BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027671
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 19/212 (8%)
Query: 1 MAKSSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQF 60
MA +SG + QKLP ++ YTE +A +YALGVGA +D D LK++Y G
Sbjct: 1 MAATSGFAGAI--GQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSD 53
Query: 61 IQVLPTFSALFSFE-LEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIA 119
LPTF + + + G ++PGL + +LHG+QY+ELYKP P + ++ EA +A
Sbjct: 54 FSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVA 113
Query: 120 GLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSV 179
+ DKG ++ ++ SY+ + EL+C N+ + FL G+GGF K + V V
Sbjct: 114 DVLDKGSGVVIIMDVYSYSEK--ELICHNQFSLFLVGSGGFGG--------KRTSDKVKV 163
Query: 180 -VKIPKSQPFAVFEDYTQPSQACSIKFHYCWN 210
V IP P AV D T +QA + WN
Sbjct: 164 AVAIPNRPPDAVLTDTTSLNQAALYRLSGDWN 195
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
E F + ++ YALG+GA ++A D ++++Y EN F +PTF L L+ S
Sbjct: 322 EDAFEFNSKELITYALGIGASVKNAKD---MRFLY-ENDADF-AAIPTFFVLPGLLLQMS 376
Query: 79 G----AIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIET 134
+ LP Q D +LHG+QY+E+ P+S ++ + + DKG A++ +
Sbjct: 377 TDKLLSKALPNSQVDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAVVVTNS 436
Query: 135 KSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDY 194
+S++ ESG LL N+ T F+ GAG F P + +P+ P QP A +
Sbjct: 437 ESFD-ESGRLLVRNQSTTFIVGAGKFGGKKDPIA----GVVPLQ--PAPNRQPDATVQYT 489
Query: 195 TQPSQAC 201
T QA
Sbjct: 490 TSEDQAA 496
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 89/198 (44%), Gaps = 45/198 (22%)
Query: 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFS 72
+ QKLP ++ YTE +A +YALGVGA +D D LK++Y G LPTF +
Sbjct: 2 IGQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSDFSCLPTFGVI-- 54
Query: 73 FELEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEI 132
+ ++LHG+QY+ELYKP P + ++ EA +A + ++ I
Sbjct: 55 -------------IGQKSMMVLHGEQYLELYKPLPRAGKLKCEAVVADV-------LVVI 94
Query: 133 ETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFE 192
Y+ EL+C N+ + FL + V+V IP P AV
Sbjct: 95 IMDVYSYSEKELICHNQFSLFLS-----------------DKVKVAVA-IPNRPPDAVLT 136
Query: 193 DYTQPSQACSIKFHYCWN 210
D T +QA + WN
Sbjct: 137 DTTSLNQAALYRLSGDWN 154
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F S
Sbjct: 4 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKS 55
Query: 79 GAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKS 136
L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +KS
Sbjct: 56 QNSFAKLLRNFNPXLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKS 115
Query: 137 YNAESGELLCMNRMTAFLRG 156
+ +SGEL+ N T F+R
Sbjct: 116 VDNKSGELIYSNEATYFIRN 135
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F S
Sbjct: 4 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKS 55
Query: 79 GAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKS 136
L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +KS
Sbjct: 56 QNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKS 115
Query: 137 YNAESGELLCMNRMTAFLRG 156
+ +SGEL+ N T F+R
Sbjct: 116 VDNKSGELIYSNEATYFIRN 135
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 36/221 (16%)
Query: 4 SSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQV 63
S +N + +L+ T TY +RD +YA+G+G +L++ Y E ++F
Sbjct: 34 SMSVNVDKILNSPEATYTATYNQRDLLMYAVGIGES--------DLQFTY-EFDEKF-SA 83
Query: 64 LPTFSALFSFELEPSGAIDLP---------GL-QHDPRLLLHGQQYMELYKPF-PSSASI 112
P + F+ + + P G+ +P ++LHG+Q +E+ +P PS ++
Sbjct: 84 FPLYPVCLPFKGQSQDVVPFPPETISAAPDGMPSFNPAMILHGEQSVEILRPLDPSGGTL 143
Query: 113 RNEACIAGLHDKGKAAILEIETK--SYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYS 170
+ + +DKGK ++E +T+ N +L+ +F+RG G+
Sbjct: 144 TGKTKVISFYDKGKGTLMETQTQFEDGNGPVAKLIS----GSFIRGLTGYEG-------- 191
Query: 171 KYQTIPVSVVKIPKSQPFAVFEDYTQPSQACSIKFHYCWNS 211
K + +P V+IPK QP E T P QA + +NS
Sbjct: 192 KGRKLPAR-VQIPKRQPDFNDEFKTSPHQAQVYRLSGDYNS 231
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 22 FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI 81
F +T+RD +YA+GVGA D L + + QVLPT++ + + +
Sbjct: 38 FEWTDRDTLLYAIGVGAGTGD------LAFTTENSHGIDQQVLPTYAVICCPAFGAAAKV 91
Query: 82 DLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDK--GKAAILEIETKSYNA 139
+P LLHG Q + L+ P P++ + +A + DK GK AI+ + + +
Sbjct: 92 G----TFNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDP 147
Query: 140 ESGELLCMNRMTAFLR 155
ESG L+ T LR
Sbjct: 148 ESGSLVAETLTTLVLR 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,598,259
Number of Sequences: 62578
Number of extensions: 265618
Number of successful extensions: 526
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 7
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)