 206 ~~ 207 (220)
.-
T Consensus 163 ~~ 164 (343)
T PF07318_consen 163 SG 164 (343)
T ss_pred CC
Confidence 43
No 82
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=31.74 E-value=1.2e+02 Score=27.74 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 027669 124 NKFSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVD 203 (220)
Q Consensus 124 ~~~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D 203 (220)
..+.+-|+.||+.|+|+|=+ +-..|.=++... +.++....-|- +.|++.....|.--|+++....|
T Consensus 218 e~Vv~EVkaLY~~GvrhFRl---GRQ~difsy~~~-----~~g~e~P~PnP------ealekL~~Gir~~AP~l~tLHiD 283 (560)
T COG1031 218 EDVVEEVKALYRAGVRHFRL---GRQADIFSYGAD-----DNGGEVPRPNP------EALEKLFRGIRNVAPNLKTLHID 283 (560)
T ss_pred HHHHHHHHHHHHhccceeee---ccccceeeeccc-----ccCCCCCCCCH------HHHHHHHHHHHhhCCCCeeeeec
Confidence 34556679999999999954 444444444332 11222333332 23445555666666888888888
Q ss_pred cchH
Q 027669 204 VYSV 207 (220)
Q Consensus 204 ~y~~ 207 (220)
--+.
T Consensus 284 NaNP 287 (560)
T COG1031 284 NANP 287 (560)
T ss_pred CCCc
Confidence 6543
No 83
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=31.67 E-value=77 Score=27.97 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...+..++||++.+-..=+.++.+.++++|+.|.
T Consensus 206 ~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~fD 241 (360)
T PLN00123 206 LESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFD 241 (360)
T ss_pred HHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccCc
Confidence 445566677899998888888889999999999884
No 84
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=31.57 E-value=1.2e+02 Score=25.82 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=13.4
Q ss_pred CceEEEEechhhhhhhhc
Q 027669 90 KALYTFDIGQNDLGAGFF 107 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~~ 107 (220)
+-+=+++||+||.....+
T Consensus 196 ~~~DF~SIGtNDLtQy~l 213 (293)
T PF02896_consen 196 KEVDFFSIGTNDLTQYTL 213 (293)
T ss_dssp TTSSEEEEEHHHHHHHHH
T ss_pred HHCCEEEEChhHHHHHHh
Confidence 336688999999987443
No 85
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=31.57 E-value=69 Score=28.14 Aligned_cols=36 Identities=8% Similarity=0.361 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...+..++||++++-..=+.++.+.++.+|.+|.
T Consensus 201 ~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fD 236 (352)
T TIGR02089 201 DEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFD 236 (352)
T ss_pred HHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCc
Confidence 345566678899988887777888999999999884
No 86
>smart00340 HALZ homeobox associated leucin zipper.
Probab=30.37 E-value=54 Score=19.38 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027669 177 KNFNLKLKEAVVQLRKD 193 (220)
Q Consensus 177 ~~~N~~L~~~l~~l~~~ 193 (220)
..=|.+|+..|++||+.
T Consensus 18 teeNrRL~ke~~eLral 34 (44)
T smart00340 18 TEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34699999999999864
No 87
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=30.23 E-value=77 Score=27.90 Aligned_cols=31 Identities=16% Similarity=0.509 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCeEEEEcc
Q 027669 115 VNESIPDIINKFSANVKSIYNLGARSFWIHN 145 (220)
Q Consensus 115 ~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~ 145 (220)
..+++.+++..+.+.++.|+++|+|.|-+=.
T Consensus 161 ~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDe 191 (368)
T PRK06520 161 LDDYFDDLAKTWRDAIKAFYDAGCRYLQLDD 191 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 4578899999999999999999999986643
No 88
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=29.26 E-value=81 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 183 LKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 183 L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
.++...+..++||++.+-..=+.++.+.++++|..|.
T Consensus 182 f~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fd 218 (333)
T TIGR00175 182 FLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFD 218 (333)
T ss_pred HHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCccccc
Confidence 3445566667799988888888889999999999874
No 89
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=29.16 E-value=1.7e+02 Score=25.32 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCeEEEEccCCCC
Q 027669 127 SANVKSIYNLGARSFWIHNTGPI 149 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V~~lppl 149 (220)
.+.+++|.+.|.++++++-+-|.
T Consensus 105 ~~~v~~l~~~gv~~iv~~pLyPq 127 (320)
T COG0276 105 EEAVEELKKDGVERIVVLPLYPQ 127 (320)
T ss_pred HHHHHHHHHcCCCeEEEEECCcc
Confidence 45678999999999999887663
No 90
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=29.07 E-value=98 Score=27.29 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 182 KLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 182 ~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
..++...++.++||++.+-..=+.++.+.++++|..|.
T Consensus 200 lf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fD 237 (358)
T PRK00772 200 LWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFD 237 (358)
T ss_pred HHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCe
Confidence 33455566777899988888888889999999999884
No 91
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=28.78 E-value=77 Score=21.57 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCeEEEEccCCCC
Q 027669 127 SANVKSIYNLGARSFWIHNTGPI 149 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V~~lppl 149 (220)
.+.+++|.+.|.++++|+-+.+.
T Consensus 48 ~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 48 EEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred HHHHHHHHHcCCCeEEEEeCccc
Confidence 34578899999999998665543
No 92
>PRK06233 hypothetical protein; Provisional
Probab=28.56 E-value=85 Score=27.67 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCeEEEEcc
Q 027669 115 VNESIPDIINKFSANVKSIYNLGARSFWIHN 145 (220)
Q Consensus 115 ~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~ 145 (220)
..+++.+++..+.+.++.|+++|+|.|-+=.
T Consensus 162 ~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDe 192 (372)
T PRK06233 162 WDDYLDDLAQAYHDTIQHFYDLGARYIQLDD 192 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 3578899999999999999999999986644
No 93
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=28.55 E-value=4.2e+02 Score=23.49 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=55.8
Q ss_pred hcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcHHHhcCCceEEEEech--hhhhhhhcCC
Q 027669 32 TAASTIRLPTRIIPGGGFSPFYLDVQLQQFSQFKNRSQIIRNRGGIFASLMPREEYFSKALYTFDIGQ--NDLGAGFFGN 109 (220)
Q Consensus 32 ~gGA~~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sL~~i~iG~--ND~~~~~~~~ 109 (220)
+||-.++..|+. ..|+|-+.++..+.......+ ....+ -.++..|- -||...++..
T Consensus 167 vGGISILGTTGI-----v~P~S~~a~~~si~~~l~~~r----------------~~~~~-~iv~~~Gn~g~~~a~~~~~~ 224 (367)
T COG1903 167 VGGISILGTTGI-----VEPMSEEAYLASIRSELDVAR----------------AAGLD-HVVFCPGNTGEDYARKLFIL 224 (367)
T ss_pred ccceEeecCCcc-----cCcCChHHHHHHHHHHHHHHH----------------hcCCc-EEEEccChhHHHHHHHhcCC
Confidence 578888888876 368898888888765544322 11122 23345563 3555554422
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCC
Q 027669 110 MSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGP 148 (220)
Q Consensus 110 ~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpp 148 (220)
.. ..+-.+-+-+...|+...+.|.+++++++.|-
T Consensus 225 ~~-----~~~v~~~n~vG~~l~~a~~~~~~~i~i~G~pG 258 (367)
T COG1903 225 PE-----QAIVKMGNFVGSMLKEARELGVKEILIFGHPG 258 (367)
T ss_pred ch-----HHHhhHHHHHHHHHHHHHhcCCCEEEEEcChH
Confidence 21 12334445566677888888999999999873
No 94
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=28.54 E-value=1e+02 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...+..++||++.+-..=+.++.+.++.+|.+|.
T Consensus 185 ~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fd 220 (334)
T PRK08997 185 LKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFD 220 (334)
T ss_pred HHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCc
Confidence 344556667899988877777778899999999884
No 95
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=28.26 E-value=81 Score=26.30 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEccC
Q 027669 122 IINKFSANVKSIYNLGARSFWIHNT 146 (220)
Q Consensus 122 ~v~~~~~~i~~L~~~GAr~~~V~~l 146 (220)
++.-+.+..+.|+..|.|||+++|=
T Consensus 88 ~~~~~~~~~~Sl~~~Gfrk~v~vNg 112 (250)
T COG1402 88 LIALLVELVESLARHGFRKFVIVNG 112 (250)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEec
Confidence 3444556678899999999999883
No 96
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=28.19 E-value=2.9e+02 Score=24.27 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHH-HHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027669 117 ESIPDIINKFSANVK-SIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFP 195 (220)
Q Consensus 117 ~~~~~~v~~~~~~i~-~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~ 195 (220)
.|...+++.+.+.++ .|...|.++++|.+ | ..=|.+|+++++++.+. .
T Consensus 240 sfQ~av~~~L~~kt~rAl~~~~~~~lvi~G---------------------G---------VaaN~~LR~~l~~~~~~-~ 288 (342)
T COG0533 240 SFQEAVFDMLVEKTERALKHTGKKELVIAG---------------------G---------VAANSRLREMLEEMCKE-R 288 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEec---------------------c---------HHHhHHHHHHHHHHHHh-c
Confidence 566667776666555 45578999988855 1 13478899999988763 5
Q ss_pred CcEEEEEe
Q 027669 196 SAAFTYVD 203 (220)
Q Consensus 196 g~~i~~~D 203 (220)
|.++++.+
T Consensus 289 g~~~~~p~ 296 (342)
T COG0533 289 GAEVYIPP 296 (342)
T ss_pred CCEEEcCC
Confidence 66666544
No 97
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=28.06 E-value=1.9e+02 Score=23.11 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCC--eEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 027669 125 KFSANVKSIYNLGA--RSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYV 202 (220)
Q Consensus 125 ~~~~~i~~L~~~GA--r~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~ 202 (220)
++..+++.|.+.|+ ++|+++++- |. ...++++.+++|+++|+.+
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~i--------------------as--------------~~Gl~~l~~~~P~v~I~ta 181 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVI--------------------AS--------------PEGLERLLKAFPDVRIYTA 181 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEE--------------------EE--------------HHHHHHHHHHSTTSEEEEE
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEE--------------------ec--------------HHHHHHHHHhCCCeEEEEE
Confidence 45567888989887 799888752 11 2467778888999998876
Q ss_pred ec
Q 027669 203 DV 204 (220)
Q Consensus 203 D~ 204 (220)
-+
T Consensus 182 ~i 183 (207)
T PF14681_consen 182 AI 183 (207)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 98
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=28.05 E-value=95 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=29.6
Q ss_pred HHHHHHHHH-hCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRK-DFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~-~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...++.+ +||++.+-..-+.++.+.++++|..|.
T Consensus 197 ~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fd 233 (348)
T PF00180_consen 197 REVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFD 233 (348)
T ss_dssp HHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGES
T ss_pred HHHHHHHHHhhcceeEeeeeechhhhheeecCCccee
Confidence 444555655 899999999999999999999999875
No 99
>PLN02541 uracil phosphoribosyltransferase
Probab=27.81 E-value=1.3e+02 Score=24.96 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCe--EEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 027669 125 KFSANVKSIYNLGAR--SFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYV 202 (220)
Q Consensus 125 ~~~~~i~~L~~~GAr--~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~ 202 (220)
++..+++.|.+.|++ +|.++++- . | ...|+.+.+.+|+++|+.+
T Consensus 172 S~~~ai~~L~~~Gv~~~~I~~v~~i--a-----------------s---------------~~Gl~~i~~~fP~v~I~ta 217 (244)
T PLN02541 172 TIVAAIDELVSRGASVEQIRVVCAV--A-----------------A---------------PPALKKLSEKFPGLHVYAG 217 (244)
T ss_pred HHHHHHHHHHHcCCCcccEEEEEEE--E-----------------C---------------HHHHHHHHHHCcCCEEEEE
Confidence 567788999999998 88887752 0 1 2466777788999999887
Q ss_pred ecchHH
Q 027669 203 DVYSVK 208 (220)
Q Consensus 203 D~y~~~ 208 (220)
-+..-+
T Consensus 218 ~ID~~L 223 (244)
T PLN02541 218 IIDEEV 223 (244)
T ss_pred EECccc
Confidence 665444
No 100
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=27.66 E-value=48 Score=20.36 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=11.8
Q ss_pred hHHHHHHhCccccC
Q 027669 206 SVKYSLFRNPKRYG 219 (220)
Q Consensus 206 ~~~~~ii~nP~~yG 219 (220)
+.+...++||..||
T Consensus 35 ~~Ir~yl~dP~~yg 48 (50)
T PF11427_consen 35 TCIRRYLKDPVNYG 48 (50)
T ss_dssp HHHHHHHHSCCCTT
T ss_pred HHHHHHhcChhhcc
Confidence 46888899999998
No 101
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=27.58 E-value=94 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 182 KLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 182 ~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
..++...+..++||++++-..=+.++.+.++++|.+|.
T Consensus 220 lf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fD 257 (372)
T PLN00118 220 LFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFD 257 (372)
T ss_pred HHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCc
Confidence 34455667778899988777777788899999999874
No 102
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=27.14 E-value=50 Score=30.85 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=43.8
Q ss_pred HhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHH--HHHHHHHHHHHHHH-HHHHHhCCCc----EEEEEecchH
Q 027669 135 NLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYN--EVAKNFNLKLKEAV-VQLRKDFPSA----AFTYVDVYSV 207 (220)
Q Consensus 135 ~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n--~~~~~~N~~L~~~l-~~l~~~~~g~----~i~~~D~y~~ 207 (220)
+.|.|.-++.|+.-.|.+=.+.. ..+.+| .++-+||..|.+.| .+++.-+|.- -+.|+|.|..
T Consensus 29 ~~g~~~QtLLGvTGSGKTfT~An----------VI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQP 98 (663)
T COG0556 29 ENGLKHQTLLGVTGSGKTFTMAN----------VIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQP 98 (663)
T ss_pred hcCceeeEEeeeccCCchhHHHH----------HHHHhCCCeEEEecchhHHHHHHHHHHHhCcCcceEEEeeeccccCc
Confidence 67999999999888887633221 122222 56788999998876 7888888863 4567787753
No 103
>PRK00035 hemH ferrochelatase; Reviewed
Probab=26.84 E-value=1.4e+02 Score=25.73 Aligned_cols=44 Identities=9% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 027669 126 FSANVKSIYNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKE 185 (220)
Q Consensus 126 ~~~~i~~L~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~ 185 (220)
+.+.+++|.+.|.|+++| .|..... .|++.+.++...+...+.+
T Consensus 250 ~~~~l~~l~~~g~k~V~v--------~P~~Fv~--------D~lEtl~ei~~e~~~~~~~ 293 (333)
T PRK00035 250 TDDTLEELAEKGVKKVVV--------VPPGFVS--------DHLETLEEIDIEYREIAEE 293 (333)
T ss_pred HHHHHHHHHHcCCCeEEE--------ECCeeec--------cchhHHHHHHHHHHHHHHH
No 104
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=26.74 E-value=1.1e+02 Score=26.78 Aligned_cols=36 Identities=14% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
++...+..++||++++-..=+.++...++++|.+|.
T Consensus 199 ~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fD 234 (349)
T TIGR00169 199 RKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFD 234 (349)
T ss_pred HHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCce
Confidence 445556667899988888778888999999999874
No 105
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=26.15 E-value=1.5e+02 Score=24.03 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHH
Q 027669 170 KPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVK 208 (220)
Q Consensus 170 ~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~ 208 (220)
.........|-..|..+++.+++..|+++|++.-.+.++
T Consensus 120 ~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~ 158 (259)
T cd01823 120 GARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLF 158 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccc
Confidence 334455678888999999999999999999888766554
No 106
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=25.89 E-value=2.5e+02 Score=23.42 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=69.7
Q ss_pred CCceEEEEechhhhhhhh-----cCCC--Ch----h-hh----hhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCccc
Q 027669 89 SKALYTFDIGQNDLGAGF-----FGNM--SV----E-EV----NESIPDIINKFSANVKSIYNLGARSFWIHNTGPIGCL 152 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~-----~~~~--~~----~-~~----~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplGc~ 152 (220)
+-+++++..|..-....- ..+. .. + +. .--++++++.+...++.|....-.-=+|+++.|+
T Consensus 101 ~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTVSPV--- 177 (251)
T PF08885_consen 101 EADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTVSPV--- 177 (251)
T ss_pred hCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccc---
Confidence 456788899987754321 0110 00 0 11 1335778888888888887776555577788885
Q ss_pred hhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCcccc
Q 027669 153 PYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRY 218 (220)
Q Consensus 153 P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~y 218 (220)
|...+. ++.|+ -..|++++ +.|+..+.+|.++++ ++.||=.|.++++-..++.-|
T Consensus 178 rl~~T~--~~~d~----~~an~~SK---s~Lr~a~~~l~~~~~--~v~YFPSYEiv~d~lrdyrfy 232 (251)
T PF08885_consen 178 RLIATF--RDRDG----LVANQYSK---STLRAAAHELVRAFD--DVDYFPSYEIVMDELRDYRFY 232 (251)
T ss_pred hhhccc--ccccc----hhhhhhhH---HHHHHHHHHHHhcCC--CceEcchHhhccCcccccccc
Confidence 443322 11221 22344444 367788888887654 678888888888776666544
No 107
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=25.00 E-value=2.1e+02 Score=26.97 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=13.0
Q ss_pred CceEEEEechhhhhhhh
Q 027669 90 KALYTFDIGQNDLGAGF 106 (220)
Q Consensus 90 ~sL~~i~iG~ND~~~~~ 106 (220)
+-+=+++||.||.....
T Consensus 444 ~~vDf~sIGtnDL~qy~ 460 (575)
T PRK11177 444 KEVDFFSIGTNDLTQYT 460 (575)
T ss_pred hhCCEEEECcHHHHHHH
Confidence 45668899999998743
No 108
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=24.88 E-value=2.2e+02 Score=21.97 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 027669 173 NEVAKNFNLKLKEAVVQLRKDFPSAAFTYVDVY 205 (220)
Q Consensus 173 n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D~y 205 (220)
....+.|=..|+.+++.++++.|+++|+++..+
T Consensus 98 ~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~ 130 (204)
T cd04506 98 KKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLY 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 344567888999999999999999998887654
No 109
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=24.52 E-value=77 Score=25.97 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEccCCCCc-cchhhhhcCCCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHhC-
Q 027669 118 SIPDIINKFSANVKSIYNLGARSFWIHNTGPIG-CLPYILANFPSAKDSAGCAKPYNEVA-KNFNLKLKEAVVQLRKDF- 194 (220)
Q Consensus 118 ~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpplG-c~P~~~~~~~~~~d~~~c~~~~n~~~-~~~N~~L~~~l~~l~~~~- 194 (220)
.+.++|..+-.+++-+.+.|. + |. ||...+.+++ ..++-.+...+++|+...
T Consensus 7 tigeIv~~~P~aa~VF~~~gI-----------dfCc--------------gg~~tLeeA~~~~~gld~~~ll~eLn~~~~ 61 (224)
T PRK13276 7 IVADVVTDYPKAADIFRSVGI-----------DFCC--------------GGQVSIEAASLEKKNVDLNELLQRLNDVEQ 61 (224)
T ss_pred CHHHHHHhCccHHHHHHHcCC-----------CcCC--------------CCChhHHHHHHHHcCCCHHHHHHHHHHHhh
Confidence 356777777777788877773 4 43 6788899998 999988888888887643
Q ss_pred ----CCcEEEEEecchHHHHHHh
Q 027669 195 ----PSAAFTYVDVYSVKYSLFR 213 (220)
Q Consensus 195 ----~g~~i~~~D~y~~~~~ii~ 213 (220)
.+.++.....-.++..|++
T Consensus 62 ~~~~~~~~~~~~~~~~Lid~I~~ 84 (224)
T PRK13276 62 TNTPGSLNPKFLNVSSLIQYIQS 84 (224)
T ss_pred ccccCccChhhCCHHHHHHHHHH
Confidence 1223333444445555544
No 110
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=24.38 E-value=3e+02 Score=23.15 Aligned_cols=45 Identities=4% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCceEEEEechhhhhhhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHhCCeEEEEccCCC
Q 027669 89 SKALYTFDIGQNDLGAGFFGNMSVEEVNESIPDIINKFSANVKSIYNLGARSFWIHNTGP 148 (220)
Q Consensus 89 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~~lpp 148 (220)
++..++|-+|+|=+- + ++.++.+...+.-|...|.|-++|.+-+|
T Consensus 34 ~~~f~VIK~GG~~~~-----~----------~~~~~~l~~dla~L~~lGl~~VlVHGggp 78 (271)
T cd04236 34 WPAFAVLEVDHSVFR-----S----------LEMVQSLSFGLAFLQRMDMKLLVVMGLSA 78 (271)
T ss_pred CCCEEEEEEChhhhc-----C----------chhHHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 467788899986431 1 12345566677899999999999999876
No 111
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=23.79 E-value=1.3e+02 Score=26.14 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 182 KLKEAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 182 ~L~~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
..++...+..++||++.+-..=+.++.+.++.+|.+|.
T Consensus 180 lf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fD 217 (330)
T PRK14025 180 LFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFD 217 (330)
T ss_pred HHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCc
Confidence 33445556667899987777777788899999999884
No 112
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=23.78 E-value=1.2e+02 Score=26.39 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCeEEEEc
Q 027669 115 VNESIPDIINKFSANVKSIYNLGARSFWIH 144 (220)
Q Consensus 115 ~~~~~~~~v~~~~~~i~~L~~~GAr~~~V~ 144 (220)
..+++.++...+.+.++.|+++|+|.|-+=
T Consensus 147 ~~el~~dlA~al~~Ei~~L~~aG~~~IQiD 176 (339)
T PRK09121 147 REKLAWEFAKILNQEAKELEAAGVDIIQFD 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEec
Confidence 357888999999999999999999998663
No 113
>PF14294 DUF4372: Domain of unknown function (DUF4372)
Probab=23.22 E-value=88 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCeE
Q 027669 119 IPDIINKFSANVKSIYNLGARS 140 (220)
Q Consensus 119 ~~~~v~~~~~~i~~L~~~GAr~ 140 (220)
+.++.+.+...-.+||.+|.|+
T Consensus 55 LRdI~~~l~a~~~klyHlG~~~ 76 (76)
T PF14294_consen 55 LRDIEDCLNAHSSKLYHLGIKH 76 (76)
T ss_pred HHHHHHHHHHhHHHHhhcCCCC
Confidence 5678888888889999999874
No 114
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=23.22 E-value=1.4e+02 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCcEEEEEecchH
Q 027669 184 KEAVVQLRKDFPSAAFTYVDVYSV 207 (220)
Q Consensus 184 ~~~l~~l~~~~~g~~i~~~D~y~~ 207 (220)
...+.+|.+++|+.+++.+|....
T Consensus 41 ~p~l~~la~~~~~i~f~~Vd~~~~ 64 (113)
T cd02989 41 DKHLEILAKKHLETKFIKVNAEKA 64 (113)
T ss_pred HHHHHHHHHHcCCCEEEEEEcccC
Confidence 456666777789999999999874
No 115
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.87 E-value=2.5e+02 Score=24.62 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCCeEEEEc-cCCCC
Q 027669 123 INKFSANVKSIYNLGARSFWIH-NTGPI 149 (220)
Q Consensus 123 v~~~~~~i~~L~~~GAr~~~V~-~lppl 149 (220)
.+.+.+.++.+.+.|+++|.++ +-+|.
T Consensus 106 ~eEI~~~a~~~~~~Gv~~i~lvgGe~p~ 133 (371)
T PRK09240 106 EEEIEREMAAIKKLGFEHILLLTGEHEA 133 (371)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 3455666777889999999554 44443
No 116
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.36 E-value=2.4e+02 Score=22.88 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHh-CCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 027669 125 KFSANVKSIYNL-GARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAAFTYVD 203 (220)
Q Consensus 125 ~~~~~i~~L~~~-GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~i~~~D 203 (220)
++..+++.|.+. |+++|.++++-. + ...++.+.+.+|+++|+.+-
T Consensus 139 s~i~ai~~L~~~G~~~~I~~v~~vA---a-------------------------------peGi~~v~~~~p~v~I~ta~ 184 (210)
T COG0035 139 SAIAAIDLLKKRGGPKNIKVVSLVA---A-------------------------------PEGIKAVEKAHPDVEIYTAA 184 (210)
T ss_pred hHHHHHHHHHHhCCCceEEEEEEEe---c-------------------------------HHHHHHHHHhCCCCeEEEEE
Confidence 455678999999 999998877521 1 23566677778999888765
Q ss_pred cch
Q 027669 204 VYS 206 (220)
Q Consensus 204 ~y~ 206 (220)
+..
T Consensus 185 iD~ 187 (210)
T COG0035 185 IDE 187 (210)
T ss_pred ecc
Confidence 544
No 117
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.07 E-value=2.3e+02 Score=24.80 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhCCeEEEEc-cCCC
Q 027669 123 INKFSANVKSIYNLGARSFWIH-NTGP 148 (220)
Q Consensus 123 v~~~~~~i~~L~~~GAr~~~V~-~lpp 148 (220)
.+.+.+.++.+.+.|+++|.++ +-+|
T Consensus 105 ~eEI~~~a~~~~~~Gv~~i~lvgGe~p 131 (366)
T TIGR02351 105 EEEIEREIEAIKKSGFKEILLVTGESE 131 (366)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 4566677788889999999766 4434
No 118
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.87 E-value=5.3e+02 Score=22.62 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEe
Q 027669 179 FNLKLKEAVVQLRKDFPSAAFTYVD 203 (220)
Q Consensus 179 ~N~~L~~~l~~l~~~~~g~~i~~~D 203 (220)
=|..|++++.++.++ .+.++++..
T Consensus 275 aN~~LR~~l~~~~~~-~~~~~~~p~ 298 (345)
T PTZ00340 275 CNLRLQEMMQQMAKE-RGGKLFAMD 298 (345)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCC
Confidence 367778888777655 466766654
No 119
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=21.64 E-value=2.1e+02 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEecchH
Q 027669 183 LKEAVVQLRKDFPSAAFTYVDVYSV 207 (220)
Q Consensus 183 L~~~l~~l~~~~~g~~i~~~D~y~~ 207 (220)
+...++++.+++++.+++.+|....
T Consensus 42 l~~~l~~la~~~~~v~f~~vd~~~~ 66 (113)
T cd02957 42 LDSHLEELAAKYPETKFVKINAEKA 66 (113)
T ss_pred HHHHHHHHHHHCCCcEEEEEEchhh
Confidence 3456666777788999999999864
No 120
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=21.64 E-value=5e+02 Score=23.17 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHH-HHhCCeEEEEccCCCCccchhhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Q 027669 120 PDIINKFSANVKSI-YNLGARSFWIHNTGPIGCLPYILANFPSAKDSAGCAKPYNEVAKNFNLKLKEAVVQLRKDFPSAA 198 (220)
Q Consensus 120 ~~~v~~~~~~i~~L-~~~GAr~~~V~~lpplGc~P~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~g~~ 198 (220)
+++.+.+.+.+.++ .+.|...|-.=..-.++. .+.....+....|-..|.+++++|++++|++.
T Consensus 165 pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~---------------~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~ 229 (394)
T PF02065_consen 165 PEVRDYLFEVIDRLLREWGIDYIKWDFNRDITE---------------AGSPSLPEGYHRYVLGLYRLLDRLRARFPDVL 229 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS----------------SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeccccCCCC---------------CCCCCchHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 45566666666664 578888884422222211 01111115566777788899999999999987
Q ss_pred EEEEe
Q 027669 199 FTYVD 203 (220)
Q Consensus 199 i~~~D 203 (220)
|--+.
T Consensus 230 iE~Cs 234 (394)
T PF02065_consen 230 IENCS 234 (394)
T ss_dssp EEE-B
T ss_pred EEecc
Confidence 76554
No 121
>PRK12435 ferrochelatase; Provisional
Probab=20.66 E-value=3.8e+02 Score=22.98 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCeEEEEccCCCC
Q 027669 127 SANVKSIYNLGARSFWIHNTGPI 149 (220)
Q Consensus 127 ~~~i~~L~~~GAr~~~V~~lppl 149 (220)
.+.+++|.+.|+++++++-+-|.
T Consensus 93 ~~~l~~l~~~g~~~iv~lpLyPq 115 (311)
T PRK12435 93 EDAVEQMHNDGIEEAISIVLAPH 115 (311)
T ss_pred HHHHHHHHHcCCCeEEEEECCCc
Confidence 45678899999999999988774
No 122
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=20.18 E-value=2.4e+02 Score=20.34 Aligned_cols=25 Identities=8% Similarity=0.287 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Q 027669 170 KPYNEVAKNFNLKLKEAVVQLRKDF 194 (220)
Q Consensus 170 ~~~n~~~~~~N~~L~~~l~~l~~~~ 194 (220)
++....+..||..|.+.|.++.+++
T Consensus 57 ~q~~a~t~~F~~aL~~~L~~~~~~h 81 (111)
T PF09677_consen 57 EQVEALTQRFMQALEASLAEYQAEH 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566789999999999999998764
No 123
>PLN02329 3-isopropylmalate dehydrogenase
Probab=20.17 E-value=82 Score=28.28 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCcEEEEEecchHHHHHHhCccccC
Q 027669 185 EAVVQLRKDFPSAAFTYVDVYSVKYSLFRNPKRYG 219 (220)
Q Consensus 185 ~~l~~l~~~~~g~~i~~~D~y~~~~~ii~nP~~yG 219 (220)
+...+..++||++++-..-+..+.+.+++||.+|.
T Consensus 248 ~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FD 282 (409)
T PLN02329 248 KRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFD 282 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCC
Confidence 34456667899987777777778899999999885
Done!