Query 027673
Match_columns 220
No_of_seqs 111 out of 133
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 13:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3227 Calcium-responsive tra 100.0 2.8E-43 6E-48 306.4 16.6 141 1-141 1-160 (231)
2 PF05030 SSXT: SSXT protein (N 100.0 6.7E-29 1.5E-33 182.2 7.6 59 18-76 4-62 (65)
3 KOG3973 Uncharacterized conser 76.9 6.1 0.00013 38.6 5.9 50 123-176 385-434 (465)
4 PF07011 DUF1313: Protein of u 72.0 3.3 7.1E-05 32.8 2.3 25 21-45 14-38 (87)
5 PF10366 Vps39_1: Vacuolar sor 55.2 26 0.00056 27.5 4.6 46 16-61 23-68 (108)
6 PF13879 KIAA1430: KIAA1430 ho 52.2 16 0.00035 26.8 2.9 33 19-51 32-64 (98)
7 PF14327 CSTF2_hinge: Hinge do 49.8 8.7 0.00019 29.0 1.1 24 21-44 45-68 (84)
8 smart00751 BSD domain in trans 46.7 66 0.0014 21.8 5.0 41 19-59 6-48 (51)
9 PF06570 DUF1129: Protein of u 46.2 27 0.00058 29.7 3.6 30 18-50 20-49 (206)
10 PF14278 TetR_C_8: Transcripti 40.4 64 0.0014 21.5 4.2 29 23-51 5-33 (77)
11 PRK06342 transcription elongat 40.0 1.3E+02 0.0028 25.4 6.7 54 16-69 27-80 (160)
12 PF11577 NEMO: NF-kappa-B esse 38.6 67 0.0014 24.1 4.3 40 20-59 3-44 (68)
13 PF14612 Ino80_Iec3: IEC3 subu 36.0 36 0.00078 31.1 3.0 32 23-54 34-65 (232)
14 COG4858 Uncharacterized membra 30.5 49 0.0011 30.1 2.9 26 19-47 35-60 (226)
15 PRK09109 motC flagellar motor 29.9 72 0.0016 28.4 3.8 25 50-74 131-155 (246)
16 PF09435 DUF2015: Fungal prote 27.9 76 0.0016 26.7 3.4 37 24-61 77-116 (128)
17 cd08064 MPN_eIF3f Mpr1p, Pad1p 26.1 1.3E+02 0.0028 26.7 4.7 10 62-71 248-257 (265)
18 PF07739 TipAS: TipAS antibiot 23.4 1.3E+02 0.0027 22.4 3.6 53 18-70 23-75 (118)
19 PF11186 DUF2972: Protein of u 23.4 1.4E+02 0.0031 25.8 4.4 34 19-67 143-176 (199)
20 PF09793 AD: Anticodon-binding 22.3 3.2E+02 0.0069 20.7 5.7 46 16-61 1-46 (91)
21 KOG1538 Uncharacterized conser 21.3 1.2E+02 0.0027 32.4 4.2 47 26-72 811-857 (1081)
22 PF03663 Glyco_hydro_76: Glyco 21.3 1.6E+02 0.0035 27.2 4.6 45 27-71 241-300 (370)
23 KOG1596 Fibrillarin and relate 20.2 4.2E+02 0.0091 25.4 7.0 7 135-141 1-7 (317)
No 1
>KOG3227 consensus Calcium-responsive transcription coactivator [Transcription]
Probab=100.00 E-value=2.8e-43 Score=306.37 Aligned_cols=141 Identities=43% Similarity=0.552 Sum_probs=114.2
Q ss_pred CcccccccccccccCCCCCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhccCCCC-----
Q 027673 1 MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQP----- 75 (220)
Q Consensus 1 mqq~~~qm~pmm~~~~p~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADsqp~p----- 75 (220)
||.+.+.++.++.-+.+.+||+|+||||||||++||+||+|||||||+.||++||++|||||||||+|||++|++
T Consensus 1 mq~p~s~~~~~~~~~g~~~vt~~~IQk~LdEN~~LI~~I~e~Qn~Gk~~EC~qyq~~LhrNL~YLA~iAD~qp~pps~~~ 80 (231)
T KOG3227|consen 1 MQSPMSVAFVAPRQRGKGEVTSEQIQKMLDENKHLIQCIVESQNKGKLSECAQYQALLHRNLVYLATIADSQPTPPSLLP 80 (231)
T ss_pred CCCCccccccccccCCCCccCHHHHHHHHHhhhHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHhhcCCCCCcCCC
Confidence 566777777767777889999999999999999999999999999999999999999999999999999999775
Q ss_pred --CCCCCCCCCCCCCCCCCc---cccccccCCCC---cccccccccccccccc-hhhH-----HHHHHHHhhccccccCC
Q 027673 76 --PSVHAQFSSGGIMQPGAH---YMQHQQSQPMT---PQSLMAARSSMVYSQQ-QFSV-----LQQQQALHGQLGMSSGG 141 (220)
Q Consensus 76 --pt~~~q~~p~~~~Q~g~~---~mq~~q~~~m~---~q~~~~~r~~~~~~~q-~~~~-----~qqQq~~~~q~gm~~~g 141 (220)
|++.+.+.|.+..+++++ .|++.++-.|. |+++|++|.+++|.++ ++++ +++|+++++++++||+|
T Consensus 81 ~pptq~~~~gpg~~~~~q~pp~~~mQq~q~d~m~~glPpg~~~qrq~~q~~~~~q~q~pqQq~~~hQqa~~~~~g~~p~G 160 (231)
T KOG3227|consen 81 APPTQNMGMGPGPGSQSQPPPQYFMQQHQSDGMVGGLPPGIFAQRQPLQQGQPQQQQQPQQQQQQHQQAMTSHSGIRPMG 160 (231)
T ss_pred CCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccchhccCcccccchhhhhhHHHHHHHHhhccCccc
Confidence 445566777776665544 35555554443 6789999999999544 3322 34667899999999966
No 2
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=99.95 E-value=6.7e-29 Score=182.19 Aligned_cols=59 Identities=49% Similarity=0.701 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 027673 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPP 76 (220)
Q Consensus 18 ~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADsqp~pp 76 (220)
..+|+++||||||||++||+||+||||+||+.||++||++|||||||||+|||+++...
T Consensus 4 ~~~~~~~IQk~LdEN~~LI~~I~e~qn~Gr~~Ec~qyq~~LhrNL~yLA~iAD~~~~~~ 62 (65)
T PF05030_consen 4 AQITTEQIQKMLDENDQLIQCIQEYQNKGRAQECVQYQQILHRNLVYLATIADASQNSQ 62 (65)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 57999999999999999999999999999999999999999999999999999997654
No 3
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=76.94 E-value=6.1 Score=38.60 Aligned_cols=50 Identities=32% Similarity=0.300 Sum_probs=23.3
Q ss_pred hHHHHHHHHhhccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 027673 123 SVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGE 176 (220)
Q Consensus 123 ~~~qqQq~~~~q~gm~~~g~~g~h~~~~e~~~~ggng~~~~gg~~d~~r~~~~~ 176 (220)
++++|||.-|.--+.--.+.++...-+ ...|+|-+++|=-+|.+|++.++
T Consensus 385 qqp~~~~~~hqn~~ye~~~~~~~~~qq----~~sgsg~qg~g~~~~~~rdggg~ 434 (465)
T KOG3973|consen 385 QQPQQQQQQHQNQSYEQRDRSDRNDQQ----WISGSGVQGTGWNPQGGRDGGGR 434 (465)
T ss_pred cCchhhhhcccccccccCCcCCccccc----eeecccccCCccCCCCCCCCCCC
Confidence 344555554544444333444443322 12234445555556666665544
No 4
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=71.99 E-value=3.3 Score=32.77 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.3
Q ss_pred CHHHHHHHHhhhHHHHHHHHHhhcC
Q 027673 21 TTDHIQQYLDENKSLILKIVESQNS 45 (220)
Q Consensus 21 t~e~IQk~LDEN~qLI~~I~E~QNk 45 (220)
+..++|.+||.|.-||..|-+++..
T Consensus 14 sF~qVQ~iLDqNR~LI~eINqNHeS 38 (87)
T PF07011_consen 14 SFVQVQSILDQNRLLINEINQNHES 38 (87)
T ss_pred HHHHHHHHHHHhHHHHHHHhhcccc
Confidence 4568999999999999999877653
No 5
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.20 E-value=26 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHH
Q 027673 16 YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRN 61 (220)
Q Consensus 16 ~p~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRN 61 (220)
-|..+..+.+.+.|.|++..-.-|.=|+.+|+..+|++.-.+|..+
T Consensus 23 ~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 23 LPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred cCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 3688999999999999999988888899999999999877777654
No 6
>PF13879 KIAA1430: KIAA1430 homologue
Probab=52.16 E-value=16 Score=26.76 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhh
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGKLSEC 51 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec 51 (220)
.++.+.+.++..||..|+..|.+.++......|
T Consensus 32 ~~~~er~~~I~reN~~LL~ki~~I~~~~~~~~~ 64 (98)
T PF13879_consen 32 QFEEERQREIERENQILLRKIMEIMRKPGSIDC 64 (98)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 345577788889999999999998887644443
No 7
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=49.81 E-value=8.7 Score=28.99 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=16.9
Q ss_pred CHHHHHHHHhhhHHHHHHHHHhhc
Q 027673 21 TTDHIQQYLDENKSLILKIVESQN 44 (220)
Q Consensus 21 t~e~IQk~LDEN~qLI~~I~E~QN 44 (220)
+++..+++|.+|.+|.++|+..+-
T Consensus 45 ~p~~ar~lL~~nPqLa~Al~qa~l 68 (84)
T PF14327_consen 45 NPEQARQLLQQNPQLAYALFQALL 68 (84)
T ss_dssp ---HHHHHHHS-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHCcHHHHHHHHHHH
Confidence 458889999999999999886654
No 8
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=46.73 E-value=66 Score=21.82 Aligned_cols=41 Identities=20% Similarity=-0.035 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHH--HHHHHH
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAE--NQARLQ 59 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~q--YQq~Lh 59 (220)
..+++.|.++|+||..|-..--+.-.+--..|..+ |-.+++
T Consensus 6 ~~~~~~i~~il~~~p~l~~~~~~lVP~~~se~~FW~ryF~~~~ 48 (51)
T smart00751 6 DAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLY 48 (51)
T ss_pred cCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 56789999999999998777666554444444443 544443
No 9
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=46.25 E-value=27 Score=29.69 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhh
Q 027673 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSE 50 (220)
Q Consensus 18 ~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~E 50 (220)
..++.+++.++|+| ++..|+|-|++|+..+
T Consensus 20 ~~~~e~~~e~~L~e---il~~LleaQk~G~tA~ 49 (206)
T PF06570_consen 20 SGVSEEEIEELLEE---ILPHLLEAQKKGKTAR 49 (206)
T ss_pred cCCCHHHHHHHHHH---HHHHHHHHHhCCCcHH
Confidence 46788999999976 7888999999998764
No 10
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=40.35 E-value=64 Score=21.52 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=22.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCCchhhh
Q 027673 23 DHIQQYLDENKSLILKIVESQNSGKLSEC 51 (220)
Q Consensus 23 e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec 51 (220)
+.|-.++.||..++++++..+.-..+.+.
T Consensus 5 ~~i~~~i~~n~~~~~~ll~~~~~~~f~~~ 33 (77)
T PF14278_consen 5 TEIFEYIYENRDFYKILLSPNGDPNFQER 33 (77)
T ss_pred HHHHHHHHHhHHHHHHHHCCCCCHHHHHH
Confidence 46778999999999999987765555443
No 11
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.97 E-value=1.3e+02 Score=25.39 Aligned_cols=54 Identities=28% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhh
Q 027673 16 YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIA 69 (220)
Q Consensus 16 ~p~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIA 69 (220)
.+..+|.+-.+++-+|=.+|...|.+--..|.+.|+..-|..+.+=+-||-.+-
T Consensus 27 ~~~~lT~~G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L 80 (160)
T PRK06342 27 HPNLVTEAGLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARR 80 (160)
T ss_pred CCceECHHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999998778888888888886543
No 12
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=38.63 E-value=67 Score=24.08 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=25.7
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHhhc--CCchhhhHHHHHHHH
Q 027673 20 VTTDHIQQYLDENKSLILKIVESQN--SGKLSECAENQARLQ 59 (220)
Q Consensus 20 it~e~IQk~LDEN~qLI~~I~E~QN--kGk~~Ec~qYQq~Lh 59 (220)
-+.++++.+|.||..|=.+|--+.- +.|+.+.+.+|..-.
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~ 44 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQK 44 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999877753322 567777666665443
No 13
>PF14612 Ino80_Iec3: IEC3 subunit of the Ino80 complex, chromatin re-modelling
Probab=35.95 E-value=36 Score=31.06 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCCchhhhHHH
Q 027673 23 DHIQQYLDENKSLILKIVESQNSGKLSECAEN 54 (220)
Q Consensus 23 e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qY 54 (220)
+.+.++-+||++|...++|..|.-.+.--.+|
T Consensus 34 ~~~kRl~~end~LLdlLld~N~s~~ip~~~R~ 65 (232)
T PF14612_consen 34 DTSKRLAEENDQLLDLLLDLNNSPQIPPDKRY 65 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcCCHhhcc
Confidence 56788999999999999999988877665555
No 14
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.53 E-value=49 Score=30.10 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCc
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGK 47 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk 47 (220)
.-+.|+|+.+|+| .|-.|+|.|.||-
T Consensus 35 gksdeeik~Il~e---~ipqIleeQkkGi 60 (226)
T COG4858 35 GKSDEEIKIILEE---MIPQILEEQKKGI 60 (226)
T ss_pred CCCHHHHHHHHHH---HHHHHHHhhhccc
Confidence 3577899999987 7889999999993
No 15
>PRK09109 motC flagellar motor protein; Reviewed
Probab=29.90 E-value=72 Score=28.37 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCC
Q 027673 50 ECAENQARLQRNLMYLAAIADAQPQ 74 (220)
Q Consensus 50 Ec~qYQq~LhRNLvYLAtIADsqp~ 74 (220)
|...+..++++++-+|.+||+.-|.
T Consensus 131 ~i~~~~~r~~~~~~~l~~~a~~AP~ 155 (246)
T PRK09109 131 EIDTQEHRDLQAAKVFESMGGYAPT 155 (246)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHhHH
Confidence 4556889999999999999998654
No 16
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=27.93 E-value=76 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=28.1
Q ss_pred HHHHHHhhh-HHHHHHHHHhhcCCchhhhHH--HHHHHHHH
Q 027673 24 HIQQYLDEN-KSLILKIVESQNSGKLSECAE--NQARLQRN 61 (220)
Q Consensus 24 ~IQk~LDEN-~qLI~~I~E~QNkGk~~Ec~q--YQq~LhRN 61 (220)
.-..-|||+ +.=|+.|++-++.. ++|+.. -++++.+|
T Consensus 77 D~R~GLD~~ak~EI~~IM~~~~v~-FDeARliy~~~~f~~N 116 (128)
T PF09435_consen 77 DSRAGLDDAAKREIRRIMKRRRVN-FDEARLIYTERRFKKN 116 (128)
T ss_pred CcccCcCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHc
Confidence 334558887 78899999999887 889865 45667766
No 17
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=26.06 E-value=1.3e+02 Score=26.70 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=7.2
Q ss_pred HHHHHHhhcc
Q 027673 62 LMYLAAIADA 71 (220)
Q Consensus 62 LvYLAtIADs 71 (220)
.+|||+|...
T Consensus 248 v~YLs~l~k~ 257 (265)
T cd08064 248 VTYLSNLTKT 257 (265)
T ss_pred HHHHHHHHHH
Confidence 4688888754
No 18
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=23.43 E-value=1.3e+02 Score=22.35 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhc
Q 027673 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIAD 70 (220)
Q Consensus 18 ~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIAD 70 (220)
..++.+..+++-+|-..|+..|..+.+.|.-.++..-|.+..|=.-+|..+.+
T Consensus 23 ~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~~~ 75 (118)
T PF07739_consen 23 ASLSKEEWQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELINQFTG 75 (118)
T ss_dssp ----------TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHSS-
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 45778889999999999999999999999888887777777766666655544
No 19
>PF11186 DUF2972: Protein of unknown function (DUF2972); InterPro: IPR021353 Some members in this family of proteins with unknown function are annotated as sugar transferase proteins, however this cannot be confirmed.
Probab=23.42 E-value=1.4e+02 Score=25.77 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHH
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAA 67 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAt 67 (220)
.++.+.|-.+|.+|+.| |..+..+|-+.|+|+-.
T Consensus 143 ~i~E~diL~ylk~nk~l---------------~~k~K~ilD~EL~~IKq 176 (199)
T PF11186_consen 143 LIKEKDILEYLKNNKDL---------------RRKFKKILDKELQHIKQ 176 (199)
T ss_pred cCCHHHHHHHHHhCHHH---------------HHHHHHHHHHHHHHHHH
Confidence 35666666677777666 88899999999998753
No 20
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=22.28 E-value=3.2e+02 Score=20.68 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHH
Q 027673 16 YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRN 61 (220)
Q Consensus 16 ~p~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRN 61 (220)
+|..++-+.|++-|+++-..-..-...-+.|-..|+-.....|.|=
T Consensus 1 ~~~~l~i~~l~~r~~~ai~~~~~~~~~~~~~vs~egQ~lF~~l~Kt 46 (91)
T PF09793_consen 1 PPPPLDIERLQKRLRKAIEEAKRKLSSIGPGVSPEGQKLFDALSKT 46 (91)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHhh
Confidence 5788999999999999877777777777889888988876666653
No 21
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.31 E-value=1.2e+02 Score=32.44 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhccC
Q 027673 26 QQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ 72 (220)
Q Consensus 26 Qk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADsq 72 (220)
-+.|-||++.|.+--.|-..||..|+++.-..|-.|-|-=-..+|+.
T Consensus 811 aqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~ 857 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAA 857 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccch
Confidence 46899999999999999999999999999999999988877777764
No 22
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=21.28 E-value=1.6e+02 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHhhhHHHHHHHHHh-hcCC--------------chhhhHHHHHHHHHHHHHHHHhhcc
Q 027673 27 QYLDENKSLILKIVES-QNSG--------------KLSECAENQARLQRNLMYLAAIADA 71 (220)
Q Consensus 27 k~LDEN~qLI~~I~E~-QNkG--------------k~~Ec~qYQq~LhRNLvYLAtIADs 71 (220)
++|++=..|+..++++ -..+ --.+...|..+|.|+|.+|+.+++.
T Consensus 241 ~yl~~A~~la~~~~~~~~~~~~gil~e~~ce~~~~~~~d~~~Fkgi~~r~L~~l~~~~~~ 300 (370)
T PF03663_consen 241 TYLDRAEKLADAAINHFFDNGDGILTEEACEPSGTCDGDQPLFKGIFARYLADLAQVAPD 300 (370)
T ss_dssp HHHHHHHHHHHHHHHHHEETT--EE----------SSSGGGGHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeeeeccccccCcCcCCccHHHHHHHHHHHHHHHHHCcc
Confidence 8999999999998876 2222 1224566999999999999999963
No 23
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=20.17 E-value=4.2e+02 Score=25.36 Aligned_cols=7 Identities=29% Similarity=0.715 Sum_probs=3.4
Q ss_pred cccccCC
Q 027673 135 LGMSSGG 141 (220)
Q Consensus 135 ~gm~~~g 141 (220)
|+|.|++
T Consensus 1 ~~~~~~~ 7 (317)
T KOG1596|consen 1 MSMKPGS 7 (317)
T ss_pred CCCCCCC
Confidence 3455544
Done!