Query 027671
Match_columns 220
No_of_seqs 214 out of 926
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 13:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02864 enoyl-CoA hydratase 100.0 2.8E-54 6.1E-59 380.3 23.4 217 1-217 2-218 (310)
2 KOG1206 Peroxisomal multifunct 100.0 3.6E-38 7.7E-43 261.1 0.9 178 22-218 6-183 (272)
3 PF13452 MaoC_dehydrat_N: N-te 99.9 8.3E-26 1.8E-30 175.3 10.3 124 12-148 2-132 (132)
4 PRK13691 (3R)-hydroxyacyl-ACP 99.9 5.6E-22 1.2E-26 160.6 15.0 147 5-158 1-148 (166)
5 PRK13692 (3R)-hydroxyacyl-ACP 99.8 2E-19 4.3E-24 144.7 14.9 146 5-157 1-147 (159)
6 cd03452 MaoC_C MaoC_C The C-t 99.5 4.6E-13 9.9E-18 105.5 11.4 134 13-158 7-142 (142)
7 cd03450 NodN NodN (nodulation 99.5 4.2E-13 9.1E-18 106.9 11.0 141 4-153 4-146 (149)
8 cd03446 MaoC_like MoaC_like 99.4 2.2E-12 4.8E-17 100.5 12.4 131 13-153 7-139 (140)
9 cd03454 YdeM YdeM is a Bacillu 99.4 1.7E-12 3.7E-17 101.4 10.5 132 13-155 6-140 (140)
10 cd03451 FkbR2 FkbR2 is a Strep 99.4 5.2E-12 1.1E-16 99.1 11.4 134 12-157 8-145 (146)
11 cd03449 R_hydratase (R)-hydrat 99.3 6.9E-11 1.5E-15 90.2 12.0 126 13-154 3-128 (128)
12 cd03453 SAV4209_like SAV4209_l 99.3 5E-11 1.1E-15 91.9 10.8 126 13-152 1-126 (127)
13 cd03441 R_hydratase_like (R)-h 99.2 3.1E-10 6.8E-15 86.2 11.8 122 18-151 4-125 (127)
14 cd03455 SAV4209 SAV4209 is a S 99.1 6.5E-10 1.4E-14 85.1 10.1 122 14-152 1-122 (123)
15 PRK08190 bifunctional enoyl-Co 99.0 2.5E-09 5.4E-14 99.6 11.9 129 13-157 16-144 (466)
16 TIGR02278 PaaN-DH phenylacetic 99.0 2.9E-09 6.2E-14 103.1 10.6 131 13-155 530-662 (663)
17 PRK11563 bifunctional aldehyde 98.8 2E-08 4.4E-13 97.4 10.5 131 13-155 542-674 (675)
18 COG2030 MaoC Acyl dehydratase 98.5 1.4E-06 3.1E-11 69.9 10.4 134 12-155 21-155 (159)
19 cd03447 FAS_MaoC FAS_MaoC, the 98.4 4.3E-06 9.4E-11 64.6 11.5 118 20-152 6-123 (126)
20 PRK13693 (3R)-hydroxyacyl-ACP 98.1 5E-05 1.1E-09 59.9 10.7 112 12-138 10-126 (142)
21 PF01575 MaoC_dehydratas: MaoC 97.4 2.8E-05 6E-10 59.4 -0.4 35 183-217 6-41 (122)
22 PF01575 MaoC_dehydratas: MaoC 97.4 9.7E-05 2.1E-09 56.3 2.3 113 12-135 5-118 (122)
23 cd00586 4HBT 4-hydroxybenzoyl- 97.0 0.01 2.3E-07 42.3 9.9 58 92-154 51-108 (110)
24 PRK00006 fabZ (3R)-hydroxymyri 96.9 0.011 2.5E-07 46.2 9.9 59 91-155 87-145 (147)
25 COG3777 Uncharacterized conser 96.8 0.0012 2.5E-08 56.3 3.5 113 87-217 72-191 (273)
26 cd03440 hot_dog The hotdog fol 96.8 0.019 4E-07 38.4 9.0 59 89-152 41-99 (100)
27 TIGR02286 PaaD phenylacetic ac 96.7 0.024 5.2E-07 42.4 9.8 56 93-153 57-112 (114)
28 COG2030 MaoC Acyl dehydratase 96.6 0.00061 1.3E-08 54.6 0.7 31 188-218 28-58 (159)
29 PRK04424 fatty acid biosynthes 96.5 0.024 5.3E-07 46.6 9.1 56 93-154 126-181 (185)
30 TIGR00369 unchar_dom_1 unchara 96.4 0.023 4.9E-07 42.6 8.2 56 92-153 61-116 (117)
31 cd03448 HDE_HSD HDE_HSD The R 96.2 0.022 4.7E-07 43.7 7.1 108 21-149 10-117 (122)
32 PRK10800 acyl-CoA thioesterase 96.2 0.052 1.1E-06 41.3 9.0 60 92-156 53-112 (130)
33 PRK11688 hypothetical protein; 96.1 0.069 1.5E-06 42.3 9.7 57 92-154 97-153 (154)
34 cd03443 PaaI_thioesterase PaaI 96.0 0.088 1.9E-06 38.4 9.2 55 93-153 58-112 (113)
35 cd01288 FabZ FabZ is a 17kD be 95.9 0.076 1.7E-06 40.1 8.8 56 92-153 74-129 (131)
36 cd03442 BFIT_BACH Brown fat-in 95.9 0.1 2.2E-06 38.6 9.2 59 93-156 52-114 (123)
37 PF03061 4HBT: Thioesterase su 95.8 0.07 1.5E-06 36.3 7.6 51 91-146 29-79 (79)
38 PF07977 FabA: FabA-like domai 95.8 0.06 1.3E-06 41.7 7.9 56 91-149 82-138 (138)
39 TIGR01750 fabZ beta-hydroxyacy 95.6 0.098 2.1E-06 40.4 8.5 57 91-153 83-139 (140)
40 PRK13693 (3R)-hydroxyacyl-ACP 95.4 0.0059 1.3E-07 48.0 0.7 14 204-217 32-45 (142)
41 cd01287 FabA FabA, beta-hydrox 95.3 0.16 3.5E-06 40.4 8.9 61 91-153 84-145 (150)
42 TIGR02799 thio_ybgC tol-pal sy 95.3 0.21 4.5E-06 37.4 9.2 60 92-157 52-111 (126)
43 cd00493 FabA_FabZ FabA/Z, beta 95.2 0.2 4.3E-06 37.7 8.8 53 91-149 74-126 (131)
44 PF13279 4HBT_2: Thioesterase- 95.2 0.36 7.7E-06 35.9 10.0 63 92-158 43-107 (121)
45 PLN02864 enoyl-CoA hydratase 95.0 0.24 5.2E-06 44.0 9.9 117 14-152 184-303 (310)
46 PRK10254 thioesterase; Provisi 94.8 0.48 1E-05 37.1 10.0 60 91-156 78-137 (137)
47 COG2050 PaaI HGG motif-contain 94.6 0.34 7.4E-06 37.6 8.9 58 94-156 81-138 (141)
48 COG0824 FcbC Predicted thioest 94.5 0.44 9.4E-06 37.1 9.3 60 93-158 57-116 (137)
49 PRK10293 acyl-CoA esterase; Pr 94.3 0.55 1.2E-05 36.6 9.3 57 92-154 79-135 (136)
50 TIGR00051 acyl-CoA thioester h 94.2 0.6 1.3E-05 34.1 9.2 54 94-152 50-103 (117)
51 cd00556 Thioesterase_II Thioes 93.7 0.46 9.9E-06 33.8 7.4 57 92-153 42-98 (99)
52 PRK13188 bifunctional UDP-3-O- 93.7 0.56 1.2E-05 44.0 9.7 60 91-155 401-460 (464)
53 PLN02322 acyl-CoA thioesterase 93.1 1.1 2.5E-05 35.8 9.4 60 92-155 70-134 (154)
54 PF14539 DUF4442: Domain of un 92.9 0.43 9.3E-06 36.8 6.5 58 93-154 75-132 (132)
55 PRK07531 bifunctional 3-hydrox 91.7 1.3 2.7E-05 41.9 9.4 58 94-156 397-454 (495)
56 cd03450 NodN NodN (nodulation 90.9 0.08 1.7E-06 42.0 0.4 21 197-217 27-47 (149)
57 PLN02370 acyl-ACP thioesterase 90.3 2.6 5.7E-05 39.1 9.8 61 92-156 196-256 (419)
58 PRK05174 3-hydroxydecanoyl-(ac 90.1 3.6 7.7E-05 33.4 9.5 56 93-151 105-161 (172)
59 cd01289 FabA_like Domain of un 90.1 3.4 7.3E-05 32.0 9.0 59 91-154 77-136 (138)
60 TIGR01749 fabA beta-hydroxyacy 88.8 3.2 7E-05 33.6 8.3 55 93-150 102-157 (169)
61 TIGR02447 yiiD_Cterm thioester 87.6 1.9 4.1E-05 33.5 6.0 60 91-154 68-136 (138)
62 PRK10694 acyl-CoA esterase; Pr 86.0 5.4 0.00012 30.9 7.7 56 98-157 60-122 (133)
63 TIGR00189 tesB acyl-CoA thioes 85.9 4 8.6E-05 34.9 7.7 60 91-155 212-271 (271)
64 PLN02647 acyl-CoA thioesterase 84.4 7.7 0.00017 36.2 9.2 61 98-158 339-404 (437)
65 COG1607 Acyl-CoA hydrolase [Li 83.7 8 0.00017 31.1 7.9 59 98-158 62-122 (157)
66 COG0764 FabA 3-hydroxymyristoy 83.6 12 0.00027 29.6 8.9 94 52-154 47-143 (147)
67 TIGR02278 PaaN-DH phenylacetic 82.0 0.6 1.3E-05 45.7 1.0 24 194-217 540-564 (663)
68 PRK11563 bifunctional aldehyde 81.5 0.64 1.4E-05 45.6 1.0 24 194-217 552-576 (675)
69 PF01643 Acyl-ACP_TE: Acyl-ACP 80.8 16 0.00035 31.3 9.4 60 93-156 61-120 (261)
70 cd03444 Thioesterase_II_repeat 79.7 14 0.00031 27.0 7.6 60 89-153 44-103 (104)
71 KOG3328 HGG motif-containing t 79.7 24 0.00052 28.0 9.1 65 91-159 80-144 (148)
72 PRK10526 acyl-CoA thioesterase 78.4 13 0.00027 32.5 8.1 61 91-156 224-284 (286)
73 COG1946 TesB Acyl-CoA thioeste 76.7 16 0.00034 32.3 8.0 65 88-157 221-285 (289)
74 PF09500 YiiD_Cterm: Putative 75.8 25 0.00054 27.8 8.3 64 86-154 70-142 (144)
75 PF13622 4HBT_3: Thioesterase- 69.5 49 0.0011 27.6 9.3 57 93-154 198-255 (255)
76 PF14765 PS-DH: Polyketide syn 65.6 64 0.0014 27.3 9.4 63 88-155 225-288 (295)
77 PF10862 FcoT: FcoT-like thioe 57.0 73 0.0016 25.5 7.4 53 90-143 93-148 (157)
78 PLN02647 acyl-CoA thioesterase 56.7 65 0.0014 30.2 8.2 57 98-157 150-211 (437)
79 PF13622 4HBT_3: Thioesterase- 51.4 97 0.0021 25.8 8.0 55 97-158 38-92 (255)
80 PF02551 Acyl_CoA_thio: Acyl-C 43.7 1.3E+02 0.0027 23.5 6.7 57 87-150 70-128 (131)
81 PF01643 Acyl-ACP_TE: Acyl-ACP 42.3 1.5E+02 0.0032 25.3 7.8 51 97-151 208-258 (261)
82 PLN02868 acyl-CoA thioesterase 42.2 79 0.0017 28.9 6.4 55 92-151 356-410 (413)
83 TIGR02722 lp_ uncharacterized 36.7 1.7E+02 0.0038 23.8 7.0 43 109-151 141-186 (189)
84 PF13036 DUF3897: Protein of u 33.4 1.7E+02 0.0037 23.3 6.4 41 109-149 134-177 (180)
85 COG5496 Predicted thioesterase 28.3 2.9E+02 0.0062 21.5 8.9 89 60-156 27-115 (130)
86 cd04316 ND_PkAspRS_like_N ND_P 28.2 1.3E+02 0.0028 21.9 4.5 26 107-132 10-35 (108)
87 PF03756 AfsA: A-factor biosyn 23.0 3.2E+02 0.007 20.3 9.3 58 93-152 72-130 (132)
88 cd04322 LysRS_N LysRS_N: N-ter 20.9 1.7E+02 0.0036 21.3 3.9 22 111-132 1-22 (108)
89 PF09859 Oxygenase-NA: Oxygena 20.7 44 0.00094 27.2 0.7 16 200-215 64-80 (173)
No 1
>PLN02864 enoyl-CoA hydratase
Probab=100.00 E-value=2.8e-54 Score=380.34 Aligned_cols=217 Identities=67% Similarity=1.016 Sum_probs=187.5
Q ss_pred CCCcCCCChhhhcCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCC
Q 027671 1 MAKSSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGA 80 (220)
Q Consensus 1 ~~~~m~id~~~~ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~ 80 (220)
|-..-+||+++++|+++++.++.|++||+|+||+|||+++.||++.++|+|+||+.++++|+|||||++++++.......
T Consensus 2 ~~~~~~~~~~~~~g~~~p~~~~~~~~~d~~lyAl~vG~~~~~~~d~~~l~~~ye~~g~~~~~a~PTf~~vl~~~~~~~~~ 81 (310)
T PLN02864 2 MPPISPFDPDLVLAHKFPEVTYSYTERDVALYALGVGACGRDAVDEDELKYVYHRDGQQFIKVLPTFASLFNLGSLDGFG 81 (310)
T ss_pred CCCCCCCCHHHHhCCcCCCeeEEECHHHHHHHHHhcCCCCCCCCChHHhhhhhccccCCCcccCCceeeeccccCccccc
Confidence 44556899999999999999999999999999999998667888889999999854558999999999999876532122
Q ss_pred CCCCCCCCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEeccCCC
Q 027671 81 IDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGF 160 (220)
Q Consensus 81 ~~~p~~~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~gg~ 160 (220)
+.+|+++||+.++|||||+|++||||+++++|+++++|++++|||||+++++++++++.++||+||++++|+|+||.|||
T Consensus 82 ~~~p~~~~d~~~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~gg~ 161 (310)
T PLN02864 82 LDLPGLNYDPSLLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGAGGF 161 (310)
T ss_pred ccCCCCCCChhheeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCCCCC
Confidence 46788999999999999999999999999999999999999999999999999999886689999999999999999999
Q ss_pred CCCCCCCCCCccCCCCcCCCCCCCCCCCEEEEecCCchhHHHHhhcCCCcccCcccc
Q 027671 161 SNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQACSIKFHYCWNSKFFIFE 217 (220)
Q Consensus 161 gg~~~~~~~~~~~~~~~~~~~~P~r~Pd~~~~~~t~~~qa~lYRlSGD~NPiH~~~~ 217 (220)
||++.+....+.+.......+.|+++||++.+..+.++|+++||||||+||||++.|
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~p~~~pd~~~~~~t~~~~~~~a~lSGD~NPiH~d~~ 218 (310)
T PLN02864 162 SNSSQPFSYSNYPTNQVSAVKIPKSQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPM 218 (310)
T ss_pred CCCCCCccccccccccccccCCCCCCCCeEEeeccChhHHHHHHhhCCCCcccCCHH
Confidence 987765211111111223455788999999999999999999999999999999976
No 2
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-38 Score=261.11 Aligned_cols=178 Identities=33% Similarity=0.519 Sum_probs=158.0
Q ss_pred EEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCceeeecEEEE
Q 027671 22 FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQQYME 101 (220)
Q Consensus 22 ~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~lvHgeq~i~ 101 (220)
+.|+.||+|.||+++|+ ...|++|+|||+ +||++.|||.+.+ +.. .-.|..+.-.+|..+++||||+|+
T Consensus 6 f~~~tkd~I~y~lg~g~------t~kd~~~~yeN~--~dF~~lPt~~v~p-~~~--~~~~~~~~d~~~~~~~lhgeqy~e 74 (272)
T KOG1206|consen 6 FKYTTKDCILYALGLGA------TSKDLKYTYEND--PDFQVLPTFAVIP-ATA--TLLMDNLVDNFDYAMLLHGEQYFE 74 (272)
T ss_pred ccccHHHHHHHHhcccc------chhHHHHHhccC--ccceeccceeeeh-hHH--HHHhhccchhHHHHHHHHHHHHHH
Confidence 78999999999999998 245899999999 9999999999998 332 122444555799999999999999
Q ss_pred EeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEeccCCCCCCCCCCCCCccCCCCcCCCC
Q 027671 102 LYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVK 181 (220)
Q Consensus 102 ~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~gg~gg~~~~~~~~~~~~~~~~~~~ 181 (220)
...+++.++++.+.+++.++.|||+|++++.-.+.+| ++|.+++.+.++.|+||.+-|++++.+. .......
T Consensus 75 ~~~~l~~~g~l~t~~~~~~v~dkg~~a~v~~~~et~d-~~~k~i~~~~~stf~~g~~~~~~k~~~~-------~~~~av~ 146 (272)
T KOG1206|consen 75 LCTTLPSNGTLKTLAKVLDVLDKGSGALVVGNFETYD-ETGKLIAYNQGSTFIRGAGVFGGKRDGK-------RAKKAVQ 146 (272)
T ss_pred HHccccccchhhhcceeEEeccCcceeEEEeeeeeec-ccccchhhhcCceeEecccccCccccch-------hheeecc
Confidence 9999999999999999999999999999999999999 6999999999999999999999986542 2234455
Q ss_pred CCCCCCCEEEEecCCchhHHHHhhcCCCcccCccccc
Q 027671 182 IPKSQPFAVFEDYTQPSQACSIKFHYCWNSKFFIFEL 218 (220)
Q Consensus 182 ~P~r~Pd~~~~~~t~~~qa~lYRlSGD~NPiH~~~~~ 218 (220)
.|.|.||++++..++.+||++||||||+||||+++|.
T Consensus 147 ~p~r~pd~~v~~~ts~DqaAlyrlsgD~NPLHiDPe~ 183 (272)
T KOG1206|consen 147 VPHRDPDAVVERFTSEDQAALYRLSGDHNPLHIDPES 183 (272)
T ss_pred CCCcCcchheeecchhhHHHHHHhcCCCCccccCHHH
Confidence 8999999999999999999999999999999999985
No 3
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.93 E-value=8.3e-26 Score=175.27 Aligned_cols=124 Identities=28% Similarity=0.522 Sum_probs=95.2
Q ss_pred hcCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceeccc----CcCCccccceehhhhccCcCCCCCCCCCCCC
Q 027671 12 LLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHEN----GQQFIQVLPTFSALFSFELEPSGAIDLPGLQ 87 (220)
Q Consensus 12 ~ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~----~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~ 87 (220)
.||+++++..+.++++++++||++||+ .+|+ |.++.. ++++++|||||++++++... .+ .+.++
T Consensus 2 ~iG~~~~~~~~~v~~~~i~~ya~avg~--~~p~------~~d~~~a~~~~~~~~~apPt~~~~~~~~~~---~~-~~~~~ 69 (132)
T PF13452_consen 2 WIGREFEPVTYTVTRRDIRRYALAVGD--PNPL------YLDEEYARAAGHGGLIAPPTFAVVLAWPAP---AM-FPDLG 69 (132)
T ss_dssp GTT-B-E-EEEEE-HHHHHHHHHHTT---CTTH------HHHCTSS--TTSTT-B--GGGHHHHHHHCC---GG-CGCCS
T ss_pred CCccEeCCeeEEECHHHHHHHHHHhCc--CCcc------ccCHhHhhccCCCCcccCHHHHhhhhcccc---ee-eecCC
Confidence 689999999999999999999999998 6663 444422 45899999999999998641 11 15668
Q ss_pred CCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEc---CCceEEEEEEEEEECCCCcEEEEE
Q 027671 88 HDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDK---GKAAILEIETKSYNAESGELLCMN 148 (220)
Q Consensus 88 ~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dk---gkG~~v~~~~~~~~~~~Ge~V~~~ 148 (220)
+|+.++||++|+|+|||||++||+|+++++|.++++| |+|.+|+++++++| ++|++|+|+
T Consensus 70 ~~~~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~-~~Ge~v~t~ 132 (132)
T PF13452_consen 70 FDLTRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD-QDGELVATQ 132 (132)
T ss_dssp S-GGGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE-
T ss_pred CChhhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC-CCCCEEEeC
Confidence 9999999999999999999999999999999999999 46899999999998 599999985
No 4
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.89 E-value=5.6e-22 Score=160.57 Aligned_cols=147 Identities=13% Similarity=0.102 Sum_probs=118.4
Q ss_pred CCCChhhhcCCcCCCee-EEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCC
Q 027671 5 SGINPELLLSQKLPEKT-FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDL 83 (220)
Q Consensus 5 m~id~~~~ig~~~~~~~-~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~ 83 (220)
|+||++ ++|++|++.. +++++.|++.||.++|+ .||++- |..|.- ..++.+.+|+|||+.++...... ..+..
T Consensus 1 ~~~~~~-~~g~~~~~~~~~~Vt~~~I~~FA~~~GD--~nPlH~-D~eyA~-~s~fg~~IApgt~~~~~~~~~~~-~~~~~ 74 (166)
T PRK13691 1 MALKTD-IRGMVWRYPDYFVVGREQIRQFARAVKC--DHPAFF-SEDAAA-ELGYDALVAPLTFVTIFAKYVQL-DFFRH 74 (166)
T ss_pred CCCChh-hCccCcCCCCCeEECHHHHHHHHHHHCC--CCCccc-CHHHHH-hCCCCCcccCHHHHHHHHHHhcc-ccccc
Confidence 889997 9999999886 59999999999999998 899742 222221 12678999999998766543211 11222
Q ss_pred CCCCCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEeccC
Q 027671 84 PGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAG 158 (220)
Q Consensus 84 p~~~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~g 158 (220)
..++++..+++|++|+++|+||+.+||+|+++.+|.++.+++++.++++++++.| ++||+|++..++++.|..+
T Consensus 75 ~~~g~~~~~~v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-Q~Ge~V~~~~~~~~~~~~~ 148 (166)
T PRK13691 75 VDVGMETMQIVQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-DDGELVMEAYTTLMGQQGD 148 (166)
T ss_pred cccCCCcceeeeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-CCCCEEEEEEEEEEEecCC
Confidence 3457788889999999999999999999999999999987665568999999998 6999999999999998744
No 5
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.83 E-value=2e-19 Score=144.72 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=119.2
Q ss_pred CCCChhhhcCCcCCCe-eEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCC
Q 027671 5 SGINPELLLSQKLPEK-TFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDL 83 (220)
Q Consensus 5 m~id~~~~ig~~~~~~-~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~ 83 (220)
|++|.+ .+|.++... .+++++.|++.||.++|+ .+|+.- |-.|.- ..++.+.+|+|+|..++++.... ..+..
T Consensus 1 ~~~~~~-~vG~~~~~~~~~tvt~~dI~~FA~~~GD--~nPlh~-D~e~A~-~~~fg~~iA~~~~~~~~gl~~~~-~~~~~ 74 (159)
T PRK13692 1 MALSAD-IVGMHYRYPDHYEVEREKIREYAVAVQN--DDAAYF-EEDAAA-ELGYKGLLAPLTFICVFGYKAQS-AFFKH 74 (159)
T ss_pred CCCChh-HceeEcCCCCceEeCHHHHHHHHHHHCC--CCCCcc-CHHHHH-hcCCCCcccChHHHHHhhhhhhh-hhhhc
Confidence 789986 999999986 789999999999999998 888642 111221 12568899999998877765421 11334
Q ss_pred CCCCCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEecc
Q 027671 84 PGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 157 (220)
Q Consensus 84 p~~~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~ 157 (220)
..++++..+.||++|+++|++|+.+||+|+++.+|.++++++...+++++++++| ++|++|++.++++++|+.
T Consensus 75 ~~l~~~~~~~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-q~Ge~V~~~~~~~~~r~~ 147 (159)
T PRK13692 75 ANIAVADAQIVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-EEGDVVQETYTTLAGRAG 147 (159)
T ss_pred ccCCCCccceEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-CCCCEEEEEEEEEEEecC
Confidence 5667888899999999999999999999999999999887654578999999998 599999999999999974
No 6
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=99.48 E-value=4.6e-13 Score=105.51 Aligned_cols=134 Identities=17% Similarity=0.115 Sum_probs=102.5
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|.+++....++++.|++.||.+.|+ .||++-++ .|.- ..++.+.+|+++|...+...... ...++ ...
T Consensus 7 vG~~~~~~~~tvt~~~i~~Fa~~tgD--~nPiH~D~-e~A~-~~~fg~~ia~G~l~~s~~~~l~~---~~~~~----~~~ 75 (142)
T cd03452 7 PGDSLLTHRRTVTEADIVNFACLTGD--HFYAHMDE-IAAK-ASFFGKRVAHGYFVLSAAAGLFV---DPAPG----PVL 75 (142)
T ss_pred CCCEEeeCCEEEcHHHHHHHHHhhCC--CCccccCH-HHHh-hCCCCCeeecHHHHHHHHhhhCc---cCCcc----cEE
Confidence 68888766789999999999999998 89974222 1221 12568899999998888765411 11111 111
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCC--ceEEEEEEEEEECCCCcEEEEEEEEEEEeccC
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGK--AAILEIETKSYNAESGELLCMNRMTAFLRGAG 158 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgk--G~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~g 158 (220)
.-||.|.++|++|+.+||+|+++.+|.+++++.+ ..++.+++++.| ++|+.|++.+.+++++..|
T Consensus 76 ~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~~~~~ 142 (142)
T cd03452 76 ANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN-QNGELVASYDILTLVAKKG 142 (142)
T ss_pred EEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe-cCCCEEEEEEehHeeEecC
Confidence 2389999999999999999999999999997643 468888999988 5899999999999887654
No 7
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=99.48 E-value=4.2e-13 Score=106.88 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=102.4
Q ss_pred cCCCChhhhcCCcCCCee-EEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCC
Q 027671 4 SSGINPELLLSQKLPEKT-FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAID 82 (220)
Q Consensus 4 ~m~id~~~~ig~~~~~~~-~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~ 82 (220)
+|. |..+++|.+++... .++++.|+++||.++|+ .||++-++- |.-+ .++++.+|+++|...+.......+ +.
T Consensus 4 ~~~-~~~~~vG~~~~~~~~~~vt~~di~~FA~~sgD--~nPiH~D~e-~A~~-~gfg~~Ia~G~~t~sl~~~l~~~~-~~ 77 (149)
T cd03450 4 SLA-DLAALVGQELGVSDWVTVDQERIDQFADATGD--HQWIHVDPE-RAAA-EPFGGTIAHGFLTLSLLPALTPQL-FR 77 (149)
T ss_pred CHH-HHHHhCCCCcCCCCCEEECHHHHHHHHHhhCC--CCccccCHH-HHhh-CCCCCeEECHHHHHHHHHHHHHhc-cc
Confidence 344 56679999998765 68999999999999998 899642111 2111 256899999999887765431111 11
Q ss_pred CCCCCCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCc-eEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 83 LPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKA-AILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 83 ~p~~~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG-~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
.++. ..+..+|+|+++|++|+.+||+|+++.+|.++.++.++ +.++++.++.-.....++|..++.++
T Consensus 78 ~~~~---~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 146 (149)
T cd03450 78 VEGV---KMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEWISR 146 (149)
T ss_pred CCCc---eEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEEEEe
Confidence 1111 11356799999999999999999999999999999875 88888888766445667887766654
No 8
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.44 E-value=2.2e-12 Score=100.53 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=97.8
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|..++....++++.|++.||.+.|+ .||+.-++- |.- ..++.+.+++++|...+...... ..+... .-..
T Consensus 7 vG~~~~~~~~tvt~~~i~~fa~~~gD--~np~H~D~~-~A~-~~~~~~~ia~G~~~~a~~~~~~~----~~~~~~-~~~~ 77 (140)
T cd03446 7 IGQVFESVGRTVTEADVVMFAGLSGD--WNPIHTDAE-YAK-KTRFGERIAHGLLTLSIATGLLQ----RLGVFE-RTVV 77 (140)
T ss_pred CCCEeccCCEEECHHHHHHHHHhhCC--CcccccCHH-HHc-cCCCCCceeccccHHHHHhhHhh----hccccc-ceee
Confidence 68888767789999999999999998 889742222 211 12567889999888766544311 111111 1123
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCC--ceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGK--AAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgk--G~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
..+|.|+++|++|+.+||+|+++.+|.++.++.+ ..+++++++++| ++|++|++.+.+++
T Consensus 78 ~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~l 139 (140)
T cd03446 78 AFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN-QRGEVVQSGEMSLL 139 (140)
T ss_pred EEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc-CCCCEEEEEEEeee
Confidence 4689999999999999999999999999987743 367899999988 59999999988876
No 9
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.42 E-value=1.7e-12 Score=101.43 Aligned_cols=132 Identities=15% Similarity=0.175 Sum_probs=96.0
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|..++...+++++.|++.||.+ |+ .||++-+ ..|- .+.++.+.+|++++...+...... . ..++.+...
T Consensus 6 vG~~~~~~~~~vt~~~v~~Fa~~-~D--~npih~D-~e~A-~~~~~~~~ia~g~~~~~~~~~~~~-~----~~~~~~~~~ 75 (140)
T cd03454 6 IGQRFTSGSYTVTEEEIIAFARE-FD--PQPFHLD-EEAA-KESLFGGLAASGWHTAAITMRLLV-D----AGLSGSASG 75 (140)
T ss_pred CccEEEeCCEEEcHHHHHHHHHc-cC--CCccCcC-HHHH-hcCCCCCeeechHHHHHHHHHhhh-h----hccccceEE
Confidence 68888776789999999999997 87 8897421 1121 112567899998554444432210 0 001112245
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcC---CceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKG---KAAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkg---kG~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
..|+.|+++|++|+.+||+|+++.+|.+++++. +..+++++++++| ++|++|++.+.+++++
T Consensus 76 ~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~~~~ 140 (140)
T cd03454 76 GSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-QRGEVVLTFEATVLVR 140 (140)
T ss_pred EEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc-CCCCEEEEEEehheeC
Confidence 678899999999999999999999999999752 2257899999998 5999999999988864
No 10
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=99.38 E-value=5.2e-12 Score=99.11 Aligned_cols=134 Identities=17% Similarity=0.180 Sum_probs=100.3
Q ss_pred hcCCcCCC-eeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCC
Q 027671 12 LLSQKLPE-KTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDP 90 (220)
Q Consensus 12 ~ig~~~~~-~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~ 90 (220)
-+|.+++. ...++++.|+++||.++|+ .||++-++- |. .++++++.+|+++|...+...... +.+.- -
T Consensus 8 ~vG~~~~~~~~~tvt~~~i~~fa~~~gd--~~piH~D~~-~a-~~~~~~~~ia~G~l~~~~~~~~~~------~~~~~-~ 76 (146)
T cd03451 8 TVGQVFEHAPGRTVTEADNVLFTLLTMN--TAPLHFDAA-YA-AKTEFGRRLVNSLFTLSLALGLSV------NDTSL-T 76 (146)
T ss_pred CCccEEecCCCeEEcHHHHHHHHHhhCC--CCccccCHH-HH-hhCCCCCccccHHhHHHHHhhhee------hhccc-c
Confidence 47889874 4689999999999999998 899743222 21 123568999999998877654311 11110 1
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEc-CC--ceEEEEEEEEEECCCCcEEEEEEEEEEEecc
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDK-GK--AAILEIETKSYNAESGELLCMNRMTAFLRGA 157 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dk-gk--G~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~ 157 (220)
.....+-++++|++|+.+||+|+++.+|.+++++ ++ ..++.+++++++ ++|++|++.+.+++++..
T Consensus 77 ~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 77 AVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-QDGEPVLSFERTALVPKR 145 (146)
T ss_pred ceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC-CCCCEEEEEEehhEEEcC
Confidence 2234566799999999999999999999999975 22 368889999887 589999999999998753
No 11
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=99.28 E-value=6.9e-11 Score=90.18 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=94.3
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|..+ ....++++.++++||..+|+ .||+.-++- |.- ..++++..++++|...+...... . .++-.+
T Consensus 3 ~G~~~-~~~~tv~~~~~~~fa~~~gd--~npiH~D~~-~A~-~~g~~~~i~~g~~~~~~~~~~~~---~-----~~~g~~ 69 (128)
T cd03449 3 VGDSA-SLTRTITEEDVELFAELSGD--FNPIHLDEE-YAK-KTRFGGRIAHGMLTASLISAVLG---T-----LLPGPG 69 (128)
T ss_pred CCCEE-EEEEEEcHHHHHHHHHHhCC--CCCccCCHH-HHh-hCCCCCceecHHHHHHHHHHHHh---c-----cCCCce
Confidence 57777 56779999999999999998 888742222 211 12557899999988876543311 0 112246
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
.++++++++|++|+.+||+|+++++|.++.++ ..+++++.++++ ++|++|++.+.++++
T Consensus 70 ~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~--~~~v~~~~~~~~-~~g~~v~~g~~~~~~ 128 (128)
T cd03449 70 TIYLSQSLRFLRPVFIGDTVTATVTVTEKRED--KKRVTLETVCTN-QNGEVVIEGEAVVLA 128 (128)
T ss_pred EEEEEEEEEECCCccCCCEEEEEEEEEEEecC--CCEEEEEEEEEe-CCCCEEEEEEEEEeC
Confidence 78999999999999999999999999998754 236678888888 489999999988763
No 12
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.27 E-value=5e-11 Score=91.92 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=94.1
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|..+++..+++++.|+++||..+|+ .||+.-++- |.-+ .|+++..++++|...+.......+ ++ +...
T Consensus 1 vG~~~~~~~~~vt~~~i~~fa~~sgD--~npiH~D~~-~A~~-~g~~~~i~~G~~~~~~~~~~~~~~------~~-~~~~ 69 (127)
T cd03453 1 VGDELPPLTPPVSRADLVRYAGASGD--FNPIHYDED-FAKK-VGLPGVIAHGMLTMGLLGRLVTDW------VG-DPGR 69 (127)
T ss_pred CCccCCceeeecCHHHHHHHHHhhcC--CCccccCHH-HHHH-cCCCCcEecHHHHHHHHHHHHHHH------cC-Cccc
Confidence 58889988999999999999999998 889642221 2211 256889999988777664331111 11 2344
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
++ ++.++|++|+.+||+|+++.+|.++++++...+++++++++| ++|+.|++.+.++
T Consensus 70 i~--~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v~~g~a~v 126 (127)
T cd03453 70 VV--SFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKKVLGRAIV 126 (127)
T ss_pred eE--EEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEEEEEEEEE
Confidence 44 567999999999999999999999987754357888999998 5899998876553
No 13
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=99.20 E-value=3.1e-10 Score=86.20 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=92.0
Q ss_pred CCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCceeeec
Q 027671 18 PEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQ 97 (220)
Q Consensus 18 ~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~lvHge 97 (220)
+.....+++.++++||.++|+ .||++-++- |.- ..++++.+++++|...+.......+ .+. ....++++
T Consensus 4 ~~~~~~~~~~~~~~fa~~~gd--~npiH~d~~-~A~-~~~~~~~i~~g~~~~~~~~~~~~~~---~~~----~~~~~~~~ 72 (127)
T cd03441 4 DSSGRTVTEADIALFARLSGD--PNPIHVDPE-YAK-AAGFGGRIAHGMLTLSLASGLLVQW---LPG----TDGANLGS 72 (127)
T ss_pred eEcceEcCHHHHHHHHHHhCC--CCccccCHH-HHH-hCCCCCceechHHHHHHHHhhhhhh---ccC----cccceeEE
Confidence 344689999999999999998 888632111 111 1156889999999988876652211 111 25679999
Q ss_pred EEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEE
Q 027671 98 QYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 151 (220)
Q Consensus 98 q~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st 151 (220)
+.++|++|+.+||+|+++.+|.++.++.+..++++++++++ ++|++++..+.+
T Consensus 73 ~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~~ 125 (127)
T cd03441 73 QSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN-QGGEVVLSGEAT 125 (127)
T ss_pred eEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe-CCCCEEEEEEEE
Confidence 99999999999999999999999998764456788888888 489998886554
No 14
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=99.11 E-value=6.5e-10 Score=85.14 Aligned_cols=122 Identities=12% Similarity=0.072 Sum_probs=91.1
Q ss_pred CCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCce
Q 027671 14 SQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLL 93 (220)
Q Consensus 14 g~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~l 93 (220)
|..+++.+.++++.|+++||.+.|+ .||+.- |..|--+ .|+++.+++.+|...+.......+ ++ .+.
T Consensus 1 g~~~~~~~~~vt~~~i~~fa~~s~D--~~piH~-D~~~A~~-~g~~~~ia~G~~~~~~~~~~~~~~------~~---~~~ 67 (123)
T cd03455 1 GDELPRLSIPPDPTLLFRYSAATRD--FHRIHH-DRDYARA-VGYPDLYVNGPTLAGLVIRYVTDW------AG---PDA 67 (123)
T ss_pred CCcCCcEEecCCHHHHHHHHhhcCC--CCcccC-CHHHHHh-cCCCceEEEHHHHHHHHHHHHHHc------cC---Ccc
Confidence 4567888899999999999999998 888632 2222211 166889999988887765432111 11 123
Q ss_pred eeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 94 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 94 vHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
...+++++|++|+.+||+|+++.+|.+..+ ++ ++.++.+++| ++|++|++.+.++
T Consensus 68 ~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~-~~--~v~~~~~~~n-q~G~~v~~g~a~v 122 (123)
T cd03455 68 RVKSFAFRLGAPLYAGDTLRFGGRVTAKRD-DE--VVTVELWARN-SEGDHVMAGTATV 122 (123)
T ss_pred eEEEEEEEeeccccCCCEEEEEEEEEeecc-Cc--EEEEEEEEEc-CCCCEEEeEEEEE
Confidence 446789999999999999999999998743 23 8999999998 5899999887764
No 15
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.03 E-value=2.5e-09 Score=99.63 Aligned_cols=129 Identities=14% Similarity=0.195 Sum_probs=97.2
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|.++. ...++|+.|++.||...|+ .||++-++- |-- ..++++.+|+++|...+..... . ...+ -.+
T Consensus 16 vG~~~~-~~rtvT~~di~~FA~lsGD--~nPiH~D~e-~Ak-~sgfg~~IahG~l~~s~~~~l~--~-~~~~-----g~~ 82 (466)
T PRK08190 16 IGDSAS-LVRTLTPDDIELFAAMSGD--VNPAHLDAA-YAA-SDGFHHVVAHGMWGGALISAVL--G-TRLP-----GPG 82 (466)
T ss_pred CCCEEe-eeEEecHHHHHHHHHHhCC--CCCCCcCHH-HHH-hCCCCCceeCHHHHHHHHHHHH--h-hhCC-----Ccc
Confidence 688874 5679999999999999998 899742222 111 1256889999988877654321 1 1112 235
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEecc
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 157 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~ 157 (220)
.+|++|+++|++|+.+||+|+++.+|.+.++ ++ .+++++++++| ++|++|++.+.+++++..
T Consensus 83 ~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~-~~-~~v~~~~~~~n-q~G~~V~~g~~~~l~~~~ 144 (466)
T PRK08190 83 TIYLGQSLRFRRPVRIGDTLTVTVTVREKDP-EK-RIVVLDCRCTN-QDGEVVITGTAEVIAPTE 144 (466)
T ss_pred eEEEEEEEEEeCCcCCCCEEEEEEEEEEEEC-CC-CEEEEEEEEEe-CCCCEEEEEEEEeecccc
Confidence 7899999999999999999999999998653 33 37778888888 599999999999988754
No 16
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=98.98 E-value=2.9e-09 Score=103.09 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=98.1
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|.+++....++++.|+++||...|+ .||++-+ -.|..+ .++++.+|+++|...+...... .+..+- ..
T Consensus 530 VG~~~~~~~~tvt~~dI~~FA~~sgD--~nPiH~D-~e~A~~-s~fg~~Ia~G~l~~sl~~~l~~-----~~~~~~--~~ 598 (663)
T TIGR02278 530 IGDSLTTHRRTVTEADIALFAALSGD--HFYAHMD-EIAARE-SFFGKRVAHGYFVLSAAAGLFV-----DPAPGP--VL 598 (663)
T ss_pred CCCCcCCCCeEEcHHHHHHHHHhhCC--CCcccCC-HHHHhh-CCCCCceeCHHHHHHHHHHHhh-----ccCccc--hh
Confidence 79998777789999999999999998 8997422 222221 2568899999988776644311 111111 11
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCC-c-eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGK-A-AILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgk-G-~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
.-||.|+++|++|+.+||+|+++.+|.+++++.+ + .++++++++.+ ++|++|++.+.+++++
T Consensus 599 ~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n-q~G~~Vl~~~~~~lv~ 662 (663)
T TIGR02278 599 ANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN-QNGEPVATYDVLTLVA 662 (663)
T ss_pred hhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc-CCCCEEEEEEEHHhcc
Confidence 2289999999999999999999999999998654 2 47888889888 5899999998877653
No 17
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=2e-08 Score=97.44 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=98.0
Q ss_pred cCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCc
Q 027671 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRL 92 (220)
Q Consensus 13 ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~ 92 (220)
+|..++....++++.|++.||...|+ .||++-++ .|..+ .++.+.+|+++|...+.+.....+ .++. ..
T Consensus 542 vG~~~~~~~~tvt~~di~~FA~lsgD--~nPiH~D~-e~A~~-~~fg~~ia~G~l~~sl~~~l~~~~---~~~~----~~ 610 (675)
T PRK11563 542 IGDSLLTARRTVTEADIVNFACLSGD--TFYAHMDE-IAAAA-NFFGGRVAHGYFVLSAAAGLFVDP---APGP----VL 610 (675)
T ss_pred CCCEeccCCEEEcHHHHHHHHHhhCC--CCccccCH-HHHhh-CCCCCceeCHHHHHHHHHHHhhcc---Cccc----hh
Confidence 79998777789999999999999998 89974222 22211 256889999999877765541101 1110 11
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCC--ceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGK--AAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgk--G~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
.-.|-|.++|++|+.+||+|+++.+|.+++++.+ ..++++++++.+ ++|++|++.+..+++|
T Consensus 611 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 611 ANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QDGELVATYDILTLVA 674 (675)
T ss_pred hhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CCCCEEEEEEEHHhcc
Confidence 1235678999999999999999999999998743 358899999988 5899999999887765
No 18
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=98.49 E-value=1.4e-06 Score=69.95 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=91.4
Q ss_pred hcCCcCCCee-EEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCC
Q 027671 12 LLSQKLPEKT-FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDP 90 (220)
Q Consensus 12 ~ig~~~~~~~-~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~ 90 (220)
.+|+.++... ..++..|++.||...|+ .+|+.-++-.--.+ .+++..+|-..+-..+....... .+..+-
T Consensus 21 ~vG~~~~~~~~~~~t~~d~~~fa~~tgD--~qpiH~D~e~A~~~-~~fg~~iahG~~t~a~~~~~~~~------~~~~~~ 91 (159)
T COG2030 21 EVGQVFPHSPWRTVTEADIVLFAAVTGD--PNPIHLDPEAAKKT-SGFGGPIAHGMLTLALAMGLVVA------ALGDPS 91 (159)
T ss_pred cCCcEEecCCceEecHHHHHHHHHhcCC--CCceecCHHHHhcc-CCCCCEehhHHHHHHHHHHHHHH------hccCcc
Confidence 3787766554 69999999999999998 88863222111111 11234444444333333322110 011111
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
...-.|.+.++|++|+.+||+|+.++.+.+.+++++.-++.++.++.+ +.|++|.....+.+++
T Consensus 92 ~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~-~~g~~v~~~~~~~~~~ 155 (159)
T COG2030 92 VGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVN-QEGELVLTLEATVLVL 155 (159)
T ss_pred eeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEc-cCCcEEEEEEEeEeEe
Confidence 456789999999999999999999999999999987667777777777 5899999998887765
No 19
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.44 E-value=4.3e-06 Score=64.59 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=79.8
Q ss_pred eeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCceeeecEE
Q 027671 20 KTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQQY 99 (220)
Q Consensus 20 ~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~lvHgeq~ 99 (220)
.....+..|+..||...|+ .||+.-+ ..|.-+ .++++.+|+..+...+.......+ .+ +.+...+++ ++
T Consensus 6 ~~~~~t~~d~~~fa~lsGD--~nPiH~D-~~~A~~-~g~~~~iahG~l~~~~~~~~~~~~---~~--~~~~~~~~~--~~ 74 (126)
T cd03447 6 SLTITAPASNEPYARVSGD--FNPIHVS-RVFASY-AGLPGTITHGMYTSAAVRALVETW---AA--DNDRSRVRS--FT 74 (126)
T ss_pred eEEEEChHHHHHHHHHhCC--CCccCCC-HHHHHH-cCCCCCeechhHHHHHHHHHHHHh---cc--CCCcceEEE--EE
Confidence 3467899999999999998 8997422 222212 256788888888777764431111 11 123334444 68
Q ss_pred EEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 100 MELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 100 i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
++|.+|+.+||+|+++.+|.++.+ | .+.++.+++++++|+.|++.+.++
T Consensus 75 ~rf~~PV~~gdtl~~~~~v~~~~~---~-~~~~~~~~~nq~~g~~V~~g~~~v 123 (126)
T cd03447 75 ASFVGMVLPNDELEVRLEHVGMVD---G-RKVIKVEARNEETGELVLRGEAEV 123 (126)
T ss_pred EEEcccCcCCCEEEEEEEEEEEeC---C-eEEEEEEEEECCCCCEEEEEEEEE
Confidence 999999999999999999998632 2 345566677742389998887664
No 20
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=98.09 E-value=5e-05 Score=59.87 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=74.0
Q ss_pred hcCCcCCCeeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCC
Q 027671 12 LLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPR 91 (220)
Q Consensus 12 ~ig~~~~~~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~ 91 (220)
-+|.+++....++++.|+++||...|+ .||+.-++- |.- ..++++.++.-.+...+.......+ + + +..
T Consensus 10 ~vG~~~~~~~~tvt~~di~~FA~~sgD--~nPiH~D~~-~A~-~~g~~~~iahG~~~~a~~~~~~~~~-~-----~-~~~ 78 (142)
T PRK13693 10 KVGDQLPEKTYPLTRQDLVNYAGVSGD--LNPIHWDDE-IAK-VVGLDTAIAHGMLTMGLGGGYVTSW-V-----G-DPG 78 (142)
T ss_pred CCCCCcCccceeeCHHHHHHHHHHhCC--CCccccCHH-HHH-hcCCCCcEecHHHHHHHHHHHHHHh-c-----C-CCc
Confidence 479999878889999999999999998 899742222 211 1245777777766655543321111 1 1 122
Q ss_pred ceeeecEEEEEeccCCCC-C----eEEEEEEEeEEEEcCCceEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSS-A----SIRNEACIAGLHDKGKAAILEIETKSYN 138 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g-~----~l~~~~~v~~v~dkgkG~~v~~~~~~~~ 138 (220)
. +. +++++|.+|+.++ | +|+++.+|.++.+ +++ .+++.+.+.+
T Consensus 79 ~-~~-~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~-~~~-~v~~~~~~~~ 126 (142)
T PRK13693 79 A-VT-EYNVRFTAVVPVPNDGKGAELVFNGRVKSVDP-ESK-SVTIALTATT 126 (142)
T ss_pred c-eE-EEEEEecccEECCCCccceEEEEEEEEEEecc-CCc-EEEEEEEEEE
Confidence 2 32 5899999999753 3 8999999999854 333 5666666665
No 21
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.42 E-value=2.8e-05 Score=59.36 Aligned_cols=35 Identities=6% Similarity=-0.209 Sum_probs=25.3
Q ss_pred CCCCCCEEEEecCCchhHHHHh-hcCCCcccCcccc
Q 027671 183 PKSQPFAVFEDYTQPSQACSIK-FHYCWNSKFFIFE 217 (220)
Q Consensus 183 P~r~Pd~~~~~~t~~~qa~lYR-lSGD~NPiH~~~~ 217 (220)
+...+++.....+++++...|+ +|||+||||++.+
T Consensus 6 ~g~~~~~~~~~tit~~~~~~fa~~sgD~nPiH~D~~ 41 (122)
T PF01575_consen 6 IGQGIRHSRSRTITEADIRQFAALSGDFNPIHVDPE 41 (122)
T ss_dssp TTSEEEEEEEEEEEHHHHHHHHHHHT---HHHH-HH
T ss_pred CCCccccccCEEECHHHHHHHHHhhCCCCcceecHH
Confidence 3445677778889999999995 6999999999876
No 22
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.40 E-value=9.7e-05 Score=56.33 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=68.1
Q ss_pred hcCCcCCC-eeEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCC
Q 027671 12 LLSQKLPE-KTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDP 90 (220)
Q Consensus 12 ~ig~~~~~-~~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~ 90 (220)
.+|..+.. ...+++..|+..||...|+ .||+.-++- |.-+ .|+++.++.-.+...+.......+ ++-+
T Consensus 5 ~~g~~~~~~~~~tit~~~~~~fa~~sgD--~nPiH~D~~-~A~~-~gf~~~ivhG~~~~a~~~~~~~~~------~~~~- 73 (122)
T PF01575_consen 5 RIGQGIRHSRSRTITEADIRQFAALSGD--FNPIHVDPE-YARA-TGFGGPIVHGMLTLALASGLLGDW------LGPN- 73 (122)
T ss_dssp CTTSEEEEEEEEEEEHHHHHHHHHHHT-----HHHH-HH-HHHT-STTSSSB-BHHHHHHHHHHHHHHH------HSTT-
T ss_pred CCCCccccccCEEECHHHHHHHHHhhCC--CCcceecHH-HHhh-cCCCCEEEccHHHHHHHHHHHHHh------ccCc-
Confidence 46777665 6789999999999999998 888632211 2211 134555555444433332221011 1111
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETK 135 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~ 135 (220)
....-+++.++|.+|+.+|++|+++.+|.+..+..+...+++..+
T Consensus 74 ~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~~~ 118 (122)
T PF01575_consen 74 PPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVTVE 118 (122)
T ss_dssp ECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred cceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEEEE
Confidence 345778899999999999999999999999887765444554444
No 23
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=97.04 E-value=0.01 Score=42.35 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=46.6
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
..+-.++.++|++|++.|+++++++++..+ ++..+.+..++.++ +|+++++..++.+.
T Consensus 51 ~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~----~~~~~~~~~~~~~~-~g~~~a~~~~~~~~ 108 (110)
T cd00586 51 GLVVVELEIDYLRPLRLGDRLTVETRVLRL----GRKSFTFEQEIFRE-DGELLATAETVLVC 108 (110)
T ss_pred eEEEEEeEeeEcCccCCCCEEEEEEEEEec----CcEEEEEEEEEECC-CCeEEEEEEEEEEE
Confidence 456688999999999999999999999986 23345666777663 79999999887764
No 24
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=96.92 E-value=0.011 Score=46.16 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=47.1
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
...+-|-++++|++|+.+||+|+++++|.... + -++.++.++.. +|+.|++.+.+++++
T Consensus 87 ~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~---~-~~v~~~~~~~~--~g~~v~~~~~~~~~~ 145 (147)
T PRK00006 87 LVYFAGIDKARFKRPVVPGDQLILEVELLKQR---R-GIWKFKGVATV--DGKLVAEAELMFAIR 145 (147)
T ss_pred EEEEeeeeEEEEccccCCCCEEEEEEEEEEee---C-CEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 34567779999999999999999999988653 2 35666666654 799999999998875
No 25
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0012 Score=56.34 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=76.9
Q ss_pred CCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcC--Cc--eEEEEEEEEEECCCCcEEEEEEEEEEEeccCCCCC
Q 027671 87 QHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKG--KA--AILEIETKSYNAESGELLCMNRMTAFLRGAGGFSN 162 (220)
Q Consensus 87 ~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkg--kG--~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~gg~gg 162 (220)
+++..+=+-+.-.++||+||..|++.+++.+|.+|.+|. .| .+|++.-++. +.|++..+.+.+++.++.--
T Consensus 72 p~~~~RRmWa~G~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h~~~--~~~~l~l~Err~ivY~n~~~--- 146 (273)
T COG3777 72 PLRYRRRMWAGGELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPHVYS--SPGQLCLFERRTIVYTNAPA--- 146 (273)
T ss_pred CcchhhhhhccceEEEecceecCceeehhHHHHHHHHhcccccceeEEeccceec--cCcceeeeeeeeEEEecCCC---
Confidence 666666677777899999999999999999999999984 25 4566555544 37999999999999997641
Q ss_pred CCCCCCCCccCCCCcCCCCCCCCCCCEEEEecCCchhHHHHh---hcCCCcccCcccc
Q 027671 163 SSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQACSIK---FHYCWNSKFFIFE 217 (220)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~P~r~Pd~~~~~~t~~~qa~lYR---lSGD~NPiH~~~~ 217 (220)
..| ....+...|...+...+.+.--+|+| ++=.-.=||.+++
T Consensus 147 -s~p------------~~~~s~~~p~~~w~~~~tptpvllfrYsaltfN~HrIHyD~~ 191 (273)
T COG3777 147 -SKP------------AVKMSVAEPNGKWLKNFTPTPVLLFRYSALTFNGHRIHYDAP 191 (273)
T ss_pred -CCc------------cccCCCCCCCCchhhcCCCCchheeehhhhccCceeeeccCc
Confidence 111 11222233444454556666666666 3333334888765
No 26
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=96.79 E-value=0.019 Score=38.41 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=47.4
Q ss_pred CCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 89 DPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 89 d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
.-...+.++.++.|++|+..|+.+.++.++.+...+ .+.++..+.+ ++|+++++...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~ 99 (100)
T cd03440 41 RGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRS----SVTVEVEVRN-EDGKLVATATATF 99 (100)
T ss_pred CCCeEEEEEEEeEEecCCCCCCEEEEEEEEEecccc----EEEEEEEEEC-CCCCEEEEEEEEe
Confidence 345688999999999999999999999999887443 5677777776 3699998876653
No 27
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=96.71 E-value=0.024 Score=42.41 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=45.1
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
.+-.+-.+.|+||+..|++|.++++|. .+|+ .+...+.++++ ++|+++++.+.|+-
T Consensus 57 ~~t~~~~i~f~rp~~~G~~l~~~a~v~---~~g~-~~~~~~~~i~~-~~~~~va~~~~t~~ 112 (114)
T TIGR02286 57 AVAAQCTIDFLRPGRAGERLEAEAVEV---SRGG-RTGTYDVEVVN-QEGELVALFRGTSR 112 (114)
T ss_pred eEEEEEEEEEecCCCCCCEEEEEEEEE---EeCC-cEEEEEEEEEc-CCCCEEEEEEEEEE
Confidence 456788999999999999999999987 3333 44577778888 58999999988864
No 28
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.64 E-value=0.00061 Score=54.64 Aligned_cols=31 Identities=10% Similarity=-0.145 Sum_probs=25.2
Q ss_pred CEEEEecCCchhHHHHhhcCCCcccCccccc
Q 027671 188 FAVFEDYTQPSQACSIKFHYCWNSKFFIFEL 218 (220)
Q Consensus 188 d~~~~~~t~~~qa~lYRlSGD~NPiH~~~~~ 218 (220)
...+...|..++.+.++++||+||||+++|.
T Consensus 28 ~~~~~~~t~~d~~~fa~~tgD~qpiH~D~e~ 58 (159)
T COG2030 28 HSPWRTVTEADIVLFAAVTGDPNPIHLDPEA 58 (159)
T ss_pred cCCceEecHHHHHHHHHhcCCCCceecCHHH
Confidence 3444567788888888999999999999873
No 29
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=96.46 E-value=0.024 Score=46.56 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=44.0
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
.+=+.+.+.|.+|+.+||+|.+++++... +++ +..++.+++. +|++|++.+.+++.
T Consensus 126 ~~~~i~~irF~kPV~pGD~L~~ea~v~~~---~~~-~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 126 ALTGVANIRFKRPVKLGERVVAKAEVVRK---KGN-KYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred EEEEeeeEEEccCCCCCCEEEEEEEEEEc---cCC-EEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 56688999999999999999999999933 222 3355555554 68999999998876
No 30
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=96.45 E-value=0.023 Score=42.64 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=45.1
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
..+=.+-++.|+||.+.| .|.+++++. |.+..+...+.+++++ +|++|++.+.|+.
T Consensus 61 ~~vt~~l~i~f~~p~~~g-~l~a~a~v~----~~gr~~~~~~~~i~~~-~g~~va~~~~t~~ 116 (117)
T TIGR00369 61 AVVGLELNANHLRPAREG-KVRAIAQVV----HLGRQTGVAEIEIVDE-QGRLCALSRGTTA 116 (117)
T ss_pred eEEEEEEEeeeccccCCC-EEEEEEEEE----ecCceEEEEEEEEECC-CCCEEEEEEEEEc
Confidence 356667899999999998 999999876 3344677788888884 8999999998875
No 31
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=96.23 E-value=0.022 Score=43.67 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=64.2
Q ss_pred eEEechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCccccceehhhhccCcCCCCCCCCCCCCCCCCceeeecEEE
Q 027671 21 TFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQQYM 100 (220)
Q Consensus 21 ~~~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~lvHgeq~i 100 (220)
+...+..+..+|++ .|+ .||++-++- |.- ..++++.++.-.+...+.......+ + .++ ....=+.+++
T Consensus 10 ~~~~~~~~~~~~~~-SgD--~nPiH~d~e-~A~-~~g~~~~iahG~~t~a~~~~~~~~~-~-~~~-----~~~~~~~~~~ 77 (122)
T cd03448 10 EIPTSPDQALLYRL-SGD--YNPLHIDPA-FAK-AAGFPRPILHGLCTYGFAARAVLEA-F-ADG-----DPARFKAIKV 77 (122)
T ss_pred EecCCcChHHHHHH-hCC--CCccccCHH-HHH-HcCCCCceehhHHHHHHHHHHHHHH-h-cCC-----CcceeEEEEE
Confidence 46788899999998 898 889742221 111 1144666666655544432221011 1 011 1122345799
Q ss_pred EEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEE
Q 027671 101 ELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNR 149 (220)
Q Consensus 101 ~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~ 149 (220)
+|.+|+.+||+|+++.++. + + .+.++.++.+ +|+.|++..
T Consensus 78 rF~~PV~~gDtl~~~~~~~-----~-~-~v~~~~~~~~--~g~~v~~g~ 117 (122)
T cd03448 78 RFSSPVFPGETLRTEMWKE-----G-N-RVIFQTKVVE--RDVVVLSNG 117 (122)
T ss_pred EEcCCccCCCEEEEEEEEe-----C-C-EEEEEEEEcc--CCcEEEECC
Confidence 9999999999999988732 2 2 5566666543 677776553
No 32
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=96.18 E-value=0.052 Score=41.35 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=47.6
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
+.+=.+.+++|++|+..||+|++++++..+. +.-+.+..++.+ .+|+++++..++.++-.
T Consensus 53 ~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~----~~s~~~~~~i~~-~~g~~~a~~~~~~v~~d 112 (130)
T PRK10800 53 AFVVRKMTVEYYAPARLDDMLEVQSEITSMR----GTSLTFTQRIVN-AEGTLLNEAEVLIVCVD 112 (130)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEeeC----cEEEEEEEEEEc-CCCeEEEEEEEEEEEEE
Confidence 4455588999999999999999999999875 234445555776 37999999999888764
No 33
>PRK11688 hypothetical protein; Provisional
Probab=96.10 E-value=0.069 Score=42.35 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=45.9
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
.++=.+-++.|.||.. |+.|.++++|.. .++.++.++.++++ ++|++|++.+.|+++
T Consensus 97 ~~vTi~l~i~fl~p~~-g~~l~a~a~v~~----~g~r~~~~~~~i~~-~~g~lvA~a~~t~~v 153 (154)
T PRK11688 97 RLGTIDLRVDYLRPGR-GERFTATSSVLR----AGNKVAVARMELHN-EQGVHIASGTATYLV 153 (154)
T ss_pred cceEEEEEEEeeccCC-CCeEEEEEEEEE----ccCCEEEEEEEEEC-CCCCEEEEEEEEEEe
Confidence 4566788999999984 899999999874 23346677888888 489999999999875
No 34
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=95.99 E-value=0.088 Score=38.43 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=44.2
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
.+=.+.+++|++|++. +.+.+++++... ++..+.++.+++++ +|+++++...++.
T Consensus 58 ~~~~~~~i~f~~p~~~-~~v~~~~~v~~~----g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 58 AVTVDLNVNYLRPARG-GDLTARARVVKL----GRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred eEEEEEEEeEEcCCCC-CeEEEEEEEEec----CceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 4445779999999999 999999998754 45678888888873 6999999887754
No 35
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=95.91 E-value=0.076 Score=40.11 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
..+-+-++++|++|+.+|++|++++++....+ ..+.++.+++. +|+.+++.+.++.
T Consensus 74 ~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~----~~~~~~~~~~~--~g~~v~~~~~~~~ 129 (131)
T cd01288 74 VYFAGIDKARFRKPVVPGDQLILEVELLKLRR----GIGKFKGKAYV--DGKLVAEAELMFA 129 (131)
T ss_pred EEEeeecccEEccccCCCCEEEEEEEEEEeeC----CEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 34566799999999999999999999886442 25555566654 6899999887764
No 36
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=95.86 E-value=0.1 Score=38.61 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=43.5
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECC----CCcEEEEEEEEEEEec
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAE----SGELLCMNRMTAFLRG 156 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~----~Ge~V~~~~st~~~Rg 156 (220)
.++.+ +++|++|+..|+.|.+++++..+. +..+.++.++++++ +++++++...++++..
T Consensus 52 ~~~~~-~~~f~~p~~~gd~l~i~~~v~~~g----~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 52 TASVD-RIDFLKPVRVGDVVELSARVVYTG----RTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEC-ceEEcCccccCcEEEEEEEEEEec----CCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 44444 899999999999999999998872 23344455555532 3468999999998884
No 37
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=95.84 E-value=0.07 Score=36.31 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=39.4
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLC 146 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~ 146 (220)
...+=.+.++.|++|+..||.|++++++..+-. ..++++.++++ ++++++|
T Consensus 29 ~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~----~~~~~~~~v~~-~~~~~~~ 79 (79)
T PF03061_consen 29 RGVVTVELSIDFLRPVRPGDTLRVEARVVRVGR----KSFTVEVEVYS-EDGRLCA 79 (79)
T ss_dssp EEEEEEEEEEEESS-BBTTSEEEEEEEEEEEES----SEEEEEEEEEE-TTSCEEE
T ss_pred cceEEEEEEEEEccccCCCeEEEEEEEEEEECC----EEEEEEEEEEE-CCCcEEC
Confidence 345667899999999999999999999987643 46677777777 4777765
No 38
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=95.79 E-value=0.06 Score=41.70 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=40.8
Q ss_pred CceeeecEEEEEeccCCCCC-eEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSA-SIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNR 149 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~-~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~ 149 (220)
...+-+-.+++|++|+.+|+ +|++++++..+.+... .++..+.+++. +|+.|++..
T Consensus 82 ~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~-~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 82 VPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREG-GMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEET-TEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEeccccEEEECccEeCCCcEEEEEEEEEEeecccC-CEEEEEEEEEE--CCEEEEEEC
Confidence 35688999999999999999 9999999999854433 34445566555 699998863
No 39
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=95.62 E-value=0.098 Score=40.43 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=43.3
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
...+-+-+.++|++|+.+|++|++++++... .. -++.++.+++. +|+.+++.+.++.
T Consensus 83 ~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~---~~-~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 83 LVYFAGIDKAKFRRPVVPGDQLILHAEFLKK---RR-KIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred EEEEeecceeEECCccCCCCEEEEEEEEEEc---cC-CEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 3467788999999999999999999998732 22 24555566543 6999999988764
No 40
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=95.35 E-value=0.0059 Score=48.03 Aligned_cols=14 Identities=14% Similarity=-0.192 Sum_probs=12.7
Q ss_pred hhcCCCcccCcccc
Q 027671 204 KFHYCWNSKFFIFE 217 (220)
Q Consensus 204 RlSGD~NPiH~~~~ 217 (220)
++|||+||||++.|
T Consensus 32 ~~sgD~nPiH~D~~ 45 (142)
T PRK13693 32 GVSGDLNPIHWDDE 45 (142)
T ss_pred HHhCCCCccccCHH
Confidence 68999999999976
No 41
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=95.34 E-value=0.16 Score=40.39 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=49.8
Q ss_pred CceeeecEEEEEeccCCCCC-eEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSA-SIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~-~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
...+=+-+.++|++|+.+|+ +|+++++|..+...+.+-++..+..++. +|++|++.+..-+
T Consensus 84 ~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~~~ 145 (150)
T cd01287 84 QGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDIAV 145 (150)
T ss_pred eeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEccEE
Confidence 34556677899999999998 8999999999987666677777788776 6999999876554
No 42
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=95.29 E-value=0.21 Score=37.40 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=46.8
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEecc
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 157 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~ 157 (220)
..+=.+..++|++|+..||+|++++++..+. +.-+.+..++.. +|+++++..++.+....
T Consensus 52 ~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~----~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 52 VFVVRSMELDYLKPARLDDLLTVTTRVVELK----GASLVFAQEVRR--GDTLLCEATVEVACVDA 111 (126)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEecC----ceEEEEEEEEEe--CCEEEEEEEEEEEEEEC
Confidence 3566689999999999999999999997754 334445556554 58999999988887654
No 43
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=95.20 E-value=0.2 Score=37.66 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=42.4
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNR 149 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~ 149 (220)
...+=+-++++|++|+.+|++|++++++....+ .++.++.+++. +|+.+++.+
T Consensus 74 ~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~----~~~~~~~~~~~--~g~~v~~~~ 126 (131)
T cd00493 74 LGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRR----GLGKFDGRAYV--DGKLVAEAE 126 (131)
T ss_pred EEEEEEcceeEECCCcCCCCEEEEEEEEEEeeC----CEEEEEEEEEE--CCEEEEEEE
Confidence 356677799999999999999999999987654 35666666666 589999887
No 44
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=95.16 E-value=0.36 Score=35.89 Aligned_cols=63 Identities=10% Similarity=0.184 Sum_probs=44.0
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcE--EEEEEEEEEEeccC
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGEL--LCMNRMTAFLRGAG 158 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~--V~~~~st~~~Rg~g 158 (220)
+++=.+.+++|++|+..+|++++++++.++..+ -+.++.++++..+|+. +++...+.+.-...
T Consensus 43 ~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~----s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~ 107 (121)
T PF13279_consen 43 GFVVAESEIDYLRPLRFGDRLEVETRVEEIGGK----SFRFEQEIFRPADGKGELAATGRTVMVFVDYK 107 (121)
T ss_dssp EEEEEEEEEEE-S--BTTSEEEEEEEEEEEESS----EEEEEEEEEECSTTEEEEEEEEEEEEEEEETT
T ss_pred eEEEEEEEEEEcccccCCCEEEEEEEEEEECCc----EEEEEEEEEEcCCCceEEEEEEEEEEEEEeCC
Confidence 456678999999999999999999999775433 3455555555234544 99999998887554
No 45
>PLN02864 enoyl-CoA hydratase
Probab=94.97 E-value=0.24 Score=44.04 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=64.8
Q ss_pred CCcCCCeeE-EechHHHHHHHHhcCCCCCCCCCcccccceecccCcCCcccccee--hhhhccCcCCCCCCCCCCCCCCC
Q 027671 14 SQKLPEKTF-TYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTF--SALFSFELEPSGAIDLPGLQHDP 90 (220)
Q Consensus 14 g~~~~~~~~-~~~~rd~~~yAlavG~~~~dP~~~~~L~y~yE~~~~~~~~apPTf--~~vl~~~~~~~~~~~~p~~~~d~ 90 (220)
+...+.... ..++.+..+||...|+ .||+.-++. |.- ..|++..++.=.+ +.+...-. .+ + .+-+.
T Consensus 184 p~~~pd~~~~~~t~~~~~~~a~lSGD--~NPiH~d~~-~A~-~~gf~~~IaHGm~t~g~~~~~~~--~~-~----~~~~~ 252 (310)
T PLN02864 184 PKSQPDAVFEDQTQPSQALLYRLSGD--YNPLHSDPM-FAK-VAGFTRPILHGLCTLGFAVRAVI--KC-F----CNGDP 252 (310)
T ss_pred CCCCCCeEEeeccChhHHHHHHhhCC--CCcccCCHH-HHh-hCCCCCceeccHHHHHHHHHHHH--hh-h----cCCCC
Confidence 333444433 6788888999999998 899753222 211 1133444443322 22222111 01 0 11222
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
..+ .+++++|.+|+.+||+|.++.+. .+ ..+.+++.+ + ++|++|.+...++
T Consensus 253 ~~~--~~~~~rF~~PV~pGdtl~~~~~~-----~~--~~v~~~~~~-~-~~g~~vl~G~a~~ 303 (310)
T PLN02864 253 TAV--KTISGRFLLHVYPGETLVTEMWL-----EG--LRVIYQTKV-K-ERNKAVLSGYVDL 303 (310)
T ss_pred ceE--EEEEEEEcCCccCCCEEEEEEEe-----CC--CEEEEEEEE-e-cCCeEEEEEEEEE
Confidence 222 36899999999999999766542 22 235555554 4 4788888876554
No 46
>PRK10254 thioesterase; Provisional
Probab=94.77 E-value=0.48 Score=37.08 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=47.4
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
...+=.|-.+.|.||...| .|.+++++.. .+..+.+.+.+++| ++|++++..+.|..+.|
T Consensus 78 ~~~vTiel~in~Lrp~~~g-~l~a~a~vi~----~Gr~~~v~~~~v~d-~~g~l~a~~~~t~~i~~ 137 (137)
T PRK10254 78 QCVVGTELNATHHRPVSEG-KVRGVCQPLH----LGRQNQSWEIVVFD-EQGRRCCTCRLGTAVLG 137 (137)
T ss_pred CeEEEEEEEeEEeccCcCC-eEEEEEEEEe----cCcCEEEEEEEEEc-CCCCEEEEEEEEEEEeC
Confidence 3567778899999999766 7888888543 33456777888888 58999999999998864
No 47
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.63 E-value=0.34 Score=37.62 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=44.9
Q ss_pred eeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 94 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 94 vHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
+=.+-.+.|.||...|+ +++++++..+ |+ .+.+.+.++++++.|++|+..+.|+++..
T Consensus 81 ~ti~l~i~flr~~~~g~-v~a~a~v~~~---G~-~~~v~~i~v~~~~~~~lva~~~~t~~v~~ 138 (141)
T COG2050 81 VTLELNINFLRPVKEGD-VTAEARVLHL---GR-RVAVVEIEVKNDEGGRLVAKGTGTYAVLR 138 (141)
T ss_pred EEEEEEehhccCCCCCe-EEEEEEEEee---CC-EEEEEEEEEEECCCCeEEEEEEEEEEEec
Confidence 33477899999999999 9999999876 33 33446777775456799999999998754
No 48
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=94.52 E-value=0.44 Score=37.08 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=49.6
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEeccC
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAG 158 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~g 158 (220)
++=.+.+++|+||+.-||.|+++++|..+. +.-+++..+++++ ++++++.+.+.++-...
T Consensus 57 ~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~----~~s~~~~~~i~~~--~~l~a~~~~~~V~v~~~ 116 (137)
T COG0824 57 FVVVEAEIDYLRPARLGDVLTVRTRVEELG----GKSLTLGYEIVNE--DELLATGETTLVCVDLK 116 (137)
T ss_pred EEEEEEEeEECCCccCCCEEEEEEEEEeec----CeEEEEEEEEEeC--CEEEEEEEEEEEEEECC
Confidence 566689999999999999999999998874 4457777888773 49999999999987644
No 49
>PRK10293 acyl-CoA esterase; Provisional
Probab=94.26 E-value=0.55 Score=36.60 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=45.1
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
..+=.|-.+.|.||...| +|++++++.. .+..+.+.+.+++| ++|++++..+.|+.+
T Consensus 79 ~~vTiel~infl~p~~~g-~l~a~a~vv~----~Gr~~~~~~~~v~d-~~g~l~A~~~~t~~i 135 (136)
T PRK10293 79 KVVGLEINANHVRSAREG-RVRGVCKPLH----LGSRHQVWQIEIFD-EKGRLCCSSRLTTAI 135 (136)
T ss_pred eEEEEEEEeEEecccCCc-eEEEEEEEEe----cCCCEEEEEEEEEe-CCCCEEEEEEEEEEE
Confidence 457778899999999876 7888887653 33467777888888 489999999999875
No 50
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=94.23 E-value=0.6 Score=34.10 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=39.2
Q ss_pred eeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 94 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 94 vHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
+=.+.+++|++|+..||++++++++..+. +.-+.+..++.+. +|+.++...++.
T Consensus 50 ~v~~~~i~y~~~~~~gd~v~v~~~~~~~~----~~s~~~~~~i~~~-~~~~~~~~~~~~ 103 (117)
T TIGR00051 50 VVVNINIEYKKPARLDDVLEIRTQIEELN----GFSFVFSQEIFNE-DEALLKAATVIV 103 (117)
T ss_pred EEEEEEEEECCcccCCCEEEEEEEEEecC----cEEEEEEEEEEeC-CCcEEEeeEEEE
Confidence 44578999999999999999999999864 2334555666663 566666665533
No 51
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=93.71 E-value=0.46 Score=33.77 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=43.1
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
...-.+..+.||+|...++.+..++++.. . +..+...+.++++ ++|++|++...+++
T Consensus 42 ~~~t~~~~i~F~~~~~~~~~~~~~~~~~~---~-g~~~~~~~~~i~~-~~G~lva~~~~~~~ 98 (99)
T cd00556 42 GFASLDHHIYFHRPGDADEWLLYEVESLR---D-GRSRALRRGRAYQ-RDGKLVASATQSFL 98 (99)
T ss_pred CeeeeEEEEEEcCCCCCCccEEEEEEecc---c-CCCceEEEEEEEC-CCCcEEEEEEEeEc
Confidence 34556889999999999999998888753 2 3345556677777 47999999988764
No 52
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=93.69 E-value=0.56 Score=44.03 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=47.4
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
...+=|-++++|++|+.+||+|++++++..... +.++.++.+++. +|++|++.+.++.++
T Consensus 401 lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~---~giv~f~g~~~v--dGelVaeael~~~v~ 460 (464)
T PRK13188 401 STYFMKIDKVKFRQKVVPGDTLIFKVELLSPIR---RGICQMQGKAYV--NGKLVCEAELMAQIV 460 (464)
T ss_pred eEEEEeccEEEEcCCCCCCCEEEEEEEEEEEec---CCEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 345666689999999999999999999887442 346666666664 799999999988775
No 53
>PLN02322 acyl-CoA thioesterase
Probab=93.14 E-value=1.1 Score=35.76 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=45.5
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEEC-----CCCcEEEEEEEEEEEe
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNA-----ESGELLCMNRMTAFLR 155 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~-----~~Ge~V~~~~st~~~R 155 (220)
..+=.+-.+.|+||...|+.|.+++++.. .+..+.+.+.++++. +.|.++++.+.|+.+.
T Consensus 70 ~~vTiel~infLrpa~~G~~L~Aea~vv~----~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 70 RVAGIQLSINHLKSADLGDLVFAEATPVS----TGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred ceEEEEEEEEEeccCCCCCEEEEEEEEEe----cCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 46777889999999999999999997753 233455666777763 1378999999998654
No 54
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=92.86 E-value=0.43 Score=36.85 Aligned_cols=58 Identities=14% Similarity=0.307 Sum_probs=39.4
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
++=-+-+++|+|| +.+.|+.++++.+ .+.++...+.++.+++| .+|+.|++.+.+..+
T Consensus 75 ~~~k~~~i~f~kp--a~g~v~a~~~~~~-e~~~~~~~~~~~v~i~D-~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 75 VWDKSAEIDFLKP--ARGDVTATAELTE-EQIGERGELTVPVEITD-ADGEVVAEATITWYV 132 (132)
T ss_dssp EEEEEEEEEE-S-----S-EEEEEE-TC-CHCCHEEEEEEEEEEEE-TTC-EEEEEEEEEEE
T ss_pred EEEEeeEEEEEec--cCCcEEEEEEcCH-HHhCCCcEEEEEEEEEE-CCCCEEEEEEEEEEC
Confidence 4556788999999 7788999999988 32343466778888999 599999999988764
No 55
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.72 E-value=1.3 Score=41.86 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=46.7
Q ss_pred eeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 94 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 94 vHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
+=.+.+++|+||+..||+++++++|..+. +.-+.++.++++ .+|+++++..++.++-.
T Consensus 397 vvv~~~i~y~rp~~~gD~v~I~t~v~~~~----~~s~~~~~~i~~-~~g~l~A~g~~~~v~vD 454 (495)
T PRK07531 397 YTVETHIRHLGEAKAGQALHVETQLLSGD----EKRLHLFHTLYD-AGGELIATAEHMLLHVD 454 (495)
T ss_pred EEEEEEEEEcccCCCCCEEEEEEEEEecC----CcEEEEEEEEEC-CCCcEEEEEEEEEEEEE
Confidence 44689999999999999999999998764 244555666676 47999999998888764
No 56
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=90.92 E-value=0.08 Score=41.97 Aligned_cols=21 Identities=5% Similarity=-0.436 Sum_probs=17.1
Q ss_pred chhHHHHhhcCCCcccCcccc
Q 027671 197 PSQACSIKFHYCWNSKFFIFE 217 (220)
Q Consensus 197 ~~qa~lYRlSGD~NPiH~~~~ 217 (220)
.+-...-++|||.||||++.|
T Consensus 27 ~di~~FA~~sgD~nPiH~D~e 47 (149)
T cd03450 27 ERIDQFADATGDHQWIHVDPE 47 (149)
T ss_pred HHHHHHHHhhCCCCccccCHH
Confidence 355566699999999999876
No 57
>PLN02370 acyl-ACP thioesterase
Probab=90.32 E-value=2.6 Score=39.10 Aligned_cols=61 Identities=5% Similarity=-0.012 Sum_probs=49.0
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
.-|-....|+|+||..-||+|++++.+..+ ++.....+.+++|.++|+.+++..++.++-.
T Consensus 196 ~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~----~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 196 IWVVTRMQVLVDRYPTWGDVVQVDTWVSAS----GKNGMRRDWLVRDCKTGETLTRASSVWVMMN 256 (419)
T ss_pred eEEEEEEEEEeCcCCCCCCEEEEEEEEeeC----CCCEEEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence 457788999999999999999999999886 2344455677777447999999999887754
No 58
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=90.14 E-value=3.6 Score=33.44 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=43.1
Q ss_pred eeeecEEEEEeccCCCCCe-EEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSAS-IRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 151 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~-l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st 151 (220)
.+=|-++++|++++.++++ ++.+++|..+.. .++-++..+.+++. +|+++++.+.-
T Consensus 105 ~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~-~~~~~~~~~~~i~v--~g~~va~a~~~ 161 (172)
T PRK05174 105 RALGVGEVKFTGQVLPTAKKVTYEIDIKRVIN-RKLVMGIADGRVLV--DGEEIYTAKDL 161 (172)
T ss_pred EEeeccEEEECccCcCCCEEEEEEEEEEEEec-CCCCEEEEEEEEEE--CCEEEEEEEee
Confidence 4557788999999999998 899999998854 44445566677665 68999888543
No 59
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=90.11 E-value=3.4 Score=32.04 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=43.9
Q ss_pred CceeeecEEEEEeccC-CCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 91 RLLLHGQQYMELYKPF-PSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl-~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
.+.+=|=..++|++|. |.|++|++++++..... + -+...+.+++. +|+++++.+.+++.
T Consensus 77 ~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~--~-~~~~~~~~~~v--~~~~va~a~l~~~~ 136 (138)
T cd01289 77 PGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGD--S-GLGVFECTIED--QGGVLASGRLNVYQ 136 (138)
T ss_pred cEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCC--C-cEEEEEEEEEE--CCEEEEEEEEEEEc
Confidence 4577788999999996 55999999888765432 2 24455566655 68999999988875
No 60
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=88.83 E-value=3.2 Score=33.58 Aligned_cols=55 Identities=7% Similarity=-0.000 Sum_probs=41.4
Q ss_pred eeeecEEEEEeccCCCCCeE-EEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASI-RNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRM 150 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l-~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~s 150 (220)
.+=|-.+++|++|+.+++++ +.+++|..+....++ ++..+.+++. +|+++++.+.
T Consensus 102 ~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~-~~~~~~~i~v--~g~~va~a~~ 157 (169)
T TIGR01749 102 RALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLV-MGIADGEVLV--DGRLIYTASD 157 (169)
T ss_pred EEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCc-EEEEEEEEEE--CCEEEEEEEC
Confidence 44566799999999999997 899998887654333 5666777665 6888888654
No 61
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=87.60 E-value=1.9 Score=33.51 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=41.7
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEE---------EEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGL---------HDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v---------~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
..+|=-+-.+.|+||+.. .+..++++.+- ..+++-..+.++.++++ +|+++++.+.++.+
T Consensus 68 ~~~vt~~~~i~yl~P~~~--~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~ 136 (138)
T TIGR02447 68 GDIVIADSHIRYLAPVTG--DPVANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVA 136 (138)
T ss_pred CcEEEEEeeeEEcCCcCC--CeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 356777899999999965 36666666431 12333355667777776 57999999988875
No 62
>PRK10694 acyl-CoA esterase; Provisional
Probab=85.96 E-value=5.4 Score=30.86 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=35.6
Q ss_pred EEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEE-----CCCCc--EEEEEEEEEEEecc
Q 027671 98 QYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYN-----AESGE--LLCMNRMTAFLRGA 157 (220)
Q Consensus 98 q~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~-----~~~Ge--~V~~~~st~~~Rg~ 157 (220)
..+.|++|+..||.|.++++|..+-.+ .++++.+++. +..|+ ++++...|++.-..
T Consensus 60 d~i~F~~Pv~~Gd~l~~~a~V~~~g~s----S~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~ 122 (133)
T PRK10694 60 EGMTFLRPVAVGDVVCCYARCVKTGTT----SISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP 122 (133)
T ss_pred CceEECCCcccCcEEEEEEEEEEccCc----eEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC
Confidence 367999999999999999999765433 2223333221 11233 46677778776543
No 63
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=85.95 E-value=4 Score=34.94 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=43.7
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
..+.=.+..|.||+|++.++-+-.+++....- .|+| ..+.+++| ++|++|++..+.-++|
T Consensus 212 ~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~-~Grg---~~~~~l~d-~~G~lvAs~~Qe~l~r 271 (271)
T TIGR00189 212 SMAASLDHSIWFHRPFRADDWLLYKCSSPSAS-GSRG---LVEGKIFT-RDGVLIASTVQEGLVR 271 (271)
T ss_pred cEEEeeeeeEEEeCCCCCCeeEEEEEEecccc-CCce---EEEEEEEC-CCCCEEEEEEeeeecC
Confidence 44566789999999988888888777655432 2223 23468888 5999999998887765
No 64
>PLN02647 acyl-CoA thioesterase
Probab=84.38 E-value=7.7 Score=36.23 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=42.7
Q ss_pred EEEEEeccCCCCCeEEEEEEEeEEEEcCCc---eEEEEEEEEEECC--CCcEEEEEEEEEEEeccC
Q 027671 98 QYMELYKPFPSSASIRNEACIAGLHDKGKA---AILEIETKSYNAE--SGELLCMNRMTAFLRGAG 158 (220)
Q Consensus 98 q~i~~~rPl~~g~~l~~~~~v~~v~dkgkG---~~v~~~~~~~~~~--~Ge~V~~~~st~~~Rg~g 158 (220)
..+.|++|++.|+.|.++++|.-......| .-+.+...+.+.. .++++.+...|+++...+
T Consensus 339 d~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~ 404 (437)
T PLN02647 339 DHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEA 404 (437)
T ss_pred cceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccc
Confidence 468999999999999999999887655322 3344444444432 345677788888876553
No 65
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=83.74 E-value=8 Score=31.06 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=36.6
Q ss_pred EEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECC--CCcEEEEEEEEEEEeccC
Q 027671 98 QYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAE--SGELLCMNRMTAFLRGAG 158 (220)
Q Consensus 98 q~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~--~Ge~V~~~~st~~~Rg~g 158 (220)
.++.|.+|++.||.|.+.++|..+-.. -.-|.++....+-. ..+++.....+++.-...
T Consensus 62 d~v~F~~Pv~vGd~v~~~a~v~~~GrT--Sm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~ 122 (157)
T COG1607 62 DSVDFKKPVRVGDIVCLYARVVYTGRT--SMEVGVEVWAEDIRSGERRLATSAYFTFVAVDED 122 (157)
T ss_pred ceEEEccccccCcEEEEEEEEeecCcc--cEEEEEEEEEecccCCcceEeeeEEEEEEEECCC
Confidence 478899999999999999998765322 22233333322222 234566667777665443
No 66
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=83.60 E-value=12 Score=29.57 Aligned_cols=94 Identities=10% Similarity=0.036 Sum_probs=57.5
Q ss_pred eecccCcCCccccceehhhhccCcCCCCC--CCCCCCCCC-CCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCce
Q 027671 52 VYHENGQQFIQVLPTFSALFSFELEPSGA--IDLPGLQHD-PRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAA 128 (220)
Q Consensus 52 ~yE~~~~~~~~apPTf~~vl~~~~~~~~~--~~~p~~~~d-~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~ 128 (220)
.+.+| |.--|.||-||...+..+.. +..-..+.. -.....|=+..+|.+|+.+|+.+.+++.+...+- +.
T Consensus 47 fF~gH----FP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~---~~ 119 (147)
T COG0764 47 FFTGH----FPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRR---LG 119 (147)
T ss_pred eeCCc----CCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecc---cc
Confidence 45566 77788888888655310000 000000111 2557889999999999999999888887765432 23
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 129 ILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 129 ~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
+.....+... +|++|++.......
T Consensus 120 ~~~~~~~a~V--dg~~v~~a~~~~~~ 143 (147)
T COG0764 120 IGKAKGVATV--DGKVVAEAELLFAG 143 (147)
T ss_pred eEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 3333344333 68998888766554
No 67
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=82.04 E-value=0.6 Score=45.73 Aligned_cols=24 Identities=0% Similarity=-0.312 Sum_probs=19.8
Q ss_pred cCCchhHHHH-hhcCCCcccCcccc
Q 027671 194 YTQPSQACSI-KFHYCWNSKFFIFE 217 (220)
Q Consensus 194 ~t~~~qa~lY-RlSGD~NPiH~~~~ 217 (220)
.++...-..| ++|||+||||++.|
T Consensus 540 tvt~~dI~~FA~~sgD~nPiH~D~e 564 (663)
T TIGR02278 540 TVTEADIALFAALSGDHFYAHMDEI 564 (663)
T ss_pred EEcHHHHHHHHHhhCCCCcccCCHH
Confidence 4667778888 57999999999875
No 68
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=81.51 E-value=0.64 Score=45.59 Aligned_cols=24 Identities=0% Similarity=-0.348 Sum_probs=19.7
Q ss_pred cCCchhHHHH-hhcCCCcccCcccc
Q 027671 194 YTQPSQACSI-KFHYCWNSKFFIFE 217 (220)
Q Consensus 194 ~t~~~qa~lY-RlSGD~NPiH~~~~ 217 (220)
.++...-..| .+|||+||||++.|
T Consensus 552 tvt~~di~~FA~lsgD~nPiH~D~e 576 (675)
T PRK11563 552 TVTEADIVNFACLSGDTFYAHMDEI 576 (675)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHH
Confidence 4666777788 57999999999976
No 69
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=80.84 E-value=16 Score=31.33 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=43.4
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
-|-....|+++|+..-|++|++++.+.+.. +....-..++++.++|+++++..|..++-.
T Consensus 61 Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~----~~~~~R~f~i~d~~~G~~l~~a~s~WvliD 120 (261)
T PF01643_consen 61 WVLSRYQIEIHRYPRWGEKITIETWPSGFK----RFFAYRDFEIYDAEDGELLARATSIWVLID 120 (261)
T ss_dssp EEEEEEEEEESS--BTT-EEEEEEEEEEE-----SSEEEEEEEEE--TTS-EEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCCCEEEEEEEeccCC----CcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Confidence 366689999999999999999999988743 466667777777348999999999888754
No 70
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=79.74 E-value=14 Score=27.01 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 027671 89 DPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 153 (220)
Q Consensus 89 d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~ 153 (220)
+...+.=..+.|.||+|....+-+..+.+... ..+-....+.++++ ++|++|++..+.-+
T Consensus 44 ~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~----~~~gr~~~~~~l~~-~~G~LvAs~~Q~~l 103 (104)
T cd03444 44 DASASASLDHAIWFHRPFRADDWLLYEQRSPR----AGNGRGLVEGRIFT-RDGELVASVAQEGL 103 (104)
T ss_pred cCcceEeeeEEEEEeCCCCCCceEEEEEECcc----ccCCeeEEEEEEEC-CCCCEEEEEEEeee
Confidence 34555667899999999887665555554432 23334455677888 48999999987644
No 71
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=79.71 E-value=24 Score=28.04 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=49.2
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEeccCC
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGG 159 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~gg 159 (220)
.+.|=.+-.+.|..|-..|+.|.+++++..+ || .+-.++++++...+|+..+..+-|.+++....
T Consensus 80 ~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~---Gk-~la~t~v~l~~K~t~kiia~grhtk~~~~~~~ 144 (148)
T KOG3328|consen 80 KPGVSVDLSVSYLSSAKLGEELEIEATVVRV---GK-TLAFTDVELRRKSTGKIIAKGRHTKYFRPASK 144 (148)
T ss_pred CCceEEEEEhhhccccCCCCeEEEEEEEeec---Cc-eEEEEEEEEEEcCCCeEEEecceEEEeecCCC
Confidence 3456667788999999999999999998753 34 34444555566668999999999999986653
No 72
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=78.44 E-value=13 Score=32.52 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=44.1
Q ss_pred CceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 027671 91 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 156 (220)
Q Consensus 91 ~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg 156 (220)
..+.=..+.|.||+|+.+++-+-.+.+.... +.|. -..+.++++ ++|++|++..+--++|-
T Consensus 224 ~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a---~~gr-~~~~g~i~~-~~G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 224 MQIATIDHSMWFHRPFNLNEWLLYSVESTSA---SSAR-GFVRGEFYT-QDGVLVASTVQEGVMRN 284 (286)
T ss_pred ceEEeeeEeEEEeCCCCCCceEEEEEECCcc---cCCc-eEEEEEEEC-CCCCEEEEEEeeEEEEe
Confidence 3445678999999999988888777665433 2222 223347787 59999999999988884
No 73
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=76.67 E-value=16 Score=32.27 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=50.8
Q ss_pred CCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEecc
Q 027671 88 HDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 157 (220)
Q Consensus 88 ~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~ 157 (220)
.+..++.=..+.+.||||+..+|-|-...+..+..+- +| -++..+++ .+|+++|+...--++|..
T Consensus 221 ~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~-rg---l~~G~lf~-r~G~LiA~~~QEG~~r~~ 285 (289)
T COG1946 221 TPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGG-RG---LVRGQLFD-RDGQLIASVVQEGLIRYH 285 (289)
T ss_pred cCcceEeeccceEEEeccccCCCEEEEEeeCCcccCC-cc---eeeeEEEc-CCCCEEEEEeeeEEEecc
Confidence 4667888889999999999999999988887776542 22 23456677 589999999988888853
No 74
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=75.80 E-value=25 Score=27.78 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCCCCCceeeecEEEEEeccCCCCCeEEEEEEEe------EEEE---cCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 86 LQHDPRLLLHGQQYMELYKPFPSSASIRNEACIA------GLHD---KGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 86 ~~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~------~v~d---kgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
.+++ ..+|=.+..|+|++|+... ++.++++. ...+ +++-+-+.+++++++ +|+.+++-+..+++
T Consensus 70 ~~~~-~~IVi~~~~i~Y~~Pv~~d--~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~ 142 (144)
T PF09500_consen 70 AGLN-GDIVIADSNIRYLKPVTGD--FTARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVA 142 (144)
T ss_dssp HT----EEEEEEEEEEE-S---S----EEEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEE
T ss_pred hCCC-CcEEEEeCceEEcCCCCCC--cEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 3555 6789999999999999865 55555555 1111 123377899999987 68888888888775
No 75
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=69.53 E-value=49 Score=27.65 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=38.0
Q ss_pred eeeecEEEEEe-ccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027671 93 LLHGQQYMELY-KPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 154 (220)
Q Consensus 93 lvHgeq~i~~~-rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~ 154 (220)
+.=.+..|.|| .|...++-|-++.+...+. .| ....+.+++| ++|++|++..+..++
T Consensus 198 ~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~---~G-r~~~~~~l~d-~~G~lvA~~~Q~~lv 255 (255)
T PF13622_consen 198 PATLDHTIHFHRLPFDGDEWLLLEARSPRAG---NG-RALMEGRLWD-EDGRLVASSRQEALV 255 (255)
T ss_dssp EEEEEEEEEECSHCCTTTS-EEEEEEEEEEE---TT-EEEEEEEEEE-TTS-EEEEEEEEEE-
T ss_pred cccceeEEEEEeCCccCCceEEEEEEEeEeC---CC-EEEEEEEEEC-CCCCEEEEEEEEeeC
Confidence 34567777764 3666688888888766554 23 2445677888 589999999888764
No 76
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=65.58 E-value=64 Score=27.32 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCCceeeecEEEEEec-cCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027671 88 HDPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 155 (220)
Q Consensus 88 ~d~~~lvHgeq~i~~~r-Pl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~R 155 (220)
-+-..+-.+=.++++++ |.+.++.+.+.++. .+.++-.+.....++| ++|+++++...-.+-|
T Consensus 225 ~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dv~v~d-~~G~~~~~~~gl~~~~ 288 (295)
T PF14765_consen 225 RGRVFLPVSIERIRIFRAPPPPGDRLYVYARL----VKSDDDTITGDVTVFD-EDGRVVAELEGLTFRR 288 (295)
T ss_dssp TTSEEEEEEEEEEEESSS--SSTSEEEEEEEE----ESTTTTEEEEEEEEEE-TTSBEEEEEEEEEEEE
T ss_pred CCCEEcccEeCEEEEEeccCCCCCEEEEEEEE----ecccceEEEEEEEEEC-CCCCEEEEEccEEEEE
Confidence 34455667778999995 88999999999999 3334456667778888 5899999887766554
No 77
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=57.00 E-value=73 Score=25.55 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCc---eEEEEEEEEEECCCCc
Q 027671 90 PRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKA---AILEIETKSYNAESGE 143 (220)
Q Consensus 90 ~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG---~~v~~~~~~~~~~~Ge 143 (220)
|..+|=..-+-+|+|||.+ -.++.+..+.++..+.+. .++.++.+.+|+..|+
T Consensus 93 LsdilI~~~~S~Frr~i~~-~~F~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~ 148 (157)
T PF10862_consen 93 LSDILITSFKSRFRRPINP-RHFSGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGR 148 (157)
T ss_dssp HHHEEEEEE-EEE-S---T-TSEEEEEEEE--EEE-SSS-EEEEEEEEEEE-----E
T ss_pred cCceeEeechhhhhcccCc-ceEEEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCc
Confidence 5678888889999999976 578899999999999887 7788888899864453
No 78
>PLN02647 acyl-CoA thioesterase
Probab=56.66 E-value=65 Score=30.19 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEEEeccCCCCCeEEEEEEEeEEEEcCC-ceEEEEEEEEEE--CC--CCcEEEEEEEEEEEecc
Q 027671 98 QYMELYKPFPSSASIRNEACIAGLHDKGK-AAILEIETKSYN--AE--SGELLCMNRMTAFLRGA 157 (220)
Q Consensus 98 q~i~~~rPl~~g~~l~~~~~v~~v~dkgk-G~~v~~~~~~~~--~~--~Ge~V~~~~st~~~Rg~ 157 (220)
.+|.|++|+..|+.|.+.++|.-+ |+ -..|.++....+ .. ...++++...|++.+..
T Consensus 150 D~i~F~~Pi~~g~~v~l~g~Vt~v---GrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 150 DKIVLKKPIRVDVDLKIVGAVTWV---GRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred CcEEEcCCCcCCcEEEEEEEEEEe---cCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcC
Confidence 478899999999999999999875 33 223333332211 01 22368899999999976
No 79
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=51.38 E-value=97 Score=25.79 Aligned_cols=55 Identities=9% Similarity=0.193 Sum_probs=33.3
Q ss_pred cEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEEEEEeccC
Q 027671 97 QQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAG 158 (220)
Q Consensus 97 eq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st~~~Rg~g 158 (220)
.-.+.|.+|..++ .+++++++.. .|| .+-.++.+++. +|.++++...++..+..+
T Consensus 38 s~~~~fl~p~~~~-~~~~~v~~~r---~Gr-~~~~~~v~~~q--~~~~~~~a~~~f~~~~~~ 92 (255)
T PF13622_consen 38 SLHVYFLRPVPPG-PVEYRVEVLR---DGR-SFSTRQVELSQ--DGKVVATATASFGRPEPG 92 (255)
T ss_dssp EEEEEESS--BSC-EEEEEEEEEE---ESS-SEEEEEEEEEE--TTEEEEEEEEEEE--TTT
T ss_pred EEEeEeccccccC-CEEEEEEEee---CCC-cEEEEEEEEEE--CCcCEEEEEEEEccCcCC
Confidence 4568899999999 8887776653 333 33334445444 688888887776655443
No 80
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=43.68 E-value=1.3e+02 Score=23.49 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=33.9
Q ss_pred CCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcC-CceEEEEEEEEE-ECCCCcEEEEEEE
Q 027671 87 QHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKG-KAAILEIETKSY-NAESGELLCMNRM 150 (220)
Q Consensus 87 ~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkg-kG~~v~~~~~~~-~~~~Ge~V~~~~s 150 (220)
..+-..+ =..++|=||||+...+-|-...+- ....+ ||. ++.+++ + ++|++|++..+
T Consensus 70 ~~~~~~v-SlDHs~wFHrpfr~ddWlLY~~~s--p~A~~~Rgl---~~G~~f~~-q~G~Lvas~~Q 128 (131)
T PF02551_consen 70 GFPKFQV-SLDHSMWFHRPFRADDWLLYAIES--PSASGGRGL---VRGRFFDT-QDGELVASVVQ 128 (131)
T ss_dssp CCCCEEE-EEEEEEEE-S--BTTS-EEEEEEE--EEEETTEEE---EEECCEEE-CTTEEEEEEEE
T ss_pred cccccEE-ecceeEEEcCCCCCCCCEEEEEEc--CccccCccc---ccCceEec-CCCCEEEEEec
Confidence 3344455 778999999999999987765443 33333 342 234455 4 58999998754
No 81
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=42.30 E-value=1.5e+02 Score=25.31 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=31.2
Q ss_pred cEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEE
Q 027671 97 QQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 151 (220)
Q Consensus 97 eq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st 151 (220)
+-.|.|.+.+..|+++.+...+. .......+.+...+.++ +|+.+|..++.
T Consensus 208 ~i~I~y~~E~~~gd~i~~~~~~~---~~~~~~~~~~~h~i~~~-~g~~~~~~~~~ 258 (261)
T PF01643_consen 208 SIDINYKKEIRYGDTITSYTEVE---KDEEEDGLSTLHEIRNE-DGEEVARARTE 258 (261)
T ss_dssp EEEEEE-S--BTT-EEEEEEEEE---EECCTTEEEEEEEEECT--TCEEEEEEEE
T ss_pred EEEEEEccccCCCCEEEEEEEEc---ccccCCceEEEEEEEcC-CCceEEEEEEE
Confidence 56789999999999999887776 23333333444455663 49999888654
No 82
>PLN02868 acyl-CoA thioesterase family protein
Probab=42.17 E-value=79 Score=28.94 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=38.8
Q ss_pred ceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEECCCCcEEEEEEEE
Q 027671 92 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 151 (220)
Q Consensus 92 ~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~~~Ge~V~~~~st 151 (220)
.+.=..+.|.||+|+...+-+-.+.+.... +.| --..+.++++ .+|++|++..+-
T Consensus 356 ~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a---~~g-r~~~~g~l~~-~~G~LvAs~~Qe 410 (413)
T PLN02868 356 AALSLDHSMWFHRPFRADDWLLFVIVSPAA---HNG-RGFATGHMFN-RKGELVVSLTQE 410 (413)
T ss_pred EEEEcceeEEEecCCCCCceEEEEEECCcc---CCC-cceEEEEEEC-CCCCEEEEEEee
Confidence 355667899999999888887777665543 122 2223477888 599999998764
No 83
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=36.67 E-value=1.7e+02 Score=23.80 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCeEEEEEEEeEEEEc-CCce--EEEEEEEEEECCCCcEEEEEEEE
Q 027671 109 SASIRNEACIAGLHDK-GKAA--ILEIETKSYNAESGELLCMNRMT 151 (220)
Q Consensus 109 g~~l~~~~~v~~v~dk-gkG~--~v~~~~~~~~~~~Ge~V~~~~st 151 (220)
|..+.+..+|.....+ +++. .+.+.-++.|-++|+.||.....
T Consensus 141 gADy~L~G~I~~~~~~~~~~~~~~~~~~l~Lvd~~TG~ivWs~~~~ 186 (189)
T TIGR02722 141 GADYSLYGKISSIVKSDGSRKLVYYKFTMQLMDLKTGLIVWSDEKP 186 (189)
T ss_pred CCCEEEEEEEEEEEeecCCCceEEEEEEEEEEEcCcceEEEecceE
Confidence 4578888999998877 4443 47777888887899999997654
No 84
>PF13036 DUF3897: Protein of unknown function (DUF3897)
Probab=33.44 E-value=1.7e+02 Score=23.34 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCeEEEEEEEeEEEEcCCc---eEEEEEEEEEECCCCcEEEEEE
Q 027671 109 SASIRNEACIAGLHDKGKA---AILEIETKSYNAESGELLCMNR 149 (220)
Q Consensus 109 g~~l~~~~~v~~v~dkgkG---~~v~~~~~~~~~~~Ge~V~~~~ 149 (220)
|..+.+..+|....++.++ ....+.-++.|-++|+.||...
T Consensus 134 gady~L~G~I~~~~~~~~~~~~~~y~~~l~L~d~~tg~ivW~~~ 177 (180)
T PF13036_consen 134 GADYMLSGKISSIVKRNGGKQQVYYQFTLQLVDLETGEIVWSGE 177 (180)
T ss_pred CCCEEEEEEEEEeEeecCCceeEEEEEEEEEEEcCCCcEEeccc
Confidence 4578899999999776433 3466777778878999999864
No 85
>COG5496 Predicted thioesterase [General function prediction only]
Probab=28.29 E-value=2.9e+02 Score=21.50 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=54.5
Q ss_pred CccccceehhhhccCcCCCCCCCCCCCCCCCCceeeecEEEEEeccCCCCCeEEEEEEEeEEEEcCCceEEEEEEEEEEC
Q 027671 60 FIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNA 139 (220)
Q Consensus 60 ~~~apPTf~~vl~~~~~~~~~~~~p~~~~d~~~lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dkgkG~~v~~~~~~~~~ 139 (220)
++.++-|...+.-+.... ..+..|-++.+. .-|=.|-.+.-..|+++|.++++.+++..+.- |..-+.++.. +
T Consensus 27 ~~~VlATp~mi~~~E~a~-~el~~~~Ld~g~-ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~G--r~v~f~i~a~--~- 99 (130)
T COG5496 27 MLNVLATPAMIGFMENAS-YELLQPYLDNGE-TTVGTEVLVRHLAATPPGLTVTIGARLEKVEG--RKVKFRIIAM--E- 99 (130)
T ss_pred ccceeehHHHHHHHHHHH-HHHHHhhCcCCc-ceeeEEEEeeeccCCCCCCeEEEEEEEEEEec--cEEEEEEEEe--e-
Confidence 345555555555443211 112234444432 33555677778889999999999999998864 3444444433 3
Q ss_pred CCCcEEEEEEEEEEEec
Q 027671 140 ESGELLCMNRMTAFLRG 156 (220)
Q Consensus 140 ~~Ge~V~~~~st~~~Rg 156 (220)
.|+++-+...+-++-.
T Consensus 100 -~~~~Ig~g~h~R~iv~ 115 (130)
T COG5496 100 -GGDKIGEGTHTRVIVP 115 (130)
T ss_pred -CCcEEeeeEEEEEEec
Confidence 6888888877766643
No 86
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=28.21 E-value=1.3e+02 Score=21.89 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCCCeEEEEEEEeEEEEcCCceEEEE
Q 027671 107 PSSASIRNEACIAGLHDKGKAAILEI 132 (220)
Q Consensus 107 ~~g~~l~~~~~v~~v~dkgkG~~v~~ 132 (220)
..|.++++..+|..+++.|+-+++++
T Consensus 10 ~~g~~V~v~Gwv~~~R~~g~~~Fi~L 35 (108)
T cd04316 10 LDGEEVTVAGWVHEIRDLGGIKFVIL 35 (108)
T ss_pred hCCCEEEEEEEEEeeeccCCeEEEEE
Confidence 35789999999999999987556555
No 87
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=23.03 E-value=3.2e+02 Score=20.32 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=39.0
Q ss_pred eeeecEEEEEeccCCCCCeEEEEEEEeEEEEc-CCceEEEEEEEEEECCCCcEEEEEEEEE
Q 027671 93 LLHGQQYMELYKPFPSSASIRNEACIAGLHDK-GKAAILEIETKSYNAESGELLCMNRMTA 152 (220)
Q Consensus 93 lvHgeq~i~~~rPl~~g~~l~~~~~v~~v~dk-gkG~~v~~~~~~~~~~~Ge~V~~~~st~ 152 (220)
.+=-+-.++|.+++...-.+.++.++..-..+ ++..-..++.+++. +|+++++...+.
T Consensus 72 ~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q--~g~~~a~~~~~~ 130 (132)
T PF03756_consen 72 FVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQ--GGRVVATASMTF 130 (132)
T ss_pred EEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEE--CCEEEEEEEEEE
Confidence 44447888999988666677777766654444 23344566666654 799999987764
No 88
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=20.90 E-value=1.7e+02 Score=21.26 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=16.7
Q ss_pred eEEEEEEEeEEEEcCCceEEEE
Q 027671 111 SIRNEACIAGLHDKGKAAILEI 132 (220)
Q Consensus 111 ~l~~~~~v~~v~dkgkG~~v~~ 132 (220)
++++..+|.+++..|+-+++++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~l 22 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADL 22 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEE
Confidence 3678889999999887665555
No 89
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=20.74 E-value=44 Score=27.20 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=12.3
Q ss_pred HHHHhh-cCCCcccCcc
Q 027671 200 ACSIKF-HYCWNSKFFI 215 (220)
Q Consensus 200 a~lYRl-SGD~NPiH~~ 215 (220)
.+|-|. .||||.||=+
T Consensus 64 plllrY~~gdyn~LHqd 80 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQD 80 (173)
T ss_pred hhhheeCCCCccccccC
Confidence 456666 8999999954
Done!