Query 027673
Match_columns 220
No_of_seqs 111 out of 133
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 23:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b79a_ a.81.1.1 (A:) N-termin 47.7 8 0.00058 26.2 3.5 48 28-75 35-90 (102)
2 d1t01a2 a.24.9.1 (A:126-252) V 31.7 47 0.0034 24.2 5.8 49 23-71 4-52 (127)
3 d1hz4a_ a.118.8.2 (A:) Transcr 28.2 28 0.0021 24.2 3.8 38 25-62 327-365 (366)
4 d2oz6a2 b.82.3.2 (A:9-142) Cyc 28.1 34 0.0025 22.8 4.2 24 19-42 93-116 (134)
5 d1t7sa_ a.7.7.1 (A:) BAG-famil 21.9 31 0.0023 26.0 3.2 22 23-44 108-129 (129)
6 d2ebfx1 a.296.1.1 (X:575-874) 21.8 44 0.0032 28.2 4.4 46 19-64 51-96 (300)
7 d1i5za2 b.82.3.2 (A:6-137) Cat 21.6 54 0.0039 21.3 4.1 24 19-42 91-114 (132)
8 d1o5la1 b.82.3.2 (A:1-129) CRP 19.3 90 0.0065 20.0 4.9 40 19-66 88-127 (129)
9 d1r6la2 d.101.1.1 (A:152-239) 17.6 49 0.0036 21.8 3.2 28 17-44 56-83 (88)
10 d1dova_ a.24.9.1 (A:) alpha-ca 16.4 1.6E+02 0.011 22.1 6.3 49 23-71 64-112 (181)
No 1
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=47.72 E-value=8 Score=26.25 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=37.2
Q ss_pred HHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHH--------HHHHHHhhccCCCC
Q 027673 28 YLDENKSLILKIVESQNSGKLSECAENQARLQRN--------LMYLAAIADAQPQP 75 (220)
Q Consensus 28 ~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRN--------LvYLAtIADsqp~p 75 (220)
+...|+.+-++|.+.-++|+.-+-+-.-..|.++ .-||+.|++..+.+
T Consensus 35 y~~~h~~If~ai~~l~~~g~~iD~vtv~~~l~~~~~l~~igg~~yl~~L~~~~~s~ 90 (102)
T d1b79a_ 35 YTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSA 90 (102)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTTHHHHTHHHHHHHHHHHSCSS
T ss_pred chHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHCCChhhcCcHHHHHHHHHhCCCH
Confidence 3457888899999999999877776666666553 67999999987543
No 2
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=31.70 E-value=47 Score=24.22 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=44.0
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhcc
Q 027673 23 DHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADA 71 (220)
Q Consensus 23 e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADs 71 (220)
..|.|+|..-+.+...+-...+.--.+|+++|-..|-.+++=|+.+++.
T Consensus 4 ~eVrkIl~~~~~V~~~L~~~e~v~s~~dLv~~~k~f~~~m~~L~~~~~~ 52 (127)
T d1t01a2 4 AEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDE 52 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999888888888889999999999999999999998865
No 3
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=28.20 E-value=28 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHhhhHHHHHHHHHhhcCCchhhhHH-HHHHHHHHH
Q 027673 25 IQQYLDENKSLILKIVESQNSGKLSECAE-NQARLQRNL 62 (220)
Q Consensus 25 IQk~LDEN~qLI~~I~E~QNkGk~~Ec~q-YQq~LhRNL 62 (220)
|..++++...+...+-+..+++++.|..+ +-++|-|||
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~i 365 (366)
T d1hz4a_ 327 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI 365 (366)
T ss_dssp CHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Confidence 34567777888888888889999999865 444455554
No 4
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.12 E-value=34 Score=22.82 Aligned_cols=24 Identities=0% Similarity=0.234 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHh
Q 027673 19 NVTTDHIQQYLDENKSLILKIVES 42 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~ 42 (220)
.++.+.+.+++++|..+...+++.
T Consensus 93 ~i~~~~~~~~~~~~~~~~~~~~~~ 116 (134)
T d2oz6a2 93 EISYAKFRELSQQDSEILYTLGSQ 116 (134)
T ss_dssp EEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEeHHHHHHHHHHCHHHHHHHHHH
Confidence 567899999999999998888743
No 5
>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=21.91 E-value=31 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.5
Q ss_pred HHHHHHHhhhHHHHHHHHHhhc
Q 027673 23 DHIQQYLDENKSLILKIVESQN 44 (220)
Q Consensus 23 e~IQk~LDEN~qLI~~I~E~QN 44 (220)
..||.+|-+|+.|+.+|-+|.+
T Consensus 108 ~~iQ~~L~~~D~l~~~i~~~~~ 129 (129)
T d1t7sa_ 108 NGIQTLLNQNDALLRRLQEYQS 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHHHHHHHHHhcC
Confidence 4688999999999999988864
No 6
>d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=21.82 E-value=44 Score=28.25 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHH
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMY 64 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvY 64 (220)
.+..|.+.++.+=|+.+..-+.++.+.||..-..+++..|...|.|
T Consensus 51 n~~~Ek~~alfeLn~~Id~Yl~~hP~SgRN~AL~qLK~Ql~s~Lf~ 96 (300)
T d2ebfx1 51 NILDERQGLMHELMELIDLYEESQPSSERLNAFRELRTQLEKALYL 96 (300)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhh
Confidence 4556888889999999999999999999999889999999998865
No 7
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.62 E-value=54 Score=21.27 Aligned_cols=24 Identities=8% Similarity=0.397 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHh
Q 027673 19 NVTTDHIQQYLDENKSLILKIVES 42 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~ 42 (220)
.++.+.+.+++++|..+...|++.
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~ 114 (132)
T d1i5za2 91 EISYKKFRQLIQVNPDILMRLSAQ 114 (132)
T ss_dssp EEEHHHHHHHHHHCTHHHHHHHHH
T ss_pred EEcHHHHHHHHhhCHHHHHHHHHH
Confidence 567899999999999998888753
No 8
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=19.33 E-value=90 Score=19.99 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHH
Q 027673 19 NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLA 66 (220)
Q Consensus 19 ~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLA 66 (220)
.|+.+.+.+++++|..+...|+.. -...-..|-+.|..|+
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~l~~~l~~l~ 127 (129)
T d1o5la1 88 SIPKEVFLDLLMKDRELLLFFLKD--------VSEHFRVVSEKLFFLT 127 (129)
T ss_dssp EEEHHHHHHHHHHCHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHhCHHHHHHHHHH--------HHHHHHHHHHHHHHhc
Confidence 467899999999999998888743 2233344556666664
No 9
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.62 E-value=49 Score=21.80 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhhc
Q 027673 17 PNNVTTDHIQQYLDENKSLILKIVESQN 44 (220)
Q Consensus 17 p~~it~e~IQk~LDEN~qLI~~I~E~QN 44 (220)
-..+|.+.+.++|+--..-|+.|.+.|+
T Consensus 56 ~~~~sed~~~~al~~A~~~i~~i~~~Qk 83 (88)
T d1r6la2 56 GAPFRPAELNAMLELAQQGMQELFELQR 83 (88)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999998885
No 10
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.41 E-value=1.6e+02 Score=22.15 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=43.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhcc
Q 027673 23 DHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADA 71 (220)
Q Consensus 23 e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADs 71 (220)
..|.++|..-+.+..++-..-+..-++|++++-+.|-..++=|+.+++.
T Consensus 64 ~~Vr~il~~~~~v~~~l~~le~v~s~~el~~~~~~f~~~~~~L~~~~~~ 112 (181)
T d1dova_ 64 ADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAK 112 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999999999988754
Done!