Query 027673
Match_columns 220
No_of_seqs 111 out of 133
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 23:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3brv_B NF-kappa-B essential mo 75.0 2.9 0.0001 30.8 3.7 39 19-57 4-44 (70)
2 1b79_A DNAB helicase; hexamer, 56.9 9.1 0.00031 28.8 3.4 46 30-75 53-106 (119)
3 2l9b_A MRNA 3'-END-processing 46.0 6.7 0.00023 30.9 1.1 40 21-60 68-107 (109)
4 2r5u_A Replicative DNA helicas 34.9 39 0.0013 27.3 4.1 44 30-73 63-114 (200)
5 3n71_A Histone lysine methyltr 24.7 1.2E+02 0.0041 27.7 5.9 41 19-59 296-337 (490)
6 1dow_A Alpha-catenin; four-hel 20.9 2.3E+02 0.0078 23.7 6.4 49 23-71 89-137 (205)
7 1xkm_B Distinctin chain B; por 20.2 65 0.0022 19.5 2.1 15 49-63 7-21 (26)
8 2q6t_A DNAB replication FORK h 19.8 1.2E+02 0.004 26.8 4.6 45 30-74 43-95 (444)
9 3u6r_H Antibody 1:7 (heavy cha 18.5 21 0.00073 27.4 -0.4 25 183-207 121-145 (149)
10 2dii_A TFIIH basal transcripti 17.9 98 0.0033 22.0 3.0 13 23-35 17-29 (61)
No 1
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=75.05 E-value=2.9 Score=30.84 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhc--CCchhhhHHHHHH
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQN--SGKLSECAENQAR 57 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QN--kGk~~Ec~qYQq~ 57 (220)
..++|++|++|.||..|=.+|--+.. ++|+.|..-+|.+
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqek 44 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQAS 44 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999888753332 5677766555444
No 2
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=56.87 E-value=9.1 Score=28.84 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHhhcCCchhhhHHHHHHHHHH--------HHHHHHhhccCCCC
Q 027673 30 DENKSLILKIVESQNSGKLSECAENQARLQRN--------LMYLAAIADAQPQP 75 (220)
Q Consensus 30 DEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRN--------LvYLAtIADsqp~p 75 (220)
+.++.+-++|.+.-++|+--+.+-....|.++ +.||+.|++..|..
T Consensus 53 ~~H~~If~ai~~L~~~g~piD~vtv~~~L~~~~~l~~~GG~~yL~~L~~~~ps~ 106 (119)
T 1b79_A 53 RPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTTHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccCchhhcCcHHHHHHHHHhCCCH
Confidence 34777888899999999888887777777652 57999999987654
No 3
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=45.95 E-value=6.7 Score=30.87 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=25.9
Q ss_pred CHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHH
Q 027673 21 TTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60 (220)
Q Consensus 21 t~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhR 60 (220)
+++...++|++|.||-++|++..=.=++-++-..+++||+
T Consensus 68 nP~~a~~LL~q~PQLAyAl~QalL~m~ivd~~~l~~ll~~ 107 (109)
T 2l9b_A 68 HPEDAASLLELCPQLSFVTAELLLTNGICKVDDLIPLASR 107 (109)
T ss_dssp CHHHHHHHHHHCHHHHHHHHHHHHHHTSSCHHHHTTTC--
T ss_pred CHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHHHhcc
Confidence 5677788888999998888876654445444444444443
No 4
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=34.87 E-value=39 Score=27.30 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHhhcCCchhhhHHHHHHHHHH--H------HHHHHhhccCC
Q 027673 30 DENKSLILKIVESQNSGKLSECAENQARLQRN--L------MYLAAIADAQP 73 (220)
Q Consensus 30 DEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRN--L------vYLAtIADsqp 73 (220)
+.++.+-.+|.+.-++|+--+.+-.-..|.++ | -||+.|++..|
T Consensus 63 ~~H~~If~ai~~L~~~g~piD~vtv~~~L~~~~~l~~vGG~~yL~~L~~~~~ 114 (200)
T 2r5u_A 63 PAHQNVYDAILDLYGRGEPADAVTVAAELDRRGLLRRIGGAPYLHTLISTVP 114 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTCHHHHTCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCchhhcCcHHHHHHHHHhCC
Confidence 34677778888888999888887777777653 3 39999998765
No 5
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=24.75 E-value=1.2e+02 Score=27.66 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHH-HHHHHH
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAE-NQARLQ 59 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~q-YQq~Lh 59 (220)
.++.+.|..+|++=..+|..+.++.+.||++|+.. |...|.
T Consensus 296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~ 337 (490)
T 3n71_A 296 KPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLE 337 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999987 666654
No 6
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=20.95 E-value=2.3e+02 Score=23.73 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhcc
Q 027673 23 DHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADA 71 (220)
Q Consensus 23 e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADs 71 (220)
..|.|+|..-+.+..++-...+.....|.+++-+.|-..++-|+.+++.
T Consensus 89 ~~Vrkil~~~~~v~~~L~~le~~~s~~el~~~f~~f~~~m~~l~~l~~~ 137 (205)
T 1dow_A 89 ADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAK 137 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999998865
No 7
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.23 E-value=65 Score=19.51 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHH
Q 027673 49 SECAENQARLQRNLM 63 (220)
Q Consensus 49 ~Ec~qYQq~LhRNLv 63 (220)
-|+..|-..|||-|-
T Consensus 7 iearkyleqlhrklk 21 (26)
T 1xkm_B 7 IEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 478889999999873
No 8
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=19.80 E-value=1.2e+02 Score=26.80 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHhhcCCchhhhHHHHHHHHHH--------HHHHHHhhccCCC
Q 027673 30 DENKSLILKIVESQNSGKLSECAENQARLQRN--------LMYLAAIADAQPQ 74 (220)
Q Consensus 30 DEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRN--------LvYLAtIADsqp~ 74 (220)
+.|+.+..+|.+.-++|+.-+.+-....|.++ +-||+.|++..|.
T Consensus 43 ~~h~~If~ai~~l~~~~~~iD~~tv~~~L~~~~~l~~~gg~~yl~~L~~~~~s 95 (444)
T 2q6t_A 43 EAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPT 95 (444)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTTTTTTHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCChhhcCcHHHHHHHHHcCCC
Confidence 56778889999999999887877777777654 3499999997653
No 9
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=18.51 E-value=21 Score=27.36 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 027673 183 MGSKHDIGSSGSAEGRGGSSGSQDG 207 (220)
Q Consensus 183 ~g~k~d~g~~~~~dgrgg~~~g~~~ 207 (220)
.|+|..+..+.++.|+|++++|+-+
T Consensus 121 ~GT~L~V~~~~~~~~~~~~~~~~~~ 145 (149)
T 3u6r_H 121 QGTLVTVSSGTGGSGGGGSGGGGSG 145 (149)
T ss_dssp CCEEEEEC-----------------
T ss_pred CCEEEEEEcCCCcCCCCCCCCCCCC
Confidence 3677777655566666666665533
No 10
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=17.94 E-value=98 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.0
Q ss_pred HHHHHHHhhhHHH
Q 027673 23 DHIQQYLDENKSL 35 (220)
Q Consensus 23 e~IQk~LDEN~qL 35 (220)
+.=.++|.||..|
T Consensus 17 e~k~rlL~eN~~L 29 (61)
T 2dii_A 17 EEKNRMLQEDPVL 29 (61)
T ss_dssp HHHHHHHHHCHHH
T ss_pred HHHHHHHHhCHHH
Confidence 3445678888877
Done!