Query 027674
Match_columns 220
No_of_seqs 106 out of 426
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 23:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 4.6E-43 1.6E-47 316.0 22.0 215 2-220 121-340 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 1.2E-28 4.2E-33 216.3 21.2 199 14-216 108-323 (324)
3 1i7n_A Synapsin II; synapse, p 99.9 1.9E-24 6.6E-29 192.0 17.5 149 39-216 149-308 (309)
4 2p0a_A Synapsin-3, synapsin II 99.9 8.3E-24 2.8E-28 190.4 16.9 148 40-216 167-325 (344)
5 3t7a_A Inositol pyrophosphate 99.9 1.2E-23 3.9E-28 186.0 14.1 175 13-211 106-310 (330)
6 1pk8_A RAT synapsin I; ATP bin 99.9 5.1E-23 1.8E-27 189.1 16.5 148 39-215 261-419 (422)
7 4fu0_A D-alanine--D-alanine li 99.8 4.2E-21 1.4E-25 172.2 12.0 167 13-199 148-325 (357)
8 4eg0_A D-alanine--D-alanine li 99.8 2E-20 6.8E-25 164.4 15.7 179 13-213 116-313 (317)
9 3se7_A VANA; alpha-beta struct 99.8 4.7E-20 1.6E-24 164.4 17.5 160 13-199 141-318 (346)
10 3r5x_A D-alanine--D-alanine li 99.8 5.1E-20 1.7E-24 160.1 16.4 175 13-213 106-301 (307)
11 3tqt_A D-alanine--D-alanine li 99.8 5.4E-20 1.8E-24 166.7 16.4 167 13-199 149-329 (372)
12 2fb9_A D-alanine:D-alanine lig 99.8 1.4E-19 4.8E-24 160.0 17.3 156 13-197 127-296 (322)
13 3k3p_A D-alanine--D-alanine li 99.8 5.5E-20 1.9E-24 167.3 15.0 180 14-213 171-374 (383)
14 1ehi_A LMDDL2, D-alanine:D-lac 99.8 2.9E-19 9.9E-24 161.4 17.5 166 13-196 144-326 (377)
15 3e5n_A D-alanine-D-alanine lig 99.8 7.4E-20 2.5E-24 166.3 13.6 164 13-197 168-345 (386)
16 3i12_A D-alanine-D-alanine lig 99.8 2.4E-19 8E-24 161.3 15.5 161 13-197 149-326 (364)
17 1iow_A DD-ligase, DDLB, D-ALA\ 99.8 3.2E-19 1.1E-23 154.1 15.0 160 13-196 105-280 (306)
18 3lwb_A D-alanine--D-alanine li 99.8 2.2E-19 7.5E-24 162.4 14.1 181 13-213 160-368 (373)
19 2i87_A D-alanine-D-alanine lig 99.8 3.8E-19 1.3E-23 159.3 15.6 164 13-197 138-317 (364)
20 2pvp_A D-alanine-D-alanine lig 99.8 1.4E-18 4.8E-23 157.0 18.1 173 13-212 158-345 (367)
21 1e4e_A Vancomycin/teicoplanin 99.8 1.3E-18 4.3E-23 154.6 17.0 158 13-197 141-316 (343)
22 3ln6_A Glutathione biosynthesi 99.8 1.1E-18 3.7E-23 170.9 14.0 186 13-207 493-746 (750)
23 1uc8_A LYSX, lysine biosynthes 99.8 1.5E-18 5E-23 147.7 13.0 153 13-197 97-260 (280)
24 3ln7_A Glutathione biosynthesi 99.8 1.6E-17 5.5E-22 162.6 19.1 186 13-207 498-752 (757)
25 3q2o_A Phosphoribosylaminoimid 99.6 1.7E-15 5.9E-20 136.5 13.2 154 13-195 121-283 (389)
26 1gsa_A Glutathione synthetase; 99.6 7.4E-15 2.5E-19 126.6 11.2 158 18-211 134-313 (316)
27 4dim_A Phosphoribosylglycinami 99.6 1.8E-14 6.1E-19 129.7 13.0 156 14-198 119-287 (403)
28 3aw8_A PURK, phosphoribosylami 99.6 1.3E-14 4.6E-19 129.4 12.0 154 13-196 105-268 (369)
29 3eth_A Phosphoribosylaminoimid 99.6 2.1E-14 7.1E-19 129.4 13.2 153 13-196 88-248 (355)
30 3vot_A L-amino acid ligase, BL 99.6 7E-14 2.4E-18 127.1 16.5 154 13-198 121-298 (425)
31 3orq_A N5-carboxyaminoimidazol 99.6 3.1E-14 1.1E-18 128.3 14.0 151 13-195 119-279 (377)
32 3k5i_A Phosphoribosyl-aminoimi 99.6 9E-15 3.1E-19 133.1 10.0 159 13-197 132-298 (403)
33 3ax6_A Phosphoribosylaminoimid 99.6 9.6E-14 3.3E-18 124.3 16.6 152 13-195 109-266 (380)
34 4e4t_A Phosphoribosylaminoimid 99.5 1.5E-14 5.2E-19 132.5 9.7 154 13-196 142-309 (419)
35 3df7_A Putative ATP-grAsp supe 99.5 1.1E-13 3.6E-18 121.8 13.6 131 13-194 119-252 (305)
36 2z04_A Phosphoribosylaminoimid 99.5 2.6E-14 9E-19 127.1 8.7 150 13-197 101-261 (365)
37 2dwc_A PH0318, 433AA long hypo 99.5 9.2E-14 3.1E-18 126.6 11.4 155 13-196 130-301 (433)
38 1kjq_A GART 2, phosphoribosylg 99.5 6.9E-14 2.4E-18 125.2 10.2 153 13-196 122-288 (391)
39 1vkz_A Phosphoribosylamine--gl 99.5 2.5E-13 8.7E-18 123.4 13.9 157 13-196 115-295 (412)
40 2pn1_A Carbamoylphosphate synt 99.4 4.5E-13 1.5E-17 117.2 11.5 142 14-193 124-275 (331)
41 2w70_A Biotin carboxylase; lig 99.4 9.1E-13 3.1E-17 120.5 13.6 149 14-194 125-296 (449)
42 1ulz_A Pyruvate carboxylase N- 99.4 6.6E-13 2.3E-17 121.5 12.5 152 13-194 123-295 (451)
43 3ouz_A Biotin carboxylase; str 99.4 1.1E-12 3.7E-17 120.2 13.1 150 13-193 128-299 (446)
44 2ip4_A PURD, phosphoribosylami 99.4 1.1E-12 3.8E-17 118.8 12.8 157 13-195 110-286 (417)
45 2vpq_A Acetyl-COA carboxylase; 99.4 1.4E-12 4.7E-17 119.4 12.8 152 13-194 123-296 (451)
46 2dzd_A Pyruvate carboxylase; b 99.4 1.7E-12 5.8E-17 119.2 13.2 151 13-193 129-299 (461)
47 4ffl_A PYLC; amino acid, biosy 99.4 1.1E-12 3.6E-17 116.8 11.3 119 40-193 123-247 (363)
48 2yw2_A Phosphoribosylamine--gl 99.4 1.3E-12 4.4E-17 118.5 11.9 154 13-195 111-292 (424)
49 3vmm_A Alanine-anticapsin liga 99.4 2.2E-12 7.4E-17 120.1 13.5 150 13-192 148-332 (474)
50 2r85_A PURP protein PF1517; AT 99.4 4.9E-12 1.7E-16 110.2 14.3 152 13-193 109-290 (334)
51 3jrx_A Acetyl-COA carboxylase 99.4 1.5E-12 5E-17 124.5 10.8 127 39-193 241-383 (587)
52 3glk_A Acetyl-COA carboxylase 99.4 1.6E-12 5.6E-17 123.0 10.8 128 39-194 225-368 (540)
53 3lp8_A Phosphoribosylamine-gly 99.4 1.8E-12 6.3E-17 119.3 10.6 151 14-193 133-311 (442)
54 2xcl_A Phosphoribosylamine--gl 99.4 2.8E-12 9.7E-17 116.2 11.6 154 13-195 111-292 (422)
55 3mjf_A Phosphoribosylamine--gl 99.4 2.2E-12 7.5E-17 118.4 10.5 157 13-195 116-298 (431)
56 1w96_A ACC, acetyl-coenzyme A 99.4 3.1E-12 1.1E-16 120.8 11.5 129 39-194 231-375 (554)
57 2yrx_A Phosphoribosylglycinami 99.3 3.5E-12 1.2E-16 117.0 10.7 154 13-195 132-313 (451)
58 1a9x_A Carbamoyl phosphate syn 99.3 1.5E-11 5E-16 124.5 14.9 154 13-192 137-305 (1073)
59 2qk4_A Trifunctional purine bi 99.3 7.3E-12 2.5E-16 114.8 11.3 157 13-195 137-319 (452)
60 1a9x_A Carbamoyl phosphate syn 99.3 9E-12 3.1E-16 126.0 11.3 149 14-192 684-847 (1073)
61 2qf7_A Pyruvate carboxylase pr 99.2 1.9E-11 6.4E-16 124.7 10.6 153 13-194 143-316 (1165)
62 3n6r_A Propionyl-COA carboxyla 99.2 1.1E-11 3.7E-16 120.2 8.2 152 13-194 124-296 (681)
63 3hbl_A Pyruvate carboxylase; T 99.2 4.3E-11 1.5E-15 121.9 12.9 150 13-193 127-297 (1150)
64 3u9t_A MCC alpha, methylcroton 99.2 5.6E-12 1.9E-16 122.2 5.3 152 13-193 150-321 (675)
65 3va7_A KLLA0E08119P; carboxyla 99.2 5.9E-11 2E-15 121.5 10.9 150 13-192 153-323 (1236)
66 2cqy_A Propionyl-COA carboxyla 99.0 7E-11 2.4E-15 87.0 0.3 79 11-96 15-108 (108)
67 2pbz_A Hypothetical protein; N 99.0 4.2E-09 1.4E-13 93.7 11.3 144 13-192 107-270 (320)
68 2r7k_A 5-formaminoimidazole-4- 98.9 1.2E-08 4.1E-13 92.0 11.0 147 13-192 133-316 (361)
69 3tig_A TTL protein; ATP-grAsp, 98.8 4.3E-08 1.5E-12 89.0 12.5 54 39-95 144-209 (380)
70 1wr2_A Hypothetical protein PH 98.4 1.6E-07 5.4E-12 79.3 3.2 83 12-98 29-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.9 7.7E-06 2.6E-10 74.6 4.6 84 12-99 12-109 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.7 2.2E-05 7.4E-10 71.4 4.7 84 12-99 12-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.6 5E-05 1.7E-09 69.1 4.7 84 12-99 12-124 (395)
74 2io8_A Bifunctional glutathion 93.4 0.14 4.9E-06 49.0 6.9 60 44-106 529-600 (619)
75 3mwd_A ATP-citrate synthase; A 92.7 0.23 7.7E-06 45.5 7.0 82 17-99 26-128 (425)
76 3pff_A ATP-citrate synthase; p 82.8 1.3 4.6E-05 43.7 5.2 80 19-99 28-128 (829)
77 3n6x_A Putative glutathionylsp 82.1 0.98 3.4E-05 41.8 3.8 52 44-98 364-438 (474)
78 2vob_A Trypanothione synthetas 78.4 3.4 0.00012 39.7 6.3 60 44-106 544-615 (652)
79 3k1t_A Glutamate--cysteine lig 41.2 48 0.0017 30.0 6.1 61 153-216 27-93 (432)
80 3fov_A UPF0102 protein RPA0323 37.2 1.3E+02 0.0045 22.7 7.7 63 151-215 25-101 (134)
81 2xko_C PIPX, global nitrogen r 34.3 10 0.00035 27.0 0.5 19 80-98 4-24 (89)
82 3n6x_A Putative glutathionylsp 33.3 34 0.0012 31.5 3.9 23 165-189 142-164 (474)
83 3n5b_B ASR0485 protein; PII, P 32.5 12 0.00042 27.6 0.6 24 75-98 22-47 (112)
84 1xdn_A RNA editing ligase MP52 22.6 2.4E+02 0.008 24.1 7.0 45 74-127 32-80 (277)
85 3k1t_A Glutamate--cysteine lig 21.8 2.3E+02 0.0077 25.7 6.9 58 45-105 280-360 (432)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=4.6e-43 Score=316.03 Aligned_cols=215 Identities=31% Similarity=0.510 Sum_probs=169.9
Q ss_pred cchhccCccccCCCCCCCCcEEEEecC-CCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEE
Q 027674 2 LQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 80 (220)
Q Consensus 2 ~~~~~~~~~~~~~~~I~~P~~~~i~~~-~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQ 80 (220)
++.++....+...+||++|+++++.+. ..+..+.+...+++||+|+||+.|+||. +|+|+++++.++|+.++.|+++|
T Consensus 121 ~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~-s~~v~~v~~~~~l~~~~~~~lvQ 199 (346)
T 2q7d_A 121 YELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTN-SHEMAIVFNQEGLNAIQPPCVVQ 199 (346)
T ss_dssp HHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTT-CCEEEEECSGGGTTC--CCEEEE
T ss_pred HHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcce-eeeeEEecCHHHHHhcCCCEEEE
Confidence 344444433346779999999999643 3455566656789999999999999996 99999999999999999999999
Q ss_pred eecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecC--cccccccCCCCCCCc--cccCCCChHHHHHHH
Q 027674 81 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR--VSCAAASADDADLDP--CVAELPPRPLLERLA 156 (220)
Q Consensus 81 efI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lA 156 (220)
|||+|+|++|||||||+++++++|+|+|++..+. +..++|+|.. +++++..+.....++ ...+++++++++++|
T Consensus 200 efI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA 277 (346)
T 2q7d_A 200 NFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELS 277 (346)
T ss_dssp ECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHH
T ss_pred EeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCCccccccccccccccccCCChHHHHHHH
Confidence 9999999999999999999999999999876543 2356777765 566654322111111 123355678899999
Q ss_pred HHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHHHHHHHHHhhhccccCC
Q 027674 157 KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC 220 (220)
Q Consensus 157 ~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~~~~~~~~~~~~ 220 (220)
.+++++||++++|||+|++.++| ++||+|||+||||+|+++|.+++.++|+++++++++-.+|
T Consensus 278 ~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~~~~~~ 340 (346)
T 2q7d_A 278 RALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAA 340 (346)
T ss_dssp HHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccccccchHHHHHHHHHHHHhhccCCCccc
Confidence 99999999999999999986444 5999999999999999999999999999999988876665
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.96 E-value=1.2e-28 Score=216.27 Aligned_cols=199 Identities=22% Similarity=0.448 Sum_probs=143.0
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCCCCeEEEEE
Q 027674 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVY 93 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h~g~~~KV~ 93 (220)
..||++|++..+++. .+..+.+...+++||+|+||..|+|+.+++++.++.++++|..++.++++||||++.|++++|+
T Consensus 108 ~~gi~~P~~~~~~~~-~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~ 186 (324)
T 1z2n_X 108 KNNIPIPNSFSVKSK-EEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVF 186 (324)
T ss_dssp HTTCCCSCEEEESSH-HHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTTCCSSEEEEECCCCTTCEEEEE
T ss_pred HCCCCCCCEEEeCCH-HHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEE
Confidence 468999999999632 2333333344577999999999877767799999999999998889999999999889999999
Q ss_pred EECCeEEEEEEecCCCCcccccccCCceeeec----------Cccccc----ccCC-CCCC--CccccCCCChHHHHHHH
Q 027674 94 IVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP----------RVSCAA----ASAD-DADL--DPCVAELPPRPLLERLA 156 (220)
Q Consensus 94 ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~----------~~~~~~----~~~~-~~~~--~~~~~~~~~~~~~~~lA 156 (220)
|+|+++..+.|++++++..++..+ ..+|+++ .+++.. +... .... .+........++++++|
T Consensus 187 v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a 265 (324)
T 1z2n_X 187 CIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLA 265 (324)
T ss_dssp EETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHH
T ss_pred EECCEEEEEEecCcccccCCCccc-eeeccccchhhhccccccccccccccccccchhhccccCCccccCCCHHHHHHHH
Confidence 999999888888887764432211 1133322 011100 0000 0000 00001111226799999
Q ss_pred HHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHHHHHHHHHhhhcc
Q 027674 157 KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYK 216 (220)
Q Consensus 157 ~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~~~~~~~~ 216 (220)
.++.++||+.++|||++++.++| ++||+|||++|||++.+++. .+.++|.+.++.+++
T Consensus 266 ~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~~~~~-~i~~~l~~~~~~~~~ 323 (324)
T 1z2n_X 266 YKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYGGKVDFD-WFVEKVALCYTEVAK 323 (324)
T ss_dssp HHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTTSCBCHH-HHHHHHHHHHHC---
T ss_pred HHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcCCCCCHH-HHHHHHHHHHHHhhc
Confidence 99999999999999999974344 68999999999999999998 999999999877654
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.92 E-value=1.9e-24 Score=192.04 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=118.3
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCCCCc
Q 027674 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT 111 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp~~~ 111 (220)
..++||+|+||..| | +|.||.++.++++++++ +..+++||||+ .|+|+||+|||+++.+++|++..
T Consensus 149 ~~~g~PvVvK~~~G--s-~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~--- 221 (309)
T 1i7n_A 149 TLPTFPVVVKIGHA--H-SGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS--- 221 (309)
T ss_dssp SCCCSSEEEEESSC--S-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC---
T ss_pred hccCCCEEEEeCCC--C-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC---
Confidence 35799999999984 4 89999999999998653 56889999999 79999999999999999999742
Q ss_pred ccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEEEEEeCCCCCeEEEEEecC-
Q 027674 112 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY- 189 (220)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l-Gl~l~G~Dvi~~~~~~~~~~ViEVN~- 189 (220)
++|++|. . .+..+ ..+.+++.+++|.++.+++ |++++|||+|.+.+ | +++|+|||.
T Consensus 222 -g~wrtN~--------~-------~~~~e----~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~-g-~~~V~EVN~~ 279 (309)
T 1i7n_A 222 -GNWKTNT--------G-------SAMLE----QIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD-G-KDYIFEVMDC 279 (309)
T ss_dssp -TTTSCSC--------C-------CSSEE----EECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECT
T ss_pred -CCCeecC--------C-------cceee----ecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCC
Confidence 3566541 0 11111 1334677899999999999 89999999998863 4 589999999
Q ss_pred -CCCCCCCCC-chhHHHHHHHHHHhhhcc
Q 027674 190 -FPGYGKMPE-YEHIFTDFLLSLTQSRYK 216 (220)
Q Consensus 190 -fPg~~g~~~-~~~~l~~~i~~~~~~~~~ 216 (220)
+||++|... ....+.+++.+.+++..+
T Consensus 280 ~~P~~~~~~~~~~~~ia~~ii~~~~~~~~ 308 (309)
T 1i7n_A 280 SMPLIGEHQVEDRQLITDLVISKMNQLLS 308 (309)
T ss_dssp TCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence 999998864 456778888888776543
No 4
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.91 E-value=8.3e-24 Score=190.43 Aligned_cols=148 Identities=15% Similarity=0.215 Sum_probs=116.9
Q ss_pred CCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCCCCcc
Q 027674 40 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTK 112 (220)
Q Consensus 40 ~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp~~~~ 112 (220)
.++||+|+||..| | ++.||.++.++++++++ +..+++||||+ .|+|+||+|||+++.+++|++..
T Consensus 167 ~~g~PvVvK~~~G--s-~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~---- 238 (344)
T 2p0a_A 167 APHFPVVVKLGHA--H-AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS---- 238 (344)
T ss_dssp CSSSSEEEEESSC--C-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----
T ss_pred ccCCCEEEEeCCC--C-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----
Confidence 5799999999984 4 89999999999998752 56789999999 79999999999999999998742
Q ss_pred cccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEEEEEeCCCCCeEEEEEecC--
Q 027674 113 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY-- 189 (220)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l-Gl~l~G~Dvi~~~~~~~~~~ViEVN~-- 189 (220)
++|++|.+ .+.. ..++.+++.+++|.++.+++ |++++|||+|.+.+ | ++||+|||.
T Consensus 239 g~wrtN~~---------------~~~~----e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~-G-~~~VlEVN~~~ 297 (344)
T 2p0a_A 239 GNWKANTG---------------SAML----EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKD-G-RDYIIEVMDSS 297 (344)
T ss_dssp SCSSTTSS---------------SEEE----EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTT
T ss_pred CCCeecCC---------------ceEE----EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEEcCCC
Confidence 35666521 0111 11334577899999999999 89999999998863 4 589999999
Q ss_pred CCCCCCCCCc-hhHHHHHHHHHHhhhcc
Q 027674 190 FPGYGKMPEY-EHIFTDFLLSLTQSRYK 216 (220)
Q Consensus 190 fPg~~g~~~~-~~~l~~~i~~~~~~~~~ 216 (220)
.|++++.... ...+.+++.+.++++.+
T Consensus 298 ~P~~~~~~~~~~~~Ia~~ii~~i~~~~~ 325 (344)
T 2p0a_A 298 MPLIGEHVEEDRQLMADLVVSKMSQLPM 325 (344)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHhcC
Confidence 9999988753 45777777777766543
No 5
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.90 E-value=1.2e-23 Score=186.04 Aligned_cols=175 Identities=20% Similarity=0.257 Sum_probs=121.5
Q ss_pred CCCCCCCCcEEEEecCCC-----------CchHHHHhcCCCCcEEEeecccC------------CCCccccceeeeChhh
Q 027674 13 SYGKVDVPRQLVIERDAS-----------SIPDVVLKAGLTLPLVAKPLVAD------------GSAKSHELSLAYDQYS 69 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~-----------~~~~~l~~~~l~~P~VvKP~~a~------------Gs~~sh~m~lv~~~~~ 69 (220)
..+|||||++++++.+.. +..+ .....+++|+|.||+.|. |..+.+-+..+.|.++
T Consensus 106 ~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~-~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS 184 (330)
T 3t7a_A 106 QAEGILLPRYAILNRDPNNPKECNLIEGEDHVE-VNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSS 184 (330)
T ss_dssp HHTTCCCCCEEEECCBTTBGGGSSEEECSSEEE-ETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEE
T ss_pred HHcCCCCCCEEEEeCCCCCccccceeccchhhh-hccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCccc
Confidence 357899999999975421 1111 012457899999999973 3324455555555544
Q ss_pred hh------ccCCCeEEEeecCCCCeEEEEEEECCeEEEEE-EecCCCCcccccccCCceeeecCcccccccCCCCCCCcc
Q 027674 70 LK------KLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVR-RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPC 142 (220)
Q Consensus 70 L~------~~~~p~vvQefI~h~g~~~KV~ViG~~v~~~~-R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 142 (220)
.- .-+..+++||||+.+|+|+||||||+++++++ |+| |. ..++|++|. | .+..+...
T Consensus 185 ~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s-p~-~~G~~r~N~-----~----gG~~~~~v----- 248 (330)
T 3t7a_A 185 VYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-PA-LDGKVERDS-----E----GKEVRYPV----- 248 (330)
T ss_dssp EEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC-TT-SSCBCCBCT-----T----SCBCCEEC-----
T ss_pred ccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC-CC-CCCcEEEcC-----C----CCceeeee-----
Confidence 31 12568999999999999999999999998765 655 42 123555441 1 11111122
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHHHHHHHHH
Q 027674 143 VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLT 211 (220)
Q Consensus 143 ~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~~~ 211 (220)
..+++.+++|.++++++|++++|||+++.++ ++||+|||.+|=.|+.+.|+......|.+.+
T Consensus 249 ----~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~ 310 (330)
T 3t7a_A 249 ----ILNAREKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFVKNSMKYYDDCAKILGNIV 310 (330)
T ss_dssp ----CCCHHHHHHHHHHHHHTTBSEEEEEEEEETT---EEEEEEEEESCCCSSCHHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHhCCceEEEEEEEECC---ccEEEEeCCCccccCchhHHHHHHHHHHHHH
Confidence 2346679999999999999999999999752 5789999999999999888766555555543
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.90 E-value=5.1e-23 Score=189.14 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=118.0
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCCCCc
Q 027674 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT 111 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp~~~ 111 (220)
..++||+|+||..| | +++||.++.++++++.+ +..+++||||+ .|+|+||+|||+++++++|++..
T Consensus 261 ~~~g~PvVvKp~~G--S-~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~--- 333 (422)
T 1pk8_A 261 SSTTYPVVVKMGHA--H-SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS--- 333 (422)
T ss_dssp CCSSSSEEEEESSC--C-TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS---
T ss_pred hccCCCEEEEeCCC--C-ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC---
Confidence 35789999999994 4 89999999999998753 56789999999 79999999999999999998742
Q ss_pred ccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEEEEEeCCCCCeEEEEEecC-
Q 027674 112 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY- 189 (220)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l-Gl~l~G~Dvi~~~~~~~~~~ViEVN~- 189 (220)
++|++|-+ .+.. ..++.+++.+++|.++.+++ |++++|||+|.+.+ | ++||+|||.
T Consensus 334 -g~WrtNvg---------------~g~~----e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~d-G-~~~VlEVN~s 391 (422)
T 1pk8_A 334 -GNWKTNTG---------------SAML----EQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKD-G-RDHIIEVVGS 391 (422)
T ss_dssp -SCSSTTSS---------------CEEE----EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECT
T ss_pred -CCceeccC---------------ceee----eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCC
Confidence 35766521 0111 11234577899999999999 89999999998863 4 589999999
Q ss_pred -CCCCCCCCC-chhHHHHHHHHHHhhhc
Q 027674 190 -FPGYGKMPE-YEHIFTDFLLSLTQSRY 215 (220)
Q Consensus 190 -fPg~~g~~~-~~~~l~~~i~~~~~~~~ 215 (220)
.||++|... ....+.++|.+.++++.
T Consensus 392 ~~P~~~g~~~~~~~~IA~~ii~~i~~~~ 419 (422)
T 1pk8_A 392 SMPLIGDHQDEDKQLIVELVVNKMTQAL 419 (422)
T ss_dssp TCCCCTTCHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCCccchhhhHHHHHHHHHHHHHHHhc
Confidence 999998875 35678888888887654
No 7
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.85 E-value=4.2e-21 Score=172.18 Aligned_cols=167 Identities=19% Similarity=0.337 Sum_probs=116.4
Q ss_pred CCCCCCCCcEEEEecCCCC-chHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecC
Q 027674 13 SYGKVDVPRQLVIERDASS-IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVN 84 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~-~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~ 84 (220)
..+||++|++..+.+.... ..+. ....++||+|+||..++ +|.||.++.++++|.+. +.++++|+||
T Consensus 148 ~~~Gip~p~~~~~~~~~~~~~~~~-~~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i- 222 (357)
T 4fu0_A 148 SLAGISVPKSVTFKRFNEEAAMKE-IEANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI- 222 (357)
T ss_dssp HHTTCBCCCEEEEEGGGHHHHHHH-HHHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC-
T ss_pred HHCCCCCCCEEeecCCChHHHHHH-HHHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec-
Confidence 4678999999999643211 1111 23569999999999854 37899999999999752 5689999999
Q ss_pred CCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHH
Q 027674 85 HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 85 h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
.|+++.|.|+|+....+. + ..+.....++|+|..++..+.. ..++.++++. .++++++|.++.++
T Consensus 223 -~G~e~~v~vl~~~~~~~~----~---v~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~-----~~~i~~~A~~~~~a 289 (357)
T 4fu0_A 223 -NGFEVGCAVLGIDELIVG----R---VDEIELSSGFFDYTEKYTLKSSKIYMPARIDAEA-----EKRIQEAAVTIYKA 289 (357)
T ss_dssp -CSEEEEEEEEESSSEEEC----C---CEEEEECHHHHTSCSBCSSCCEEEESSCSCCHHH-----HHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEEecCCceEE----E---EEEEEcccccccccccccCCCceEecCCCCCHHH-----HHHHHHHHHHHHHH
Confidence 599999999987632211 0 0111112345666655433221 1234444332 56799999999999
Q ss_pred hCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027674 163 LGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 163 lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
||+. ++++|++++. +| ++||+|||..|||+...-+
T Consensus 290 Lg~~G~~~VDf~~~~-dg-~~~vlEvNt~PG~t~~S~~ 325 (357)
T 4fu0_A 290 LGCSGFSRVDMFYTP-SG-EIVFNEVNTIPGFTSHSRY 325 (357)
T ss_dssp TTCCEEEEEEEEECT-TC-CEEEEEEESSCCCSTTCHH
T ss_pred hCCcceEEEEEEEeC-CC-CEEEEEEeCCCCCCcccHH
Confidence 9997 7779999985 44 6999999999999875433
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.85 E-value=2e-20 Score=164.44 Aligned_cols=179 Identities=15% Similarity=0.196 Sum_probs=114.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHH--hcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeec
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVL--KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~--~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI 83 (220)
..+||++|++..+++. ++..+... ...++||+|+||..++ +|.++.++.++++|.+. +.++++||||
T Consensus 116 ~~~Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i 191 (317)
T 4eg0_A 116 QQTGVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEG---SSVAVLKVKTADALPAALSEAATHDKIVIVEKSI 191 (317)
T ss_dssp HHTTCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSEEEEEECC
T ss_pred HHCCcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 4578999999999743 23333220 1457999999999864 47789999999998642 5689999999
Q ss_pred CCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccC--CCCCCCccccCCCChHHHHHHHHHHHH
Q 027674 84 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRR 161 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~l~~ 161 (220)
++ |+++.|.|+|+++....+.. ...++|+|...+..+... .+..++++. .++++++|.++.+
T Consensus 192 ~~-G~E~~v~vl~~~~~~~~~i~----------~~~~~~~~~~k~~~g~~~~~~P~~l~~~~-----~~~l~~~a~~~~~ 255 (317)
T 4eg0_A 192 EG-GGEYTACIAGDLDLPLIKIV----------PAGEFYDYHAKYVANDTQYLIPCGLPAEQ-----ETELKRIARRAFD 255 (317)
T ss_dssp CS-SEEEEEEEETTCCCCCEEEE----------C---------------CEEESSCSSCHHH-----HHHHHHHHHHHHH
T ss_pred CC-CcEEEEEEECCcccceEEEe----------eCCceechhhcccCCCeeEEcCCCCCHHH-----HHHHHHHHHHHHH
Confidence 64 89999999999754322211 112345555443322110 122232221 4679999999999
Q ss_pred HhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhH-------HHHHHHHHHhh
Q 027674 162 QLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHI-------FTDFLLSLTQS 213 (220)
Q Consensus 162 ~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~-------l~~~i~~~~~~ 213 (220)
+||+. ++++|++++. +| ++||+|||..||++...-++.+ +.+.+.+.++.
T Consensus 256 ~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li~~ 313 (317)
T 4eg0_A 256 VLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVLSL 313 (317)
T ss_dssp TTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99997 8889999985 34 6999999999999987555432 44555555543
No 9
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.84 E-value=4.7e-20 Score=164.40 Aligned_cols=160 Identities=23% Similarity=0.352 Sum_probs=109.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~h 85 (220)
..+||++|++..+++.... ....++||+|+||..++ +|.++.++.++++|.. .+.++++||||+
T Consensus 141 ~~~Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~- 211 (346)
T 3se7_A 141 RSAGIATPNFWTVTADEKI-----PTDQLTYPVFVKPARSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI- 211 (346)
T ss_dssp HHTTCBCCCEEEEETTSCC-----CTTTCCSSEEEEESSCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC-
T ss_pred HHcCcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeCCCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC-
Confidence 4578999999999753311 23568999999999864 3788999999999865 256899999996
Q ss_pred CCeEEEEEEECC----eEEEEEEecCCCCcccccccCCceeee----cCccccccc--CCCCCCCccccCCCChHHHHHH
Q 027674 86 GGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRF----PRVSCAAAS--ADDADLDPCVAELPPRPLLERL 155 (220)
Q Consensus 86 ~g~~~KV~ViG~----~v~~~~R~slp~~~~~~~~~~~g~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 155 (220)
|+++.|.|+++ ++....+.. ...++|+| ..++..+.. ..++.++++. .++++++
T Consensus 212 -G~E~~v~vl~~~~~~~~~~~~e~~----------~~~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~-----~~~i~~~ 275 (346)
T 3se7_A 212 -GTEIGCAVMGNGPELITGEVDQIT----------LSHGFFKIHQESTPESGSDNSAVTVPADISTTS-----RSLVQDT 275 (346)
T ss_dssp -SEEEEEEEEEETTEEEECCCEEEC----------CC--------------CGGGSCEESSCCCCHHH-----HHHHHHH
T ss_pred -CEEEEEEEEecCCCeEEEeeEEEe----------cCCCCcCcccchhccccCCCeeEEeCCCCCHHH-----HHHHHHH
Confidence 89999999977 222222221 12356777 554432211 1122232221 4579999
Q ss_pred HHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027674 156 AKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 156 A~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
|.++.++||+. ++++|++++.+ | ++|++|||..||+++..-+
T Consensus 276 a~~~~~~lg~~G~~~vD~~~~~~-g-~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 276 AKAVYRALGCRGLSRVDLFLTED-G-KVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp HHHHHHHHTCCEEEEEEEEECTT-S-CEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHhCCceEEEEEEEEeCC-C-CEEEEEEeCCCCCCcccHH
Confidence 99999999995 88899999863 4 6999999999999876433
No 10
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.84 E-value=5.1e-20 Score=160.15 Aligned_cols=175 Identities=15% Similarity=0.259 Sum_probs=117.4
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h 85 (220)
..+||++|++..+++.. +..+. ....++||+|+||..++ +|+++.++.++++|.+. +.++++||||+
T Consensus 106 ~~~Gip~p~~~~~~~~~-~~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~- 179 (307)
T 3r5x_A 106 RYEGIETPDWIELTKME-DLNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK- 179 (307)
T ss_dssp HHTTCCCCCEEEEESSS-CCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC-
T ss_pred HHCCCCCCCEEEEeChh-hhhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC-
Confidence 35789999999997432 33221 12357999999999864 47899999999998753 67999999996
Q ss_pred CCeEEEEEEECCeEEEE-EEecCCCCcccccccCCceeeecCcc-cccccCCCCCCCccccCCCChHHHHHHHHHHHHHh
Q 027674 86 GGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVS-CAAASADDADLDPCVAELPPRPLLERLAKELRRQL 163 (220)
Q Consensus 86 ~g~~~KV~ViG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l 163 (220)
|++++|.++|+++... .+... .++|+|...+ ..+....+..++++. .+.++++|.++.++|
T Consensus 180 -G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~~~-----~~~i~~~a~~~~~~l 242 (307)
T 3r5x_A 180 -GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPAEL-----KERVNKASLACYKAL 242 (307)
T ss_dssp -SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCHHH-----HHHHHHHHHHHHHHT
T ss_pred -CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCHHH-----HHHHHHHHHHHHHHh
Confidence 8999999999987422 11110 1233333322 111111122333221 456899999999999
Q ss_pred CCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC-----------chhHHHHHHHHHHhh
Q 027674 164 GLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE-----------YEHIFTDFLLSLTQS 213 (220)
Q Consensus 164 Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~-----------~~~~l~~~i~~~~~~ 213 (220)
|+. ++++|+++++ + ++|++|||..||+++... +.+++.+.|...+++
T Consensus 243 g~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~~~ 301 (307)
T 3r5x_A 243 KCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRV 301 (307)
T ss_dssp TCCSEEEEEEEEET--T-EEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEC--C-eEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 999 8899999983 3 699999999999987533 344555555555544
No 11
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.84 E-value=5.4e-20 Score=166.69 Aligned_cols=167 Identities=14% Similarity=0.207 Sum_probs=107.0
Q ss_pred CCCCCCCCcEEEEecCCC-C-chHHHHhcCCCCc-EEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEee
Q 027674 13 SYGKVDVPRQLVIERDAS-S-IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEF 82 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~-~-~~~~l~~~~l~~P-~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQef 82 (220)
..+||++|++..+++... . ..+. ....++|| +||||..++ + |.||.++.++++|.. .+.++++|||
T Consensus 149 ~~~GIp~p~~~~~~~~~~~~~~~~~-~~~~lg~P~vvVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~ 224 (372)
T 3tqt_A 149 RAGGIPVVDWHTLSPRDATEGVYQR-LLDRWGTSELFVKAVSLG-S--SVATLPVKTETEFTKAVKEVFRYDDRLMVEPR 224 (372)
T ss_dssp HHTTCCBCCCEEECTTSCCTTHHHH-HHHHC---CEEEEESSCC-S--GGGEEEECSHHHHHHHHHHHTTTCSCEEEEEC
T ss_pred HHCCcCCCCEEEEechhhhhhHHHH-HHHhcCCCeEEEEECCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCCEEEECC
Confidence 357899999999964322 1 1111 23468999 999999854 3 789999999999864 2568999999
Q ss_pred cCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHH
Q 027674 83 VNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
|+ |+++.|.|+|++.. +.+ + ..++....++|+|..++..+. ...++.++++. .++++++|.++
T Consensus 225 I~--G~E~~v~vl~~~~~---~~~-~---~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~ 290 (372)
T 3tqt_A 225 IR--GREIECAVLGNGAP---KAS-L---PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESV-----TKQIQQIAIDA 290 (372)
T ss_dssp CC--SEEEEEEEEESSSC---EEC-C---CEEEECC---------------CEEESCCCCCHHH-----HHHHHHHHHHH
T ss_pred CC--CEEEEEEEEeCCCc---eEe-e---eEEEecCCCccchhhcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHH
Confidence 96 89999999988621 111 1 112222345778776654322 11133333322 46799999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027674 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
.++||+. ++++|++++. +| ++|++|||..|||+...-+
T Consensus 291 ~~aLg~~G~~rvDf~~~~-dg-~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 291 FKMVHCSGMARVDFFVTP-NN-KVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp HHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCSTTCHH
T ss_pred HHHhCCccEEEEEEEEeC-CC-cEEEEEEECCCCcCccCHH
Confidence 9999998 7779999986 34 6999999999999876443
No 12
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.83 E-value=1.4e-19 Score=159.96 Aligned_cols=156 Identities=17% Similarity=0.262 Sum_probs=112.3
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h 85 (220)
..+||++|++..+++.... . ..++||+|+||..++ +|.++.++.++++|... +.++++||||+
T Consensus 127 ~~~Gip~p~~~~~~~~~~~---~---~~~g~PvvvKP~~g~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~- 196 (322)
T 2fb9_A 127 AQAGVPVVPWVAVRKGEPP---V---VPFDPPFFVKPANTG---SSVGISRVERFQDLEAALALAFRYDEKAVVEKALS- 196 (322)
T ss_dssp HHTTCCCCCEEEEETTSCC---C---CCSCSCEEEEETTCC---TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-
T ss_pred HHCCCCCCCEEEEECchhh---h---hccCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-
Confidence 3578999999999643321 1 168999999999964 36799999999998752 56899999995
Q ss_pred CC-eEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHH
Q 027674 86 GG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 86 ~g-~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
| +++.|.|+|++ +....+.. ...++|+|..++..+.. ..++.++++. .++++++|.++
T Consensus 197 -G~~E~~v~vl~~~~~~~~~~~ei~----------~~~~~~~~~~k~~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~ 260 (322)
T 2fb9_A 197 -PVRELEVGVLGNVFGEASPVGEVR----------YEAPFYDYETKYTPGRAELLIPAPLDPGT-----QETVQELALKA 260 (322)
T ss_dssp -SCEEEEEEEESSSSCEEEEEEEEE----------EECCEEETTTEEECCEEEEESSCCCCTTH-----HHHHHHHHHHH
T ss_pred -CCeeEEEEEEeCCCceEeeeEEEe----------eCCCccCHHHcccCCCeEEEeCCCCCHHH-----HHHHHHHHHHH
Confidence 7 99999999985 33222211 01235666554432211 1133333322 56799999999
Q ss_pred HHHhCC-ceeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 160 RRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 160 ~~~lGl-~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
.++||+ .++++|++++ +| ++||+|||..||++...
T Consensus 261 ~~alg~~G~~~vD~~~~--~g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 261 YKVLGVRGMARVDFFLA--EG-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp HHHHTCCSEEEEEEEEE--TT-EEEEEEEESSCCCSSSC
T ss_pred HHHhCCceEEEEEEEEE--CC-cEEEEEEECCCCCCccc
Confidence 999999 5889999998 34 69999999999998764
No 13
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.83 E-value=5.5e-20 Score=167.26 Aligned_cols=180 Identities=16% Similarity=0.255 Sum_probs=109.6
Q ss_pred CCC-CCCCcEEEEecCCCCchHH--HHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeec
Q 027674 14 YGK-VDVPRQLVIERDASSIPDV--VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFV 83 (220)
Q Consensus 14 ~~~-I~~P~~~~i~~~~~~~~~~--l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI 83 (220)
.+| |++|++..+.+.. +..+. -....++||+||||..++ +|.++.++.++++|.+. +.++++||||
T Consensus 171 ~~G~Ipvp~~~~~~~~~-~~~~~~~~~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I 246 (383)
T 3k3p_A 171 SATTIPQVAYVALIEGE-PLESKLAEVEEKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGV 246 (383)
T ss_dssp HHCCCCBCCEEEEETTS-CHHHHHHHHHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred hCCCcCCCCEEEEeCcc-chhHHHHHHHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 567 9999999997432 11011 123468999999999864 37899999999998742 5689999999
Q ss_pred CCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHH
Q 027674 84 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRR 161 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~l~~ 161 (220)
+ |+++.|.|+|+....+ +. ..++....++|+|..++..+.. ..++.++++. .++++++|.++.+
T Consensus 247 ~--G~E~~v~vl~d~~~~~---~~----~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~ 312 (383)
T 3k3p_A 247 D--AREIEVGILGNTDVKT---TL----PGEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVI-----VEKMRDYAATAFR 312 (383)
T ss_dssp C--SEEEEEEEEESSSCEE---CC----CEEEC-----------------CEESSCCCCHHH-----HHHHHHHHHHHHH
T ss_pred C--CeEEEEEEEeCCCeeE---Ee----eEEEecCCCccchhhcccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHH
Confidence 6 8999999998752111 11 1122223457887776643211 1123333322 4679999999999
Q ss_pred HhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC-----------chhHHHHHHHHHHhh
Q 027674 162 QLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE-----------YEHIFTDFLLSLTQS 213 (220)
Q Consensus 162 ~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~-----------~~~~l~~~i~~~~~~ 213 (220)
+||+. ++++|++++. +| ++||+|||..|||+...- |.+++...|...+++
T Consensus 313 aLg~~G~~~vDf~~~~-~g-~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 374 (383)
T 3k3p_A 313 TLGCCGLSRCDFFLTE-DG-KVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEM 374 (383)
T ss_dssp HTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCceEEEEEEEEEC-CC-CEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99998 7789999985 34 699999999999986533 344555555555544
No 14
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.82 E-value=2.9e-19 Score=161.41 Aligned_cols=166 Identities=18% Similarity=0.278 Sum_probs=113.6
Q ss_pred CCCCCCCCcEEEEecCCC--CchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeec
Q 027674 13 SYGKVDVPRQLVIERDAS--SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~--~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI 83 (220)
..+||++|++..+++... ...+.+ ...++||+|+||..++ +|.+|.++.++++|.. .+.++++||||
T Consensus 144 ~~~Gip~p~~~~~~~~~~~~~~~~~~-~~~~g~PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I 219 (377)
T 1ehi_A 144 TVNGIRNTKYIVVDPESANNWSWDKI-VAELGNIVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAV 219 (377)
T ss_dssp HTTTCCCCCEEEECTTGGGGCCHHHH-HHHHCSCEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECC
T ss_pred HHcCCCCCCEEEEeccccchHHHHHH-HHhcCCCEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 467899999999964311 012211 2347899999999964 3678999999999875 25689999999
Q ss_pred CCCC-eEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCccccc-cc--CCCCCCCccccCCCChHHHHHHH
Q 027674 84 NHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA-AS--ADDADLDPCVAELPPRPLLERLA 156 (220)
Q Consensus 84 ~h~g-~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~lA 156 (220)
+ | +++.|.|+|+. +....+.-.... ....++|+|..++..+ .. ..++.++++. .+.++++|
T Consensus 220 ~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~-----~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~-----~~~i~~~a 287 (377)
T 1ehi_A 220 N--GARELEVGVIGNDQPLVSEIGAHTVPNQ-----GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEV-----TKEVKQMA 287 (377)
T ss_dssp C--CSCEEEEEEEESSSCEEEEEEEEECTTS-----SSSSCCCCHHHHTTCCTTCEEESSCCCCHHH-----HHHHHHHH
T ss_pred C--CCceEEEEEEcCCCcEEEeeEEEEecCC-----CCcCceeCHHhcccCCCCeeEEeCCCCCHHH-----HHHHHHHH
Confidence 5 7 99999999884 444333221100 0013456665443322 11 1123333221 46799999
Q ss_pred HHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 157 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 157 ~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
.++.++||+. ++++|++++. +| ++||+|||..||++..
T Consensus 288 ~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEiN~rpg~t~~ 326 (377)
T 1ehi_A 288 LDAYKVLNLRGEARMDFLLDE-NN-VPYLGEPNTLPGFTNM 326 (377)
T ss_dssp HHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCSTT
T ss_pred HHHHHHcCCCcEEEEEEEEeC-CC-CEEEEEEeCCCCCCcc
Confidence 9999999998 8889999975 34 5899999999998876
No 15
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.82 E-value=7.4e-20 Score=166.33 Aligned_cols=164 Identities=16% Similarity=0.284 Sum_probs=107.2
Q ss_pred CCCCCCCCcEEEEecCC---CCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEee
Q 027674 13 SYGKVDVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEF 82 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~---~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQef 82 (220)
...||++|++..+++.. .+..+. ...++||+||||..++ + |.|+.++.++++|.+. +.++++|||
T Consensus 168 ~~~GIp~p~~~~~~~~~~~~~~~~~~--~~~lg~PvvVKP~~gg-s--s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~ 242 (386)
T 3e5n_A 168 RDARLAVAPFVCFDRHTAAHADVDTL--IAQLGLPLFVKPANQG-S--SVGVSQVRTADAFAAALALALAYDHKVLVEAA 242 (386)
T ss_dssp HHTTCCBCCEEEEEHHHHTTCCHHHH--HHHHCSSEEEEESBSC-S--STTCEEECSGGGHHHHHHHHTTTCSEEEEEEC
T ss_pred HHCCCCCCCEEEEeCcccchhhHHHH--HHhcCCCEEEEECCCC-c--CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcC
Confidence 45789999999996421 123322 2357999999999864 3 6799999999998652 568999999
Q ss_pred cCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHH
Q 027674 83 VNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
|+ |+++.|.|+|++...+. ..+++....++|+|..++..+. ...++.++++. .++++++|.++
T Consensus 243 I~--G~E~~v~vl~~~~~~~~-------~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~ 308 (386)
T 3e5n_A 243 VA--GREIECAVLGNAVPHAS-------VCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQT-----QQRIQQIAVQA 308 (386)
T ss_dssp CC--SEEEEEEEECSSSCEEE-------EEEEECC-----------------CEESSCSSCHHH-----HHHHHHHHHHH
T ss_pred CC--CeEEEEEEEeCCCceEE-------EeEEEEeCCcccchhcccCCCCCeEEEECCCCCHHH-----HHHHHHHHHHH
Confidence 96 89999999988631110 0111112234677766553211 11123333322 45799999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
.++||+. ++++|++++. +| ++|++|||..|||+...
T Consensus 309 ~~aLg~~G~~~vDf~~~~-dg-~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 309 YQALGCAGMARVDVFLCA-DG-RIVINEVNTLPGFTRIS 345 (386)
T ss_dssp HHHHTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred HHHhCCccEEEEEEEEEC-CC-cEEEEEeECCCCCCccC
Confidence 9999998 7789999985 34 69999999999998764
No 16
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.81 E-value=2.4e-19 Score=161.29 Aligned_cols=161 Identities=16% Similarity=0.272 Sum_probs=113.1
Q ss_pred CCCCCCCCcEEEEecCC---CCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEee
Q 027674 13 SYGKVDVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEF 82 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~---~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQef 82 (220)
..+||++|++..+++.. .+..+. ...++||+|+||..++ + |.|+.++.++++|... +.++++|||
T Consensus 149 ~~~Gip~p~~~~~~~~~~~~~~~~~~--~~~lg~PvvVKP~~gg-s--s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~ 223 (364)
T 3i12_A 149 RDAGLNIAPFITLTRTNRHAFSFAEV--ESRLGLPLFVKPANQG-S--SVGVSKVANEAQYQQAVALAFEFDHKVVVEQG 223 (364)
T ss_dssp HHTTCCBCCEEEEETTTGGGCCHHHH--HHHHCSSEEEEETTCC-T--TTTCEEESSHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred HHCCCCCCCEEEEEccccchhhHHHH--HHhcCCCEEEEECCCC-C--CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcC
Confidence 45789999999997432 133332 2357899999999864 3 6899999999998742 578999999
Q ss_pred cCCCCeEEEEEEECCeE---EEEEEecCCCCcccccccCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHH
Q 027674 83 VNHGGVLFKVYIVGEAI---KVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLA 156 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~v---~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lA 156 (220)
|+ |+++.|.|++++. ....+ +....++|+|..++..+. ...++.++++. .++++++|
T Consensus 224 I~--G~E~~v~vl~~~~~~~~~~~e----------i~~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a 286 (364)
T 3i12_A 224 IK--GREIECAVLGNDNPQASTCGE----------IVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEV-----NDKIRAIA 286 (364)
T ss_dssp CC--SEEEEEEEEESSSCEEEEEEE----------EECCTTCC--TTTTSGGGGCEEESSCSSCHHH-----HHHHHHHH
T ss_pred cC--CeEEEEEEEeCCCceEeeeEE----------EecCCCccCHHHcccCCCceEEEeCCCCCHHH-----HHHHHHHH
Confidence 95 7999999998762 21111 111234677766553321 11133333322 46799999
Q ss_pred HHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 157 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 157 ~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
.++.++||+. ++++|++++. +| ++|++|||..||++...
T Consensus 287 ~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 287 IQAYQTLGCAGMARVDVFLTA-DN-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp HHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred HHHHHHhCCceEEEEEEEEec-CC-CEEEEEeeCCCCCCCCC
Confidence 9999999996 7779999985 34 69999999999998764
No 17
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.81 E-value=3.2e-19 Score=154.14 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=110.2
Q ss_pred CCCCCCCCcEEEEecCCCCchHH------HHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDV------VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~------l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vv 79 (220)
..+||++|++..+++. +..+. .....++||+|+||..|+ +|.++.++.++++|..+ +.++++
T Consensus 105 ~~~gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~~~~~~~~~lv 179 (306)
T 1iow_A 105 QGAGLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRLAFQHDEEVLI 179 (306)
T ss_dssp HHTTCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHHHTTTCSEEEE
T ss_pred HHCCCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhhCCCEEE
Confidence 3578999999998642 22210 012468999999999864 47799999999988652 568999
Q ss_pred EeecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHH
Q 027674 80 QEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAK 157 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~ 157 (220)
||||+ |++++|.++|+++....+.... .++|+|...+..+.. ..+..++++. .++++++|.
T Consensus 180 ee~i~--g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~l~~~~-----~~~i~~~a~ 242 (306)
T 1iow_A 180 EKWLS--GPEFTVAILGEEILPSIRIQPS----------GTFYDYEAKFLSDETQYFCPAGLEASQ-----EANLQALVL 242 (306)
T ss_dssp EECCC--CCEEEEEEETTEECCCEEEECS----------SSSSCHHHHHTCSCCEEESSCCCCHHH-----HHHHHHHHH
T ss_pred EeCcC--CEEEEEEEECCCccceEEEEeC----------CCeEchhheecCCCeeEEcCCCCCHHH-----HHHHHHHHH
Confidence 99996 8999999999986544332211 123333221111100 0122222211 357899999
Q ss_pred HHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 158 ELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 158 ~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
++.++||+. ++++|++++. +| ++|++|||..||+.+.
T Consensus 243 ~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 243 KAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp HHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred HHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 999999997 8899999975 34 6899999999999875
No 18
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.81 E-value=2.2e-19 Score=162.45 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=121.7
Q ss_pred CCCCCCCCcEEEEecCCCC-chHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecC
Q 027674 13 SYGKVDVPRQLVIERDASS-IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVN 84 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~-~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~ 84 (220)
..+||++|++..+++.... ..+. ...++||+||||..++ + |.++.++.++++|.+ .+.++++||||+
T Consensus 160 ~~~GIp~p~~~~~~~~~~~~~~~~--~~~lg~PvvVKP~~gg-s--s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 234 (373)
T 3lwb_A 160 AADGLPVGAYAVLRPPRSTLHRQE--CERLGLPVFVKPARGG-S--SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS 234 (373)
T ss_dssp HHTTCCBCCEEEECTTCCCCCHHH--HHHHCSCEEEEESBCS-T--TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE
T ss_pred HHcCcCCCCEEEEECcccchhHHH--HHhcCCCEEEEeCCCC-C--CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC
Confidence 4578999999999754321 2222 3468999999999964 3 778999999999865 267899999996
Q ss_pred CCCeEEEEEEECCeEEEEEEecCCCCcccccccC--Cc----eeeecCccccccc--CCCCCCCccccCCCChHHHHHHH
Q 027674 85 HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS--AG----VFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLA 156 (220)
Q Consensus 85 h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~--~g----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA 156 (220)
|+++.|.|++++-.. .+.+.+ .++... .+ +|+|..++..+.. ..++.++++. .++++++|
T Consensus 235 --G~E~~v~vl~~~~~~-~~~~~~----~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a 302 (373)
T 3lwb_A 235 --GRELECGVLEMPDGT-LEASTL----GEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQV-----AEAIRQLA 302 (373)
T ss_dssp --EEEEEEEEEECTTSC-EEECCC----EEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHH-----HHHHHHHH
T ss_pred --CeEEEEEEEECCCCc-eEEeee----eEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHH-----HHHHHHHH
Confidence 899999999875210 000100 111111 22 6666655432211 1133333322 46799999
Q ss_pred HHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC-----------CchhHHHHHHHHHHhh
Q 027674 157 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP-----------EYEHIFTDFLLSLTQS 213 (220)
Q Consensus 157 ~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~-----------~~~~~l~~~i~~~~~~ 213 (220)
.++.++||+. ++++|++++. +| + |++|||..||++... +|.+++...|...+++
T Consensus 303 ~~~~~aLg~~G~~~vDf~~~~-dg-~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 368 (373)
T 3lwb_A 303 IRAFAAIDCRGLARVDFFLTD-DG-P-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 368 (373)
T ss_dssp HHHHHHTTCCSEEEEEEEEET-TE-E-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCccEEEEEEEEEC-CC-C-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 9999999996 8889999986 34 6 999999999998754 3344555555555544
No 19
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.81 E-value=3.8e-19 Score=159.31 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=106.5
Q ss_pred CCCCCCCCcEEEEecCCC------CchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEE
Q 027674 13 SYGKVDVPRQLVIERDAS------SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~------~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vv 79 (220)
...||++|++..+++... +..+. ...++||+|+||..++| |.+|.++.++++|..+ +.++++
T Consensus 138 ~~~Gip~p~~~~~~~~~~~~~~~~~~~~~--~~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lv 212 (364)
T 2i87_A 138 EHRGLPQLPYISFLRSEYEKYEHNILKLV--NDKLNYPVFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVI 212 (364)
T ss_dssp HHHTCCCCCEEEEEHHHHHHHHHHHHHHH--HHHCCSSEEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEE
T ss_pred HHCCCCCCCEEEEechhhcccchhHHHHH--HHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEE
Confidence 356899999999964210 11111 23589999999998653 6799999999988752 578999
Q ss_pred EeecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHH
Q 027674 80 QEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAK 157 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~ 157 (220)
||||+ |+++.|.|+|++-. +.+ +. ++.....++|+|..++..+.. ..++.++++. .++++++|.
T Consensus 213 Ee~I~--G~E~~v~vl~~~~~---~~~-~~---~e~~~~~~~~~~~~k~~~g~~~~~~pa~l~~~~-----~~~i~~~a~ 278 (364)
T 2i87_A 213 EQGVN--AREIEVAVLGNDYP---EAT-WP---GEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDV-----QLTLRNMAL 278 (364)
T ss_dssp EECCC--CEEEEEEEEESSSC---EEC-CC---EEECCSCCC-----------CCEESSCSSCHHH-----HHHHHHHHH
T ss_pred EeCcc--CeEEEEEEEcCCCc---EEe-ee---EEEecCCCcCCHHHcccCCCeeEEeCCCCCHHH-----HHHHHHHHH
Confidence 99996 89999999988510 001 11 111112345666554432211 0122222211 457999999
Q ss_pred HHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 158 ELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 158 ~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
++.++||+. ++++|++++. +| ++||+|||..||++...
T Consensus 279 ~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 279 EAFKATDCSGLVRADFFVTE-DN-QIYINETNAMPGFTAFS 317 (364)
T ss_dssp HHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCSTTS
T ss_pred HHHHHcCCCcEEEEEEEEec-CC-CEEEEEEeCCCCCCchh
Confidence 999999996 8889999975 34 69999999999998653
No 20
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.80 E-value=1.4e-18 Score=156.95 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=118.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~h 85 (220)
...||++|++..+++... .+.+....++||+|+||..++ +|.++.++.++++|.+ .+.++++||||+
T Consensus 158 ~~~Gip~p~~~~~~~~~~--~~~~~~~~lg~PvvVKP~~g~---ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~- 231 (367)
T 2pvp_A 158 KDLGIKTLDYVLLNEKNR--ANALDLMNFNFPFIVKPSNAG---SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ- 231 (367)
T ss_dssp HHHTCBCCCCEEECTTTG--GGHHHHCCSCSCEEEEESSCC---TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT-
T ss_pred HHCCcCCCCEEEEeCCch--HHHHHHhccCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC-
Confidence 356899999999964321 111123578999999999864 3678999999998865 256899999995
Q ss_pred CC-eE---EEEEEECCeEEEE-EEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHH
Q 027674 86 GG-VL---FKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKE 158 (220)
Q Consensus 86 ~g-~~---~KV~ViG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~ 158 (220)
| ++ +.|.| ++++.+. .+.. + ..++|+|..++..+.. ..++.++++. .++++++|.+
T Consensus 232 -G~~E~svi~v~v-~g~~~~~~~ei~-~---------~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~ 294 (367)
T 2pvp_A 232 -GVKEYNLAGCKI-KKDFCFSYIEEP-N---------KQEFLDFKQKYLDFSRNKAPKASLSNAL-----EEQLKENFKK 294 (367)
T ss_dssp -TCEEEEEEEEEE-TTEEEEEEEEET-T---------TTEEECCCCSSCCSCCCSCCCCCCCHHH-----HHHHHHHHHH
T ss_pred -CCceeeEEEEEE-CCEEEEEEEEEe-c---------CCceEcccccccCCCeeEEecCCCCHHH-----HHHHHHHHHH
Confidence 7 99 77888 8875433 2322 1 1356777665543211 1122232221 4679999999
Q ss_pred HHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHHHHHHHHHh
Q 027674 159 LRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQ 212 (220)
Q Consensus 159 l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~~~~ 212 (220)
+.++||+. ++++|++++ ++ ++|++|||..||+++..-++ -+.+.+.++++
T Consensus 295 ~~~aLg~~G~~~vDf~~~--~g-~~~vlEiN~rpg~t~~s~~p-~~~~l~~~li~ 345 (367)
T 2pvp_A 295 LYSDLFDGAIIRCDFFVI--EN-EVYLNEINPIPGSLANYLFD-DFKTTLENLAQ 345 (367)
T ss_dssp HHTTTSTTCCEEEEEEEE--TT-EEEEEEEESSCGGGGGGGSS-SHHHHHHHHHH
T ss_pred HHHHcCCCCEEEEEEEEE--CC-eEEEEEEeCCCCCCcccccC-CHHHHHHHHHh
Confidence 99999997 888999998 33 69999999999987544333 33444444443
No 21
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.80 E-value=1.3e-18 Score=154.63 Aligned_cols=158 Identities=20% Similarity=0.342 Sum_probs=110.6
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~h 85 (220)
..+||++|++..+++.. +... ..++||+|+||..++ +|.+|.++.++++|.. .+.++++||||+
T Consensus 141 ~~~Gip~p~~~~~~~~~-~~~~----~~~~~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~- 211 (343)
T 1e4e_A 141 KNAGIATPAFWVINKDD-RPVA----ATFTYPVFVKPARSG---SSFGVKKVNSADELDYAIESARQYDSKILIEQAVS- 211 (343)
T ss_dssp HHTTCBCCCEEEECTTC-CCCG----GGSCSCEEEEESSCC---TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC-
T ss_pred HHCCCCcCCEEEEechh-hhhh----hccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC-
Confidence 35689999999996432 2211 468999999999965 3678999999998865 256899999995
Q ss_pred CCeEEEEEEECCe----EEEEEEecCCCCcccccccCCceeeecCccc----cccc--CCCCCCCccccCCCChHHHHHH
Q 027674 86 GGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC----AAAS--ADDADLDPCVAELPPRPLLERL 155 (220)
Q Consensus 86 ~g~~~KV~ViG~~----v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~l 155 (220)
|+++.|.|++++ +....+.. ...++|+|...+. .+.. ..++.++++ ..++++++
T Consensus 212 -G~E~~v~vl~~~~~~~~~~~~ei~----------~~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~-----~~~~i~~~ 275 (343)
T 1e4e_A 212 -GCEVGCAVLGNSAALVVGEVDQIR----------LQYGIFRIHQEVEPEKGSENAVITVPADLSAE-----ERGRIQET 275 (343)
T ss_dssp -SEEEEEEEEEETTCCEECCCEEEE----------ESSSCCCGGGSSSGGGCCSSEEECSSCSSCHH-----HHHHHHHH
T ss_pred -CeEEEEEEEeCCCCeEEeeeEEEe----------eCCCccCHhhcccccCCCCCeeEEeCCCCCHH-----HHHHHHHH
Confidence 899999999764 21111211 1123566554443 1111 012222221 14679999
Q ss_pred HHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 156 AKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 156 A~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
|.++.++||+. ++++|++++. +| ++|++|||..||++...
T Consensus 276 a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 276 VKKIYKTLGCRGLARVDMFLQD-NG-RIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp HHHHHHHTTCEEEEEEEEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred HHHHHHHcCCceEEEEEEEEeC-CC-CEEEEEeeCCCCCCccc
Confidence 99999999996 8889999975 34 69999999999998653
No 22
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.78 E-value=1.1e-18 Score=170.88 Aligned_cols=186 Identities=13% Similarity=0.180 Sum_probs=120.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeee---Chhhhhc-------cCCCeEEEee
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------LEPPLVLQEF 82 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~---~~~~L~~-------~~~p~vvQef 82 (220)
..+||+||.+.++.+. ++..+.+ ...++||+|+||..|+ .|.||.++. +++++.+ ...++++|||
T Consensus 493 ~~~GIPvP~~~~~~~~-~ea~~~~-~~~~g~PvVVKP~~G~---~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEef 567 (750)
T 3ln6_A 493 DEKHFPTPFGDEFTDR-KEALNYF-SQIQDKPIVVKPKSTN---FGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEY 567 (750)
T ss_dssp HHTTCCCCCCCCEETT-TTHHHHH-HHSSSSCEEEEETTCC---SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred HHCCcCCCCEEEECCH-HHHHHHH-HHhcCCcEEEEeCCCC---CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEec
Confidence 4678999999998742 3343322 2468999999998854 477999998 8888764 2578999999
Q ss_pred cCCCCeEEEEEEECCeEEEEEEecCCCCcccccc--------cC----Cc-----------------------eeeecCc
Q 027674 83 VNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS--------TS----AG-----------------------VFRFPRV 127 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~--------~~----~g-----------------------~~~~~~~ 127 (220)
|+ |++++|+|+||++++++++-.+.+..+... .+ .| .++.+++
T Consensus 568 I~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V 645 (750)
T 3ln6_A 568 IE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSI 645 (750)
T ss_dssp CC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCC
T ss_pred cC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCcccc
Confidence 96 899999999999998765543432111000 00 00 0111111
Q ss_pred cccc---------ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeC------CCCCeEEEEEecCCCC
Q 027674 128 SCAA---------ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREH------GTRDQFYVIDINYFPG 192 (220)
Q Consensus 128 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~------~~~~~~~ViEVN~fPg 192 (220)
...| +.+.++...+ ..-...++++++|.++++++|+.+.|||+++++ ..++.++|||||.-||
T Consensus 646 ~~~Ge~v~L~~~~Nls~Gg~~~d--~td~i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg 723 (750)
T 3ln6_A 646 PPEGTKIELRRNSNISTGGDSID--VTNTMDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPL 723 (750)
T ss_dssp CCTTCEEESCSSCCTTTTCEEEE--CTTTSCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCC
T ss_pred CCCCCEEEEeecccccCCCceee--ccccCCHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCCCeEEEEEcCCcc
Confidence 1111 0111111111 001135679999999999999999999999974 1122579999999999
Q ss_pred CCCC--------CCchhHHHHHH
Q 027674 193 YGKM--------PEYEHIFTDFL 207 (220)
Q Consensus 193 ~~g~--------~~~~~~l~~~i 207 (220)
+.+. .+..+.+++++
T Consensus 724 ~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 724 MYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp CHHHHSCSBSCCCCCHHHHHHHH
T ss_pred hhhhcCcccCCCCcHHHHHHHHh
Confidence 7554 34556666654
No 23
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.78 E-value=1.5e-18 Score=147.73 Aligned_cols=153 Identities=16% Similarity=0.263 Sum_probs=105.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEe
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQe 81 (220)
..+||++|++..+++. .+..+.+ ..++||+|+||..|+ +|+++.++.++++|... +.++++||
T Consensus 97 ~~~gi~~p~~~~~~~~-~~~~~~~--~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe 170 (280)
T 1uc8_A 97 AKAGLPQPKTALATDR-EEALRLM--EAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQE 170 (280)
T ss_dssp HHTTCCCCCEEEESSH-HHHHHHH--HHHCSSEEEECSBCC---BCSHHHHHHHHHC------------CTTTTCEEEEE
T ss_pred HHcCcCCCCeEeeCCH-HHHHHHH--HHhCCCEEEEECCCC---CcccceecccccccchhhhhHhhhcccCCCcEEEEe
Confidence 3568999999998632 2222222 346899999999964 47889999999887542 46899999
Q ss_pred ecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHH
Q 027674 82 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR 161 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~ 161 (220)
||+..+++++++++|++++....+. + ++|..+ ++. ++ ...|. ...++++++|.++.+
T Consensus 171 ~i~~~~~e~~v~v~~~~~~~~~~~~-~----~~~~~~-----~~~---g~------~~~p~----~l~~~~~~~~~~~~~ 227 (280)
T 1uc8_A 171 YVEKPGRDIRVFVVGERAIAAIYRR-S----AHWITN-----TAR---GG------QAENC----PLTEEVARLSVKAAE 227 (280)
T ss_dssp CCCCSSCCEEEEEETTEEEEEEEC---------------------------------CEEC----CCCHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEEECCEEEEEEEEe-c----CCcccc-----ccC---Cc------cccCC----CCCHHHHHHHHHHHH
Confidence 9987689999999999987554332 1 122211 010 11 11111 113579999999999
Q ss_pred HhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 162 QLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 162 ~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
+||+.++++|++++.+ .+|++|||..||+..+.
T Consensus 228 ~lg~g~~~vD~~~~~~---g~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 228 AVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSV 260 (280)
T ss_dssp HTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHH
T ss_pred HhCCCeEEEEEEEeCC---CeEEEEEeCCCCccchh
Confidence 9999999999999863 38999999999998753
No 24
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.76 E-value=1.6e-17 Score=162.63 Aligned_cols=186 Identities=12% Similarity=0.166 Sum_probs=118.4
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceee----eChhhhhcc-------CCCeEEEe
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKKL-------EPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv----~~~~~L~~~-------~~p~vvQe 81 (220)
..+|||||.+..+++. .+..+. ....++||+|+||..|+ +|.||.++ .+++++... +..+++||
T Consensus 498 ~~~GIPvP~~~~~~~~-~ea~~~-~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEe 572 (757)
T 3ln7_A 498 QKAGFNVPQSVEFTSL-EKAVAS-YALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFREDKEVMVED 572 (757)
T ss_dssp HHHTCCCCCEEEESCH-HHHHHG-GGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEE
T ss_pred HHCCcCCCCEEEECCH-HHHHHH-HHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3578999999988631 111111 12468999999999864 47899998 789888652 56899999
Q ss_pred ecCCCCeEEEEEEECCeEEEEEEecCCCCcccc---------------cccCCc--------------------eeeecC
Q 027674 82 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQD---------------LSTSAG--------------------VFRFPR 126 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~---------------~~~~~g--------------------~~~~~~ 126 (220)
||+ |++++|+|+||++++++++..+++.-+. ++...+ .++.++
T Consensus 573 fI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~ 650 (757)
T 3ln7_A 573 YLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDS 650 (757)
T ss_dssp CCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSS
T ss_pred cCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccc
Confidence 994 8999999999999987655434321100 000000 011122
Q ss_pred cccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCC------CCCeEEEEEecCCC
Q 027674 127 VSCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------TRDQFYVIDINYFP 191 (220)
Q Consensus 127 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~------~~~~~~ViEVN~fP 191 (220)
+...|. .+.++...+ ..-...+..+++|.++++++|+.+.|||+++++- .++.+.|||||.-|
T Consensus 651 Vp~~Ge~v~L~~~~Nls~GG~~~d--vtd~i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P 728 (757)
T 3ln7_A 651 IPAKDQLVQLRANSNISTGGDSID--MTDEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNP 728 (757)
T ss_dssp CCCSSCEEECCSSCCGGGTCCEEE--CTTTSCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSC
T ss_pred cCCCCCEEEeecccccccCcccee--ccccCCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccCCCeEEEEEcCCc
Confidence 211111 111111111 1012356789999999999999999999999741 11247999999999
Q ss_pred CCCCC--------CCchhHHHHHH
Q 027674 192 GYGKM--------PEYEHIFTDFL 207 (220)
Q Consensus 192 g~~g~--------~~~~~~l~~~i 207 (220)
|+.+. .+..+.+++++
T Consensus 729 ~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 729 MMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp CHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred chhhhhccccCCCCchHHHHHHHh
Confidence 95544 24455666654
No 25
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.64 E-value=1.7e-15 Score=136.50 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=106.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG 87 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g 87 (220)
...||++|.+..+++. ++..+. ...++||+|+||..++++ +++|.++.++++|..+ +.++++||||+ ++
T Consensus 121 ~~~Gip~p~~~~~~~~-~~~~~~--~~~~g~P~vvKp~~~~~~--g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~ 194 (389)
T 3q2o_A 121 EKAGLPVATYRLVQNQ-EQLTEA--IAELSYPSVLKTTTGGYD--GKGQVVLRSEADVDEARKLANAAECILEKWVP-FE 194 (389)
T ss_dssp HHTTCCCCCEEEESSH-HHHHHH--HHHHCSSEEEEESSCCSS--SCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CS
T ss_pred HHCCCCCCCeEEECCH-HHHHHH--HHhcCCCEEEEeCCCCCC--CCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-Cc
Confidence 3568999999998632 223222 235789999999985433 7899999999998764 46999999997 35
Q ss_pred eEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 027674 88 VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG 164 (220)
Q Consensus 88 ~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lG 164 (220)
+++.|.++++ ++.+. |.. +.....+.+... ..+..++++. .++++++|.++.++||
T Consensus 195 ~E~~v~~~~~~~G~~~~~-----~~~---e~~~~~g~~~~~--------~~p~~l~~~~-----~~~~~~~a~~~~~~lg 253 (389)
T 3q2o_A 195 KEVSVIVIRSVSGETKVF-----PVA---ENIHVNNILHES--------IVPARITEEL-----SQKAIAYAKVLADELE 253 (389)
T ss_dssp EEEEEEEEECTTCCEEEC-----CCE---EEEEETTEEEEE--------EESCSSCHHH-----HHHHHHHHHHHHHHTT
T ss_pred eEEEEEEEEcCCCCEEEe-----cCe---eeEEcCCceEEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcC
Confidence 9999999965 33221 110 000011222111 0122233322 4678999999999999
Q ss_pred Cc-eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 165 LR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 165 l~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+. ++++|++++. +| ++||+|||..||..+
T Consensus 254 ~~G~~~ve~~~~~-dg-~~~viEiNpR~~~s~ 283 (389)
T 3q2o_A 254 LVGTLAVEMFATA-DG-EIYINELAPRPHNSG 283 (389)
T ss_dssp CCEEEEEEEEECT-TS-CEEEEEEESSCCGGG
T ss_pred CeeEEEEEEEEeC-CC-CEEEEEeeCCCCCch
Confidence 98 8889999985 34 699999999999664
No 26
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.58 E-value=7.4e-15 Score=126.59 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=102.0
Q ss_pred CCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeee-Chhhhhc-------c-CCCeEEEeecCCC-C
Q 027674 18 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY-DQYSLKK-------L-EPPLVLQEFVNHG-G 87 (220)
Q Consensus 18 ~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~-~~~~L~~-------~-~~p~vvQefI~h~-g 87 (220)
++|.+..+++ ..+..+.+.. ++ |+|+||..|+ +|+++.++. ++++|.. . ..++++||||+.. +
T Consensus 134 ~~P~t~~~~~-~~~~~~~~~~--~~-p~vvKP~~g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~ 206 (316)
T 1gsa_A 134 LTPETLVTRN-KAQLKAFWEK--HS-DIILKPLDGM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKD 206 (316)
T ss_dssp TSCCEEEESC-HHHHHHHHHH--HS-SEEEECSSCC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGG
T ss_pred cCCCeEEeCC-HHHHHHHHHH--cC-CEEEEECCCC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCC
Confidence 8999998853 1223332322 45 9999999854 578999998 8777653 2 3689999999852 7
Q ss_pred eEEEEEEECCeEEE-E-EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH---
Q 027674 88 VLFKVYIVGEAIKV-V-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ--- 162 (220)
Q Consensus 88 ~~~KV~ViG~~v~~-~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~--- 162 (220)
++++++++|+++.. . .|.+.. ++|.++ ...++. ..|. +..++++++|.++.++
T Consensus 207 ~~~~v~~~~g~~~~~~~~r~~~~----~~~~~~--------~~~gg~------~~~~----~~~~~~~~~a~~~~~~l~~ 264 (316)
T 1gsa_A 207 GDKRVLVVDGEPVPYCLARIPQG----GETRGN--------LAAGGR------GEPR----PLTESDWKIARQIGPTLKE 264 (316)
T ss_dssp CEEEEEEETTEECSEEEEEECCS----SCSCCC--------GGGTCE------EEEE----ECCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEeeeEEEEeCCC----CCceeE--------EccCCc------cccC----CCCHHHHHHHHHHHHHHHh
Confidence 99999999999875 3 454321 122221 111111 1111 1134578888888876
Q ss_pred hCCceeEEEEEEeCCCCCeEEEEEecC-C-CCCCCCC-----CchhHHHHHHHHHH
Q 027674 163 LGLRLFNLDIIREHGTRDQFYVIDINY-F-PGYGKMP-----EYEHIFTDFLLSLT 211 (220)
Q Consensus 163 lGl~l~G~Dvi~~~~~~~~~~ViEVN~-f-Pg~~g~~-----~~~~~l~~~i~~~~ 211 (220)
+|+.++|+|++ | . ||+|||. + |||..+. ++.+++.+++.+.+
T Consensus 265 ~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 265 KGLIFVGLDII-----G-D-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp TTCCEEEEEEE-----T-T-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEec-----C-C-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHHHh
Confidence 59999999998 3 3 7999999 5 5865432 34455555555443
No 27
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.57 E-value=1.8e-14 Score=129.65 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=99.3
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecC
Q 027674 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVN 84 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~ 84 (220)
.+||++|++..+++ .++..+. ...++||+|+||..|+ +|.+|.++.++++|.+. +.++++||||+
T Consensus 119 ~~gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~ 192 (403)
T 4dim_A 119 KYNVNTARHFVVRN-ENELKNA--LENLKLPVIVKATDLQ---GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE 192 (403)
T ss_dssp HHTCCCCCEECCCS-HHHHHHH--HHTSCSSEEEECSCC--------CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC
T ss_pred HcCCCCCCEEEeCC-HHHHHHH--HhcCCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC
Confidence 46899999988753 1222222 3468999999999864 57899999999998752 46899999996
Q ss_pred CCCeEEEEEE--ECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 027674 85 HGGVLFKVYI--VGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 85 h~g~~~KV~V--iG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
|.+|.|.+ .++++....... +... .+.+. .. .+.. .+..++++. .+++.++|.++.++
T Consensus 193 --g~e~sv~~~~~~g~~~~~~~~~--~~~~------~~~~~---~~-~~~~-~p~~l~~~~-----~~~l~~~a~~~~~~ 252 (403)
T 4dim_A 193 --GYEFGAQAFVYKNDVLFVMPHG--DETY------MSHTA---VP-VGHY-VPLDVKDDI-----IEKTKTEVKKAIKA 252 (403)
T ss_dssp --SEEEEEEEEEETTEEEEEEEEE--EEEE------ESSSE---EE-EEEE-ESCCSCHHH-----HHHHHHHHHHHHHH
T ss_pred --CcEEEEEEEEECCEEEEEEEec--ceec------cCCCC---cc-eeEE-eCCCCCHHH-----HHHHHHHHHHHHHH
Confidence 56666544 577776432110 0000 00000 00 0000 122233222 46789999999999
Q ss_pred hCCc--eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC
Q 027674 163 LGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 198 (220)
Q Consensus 163 lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~ 198 (220)
||+. .+++|+++++ + ++|++|+|..||-.+++.
T Consensus 253 lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~~~~~~ 287 (403)
T 4dim_A 253 LGLNNCAVNVDMILKD--N-EVYIIELTGRVGANCLPE 287 (403)
T ss_dssp HTCCSEEEEEEEEEET--T-EEEEEEEESSCCSTTHHH
T ss_pred cCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCCCcHHH
Confidence 9998 5689999973 3 699999999999766543
No 28
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.57 E-value=1.3e-14 Score=129.36 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=101.9
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG 87 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g 87 (220)
..+||++|++..+++. ++..+ ....++||+|+||..++ -+|.++.++.++++|.+. ..++++||||+. |
T Consensus 105 ~~~gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvKp~~~~--~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~~-g 178 (369)
T 3aw8_A 105 QGLGVPTPPFHPVDGP-EDLEE--GLKRVGLPALLKTRRGG--YDGKGQALVRTEEEALEALKALGGRGLILEGFVPF-D 178 (369)
T ss_dssp HHHTCCCCCEEEESSH-HHHHH--HHTTTCSSEEEEECCC--------EEEECSHHHHHHHHTTTCSSSEEEEECCCC-S
T ss_pred HHCCCCCCCceeeCCH-HHHHH--HHHHcCCCEEEEEcCCC--CCcceEEEECCHHHHHHHHHhcCCCcEEEEEcCCC-C
Confidence 3568999999988631 22222 23468999999999854 135789999999998753 468999999963 8
Q ss_pred eEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHh
Q 027674 88 VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQL 163 (220)
Q Consensus 88 ~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~l~~~l 163 (220)
+++.|.++++ ++....+. ..+. ..++++.+- .+.. ++++. .++++++|.++.++|
T Consensus 179 ~e~sv~~~~d~~G~~~~~~~~-------~~~~-~~~~~~~~~--------~p~~~l~~~~-----~~~~~~~a~~~~~~l 237 (369)
T 3aw8_A 179 REVSLLAVRGRTGEVAFYPLV-------ENRH-WGGILRLSL--------APAPGASEAL-----QKKAEAYALRAMEAL 237 (369)
T ss_dssp EEEEEEEEECTTSCEEECCCE-------EEEE-ETTEEEEEE--------ESCTTCCHHH-----HHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCEEEECCe-------eeee-eCCEEEEEE--------CCCCCCCHHH-----HHHHHHHHHHHHHHC
Confidence 9999999974 44422110 0010 112222110 0222 32221 456899999999999
Q ss_pred CCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 164 GLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 164 Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
|+. ++++|++++. + ++|++|+|..||..+.
T Consensus 238 g~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~~ 268 (369)
T 3aw8_A 238 DYVGVLALEFFQVG--E-ELLFNEMAPRVHNSGH 268 (369)
T ss_dssp TCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred CCeeEEEEEEEEEC--C-cEEEEEEeCCcCCccc
Confidence 998 7789999975 3 6999999999997554
No 29
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.57 E-value=2.1e-14 Score=129.38 Aligned_cols=153 Identities=9% Similarity=0.034 Sum_probs=106.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeC--hhhhhc--cCCCeEEEeecCCCCe
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVLQEFVNHGGV 88 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~--~~~L~~--~~~p~vvQefI~h~g~ 88 (220)
...|||||++..+++. ++..+.. ..++||+|+||..+ |+ +++|+.++.+ +++|.+ +. ++++||||+ .++
T Consensus 88 ~~~GIptp~~~~v~~~-~e~~~~~--~~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~-~~~ 160 (355)
T 3eth_A 88 DKLHLPTAPWQLLAER-SEWPAVF--DRLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQGIN-FSG 160 (355)
T ss_dssp HHTTCCBCCEEEECCG-GGHHHHH--HHHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEECCC-CSE
T ss_pred HHCccCCCCEEEECCH-HHHHHHH--HHcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEEccC-CCc
Confidence 3578999999998632 2333322 35799999999984 44 5899999999 998875 24 799999997 479
Q ss_pred EEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 027674 89 LFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 165 (220)
Q Consensus 89 ~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl 165 (220)
++.|.++++ ++.+ +|-. +..+..+.+.+. . .++.++++. .++++++|.++.++||+
T Consensus 161 Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~-------~-~pa~l~~~~-----~~~~~~~a~~i~~aLg~ 219 (355)
T 3eth_A 161 EVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTS-------V-AFPQANAQQ-----QARAEEMLSAIMQELGY 219 (355)
T ss_dssp EEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEE-------E-ECSSCCHHH-----HHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEE-------E-CCCCCCHHH-----HHHHHHHHHHHHHHCCC
Confidence 999999953 3332 1110 111112333211 0 122343332 46789999999999999
Q ss_pred c-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 166 R-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 166 ~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
. ++++|+++++ + ++||+|+|.-|+-.|.
T Consensus 220 ~G~~~vEf~~~~--~-~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 220 VGVMAMECFVTP--Q-GLLINELAPRVHNSGH 248 (355)
T ss_dssp CEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred eeEEEEEEEEEC--C-cEEEEEeeCCCCCCcc
Confidence 7 7889999985 2 6999999999997654
No 30
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.56 E-value=7e-14 Score=127.08 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=100.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------------------C
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------------E 74 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------------------~ 74 (220)
..+||++|.+..+++. .+. ....++||+|+||..|+ +|.||.++.++++|++. +
T Consensus 121 ~~~gip~p~~~~~~~~-~~~----~~~~~g~P~vvKp~~g~---gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~ 192 (425)
T 3vot_A 121 QQNGLNTPVFHEFHTL-ADL----ENRKLSYPLVVKPVNGF---SSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGK 192 (425)
T ss_dssp HHTTCCCCCEEEESSG-GGG----TTCCCCSSEEEEESCC--------CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTC
T ss_pred HHCCCCCCceeccCcH-HHH----HHhhcCCcEEEEECCCC---CCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCC
Confidence 3578999999999632 122 24679999999998854 57899999999998641 4
Q ss_pred CCeEEEeecCCCCeEEEEEEE--CCeEEE--EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChH
Q 027674 75 PPLVLQEFVNHGGVLFKVYIV--GEAIKV--VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRP 150 (220)
Q Consensus 75 ~p~vvQefI~h~g~~~KV~Vi--G~~v~~--~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (220)
.++++||||+ |.+|-|.++ ++++.. ..++.... +.+ +.. .+. ..++.++++. .+
T Consensus 193 ~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~----------~~~-~~~---~~~-~~Pa~l~~~~-----~~ 250 (425)
T 3vot_A 193 TGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK----------GPF-FEE---GVY-IAPAQLKEET-----RL 250 (425)
T ss_dssp CCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC----------CSB-CCC---CEE-EESCCCCHHH-----HH
T ss_pred CcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC----------CCc-ccc---ceE-eecccCCHHH-----HH
Confidence 5899999995 777776555 666543 22322110 000 000 000 0122333322 45
Q ss_pred HHHHHHHHHHHHhCCc--eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC
Q 027674 151 LLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 198 (220)
Q Consensus 151 ~~~~lA~~l~~~lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~ 198 (220)
.+.++|.++.++||+. .+.+|++++. +| ++|++|+|.-||-.+++.
T Consensus 251 ~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~~~ 298 (425)
T 3vot_A 251 AIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGVSH 298 (425)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGHHH
T ss_pred HHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCchH
Confidence 6899999999999984 7789999986 34 689999999998665543
No 31
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.56 E-value=3.1e-14 Score=128.27 Aligned_cols=151 Identities=14% Similarity=0.204 Sum_probs=104.3
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG 87 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g 87 (220)
...||++|.+..+++. ++..+.. ..++||+|+||..+ |+ +|+++.++.++++|.+. +.++++||||+ |
T Consensus 119 ~~~Gip~p~~~~~~~~-~~~~~~~--~~~g~P~vvKp~~g-g~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~--g 191 (377)
T 3orq_A 119 KSAGTKVVPFISVKES-TDIDKAI--ETLGYPFIVKTRFG-GY-DGKGQVLINNEKDLQEGFKLIETSECVAEKYLN--I 191 (377)
T ss_dssp HHTTCCBCCEEEECSS-THHHHHH--HHTCSSEEEEESSS-CC-TTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC--E
T ss_pred HHCCCCCCCeEEECCH-HHHHHHH--HHcCCCEEEEeCCC-CC-CCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC--C
Confidence 3578999999998632 3333322 35899999999885 33 58899999999998753 47999999996 5
Q ss_pred -eEEEEEEE-C--CeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh
Q 027674 88 -VLFKVYIV-G--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL 163 (220)
Q Consensus 88 -~~~KV~Vi-G--~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l 163 (220)
+++.|.++ + +++.+. |-. +.....+.+...- .++.+++ .++++++|.++.++|
T Consensus 192 ~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g~~~~~~--------~Pa~l~~-------~~~~~~~a~~i~~~l 248 (377)
T 3orq_A 192 KKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQILFKTI--------VPARIDK-------TAEAKEQVNKIIQSI 248 (377)
T ss_dssp EEEEEEEEEECGGGCEEEC-----CCE---EEEEETTEEEEEE--------ESCSSCC-------HHHHHHHHHHHHTTS
T ss_pred CEEEEEEEEEeCCCCEEEE-----CCE---eEEEECCEEEEEE--------CCCCCCH-------HHHHHHHHHHHHHHC
Confidence 89999999 3 333321 110 0001112221100 0222221 567999999999999
Q ss_pred CCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 164 GLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 164 Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
|+. ++++|++++.+ | ++||+|||..||-.|
T Consensus 249 g~~G~~~ve~~~~~~-g-~~~v~EinpR~~~sg 279 (377)
T 3orq_A 249 HFIGTFTVEFFIDSN-N-QLYVNEIAPRPHNSG 279 (377)
T ss_dssp CCCEEEEEEEEEETT-C-CEEEEEEESSCCGGG
T ss_pred CCeEEEEEEEEEeCC-C-cEEEEEeeCCcCCCC
Confidence 998 88999999853 3 699999999999444
No 32
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.56 E-value=9e-15 Score=133.10 Aligned_cols=159 Identities=12% Similarity=0.135 Sum_probs=106.4
Q ss_pred CCCCCCCCcEEEEecCC-CCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCC
Q 027674 13 SYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHG 86 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~-~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~ 86 (220)
...||++|++..+..+. ++..+. ...++||+|+||..++ + +|+|+.++.++++|... +.++++||||+ .
T Consensus 132 ~~~Gip~p~~~~~~~~~~~~~~~~--~~~~g~P~VvKp~~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~ 206 (403)
T 3k5i_A 132 RKYGIPMAEHRELVENTPAELAKV--GEQLGYPLMLKSKTMA-Y-DGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-F 206 (403)
T ss_dssp HTTTCCBCCEEEESSCCHHHHHHH--HHHHCSSEEEEESSSC-C-TTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-E
T ss_pred HHCCcCCCCEEEEcCCCHHHHHHH--HHHhCCCEEEEeCCCC-c-CCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-C
Confidence 46789999999996311 122222 2357899999998743 2 47899999999988753 56899999996 3
Q ss_pred CeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCC
Q 027674 87 GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGL 165 (220)
Q Consensus 87 g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~l~~~lGl 165 (220)
|+++.|.++++.-.+ + ..|-. +.....+.+...- .++. ++++. .++++++|.++.++||+
T Consensus 207 ~~E~sv~v~~~~~g~--~-~~p~~---~~~~~~g~~~~~~--------~Pa~~l~~~~-----~~~~~~~a~~i~~~Lg~ 267 (403)
T 3k5i_A 207 KMELAVIVVKTKDEV--L-SYPTV---ETVQEDSICKLVY--------APARNVSDAI-----NQKAQELARKAVAAFDG 267 (403)
T ss_dssp EEEEEEEEEECSSCE--E-ECCCE---EEEEETTEEEEEE--------ESCSSCCHHH-----HHHHHHHHHHHHHTSCC
T ss_pred CeEEEEEEEEcCCCE--E-EeCCe---eeEEeCCEEEEEE--------eCCCCCCHHH-----HHHHHHHHHHHHHHcCC
Confidence 799999999763110 1 11110 1011112222110 1222 33322 45789999999999999
Q ss_pred c-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 166 R-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 166 ~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
. ++++|++++. +| ++||+|||..||..|..
T Consensus 268 ~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~~ 298 (403)
T 3k5i_A 268 KGVFGVEMFLLE-DD-SIMLCEIASRIHNSGHY 298 (403)
T ss_dssp SEEEEEEEEEET-TS-CEEEEEEESSCCGGGTT
T ss_pred eeEEEEEEEEeC-CC-cEEEEEeecCCCCCCce
Confidence 7 7889999985 34 69999999999987543
No 33
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.56 E-value=9.6e-14 Score=124.27 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=100.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-CCCeEEEeecCCCCeEEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-EPPLVLQEFVNHGGVLFK 91 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-~~p~vvQefI~h~g~~~K 91 (220)
+.+||++|++..+++.. + ....++||+|+||..++ -+|.++.++.++++|... +.++++||||+. |+++.
T Consensus 109 ~~~gip~p~~~~~~~~~----~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~el~~~~~~~~lvEe~i~~-g~e~s 179 (380)
T 3ax6_A 109 KKNGIPVPEYKLVKDLE----S--DVREFGFPVVQKARKGG--YDGRGVFIIKNEKDLENAIKGETYLEEFVEI-EKELA 179 (380)
T ss_dssp HHTTCCCCCEEECSSHH----H--HHHTTCSSEEEEESCCC-------EEEECSGGGGGGCCCSSEEEEECCCE-EEEEE
T ss_pred HHcCCCCCCeEEeCCHH----H--HHHhcCCCEEEEecCCC--CCCCCeEEECCHHHHHHHhcCCEEEEeccCC-CeeEE
Confidence 35789999999886321 1 22468999999999853 136799999999999764 478999999963 89999
Q ss_pred EEEECC---eEEEEE-EecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-
Q 027674 92 VYIVGE---AIKVVR-RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR- 166 (220)
Q Consensus 92 V~ViG~---~v~~~~-R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~- 166 (220)
|.++++ ++.... .... + .+..+.++.. . .+..++++. .++++++|.++.++||+.
T Consensus 180 v~~~~~~~G~~~~~~~~~~~--~-----~~~~~~~~~~-------~-~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G 239 (380)
T 3ax6_A 180 VMVARNEKGEIACYPVVEMY--F-----DEDANICDTV-------I-APARIEEKY-----SKIAREIATSVVEALEGVG 239 (380)
T ss_dssp EEEEECSSCCEEEEEEEEEC---------------CEE-------E-ESCSSCHHH-----HHHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCEEEECCeeee--e-----cccCCeeEEE-------E-CCCCCCHHH-----HHHHHHHHHHHHHHCCCeE
Confidence 999964 444321 1111 0 0011122110 0 022232221 457899999999999996
Q ss_pred eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 167 LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 167 l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
++++|++++. +| ++|++|+|..||..+
T Consensus 240 ~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 240 IFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp EEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred EEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 7889999985 34 589999999999755
No 34
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.54 E-value=1.5e-14 Score=132.48 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=102.9
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcC----CCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeec
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAG----LTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~----l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI 83 (220)
...||++|++..+++. ++..+. ... + ||+|+||..+ |+ +|+|+.++.++++|... +.++++||||
T Consensus 142 ~~~Gip~p~~~~v~~~-~e~~~~--~~~~~~~~-~P~VvKp~~~-g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i 215 (419)
T 4e4t_A 142 EASGVPVAPHVVIESA-AALAAL--DDAALDAV-LPGILKTARL-GY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRL 215 (419)
T ss_dssp HHTTCCBCCEEEECSH-HHHHTS--CHHHHHTT-CSEEEEESSS-CC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHcCcCCCCeEEECCH-HHHHHH--HHhhcccc-CCEEEEecCC-CC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecC
Confidence 3578999999998631 111111 123 7 9999999842 33 57899999999998753 4689999999
Q ss_pred CCCCeEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHH
Q 027674 84 NHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~l 159 (220)
+. ++++.|.++++ ++..+ |-. +.....+.+... . .+.. ++++. .++++++|.++
T Consensus 216 ~~-~~Eisv~v~~~~~G~~~~~-----~~~---e~~~~~g~~~~~-------~-~Pa~~l~~~~-----~~~~~~~a~~i 273 (419)
T 4e4t_A 216 PL-KYEVSALIARGADGRSAAF-----PLA---QNVHHNGILALT-------I-VPAPAADTAR-----VEEAQQAAVRI 273 (419)
T ss_dssp CE-EEEEEEEEEECTTSCEEEC-----CCE---EEEEETTEEEEE-------E-ESCTTCCHHH-----HHHHHHHHHHH
T ss_pred CC-CeEEEEEEEEcCCCCEEEE-----eCe---EEEeeCCeEEEE-------E-cCCCCCCHHH-----HHHHHHHHHHH
Confidence 73 79999999954 33211 110 000011222110 0 0222 33322 46789999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
.++||+. ++++|++++. +| ++||+|||..||-.+.
T Consensus 274 ~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~~sg~ 309 (419)
T 4e4t_A 274 ADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPHNSGH 309 (419)
T ss_dssp HHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCCGGGT
T ss_pred HHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCCCCCC
Confidence 9999998 8889999985 34 6999999999996553
No 35
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.52 E-value=1.1e-13 Score=121.76 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=88.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCCCCeEEEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKV 92 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h~g~~~KV 92 (220)
+. ||++|++.. ..++||+|+||..|+ +|.++.++.+ .+.++++||||+ |++++|
T Consensus 119 ~~-Gip~p~~~~--------------~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv 172 (305)
T 3df7_A 119 RG-EVQVPQTSL--------------RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSV 172 (305)
T ss_dssp TT-TSCCCCEES--------------SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEE
T ss_pred Hh-CCCCCCEec--------------ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEE
Confidence 45 899999874 247899999999964 4678888888 567999999996 899999
Q ss_pred EEECC-eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCc-eeE
Q 027674 93 YIVGE-AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLR-LFN 169 (220)
Q Consensus 93 ~ViG~-~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l-Gl~-l~G 169 (220)
.++++ .+....+.. . +.. .+.+. ++. .+..++++. .++++++|.++.++| |+. +++
T Consensus 173 ~v~~g~~~~~~~~~~--~-----~~~---~~~~~----g~~--~p~~l~~~~-----~~~i~~~a~~~~~~l~g~~G~~~ 231 (305)
T 3df7_A 173 SLAVGEDVKCLSVNE--Q-----IIN---NFRYA----GAV--VPARISDEV-----KREVVEEAVRAVECVEGLNGYVG 231 (305)
T ss_dssp EEEESSSEEEEEEEE--E-----EEE---TTEEE----EEE--ESCCCCHHH-----HHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EEEeCCeEEEEEEee--E-----ecc---Cceec----ccc--ccCCCCHHH-----HHHHHHHHHHHHHHcCCCcCceE
Confidence 99954 443322110 0 000 01111 110 122233221 467999999999999 976 778
Q ss_pred EEEEEeCCCCCeEEEEEecCCCCCC
Q 027674 170 LDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 170 ~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
+|++++ + ++|++|||..||..
T Consensus 232 vD~~~~---~-~~~viEiNpR~~~~ 252 (305)
T 3df7_A 232 VDIVYS---D-QPYVIEINARLTTP 252 (305)
T ss_dssp EEEEES---S-SEEEEEEESSCCGG
T ss_pred EEEEEC---C-CEEEEEEcCCCCCC
Confidence 999994 3 48999999999974
No 36
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.51 E-value=2.6e-14 Score=127.14 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------CCCeEEEeecCCC
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNHG 86 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------~~p~vvQefI~h~ 86 (220)
+.+||++|++..++ . ++..+. ...++||+|+||..++ -+|.++.++.++++|.+. +.++++||||+.
T Consensus 101 ~~~gip~p~~~~~~-~-~~~~~~--~~~~~~P~vvKp~~~~--~~g~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~~- 173 (365)
T 2z04_A 101 KKHGFPVPEFLVIK-R-DEIIDA--LKSFKLPVVIKAEKLG--YDGKGQYRIKKLEDANQVVKNHDKEESFIIEEFVKF- 173 (365)
T ss_dssp HTTTCCCCCEEEC------------------CEEEECC--------------------------------CEEEECCCC-
T ss_pred HHcCCCCCCEEEEc-H-HHHHHH--HHhcCCCEEEEEcCCC--cCCCCeEEECCHHHHHHHHHHhccCCCEEEEccCCC-
Confidence 46789999999876 3 233332 2457899999999864 135689999999988753 358999999974
Q ss_pred CeEEEEEEECC---eEEEE-EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 027674 87 GVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 87 g~~~KV~ViG~---~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
|+++.|.++++ ++... .+.. +.. .+.++.. ..|.. + .+.+++++.++.++
T Consensus 174 g~e~sv~~~~d~~G~~~~~~~~~~--------~~~-~~~~~~~-------------~~p~~--~--~~~~~~~~~~~~~~ 227 (365)
T 2z04_A 174 EAEISCIGVRDREGKTYFYPQPFN--------KHE-EGILIYN-------------YVPYA--K--LKEAEEITKRLMEL 227 (365)
T ss_dssp SEEEEEEEEECTTCCEEECCEEEE--------EEE-TTEEEEE-------------EEEEE--C--CHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCCCEEEECCEEE--------EEe-CCEeEEE-------------ECCHh--H--HHHHHHHHHHHHHH
Confidence 89999999963 44321 1100 000 1222211 01110 1 46689999999999
Q ss_pred hCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027674 163 LGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 163 lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
||+. ++++|++++. +| ++|++|+|..||..+..
T Consensus 228 lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~~~~ 261 (365)
T 2z04_A 228 LDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNTGHW 261 (365)
T ss_dssp TTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGGTT
T ss_pred cCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCCceE
Confidence 9997 7789999975 34 58999999999876543
No 37
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.50 E-value=9.2e-14 Score=126.57 Aligned_cols=155 Identities=13% Similarity=0.176 Sum_probs=97.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEe
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQe 81 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..|+ +|.+|.++.++++|... +.++++||
T Consensus 130 ~~~gip~p~~~~~~~~-~~~~~~~--~~~g~P~vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe 203 (433)
T 2dwc_A 130 KEAKVPTSRYMYATTL-DELYEAC--EKIGYPCHTKAIMSS---SGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEE 203 (433)
T ss_dssp HTSCCCCCCEEEESSH-HHHHHHH--HHHCSSEEEEECCC---------EEECSGGGHHHHHHC---------CCEEEEE
T ss_pred HhcCCCCCCeeEeCCH-HHHHHHH--HhcCCCEEEEECCCc---CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEc
Confidence 4678999999988632 2232222 347899999998753 57899999999988642 35899999
Q ss_pred ecCCCCeEEEEEEEC-----CeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHH
Q 027674 82 FVNHGGVLFKVYIVG-----EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLA 156 (220)
Q Consensus 82 fI~h~g~~~KV~ViG-----~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 156 (220)
||+. |+++.|.++. +++....-+...+ ... .+.+. ... .+..++++. .++++++|
T Consensus 204 ~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~-----~~~-~~~~~--~~~------~p~~l~~~~-----~~~i~~~a 263 (433)
T 2dwc_A 204 HIDF-DVEVTELAVRHFDENGEIVTTFPKPVGH-----YQI-DGDYH--ASW------QPAEISEKA-----EREVYRIA 263 (433)
T ss_dssp CCCC-SEEEEECCEEEECTTSCEEEEEECCEEE-----EES-SSSEE--EEE------ESCCCCHHH-----HHHHHHHH
T ss_pred cCCC-CeeEEEEEEecccCCCCEeEEEecccce-----EEE-cCEEE--EEE------cCCCCCHHH-----HHHHHHHH
Confidence 9974 8999999884 3432111111100 000 11111 000 022233221 45689999
Q ss_pred HHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 157 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 157 ~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
.++.++||+. ++++|++++.+ ++|++|+|..||..+.
T Consensus 264 ~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 264 KRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp HHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred HHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 9999999995 77899999853 5899999999996654
No 38
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.49 E-value=6.9e-14 Score=125.18 Aligned_cols=153 Identities=12% Similarity=0.199 Sum_probs=100.4
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEe
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQe 81 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..++ +|.+|.++.++++|... +.++++||
T Consensus 122 ~~~gip~p~~~~~~~~-~~~~~~~--~~~g~P~vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe 195 (391)
T 1kjq_A 122 EELQLPTSTYRFADSE-SLFREAV--ADIGYPCIVKPVMSS---SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEG 195 (391)
T ss_dssp TTSCCCBCCEEEESSH-HHHHHHH--HHHCSSEEEEESCC------CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred HhCCCCCCCeeeeCCH-HHHHHHH--HhcCCCEEEEeCCCC---CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 4678999999988632 2232222 347899999998753 57899999999888642 46899999
Q ss_pred ecCCCCeEEEEEEECC--eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 027674 82 FVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~--~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
||+. |+++.|.++.+ .+... +.. +.... .+.+ .... .+..++++. .++++++|.++
T Consensus 196 ~i~~-g~E~sv~~~~~~~g~~~~-----~~~--~~~~~-~~~~--~~~~------~p~~l~~~~-----~~~~~~~a~~~ 253 (391)
T 1kjq_A 196 VVKF-DFEITLLTVSAVDGVHFC-----APV--GHRQE-DGDY--RESW------QPQQMSPLA-----LERAQEIARKV 253 (391)
T ss_dssp CCCC-SEEEEEEEEEETTEEEEC-----CCE--EEEEE-TTEE--EEEE------ECCCCCHHH-----HHHHHHHHHHH
T ss_pred ecCC-CeEEEEEEEEeCCCeEEc-----cCc--ceEEE-CCEE--EEEE------eCCCCCHHH-----HHHHHHHHHHH
Confidence 9974 89999999853 32211 100 00000 0111 1100 022233221 45689999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
.++||+. ++++|++++.+ ++|++|+|..||..+.
T Consensus 254 ~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 254 VLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp HHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred HHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 9999995 77899999853 5899999999996654
No 39
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.49 E-value=2.5e-13 Score=123.41 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=99.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------C-------CCeEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------E-------PPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------~-------~p~vv 79 (220)
..+||++|++..+++. ++..+. ...++||+|+||..++ +|.+|.++.++++|.+. . .++++
T Consensus 115 ~~~gip~p~~~~~~~~-~e~~~~--~~~~g~PvvvKp~~~~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlv 188 (412)
T 1vkz_A 115 KKYGIRTARFEVAETP-EELREK--IKKFSPPYVIKADGLA---RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVI 188 (412)
T ss_dssp HHTTCCCCCEEEESSH-HHHHHH--HTTSCSSEEEEESSCC---SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEE
T ss_pred HHcCCCCCCEEEECCH-HHHHHH--HHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEE
Confidence 3578999999888631 222222 2468999999999854 57899999999888642 1 28999
Q ss_pred EeecCCCCeEEEEEEEC--CeEEEEEEecCCCCcccccccCCceeeecCcccc---cccCCCCCCCccccCCCChHHHHH
Q 027674 80 QEFVNHGGVLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA---AASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG--~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
||||+ |+++.|.++. +.++...+ ..+. ...+++...... +.. .+..++++. .+++++
T Consensus 189 Ee~i~--G~E~sv~~~~dg~~~~~~~~--~~~~--------~~~~~~~~~~~~g~~~~~-~P~~l~~~~-----~~~i~~ 250 (412)
T 1vkz_A 189 DEFLA--GNELSAMAVVNGRNFVILPF--VRDY--------KRLMDGDRGPNTGGMGSW-GPVEIPSDT-----IKKIEE 250 (412)
T ss_dssp EECCC--SEEEEEEEEEETTEEEECCC--CEEC--------CEEETTTEEEECSCSEEE-ECCCCCHHH-----HHHHHH
T ss_pred EECCc--CcEEEEEEEECCCEEEEeee--eEee--------eeccCCCCCCCCCCceEE-ECCCCCHHH-----HHHHHH
Confidence 99996 8999999983 32222210 0000 001111100000 001 022233222 356899
Q ss_pred HHHHHHHHh-----CC-ceeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027674 155 LAKELRRQL-----GL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 155 lA~~l~~~l-----Gl-~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
+|.++.++| +. .++++|++++. +| +||+|+|..||..+.
T Consensus 251 ~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 251 LFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYNVRLGDPET 295 (412)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEecCCCCCcc
Confidence 999999999 44 35669999985 33 899999999986654
No 40
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.45 E-value=4.5e-13 Score=117.15 Aligned_cols=142 Identities=19% Similarity=0.220 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---CCCeEEEeecCCCCeEE
Q 027674 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---EPPLVLQEFVNHGGVLF 90 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---~~p~vvQefI~h~g~~~ 90 (220)
.+||++|++.... ++..+.+....++||+|+||..|+ +|.++.++.++++|..+ ..++++||||+ |+++
T Consensus 124 ~~gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~---g~~gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~ 195 (331)
T 2pn1_A 124 RQGIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGS---ASIEVRRVETVEEVEQLFSKNTDLIVQELLV--GQEL 195 (331)
T ss_dssp HHTCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC--------------------------CEEEEECCC--SEEE
T ss_pred HcCCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCC---CCCCeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEE
Confidence 5679999986521 122222222478999999999865 47889999999998764 46899999996 7999
Q ss_pred EEEEEC----CeEE-EEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 027674 91 KVYIVG----EAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 165 (220)
Q Consensus 91 KV~ViG----~~v~-~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl 165 (220)
.|.++. +++. ...+..+. ...|.... . . + +..+++.++|.++.++||+
T Consensus 196 ~v~~~~d~~~G~~~~~~~~~~~~--------~~~g~~~~------~-------~-~-----~~~~~~~~~~~~~~~~lg~ 248 (331)
T 2pn1_A 196 GVDAYVDLISGKVTSIFIKEKLT--------MRAGETDK------S-------R-S-----VLRDDVFELVEHVLDGSGL 248 (331)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEE--------EETTEEEE------E-------E-E-----ECCHHHHHHHHHHHTTTCC
T ss_pred EEEEEEecCCCeEEEEEEEEEEE--------ecCCceeE------e-------E-E-----eccHHHHHHHHHHHHHhCC
Confidence 998886 4544 33332210 00111100 0 0 0 1136689999999999999
Q ss_pred c-eeEEEEEEeCCCCCeEEEEEecC-CCCC
Q 027674 166 R-LFNLDIIREHGTRDQFYVIDINY-FPGY 193 (220)
Q Consensus 166 ~-l~G~Dvi~~~~~~~~~~ViEVN~-fPg~ 193 (220)
. ++++|++..+ + ++|++|+|. +||.
T Consensus 249 ~G~~~vd~~~~~--g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 249 VGPLDFDLFDVA--G-TLYLSEINPRFGGG 275 (331)
T ss_dssp CEEEEEEEEEET--T-EEEEEEEESSCCTT
T ss_pred cceEEEEEEEcC--C-CEEEEEEeCCCCCc
Confidence 5 7789999642 3 699999999 5664
No 41
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.44 E-value=9.1e-13 Score=120.49 Aligned_cols=149 Identities=12% Similarity=0.189 Sum_probs=98.6
Q ss_pred CCCCCCCcEE--EEecCCCCc-hHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 14 YGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 14 ~~~I~~P~~~--~i~~~~~~~-~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
.+||++|.+. .+++ .++. .+.+ ..++||+|+||..++ +|.+|.++.++++|.+. +.++
T Consensus 125 ~~gip~p~~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 198 (449)
T 2w70_A 125 KAGVPCVPGSDGPLGD-DMDKNRAIA--KRIGYPVIIKASGGG---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMV 198 (449)
T ss_dssp HHTCCBCSBCSSCCCS-CHHHHHHHH--HHHCSSEEEEETTCC---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCE
T ss_pred HcCCCcCCCcccccCC-HHHHHHHHH--HHhCCcEEEEECCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 4679999986 5542 2222 2222 347899999999864 57899999999888642 5689
Q ss_pred EEEeecCCCCeEEEEEEECC---eEEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPL 151 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~---~v~~~-~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (220)
++||||+ +++++.|.++++ ++... .|. +.. . .....+. .+ +. .++++. .++
T Consensus 199 lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~~~~---~----~~~~~~~---------~~-p~~~l~~~~-----~~~ 255 (449)
T 2w70_A 199 YMEKYLE-NPRHVEIQVLADGQGNAIYLAERDCSMQ---R----RHQKVVE---------EA-PAPGITPEL-----RRY 255 (449)
T ss_dssp EEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEE---E----TTEEEEE---------EE-SCTTCCHHH-----HHH
T ss_pred EEEeccC-CCeEEEEEEEEcCCCCEEEEeceecccc---c----CCcceee---------eC-CcccCCHHH-----HHH
Confidence 9999996 348999999863 44432 231 110 0 0000000 00 11 122221 467
Q ss_pred HHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 027674 152 LERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 152 ~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
+.++|.++.++||+. ++++|++++. + ++|++|+|..|+-.
T Consensus 256 i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R~~~~ 296 (449)
T 2w70_A 256 IGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTRIQVE 296 (449)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECCCCcc
Confidence 899999999999998 5679999986 3 69999999998743
No 42
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.44 E-value=6.6e-13 Score=121.48 Aligned_cols=152 Identities=14% Similarity=0.235 Sum_probs=98.9
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+++ .++..+.+ ..++||+|+||..++ +|.+|.++.++++|... +.++
T Consensus 123 ~~~gip~p~~~~~~~~~-~~~~~~~~--~~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 196 (451)
T 1ulz_A 123 KKAGVPVVPGSDGVLKS-LEEAKALA--REIGYPVLLKATAGG---GGRGIRICRNEEELVKNYEQASREAEKAFGRGDL 196 (451)
T ss_dssp HHTTCCBCCBCSSSCCC-HHHHHHHH--HHHCSSEEEEECSSS---SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCE
T ss_pred HHcCCCCCCCcccccCC-HHHHHHHH--HHcCCCEEEEECCCC---CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 35689999987 4542 12222222 347899999999864 47899999999888642 4689
Q ss_pred EEEeecCCCCeEEEEEEECC---eEEEE-EEecCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~---~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (220)
++||||+ +++++.|.++++ ++... .|.. + +.. .....+. .+ +. .++++. .+++
T Consensus 197 lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~~----~~~~~~~---------~~-P~~~l~~~~-----~~~i 254 (451)
T 1ulz_A 197 LLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-IQR----RNQKLVE---------IA-PSLILTPEK-----REYY 254 (451)
T ss_dssp EEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-EEE----TTEEEEE---------EE-SCSSCCHHH-----HHHH
T ss_pred EEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-ccc----cccccee---------EC-CcccCCHHH-----HHHH
Confidence 9999996 348999999964 34332 2321 0 000 0000000 00 11 122221 4578
Q ss_pred HHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 027674 153 ERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 153 ~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
.++|.++.++||+. .+++|++++. +| ++||+|+|.-|+-.
T Consensus 255 ~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 255 GNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred HHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 99999999999998 4569999985 34 58999999998743
No 43
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.43 E-value=1.1e-12 Score=120.17 Aligned_cols=150 Identities=15% Similarity=0.228 Sum_probs=99.7
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
...||++|.+. .+++ .++..+. ...++||+|+||..|+ +|.+|.++.++++|.+. +.++
T Consensus 128 ~~~Gip~p~~~~~~~~~-~~e~~~~--~~~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 201 (446)
T 3ouz_A 128 QRAGVPVIPGSDGALAG-AEAAKKL--AKEIGYPVILKAAAGG---GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTM 201 (446)
T ss_dssp HHTTCCBCSBCSSSCCS-HHHHHHH--HHHHCSSEEEEETTCC---TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCE
T ss_pred HHcCCCcCCCcccCCCC-HHHHHHH--HHHhCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 35689999987 4432 1223222 2357899999999854 57899999999998652 5789
Q ss_pred EEEeecCCCCeEEEEEEECC---eEEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPL 151 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~---~v~~~-~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (220)
++||||+ +.+++.|.++++ +++.. .|. +... .+.. ....+ +. .++++. .++
T Consensus 202 lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~--------------~~~~--~~~~~-p~~~l~~~~-----~~~ 258 (446)
T 3ouz_A 202 YMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQR--------------RHQK--LIEES-PAILLDEKT-----RTR 258 (446)
T ss_dssp EEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEE--------------TTEE--EEEEE-SCTTSCHHH-----HHH
T ss_pred EEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeee--------------cCce--EEEEC-CCCCCCHHH-----HHH
Confidence 9999996 238999999965 33322 232 1100 0000 00000 11 222221 467
Q ss_pred HHHHHHHHHHHhCCce-eEEEEEEeCCCCCeEEEEEecCCCCC
Q 027674 152 LERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 152 ~~~lA~~l~~~lGl~l-~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
+.++|.++.++||+.- +++|++++.+ | ++|++|||.-|+-
T Consensus 259 l~~~a~~~~~~lg~~G~~~ve~~~~~~-g-~~~~iEiNpR~~g 299 (446)
T 3ouz_A 259 LHETAIKAAKAIGYEGAGTFEFLVDKN-L-DFYFIEMNTRLQV 299 (446)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCCT
T ss_pred HHHHHHHHHHHcCCCCceEEEEEEeCC-C-CEEEEEeECCCCC
Confidence 8999999999999984 5599999863 3 6999999999974
No 44
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.42 E-value=1.1e-12 Score=118.84 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=94.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..++ +|.+|.++.++++|... ..++++||||
T Consensus 110 ~~~gip~p~~~~~~~~-~~~~~~~--~~~~~P~vvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i 183 (417)
T 2ip4_A 110 ERYGIPTARYRVFREP-LEALAYL--EEVGVPVVVKDSGLA---AGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYL 183 (417)
T ss_dssp HHTCCCBCCEEEESSH-HHHHHHH--HHHCSSEEEECTTSC---SSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECC
T ss_pred HHcCCCCCCeeeeCCH-HHHHHHH--HHcCCCEEEEECCCC---CCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECc
Confidence 3578999999988631 2232222 247899999998854 57899999999988642 2689999999
Q ss_pred CCCCeEEEEEEEC--CeEEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH-HHHHHH
Q 027674 84 NHGGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL-ERLAKE 158 (220)
Q Consensus 84 ~h~g~~~KV~ViG--~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lA~~ 158 (220)
+ |+++.|.++. +.++.. .|..-+.. +. ...+++.. . +.. .+..++++. .+.+ ++++.+
T Consensus 184 ~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~---~~---~~~~~~g~--~-~~~-~p~~l~~~~-----~~~~~~~~~~~ 246 (417)
T 2ip4_A 184 E--GEEATVLALTDGETILPLLPSQDHKRLL---DG---DQGPMTGG--M-GAV-APYPMDEAT-----LRRVEEEILGP 246 (417)
T ss_dssp C--SCEEEEEEEESSSCEEECCCBEECCEEE---TT---TEEEECSC--S-EEE-ESCCCCHHH-----HHHHHHHTHHH
T ss_pred c--CcEEEEEEEEeCCEEEEcchheechhhc---cC---CCCCcCCC--C-eee-eCCCCCHHH-----HHHHHHHHHHH
Confidence 6 8899999983 333322 12110000 00 00001000 0 000 011122211 2334 556777
Q ss_pred HHHHh---CCc---eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 159 LRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 159 l~~~l---Gl~---l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+.++| |+. ++++|++++. +| +|++|+|..||-.+
T Consensus 247 ~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 286 (417)
T 2ip4_A 247 LVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDPE 286 (417)
T ss_dssp HHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTTH
T ss_pred HHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCcH
Confidence 77776 554 4669999975 34 89999999999543
No 45
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.41 E-value=1.4e-12 Score=119.35 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=98.4
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+++ .++..+.+ ..++||+|+||..++ +|.+|.++.++++|... +.++
T Consensus 123 ~~~gip~p~~~~~~~~~-~~~~~~~~--~~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 196 (451)
T 2vpq_A 123 IKANVPVVPGSDGLMKD-VSEAKKIA--KKIGYPVIIKATAGG---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGL 196 (451)
T ss_dssp HHTTCCBCSBCSSCBSC-HHHHHHHH--HHHCSSEEEEETTCC---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCE
T ss_pred HHcCCCcCCCcccCcCC-HHHHHHHH--HhcCCcEEEEECCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 35689998876 5542 12222222 347899999999864 57899999999888642 4689
Q ss_pred EEEeecCCCCeEEEEEEECC---eEEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPL 151 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~---~v~~~-~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 151 (220)
++||||+ +++++.|.++++ ++... .|. +... .....+. .+ +.. ++++. .++
T Consensus 197 lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~~-------~~~~~~~---------~~-P~~~l~~~~-----~~~ 253 (451)
T 2vpq_A 197 YMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQR-------RMQKLVE---------EA-PSPILDDET-----RRE 253 (451)
T ss_dssp EEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEEE-------TTEEEEE---------EE-SCTTCCHHH-----HHH
T ss_pred EEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchhc-------cccceEE---------Ec-CCCCCCHHH-----HHH
Confidence 9999996 238999988864 44433 221 1100 0000000 00 111 22221 457
Q ss_pred HHHHHHHHHHHhCCce-eEEEEEEeCCCCCeEEEEEecCCCCCC
Q 027674 152 LERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 152 ~~~lA~~l~~~lGl~l-~G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
++++|.++.++||+.- +++|++++..+| ++||+|+|.-|+-.
T Consensus 254 i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 254 MGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRIQVE 296 (451)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCCCCCc
Confidence 8999999999999994 569999982234 69999999999744
No 46
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.41 E-value=1.7e-12 Score=119.23 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=99.0
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+++ .++..+.+ ..++||+|+||..++ +|.+|.++.++++|... +.++
T Consensus 129 ~~~Gip~p~~~~~~~~~-~~~~~~~~--~~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 202 (461)
T 2dzd_A 129 VNAGIPVIPGSDGPVDG-LEDVVAFA--EAHGYPIIIKAALGG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEV 202 (461)
T ss_dssp HHTTCCBCCBCSSCCSS-HHHHHHHH--HHHCSCEEEEESTTC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCE
T ss_pred HHcCCCCCCCcccCcCC-HHHHHHHH--HhcCCcEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 35689999987 4542 12222222 347899999999864 57899999999988642 4689
Q ss_pred EEEeecCCCCeEEEEEEECC---eEEE-EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGE---AIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~---~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
++||||+ +++++.|.++++ +++. ..|.. + . +......+. .+....++++. .+++.
T Consensus 203 lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~----~~~~~~~~~---------~~P~~~l~~~~-----~~~i~ 261 (461)
T 2dzd_A 203 YVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-S-V----QRRHQKVVE---------VAPSVSLSDEL-----RQRIC 261 (461)
T ss_dssp EEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-E-E----EETTEEEEE---------EESCTTSCHHH-----HHHHH
T ss_pred EEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-c-c----cccccceEE---------ECCcccCCHHH-----HHHHH
Confidence 9999996 358999999864 3443 22311 0 0 000000000 00011222221 46789
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027674 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++|.++.+++|+..++ +|++++. + ++|++|+|.-|+.
T Consensus 262 ~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~~~ 299 (461)
T 2dzd_A 262 EAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRIQV 299 (461)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSCCG
T ss_pred HHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCCCC
Confidence 9999999999999765 9999985 3 6999999999974
No 47
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.41 E-value=1.1e-12 Score=116.76 Aligned_cols=119 Identities=27% Similarity=0.505 Sum_probs=80.1
Q ss_pred CCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCCCCeEEEEEEECCe--EEEE--EEecCCCCccccc
Q 027674 40 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA--IKVV--RRFSLPDVTKQDL 115 (220)
Q Consensus 40 ~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h~g~~~KV~ViG~~--v~~~--~R~slp~~~~~~~ 115 (220)
.++||+|+||..|+ ++.+|.++.|++++......+++|||| .|+.+.|.++++. ..+. .+...+
T Consensus 123 ~ig~P~vvKp~~g~---g~~gv~~v~~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~~~~~~~~~~------- 190 (363)
T 4ffl_A 123 PSKPPYFVKPPCES---SSVGARIIYDDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAVVKETLVHID------- 190 (363)
T ss_dssp CSSSCEEEECSSCC---TTTTCEEEC------CCCTTCEEEECC--CSEEEEEEEEEESSCEEECCCEEEEEC-------
T ss_pred ecCCCEEEEECCCC---CCcCeEEeccHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEEEEEEEeccC-------
Confidence 47899999998854 478999999999999999999999999 5899999998543 2211 011000
Q ss_pred ccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecC-CCCC
Q 027674 116 STSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINY-FPGY 193 (220)
Q Consensus 116 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~-fPg~ 193 (220)
+...+. ...+.+..++++++|.++.++||+. .+++|++++++ .+||+|+|. |||.
T Consensus 191 ---------~~~~~~-----------~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~~---~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 191 ---------ETYDCH-----------MVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGPK---GLRVIEIDARFPSQ 247 (363)
T ss_dssp ---------TTSCEE-----------EEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEETT---EEEEEEEECSCCSS
T ss_pred ---------Ccccce-----------eecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeCC---eEEEEEEeCCCCCC
Confidence 000000 0011123467899999999999998 66799999852 589999999 6774
No 48
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.40 E-value=1.3e-12 Score=118.53 Aligned_cols=154 Identities=12% Similarity=0.116 Sum_probs=94.7
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..++ +|++|.++.++++|.+. +.++++
T Consensus 111 ~~~gip~p~~~~~~~~-~~~~~~~--~~~~~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lv 184 (424)
T 2yw2_A 111 KKYGIPTARYEVFTDF-EKAKEYV--EKVGAPIVVKADGLA---AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVI 184 (424)
T ss_dssp HHTTCCBCCEEEESCH-HHHHHHH--HHHCSSEEEEESSCC---TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEE
T ss_pred HHcCCCCCCeEEECCH-HHHHHHH--HHcCCcEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEE
Confidence 3568999999988531 2233322 347899999998853 57899999999988642 258999
Q ss_pred EeecCCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCccc-c--cccCCCCC-CCccccCCCChHH
Q 027674 80 QEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSC-A--AASADDAD-LDPCVAELPPRPL 151 (220)
Q Consensus 80 QefI~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~~ 151 (220)
||||+ |+++.|.++ |+.++.. .|.. ...+++..... . +.. .+.. ++++. .+.
T Consensus 185 Ee~i~--g~E~sv~~~~~G~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~-~p~~~l~~~~-----~~~ 244 (424)
T 2yw2_A 185 EEFLE--GEEASYIVMINGDRYVPLPTSQDH------------KRLLDEDKGPNTGGMGAY-SPTPVINEEV-----EKR 244 (424)
T ss_dssp EECCC--SEEEEEEEEEETTEEEECCCBEEC------------CEEETTTEEEECSCSEEE-ESCTTSCHHH-----HHH
T ss_pred EECCC--CcEEEEEEEEcCCEEEeecceeec------------cccccCCCCCCCCCCeeE-CCCccCCHHH-----HHH
Confidence 99996 899999888 4433321 1211 00111100000 0 000 0111 22211 233
Q ss_pred H-HHHHHHHHHHh---CCce---eEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 152 L-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 152 ~-~~lA~~l~~~l---Gl~l---~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+ ++++.++.++| |+.+ +++|++++. +| +|++|+|..||-.+
T Consensus 245 ~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 245 IREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG--PKVLEFNVRLGDPE 292 (424)
T ss_dssp HHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 4 46777777776 5554 559999985 33 89999999999443
No 49
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=2.2e-12 Score=120.12 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=98.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------------
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------------- 73 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------------------- 73 (220)
..+||++|++..+++. ++..+. ...++||+|+||..|+ +|.||.++.++++|.+.
T Consensus 148 ~~~GIpvp~~~~v~s~-ee~~~~--~~~lg~PvVVKP~~g~---gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~ 221 (474)
T 3vmm_A 148 NKAGVKSIKNKRVTTL-EDFRAA--LEEIGTPLILKPTYLA---SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTF 221 (474)
T ss_dssp HHTTSCCCCEEEECSH-HHHHHH--HHHSCSSEEEEESSCC---TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCC
T ss_pred HHcCCCCCCeEEECCH-HHHHHH--HHHcCCCEEEEECCCC---cCceEEEECCHHHHHHHHHHHHHHHhhccccccccC
Confidence 3578999999888632 222222 3468999999999864 47799999999887532
Q ss_pred CCCeEEEeecCCCC------------eEEEEEEECCeEEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCCC
Q 027674 74 EPPLVLQEFVNHGG------------VLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADL 139 (220)
Q Consensus 74 ~~p~vvQefI~h~g------------~~~KV~ViG~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 139 (220)
..++++||||+..- ..+.+++.+++.... .++. +.. .. ... ... .++.+
T Consensus 222 ~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~-~~~---~~---------~~~---~~~-~Pa~l 284 (474)
T 3vmm_A 222 EAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKT-PQI---GF---------TET---SHI-TPSIL 284 (474)
T ss_dssp SCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEEC-CCB---TT---------BCC---EEE-ESCCC
T ss_pred CCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeec-cCC---Cc---------cce---EEE-ECCCC
Confidence 35899999997321 224446667775432 1221 110 00 000 000 02223
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCCceeE--EEEEEeCCCCCeEEEEEecCCCC
Q 027674 140 DPCVAELPPRPLLERLAKELRRQLGLRLFN--LDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G--~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+++. .+.+.++|.++.+++|+.-.+ +|++++. +| ++|++|+|.-||
T Consensus 285 ~~~~-----~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 285 DEEA-----KKKIVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp CHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred CHHH-----HHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 3222 467999999999999999766 9999986 34 699999998776
No 50
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.39 E-value=4.9e-12 Score=110.17 Aligned_cols=152 Identities=19% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc----------C--CCeEEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----------E--PPLVLQ 80 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~----------~--~p~vvQ 80 (220)
..+||++|.+ +++ . ..+.||+|+||..|+ +|.++.++.++++|..+ . .++++|
T Consensus 109 ~~~gip~p~~--~~~----~------~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lve 173 (334)
T 2r85_A 109 KKAGIRVPEV--YED----P------DDIEKPVIVKPHGAK---GGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQ 173 (334)
T ss_dssp HHTTCCCCCB--CSC----G------GGCCSCEEEEECC-------TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEE
T ss_pred HHcCCCCCCc--cCC----h------HHcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEE
Confidence 3567999998 321 1 126799999999864 47899999999888642 2 689999
Q ss_pred eecCCCCeEEEEEE----ECCeEEE---EEEecCCCCccccccc--CCceeee---cCcccccccCCCCCCCccccCCCC
Q 027674 81 EFVNHGGVLFKVYI----VGEAIKV---VRRFSLPDVTKQDLST--SAGVFRF---PRVSCAAASADDADLDPCVAELPP 148 (220)
Q Consensus 81 efI~h~g~~~KV~V----iG~~v~~---~~R~slp~~~~~~~~~--~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 148 (220)
|||+ |..+.+.+ +++++.. ..|.... .+.+.. ....+.. +...-.+.. +..++++ .
T Consensus 174 e~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~--p~~l~~~-----~ 241 (334)
T 2r85_A 174 EYVL--GVPVYPHYFYSKVREELELMSIDRRYESN---VDAIGRIPAKDQLEFDMDITYTVIGNI--PIVLRES-----L 241 (334)
T ss_dssp ECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEE---GGGGGGSCHHHHTTSCCCCCEEEEEEE--ECCCCGG-----G
T ss_pred eccC--CceeEEEEeecCcCceeeeeeeccEEEec---cCcccccccccccccccCCceeeeCCC--CcccCHH-----H
Confidence 9995 77776322 2232211 1121110 000000 0000000 000000000 2223222 2
Q ss_pred hHHHHHHHHHHHHHh-----CCc-eeEEEEEEeCCCCCeEEEEEecCCCCC
Q 027674 149 RPLLERLAKELRRQL-----GLR-LFNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 149 ~~~~~~lA~~l~~~l-----Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
.++++++|.++.++| +.. ++++|++++. +| ++|++|||..||-
T Consensus 242 ~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 242 LMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSCCG
T ss_pred HHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCcCC
Confidence 567999999999999 555 7789999975 33 5899999999996
No 51
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.38 E-value=1.5e-12 Score=124.48 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=88.8
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecCCCCeEEEEEEECCe---EEE-EEEe
Q 027674 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF 105 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~h~g~~~KV~ViG~~---v~~-~~R~ 105 (220)
..++||+|+||..|+ +|.||.++.++++|.+. +.++++||||+ +++.+.|-|++|. ++. ..|.
T Consensus 241 ~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D~~G~vv~l~~rd 316 (587)
T 3jrx_A 241 ERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRD 316 (587)
T ss_dssp HHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECSSSCEEEEEEEE
T ss_pred HhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 458999999999865 47899999999998652 56899999996 3499999999864 333 2332
Q ss_pred -cCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCce-eEEEEEEeCCCCCeE
Q 027674 106 -SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQF 182 (220)
Q Consensus 106 -slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~l~~~lGl~l-~G~Dvi~~~~~~~~~ 182 (220)
++.. .+.+... .+ ++. ++++. .+++.++|.++.+++|+.- +.+|++++. +| ++
T Consensus 317 ~siqr--------------r~qk~ie--~a-Pa~~l~~~~-----~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG-~~ 372 (587)
T 3jrx_A 317 CSIQR--------------RHQKIVE--EA-PATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SF 372 (587)
T ss_dssp EEEES--------------SSCEEEE--EE-SCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECS-SS-CE
T ss_pred ccccc--------------cccceeE--ec-CCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEeC-CC-CE
Confidence 2110 0110000 00 111 22222 4679999999999999974 459999975 34 69
Q ss_pred EEEEecCCCCC
Q 027674 183 YVIDINYFPGY 193 (220)
Q Consensus 183 ~ViEVN~fPg~ 193 (220)
|++|+|.-|+-
T Consensus 373 yflEINpRl~~ 383 (587)
T 3jrx_A 373 HFLELNPRLQV 383 (587)
T ss_dssp EEEEEESSCCT
T ss_pred EEEEEeCCCCC
Confidence 99999999984
No 52
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.37 E-value=1.6e-12 Score=122.95 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=85.7
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecCCCCeEEEEEEECCe---EEE-EEEe
Q 027674 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF 105 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~h~g~~~KV~ViG~~---v~~-~~R~ 105 (220)
..++||+|+||..|+ +|.||.++.++++|... +.++++||||+ +++.+.|-+++|. ++. ..|.
T Consensus 225 ~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d~~G~vv~l~~rd 300 (540)
T 3glk_A 225 ERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRD 300 (540)
T ss_dssp HHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEecee
Confidence 458999999999865 47899999999998652 56899999995 2399999999863 333 2332
Q ss_pred -cCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeE
Q 027674 106 -SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQF 182 (220)
Q Consensus 106 -slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~ 182 (220)
++.. .+.+... .+ ++. ++++. .+++.++|.++.+++|+. .+++|++++. +| ++
T Consensus 301 ~s~qr--------------~~~k~ie--~~-Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~VEf~~d~-dg-~~ 356 (540)
T 3glk_A 301 CSIQR--------------RHQKIVE--EA-PATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SF 356 (540)
T ss_dssp EEEC-----------------CCSEE--EE-SCTTSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CE
T ss_pred eeeee--------------cccceEE--ec-CCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CE
Confidence 2111 0110000 00 111 22222 467999999999999997 4559999985 34 69
Q ss_pred EEEEecCCCCCC
Q 027674 183 YVIDINYFPGYG 194 (220)
Q Consensus 183 ~ViEVN~fPg~~ 194 (220)
|++|+|.-|+-.
T Consensus 357 ~~lEiNpR~~~~ 368 (540)
T 3glk_A 357 HFLELNPRLQVE 368 (540)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEEECCCCCc
Confidence 999999999843
No 53
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.37 E-value=1.8e-12 Score=119.33 Aligned_cols=151 Identities=9% Similarity=0.083 Sum_probs=95.6
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEEE
Q 027674 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQ 80 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vvQ 80 (220)
.+|||+|.+..+++ .++..+.+ ..++||+|+||..++ +|.++.++.+++++.+. ..++++|
T Consensus 133 ~~GIp~p~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvE 206 (442)
T 3lp8_A 133 RYGIPTAKYGYFVD-TNSAYKFI--DKHKLPLVVKADGLA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIE 206 (442)
T ss_dssp HHTCCBCCEEEESS-HHHHHHHH--HHSCSSEEEEESSCC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEE
T ss_pred HCCCCCCCEEEECC-HHHHHHHH--HHcCCcEEEeECCCC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEE
Confidence 46899999998863 22233322 348999999998743 57899999999988642 2589999
Q ss_pred eecCCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCcccc---cccCCCCC-CCccccCCCChHHH
Q 027674 81 EFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCA---AASADDAD-LDPCVAELPPRPLL 152 (220)
Q Consensus 81 efI~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~ 152 (220)
|||+ |+++.|.++ |+.++.. .|.- . ..+++...... +... +.. ++++. .+.+
T Consensus 207 e~i~--G~E~sv~~~~dg~~~~~~~~~~~~-~-----------~~~~~~~g~~~gg~g~~~-P~~~l~~~~-----~~~i 266 (442)
T 3lp8_A 207 EFLE--GKEISFFTLVDGSNPVILGVAQDY-K-----------TIGDNNKGPNTGGMGSYS-KPNIITQEM-----EHII 266 (442)
T ss_dssp ECCC--SEEEEEEEEEESSCEEEEEEEEEC-C-----------EEEGGGEEEECSCSEEEE-CTTSSCHHH-----HHHH
T ss_pred Eeec--CcEEEEEEEECCCeEEEeEEeEee-e-----------ecccCCCCCCCCCcEEEe-eCCCCCHHH-----HHHH
Confidence 9996 899999998 3344322 1211 0 01111110000 0111 111 22221 2345
Q ss_pred HHH----HHHHHHHhCCceeE---EEEEEeCCCCCeEEEEEecCCCCC
Q 027674 153 ERL----AKELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 153 ~~l----A~~l~~~lGl~l~G---~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
.+. +.++.+++|+.+.| +|++++. +| ++|+|+|..||-
T Consensus 267 ~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~ 311 (442)
T 3lp8_A 267 IQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE--PKLLEYNVRFGD 311 (442)
T ss_dssp HHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCT
T ss_pred HHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEecCCCC
Confidence 554 67777899996554 9999985 33 899999999994
No 54
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.37 E-value=2.8e-12 Score=116.20 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..++ +|.++.++.+++++... ..++++
T Consensus 111 ~~~gip~p~~~~~~~~-~~~~~~~--~~~~~P~vvKp~~~~---~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lv 184 (422)
T 2xcl_A 111 KKYDIPTAEYETFTSF-DEAKAYV--QEKGAPIVIKADGLA---AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVI 184 (422)
T ss_dssp HHTTCCBCCEEEESCH-HHHHHHH--HHHCSSEEEEESSCG---GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEE
T ss_pred HHcCCCCCCeEEECCH-HHHHHHH--HhcCCCEEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEE
Confidence 3578999999988631 2233322 347899999998853 57899999999888642 268999
Q ss_pred EeecCCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCccc-c--cccCCCCC-CCccccCCCChHH
Q 027674 80 QEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSC-A--AASADDAD-LDPCVAELPPRPL 151 (220)
Q Consensus 80 QefI~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~~ 151 (220)
||||+ |+++.|.++ |+.++.. .|.. ...+++..... . +... +.. ++++. .+.
T Consensus 185 Ee~i~--g~E~sv~~~~dG~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~-p~~~l~~~~-----~~~ 244 (422)
T 2xcl_A 185 EEYLS--GEEFSLMAFVKGEKVYPMVIAQDH------------KRAFDGDKGPNTGGMGAYS-PVPQISEET-----VRH 244 (422)
T ss_dssp EECCC--SEEEEEEEEEETTEEEECCCBEEE------------EEEEGGGEEEEEEEEEEEE-SCTTSCHHH-----HHH
T ss_pred EECCc--CcEEEEEEEEcCCEEEecceeeee------------ehhcCCCCCCCCCCCeeEc-cCCCCCHHH-----HHH
Confidence 99996 899999988 4433321 1110 00111000000 0 0010 111 22211 223
Q ss_pred H-HHHHHHHHHHh---CCce---eEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 152 L-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 152 ~-~~lA~~l~~~l---Gl~l---~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+ ++++.++.+.| |+.+ +++|++++. +| +||+|+|..||-.+
T Consensus 245 ~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g--~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 245 AVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG--SKVIEFNARFGDPE 292 (422)
T ss_dssp HHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC--cEEEEEecCCCCcH
Confidence 3 34777777775 6654 568999985 33 89999999999655
No 55
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.36 E-value=2.2e-12 Score=118.36 Aligned_cols=157 Identities=13% Similarity=0.027 Sum_probs=95.2
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+|||+|++..+++ .++..+.+ ..++||+|+||..++ +|.++.++.+++++.+. ..++++
T Consensus 116 ~~~GIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlv 189 (431)
T 3mjf_A 116 ARHNIPSAEYQNFTD-VEAALAYV--RQKGAPIVIKADGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVV 189 (431)
T ss_dssp HHTTCSBCCEEEESC-HHHHHHHH--HHHCSSEEEEESSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEE
T ss_pred HHcCCCCCCeEeeCC-HHHHHHHH--HHcCCeEEEEECCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEE
Confidence 357899999998863 12233322 347899999998743 57899999999888642 248999
Q ss_pred EeecCCCCeEEEEEEECC--eEEEEEEecCCCCcccccccCCceeeecCcccc---cccCCCCC-CCccccCCCChHHHH
Q 027674 80 QEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA---AASADDAD-LDPCVAELPPRPLLE 153 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~--~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 153 (220)
||||+ |+++.|.++.| +++.. +... +. ...+++...... +... +.. ++++. .+.+.
T Consensus 190 Ee~i~--G~E~sv~~~~dg~~~~~~-----~~~~--~~---~~~~~~~~g~~~gg~g~~~-P~~~l~~~~-----~~~i~ 251 (431)
T 3mjf_A 190 EEFLD--GEEASFIVMVDGENVLPM-----ATSQ--DH---KRVGDGDTGPNTGGMGAYS-PAPVVTDDV-----HQRVM 251 (431)
T ss_dssp EECCC--SEEEEEEEEEESSCEEEC-----CCBE--EC---CEEETTTEEEECSCSEEEE-SCTTSCHHH-----HHHHH
T ss_pred EEeeC--CcEEEEEEEEcCCEEEEE-----EeeE--ec---eecccCCCCCCCCCceEEe-eCCCCCHHH-----HHHHH
Confidence 99996 89999999943 44321 1000 00 011111111000 0010 111 22211 22333
Q ss_pred HH----HHHHHHHhCCceeE---EEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 154 RL----AKELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 154 ~l----A~~l~~~lGl~l~G---~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+. +.++.+++|+.+.| +|++++. +| +++|+|+|..||...
T Consensus 252 ~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~~~ 298 (431)
T 3mjf_A 252 DQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGDPE 298 (431)
T ss_dssp HHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGSTTT
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCCcH
Confidence 32 45666788986554 9999985 34 589999999999443
No 56
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.35 E-value=3.1e-12 Score=120.78 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=87.9
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecCCCCeEEEEEEECC---eEEEE-EEe
Q 027674 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF 105 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~h~g~~~KV~ViG~---~v~~~-~R~ 105 (220)
..++||+|+||..++ +|.+|.++.++++|... ..++++||||+ +++.+.|.++++ +++.. .|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 357999999999864 57899999999998752 46899999997 469999999975 34432 231
Q ss_pred -cCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeE
Q 027674 106 -SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQF 182 (220)
Q Consensus 106 -slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~ 182 (220)
++.. ++.+... .+ +.. ++++. .+++.++|.++.++||+. .+++|++++..+| ++
T Consensus 307 ~~~~~--------------~~~k~~~--~~-P~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~ 363 (554)
T 1w96_A 307 CSVQR--------------RHQKIIE--EA-PVTIAKAET-----FHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KF 363 (554)
T ss_dssp EEEEE--------------TTEEEEE--EE-SCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CE
T ss_pred eeeEe--------------eccceee--eC-CCcCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CE
Confidence 2110 0000000 00 111 22221 467899999999999996 6679999973234 58
Q ss_pred EEEEecCCCCCC
Q 027674 183 YVIDINYFPGYG 194 (220)
Q Consensus 183 ~ViEVN~fPg~~ 194 (220)
|++|+|.-||-.
T Consensus 364 ~~iEiN~R~~g~ 375 (554)
T 1w96_A 364 YFLELNPRLQVE 375 (554)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEeeCCCCcc
Confidence 999999988743
No 57
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.34 E-value=3.5e-12 Score=117.01 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=91.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..++ +|.++.++.++++|... ..++++
T Consensus 132 ~~~gip~p~~~~~~~~-~~~~~~~--~~~~~PvVvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lv 205 (451)
T 2yrx_A 132 KKYGIPTADHAAFTSY-EEAKAYI--EQKGAPIVIKADGLA---AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVI 205 (451)
T ss_dssp HHTTCCBCCEEEESCH-HHHHHHH--HHHCSSEEEEECC-------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEE
T ss_pred HHcCCCCCCeEEECCH-HHHHHHH--HhcCCcEEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEE
Confidence 3578999999988632 2233322 347899999999864 57899999999888642 268999
Q ss_pred EeecCCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCcc-cc--cccCCCCC-CCccccCCCChHH
Q 027674 80 QEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVS-CA--AASADDAD-LDPCVAELPPRPL 151 (220)
Q Consensus 80 QefI~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~~ 151 (220)
||||+ |+++.|.++ |+.++.. .|.. ...+++.... .+ +.. .+.. ++++. .+.
T Consensus 206 Ee~i~--G~E~sv~~~~dG~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~-~p~~~l~~~~-----~~~ 265 (451)
T 2yrx_A 206 EEYLE--GEEFSFMAFVNGEKVYPLAIAQDH------------KRAYDGDEGPNTGGMGAY-SPVPQISDEM-----MDA 265 (451)
T ss_dssp EECCC--SEEEEEEEEEETTEEEECCCBEEC------------CEEETTTEEEECSCSEEE-ESCTTSCHHH-----HHH
T ss_pred EECCc--CcEEEEEEEEcCCEEEEeeeEEec------------cccccCCCCCCCCCCeEE-ccCCCCCHHH-----HHH
Confidence 99996 899999888 3333221 1110 0011110000 00 000 0111 22211 233
Q ss_pred H-HHHHHHHHHHh---CCce---eEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 152 L-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 152 ~-~~lA~~l~~~l---Gl~l---~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+ ++++.++.++| |+.+ +++|++++. +| +||+|+|..||-.+
T Consensus 266 ~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 266 ALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PKVIEFNARFGDPE 313 (451)
T ss_dssp HHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTH
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 4 56677777766 6654 558999985 33 89999999999544
No 58
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.32 E-value=1.5e-11 Score=124.49 Aligned_cols=154 Identities=14% Similarity=0.190 Sum_probs=99.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
...||++|++..+++. ++..+. ...++||+|+||..++ +|.++.++.|+++|.+. ..++++||||
T Consensus 137 ~~~Gipvp~~~~v~~~-~ea~~~--~~~ig~PvVvKp~~~~---Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I 210 (1073)
T 1a9x_A 137 KKIGLETARSGIAHTM-EEALAV--AADVGFPCIIRPSFTM---GGSGGGIAYNREEFEEICARGLDLSPTKELLIDESL 210 (1073)
T ss_dssp HHTTCCCCSEEEESSH-HHHHHH--HHHHCSSEEEEETTCC---TTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred HHCCcCCCCEEEECCH-HHHHHH--HHHcCCCEEEEECCCC---CCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEcc
Confidence 3578999999988632 122222 2357999999999865 36789999999998753 3489999999
Q ss_pred CCCCeEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHH
Q 027674 84 NHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+ +.+++.+-|++|+ +.... +.-++++..+ +... ....+ ++ .++++. .+.++++|.++
T Consensus 211 ~-G~~E~~v~v~~d~~g~~v~~~--~~e~~dp~~v---------~~g~-s~~~~-Pa~~l~~~~-----~~~l~~~a~~i 271 (1073)
T 1a9x_A 211 I-GWKEYEMEVVRDKNDNCIIVC--SIENFDAMGI---------HTGD-SITVA-PAQTLTDKE-----YQIMRNASMAV 271 (1073)
T ss_dssp T-TSEEEEEEEEECTTCCEEEEE--EEEESSCTTS---------CGGG-SCEEE-SCCSCCHHH-----HHHHHHHHHHH
T ss_pred C-CCeEEEEEEEEeCCCCEEEEE--EEecccCCcc---------ccCc-EEEEe-cCCCCCHHH-----HHHHHHHHHHH
Confidence 6 2389999999763 32211 1101111000 1000 00000 11 122211 45799999999
Q ss_pred HHHhCCc--eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027674 160 RRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 160 ~~~lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++||+. .+++|++++..++ ++||+|||.-++
T Consensus 272 ~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 272 LREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp HHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred HHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 9999998 7889999986344 699999995555
No 59
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.32 E-value=7.3e-12 Score=114.81 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=93.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCc-EEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P-~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
..+||++|.+..+++. ++..+.+ ..++|| +|+||..++ +|.++.++.++++|... +.+++
T Consensus 137 ~~~gip~p~~~~~~~~-~~~~~~~--~~~g~P~vvvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~l 210 (452)
T 2qk4_A 137 DRHGIPTAQWKAFTKP-EEACSFI--LSADFPALVVKASGLA---AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIV 210 (452)
T ss_dssp HHTTCCBCCEEEESSH-HHHHHHH--HHCSSCEEEEEESBC------CCEEECSSHHHHHHHHHHHTTC-------CCEE
T ss_pred HHCCCCCCCeEEECCH-HHHHHHH--HhCCCCeEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEE
Confidence 3578999999988632 2233322 358999 999998854 46899999999888642 25899
Q ss_pred EEeecCCCCeEEEEEEEC-Ce-EEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCC-CCccccCCCChHHHH
Q 027674 79 LQEFVNHGGVLFKVYIVG-EA-IKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLE 153 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG-~~-v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 153 (220)
+||||+ |+++.|.++. ++ +... .|..-+.. +. ...+++.. . +.. .+.. ++++. .+.+.
T Consensus 211 vEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~~~---~~---~~~~~~g~--~-~~~-~P~~~l~~~~-----~~~~~ 273 (452)
T 2qk4_A 211 IEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKRLL---EG---DGGPNTGG--M-GAY-CPAPQVSNDL-----LLKIK 273 (452)
T ss_dssp EEECCC--SEEEEEEEEECSSCEEECCCBEEEEEEE---TT---TEEEEEEE--E-EEE-ESCTTCCHHH-----HHHHH
T ss_pred EEECCC--CCeEEEEEEECCCEEEEcceeeeccccc---CC---CCCCCCCC--c-eee-ccCccCCHHH-----HHHHH
Confidence 999996 8999999984 32 3322 11100000 00 00000000 0 000 0221 22211 23343
Q ss_pred -HHHHHHHHHh---CCc---eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027674 154 -RLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 154 -~lA~~l~~~l---Gl~---l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+++.++.++| |+. ++++|++++. +| +||+|+|..||-.+
T Consensus 274 ~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~~~~~ 319 (452)
T 2qk4_A 274 DTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKVLEFNCRFGDPE 319 (452)
T ss_dssp HHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEeccCCCcH
Confidence 6777888776 444 5779999985 33 89999999999543
No 60
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.29 E-value=9e-12 Score=126.03 Aligned_cols=149 Identities=17% Similarity=0.316 Sum_probs=90.7
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecC
Q 027674 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVN 84 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~ 84 (220)
..||++|.+..+++. ++..+. ...++||+|+||..++ +|++|.++.++++|..+ +.++++||||+
T Consensus 684 ~~GIp~P~~~~~~s~-eea~~~--~~~ig~PvvVKP~~~~---gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~ 757 (1073)
T 1a9x_A 684 RLKLKQPANATVTAI-EMAVEK--AKEIGYPLVVRASYVL---GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD 757 (1073)
T ss_dssp HHTCCCCCEEECCSH-HHHHHH--HHHHCSSEEEEC----------CEEEECSHHHHHHHHHHCC--------EEEBCCT
T ss_pred HcCcCCCCceEECCH-HHHHHH--HHHcCCCEEEEECCCC---CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 467999999988631 222222 2347999999999854 57899999999998753 35899999996
Q ss_pred CCCeEEEEEEECCe--EEE--EEEecCC-CCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 027674 85 HGGVLFKVYIVGEA--IKV--VRRFSLP-DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 85 h~g~~~KV~ViG~~--v~~--~~R~slp-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+.+++.|-+++|. +++ ..+.-.+ ++..++ . ........++++. .+.++++|.++
T Consensus 758 -g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----------~----~~~~P~~~l~~~~-----~~~i~~~a~~i 816 (1073)
T 1a9x_A 758 -DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----------S----ACSLPAYTLSQEI-----QDVMRQQVQKL 816 (1073)
T ss_dssp -TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----------C----CEEESCSSCCHHH-----HHHHHHHHHHH
T ss_pred -CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----------c----eEEecCCCCCHHH-----HHHHHHHHHHH
Confidence 2348888888443 332 2221111 010000 0 0000011232221 46799999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027674 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++||+. ++++|+++++ + ++||+|||..||
T Consensus 817 ~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 817 AFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAA 847 (1073)
T ss_dssp HHHTTCCEEEEEEEEECS--S-CEEEEEEECSCC
T ss_pred HHHcCCcceEEEEEEEEC--C-eEEEEEEECCCc
Confidence 9999995 8889999963 3 589999999998
No 61
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.24 E-value=1.9e-11 Score=124.67 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+++ .++..+. ...++||+|+||..|+ +|.+|.++.++++|.+. +.++
T Consensus 143 ~~~GIPvp~~~~~~v~s-~eea~~~--a~~igyPvVVKp~~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~v 216 (1165)
T 2qf7_A 143 ISVGVPVVPATEPLPDD-MAEVAKM--AAAIGYPVMLKASWGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEV 216 (1165)
T ss_dssp HHTTCCBC------------------------------------------------------------------------
T ss_pred HHcCCCCCCeeCcCCCC-HHHHHHH--HHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 35789999998 4542 2233332 2468999999999865 47789999999988642 2579
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~-~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++||||+ +|+.+.|.+++|. ++. ..|. +.. .. +.. ....+....++++. .+.+
T Consensus 217 lVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~s~~--------r~------~~~--~~e~~Pa~~l~~~~-----~~~i 274 (1165)
T 2qf7_A 217 YLEKLVE-RARHVESQILGDTHGNVVHLFERDCSVQ--------RR------NQK--VVERAPAPYLSEAQ-----RQEL 274 (1165)
T ss_dssp ---CCCS-SEEEEEEEEEECTTSCEEEEEEEEEEEE--------ET------TEE--EEEEESCTTCCHHH-----HHHH
T ss_pred EEEEecc-CCcEEEEEEEEcCCCcEEEEEeecccce--------ec------ccc--eEEecccccCCHHH-----HHHH
Confidence 9999997 4799999999763 433 2332 110 00 000 00000011233222 4678
Q ss_pred HHHHHHHHHHhCCcee-EEEEEEeCCCCCeEEEEEecCCCCCC
Q 027674 153 ERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~-G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
.++|.++.+++|+.-+ ++|++++..+| ++|++|+|..||..
T Consensus 275 ~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 275 AAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPRIQVE 316 (1165)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred HHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcCCCCC
Confidence 9999999999999954 59999983234 69999999999843
No 62
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.24 E-value=1.1e-11 Score=120.20 Aligned_cols=152 Identities=15% Similarity=0.241 Sum_probs=62.1
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .++ +.++..+. ...++||+|+||..|+ ++.+|.++.++++|.+. +.++
T Consensus 124 ~~~GVPvpp~~~~~~~-s~~e~~~~--a~~igyPvVvKp~~gg---ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~v 197 (681)
T 3n6r_A 124 QEANVSTVPGYMGLIE-DADEAVKI--SNQIGYPVMIKASAGG---GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRI 197 (681)
T ss_dssp HTTTCCCCCC----------------------------------------------------------------------
T ss_pred HHcCcCcCCccccCcC-CHHHHHHH--HHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 46789999975 343 22333332 3468999999999864 57899999999998652 3479
Q ss_pred EEEeecCCCCeEEEEEEECCe---EE-EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~-~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++||||+. .+.+.|.+++|. ++ ...|. |+.. .+... ...+....++++. .+.+
T Consensus 198 lvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr--------------~~~k~--~e~~Pa~~l~~~~-----~~~l 255 (681)
T 3n6r_A 198 FIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQR--------------RNQKV--VEEAPSPFLDEAT-----RRAM 255 (681)
T ss_dssp -----CCS-CEEEEEEEECCSSSCCEEEEEEECCCEE--------------TTEEC--EEEESCSSCCHHH-----HHHH
T ss_pred EEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceec--------------cCccE--EEecCCCCCCHHH-----HHHH
Confidence 99999973 499999999763 22 22332 2110 00000 0000011133322 4678
Q ss_pred HHHHHHHHHHhCCcee-EEEEEEeCCCCCeEEEEEecCCCCCC
Q 027674 153 ERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~-G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
.++|.++.+++|+.-+ .+|++++. +| ++|++|+|.-|+-.
T Consensus 256 ~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 256 GEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTRLQVE 296 (681)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECSCCTT
T ss_pred HHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccccCCC
Confidence 9999999999999844 59999985 34 68999999999643
No 63
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.24 E-value=4.3e-11 Score=121.89 Aligned_cols=150 Identities=13% Similarity=0.218 Sum_probs=94.5
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+++ ..+..+ ....++||+|+||..|+ +|++|.++.++++|... +.++
T Consensus 127 ~~aGIPvpp~~~~~v~s-~eea~~--~a~~iGyPvVVKP~~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~v 200 (1150)
T 3hbl_A 127 IKADLPVIPGTDGPIKS-YELAKE--FAEEAGFPLMIKATSGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEV 200 (1150)
T ss_dssp HHTTCCBCCBCSSCBCS-SSTTTT--TGGGTCSSEEEECCC----------CEECCSSSCTHHHHSSSSSCC------CB
T ss_pred HHcCcCCCCccccCCCC-HHHHHH--HHHHcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 35789999998 4542 223332 23468999999999865 57899999999887642 3579
Q ss_pred EEEeecCCCCeEEEEEEECCe---EE-EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027674 78 VLQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~-~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++||||+ +.+.+.|-+++|. ++ ...|. +... . +.. ....+....++++. .+.+
T Consensus 201 lVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr--------~------~~k--~~e~~Pa~~l~~~~-----~~~l 258 (1150)
T 3hbl_A 201 YIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR--------R------HQK--VVEVAPSVGLSPTL-----RQRI 258 (1150)
T ss_dssp EEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES--------S------SCE--EEEESSCSSCCHHH-----HHHH
T ss_pred EEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec--------c------Cce--eEEecCCCCCCHHH-----HHHH
Confidence 9999996 3489999999763 33 33332 2100 0 000 00000111233222 4679
Q ss_pred HHHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027674 153 ERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
.++|.++.+++|+.-++ +|++++.+ ++|++|||.-|+-
T Consensus 259 ~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR~~g 297 (1150)
T 3hbl_A 259 CDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPRVQV 297 (1150)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECSCCT
T ss_pred HHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCCCCC
Confidence 99999999999998655 99999863 6999999999973
No 64
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.22 E-value=5.6e-12 Score=122.15 Aligned_cols=152 Identities=10% Similarity=0.140 Sum_probs=95.9
Q ss_pred CCCCCCCCcEEEE-ecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027674 13 SYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
...||++|.+... -.+.++..+. ...++||+|+||..|+ +|.+|.++.++++|.+. +.+++
T Consensus 150 ~~~GVpvpp~~~~~~~s~~e~~~~--a~~igyPvvvKp~~G~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vl 224 (675)
T 3u9t_A 150 EEAGVPLVPGYHGEAQDLETFRRE--AGRIGYPVLLKAAAGG---GGKGMKVVEREAELAEALSSAQREAKAAFGDARML 224 (675)
T ss_dssp HHTTCCBCCCCCSCCCCTTHHHHH--HHHSCSSBCCBCCC---------CCCBCCTTTHHHHHSCCCC--------CCCB
T ss_pred HHcCcCcCCccccCCCCHHHHHHH--HHhCCCcEEEEECCCC---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 3568999987653 1122233332 2458999999999865 57899999999998652 35899
Q ss_pred EEeecCCCCeEEEEEEECC---eEEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027674 79 LQEFVNHGGVLFKVYIVGE---AIKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~---~v~~-~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
+||||+. .+.+.|-|++| +++. ..|. |+..- +... ...+....++++. .+++.
T Consensus 225 vEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr~--------------~qk~--ie~~Pa~~l~~~~-----~~~l~ 282 (675)
T 3u9t_A 225 VEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQRR--------------HQKV--VEEAPAPGLGAEL-----RRAMG 282 (675)
T ss_dssp CCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBSS--------------SSBC--EEEESCSSCCHHH-----HHHHH
T ss_pred EEeecCC-CcEEEEEEEEcCCCCEEEEeccccceeec--------------cceE--EEECCCCCCCHHH-----HHHHH
Confidence 9999973 38899988865 3443 3342 22110 0000 0000011133222 46789
Q ss_pred HHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCC
Q 027674 154 RLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 154 ~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++|.++.+++|+. .+++|++++. +| ++|++|+|.-|+-
T Consensus 283 ~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~~~ 321 (675)
T 3u9t_A 283 EAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRLQV 321 (675)
T ss_dssp HHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSCCT
T ss_pred HHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEeccccccC
Confidence 9999999999996 6679999986 34 6999999999974
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.18 E-value=5.9e-11 Score=121.49 Aligned_cols=150 Identities=17% Similarity=0.275 Sum_probs=59.0
Q ss_pred CCCCCCCCcE-EEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027674 13 SYGKVDVPRQ-LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~-~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
..+||++|.+ ..++ +.++..+ ....++||+|+||..|+ +|.+|.++.++++|.+. +.+++
T Consensus 153 ~~aGIPvpp~~~~v~-s~eea~~--~a~~iGyPvVVKP~~Gg---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vl 226 (1236)
T 3va7_A 153 ERAKVPLVPGSGLIK-DAKEAKE--VAKKLEYPVMVKSTAGG---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVF 226 (1236)
T ss_dssp HHTTCCCCC-----------------------------------------------------------------------
T ss_pred HHcCCCCCCeeEecC-CHHHHHH--HHHHcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEE
Confidence 3578999875 4444 2233333 23468999999998864 57899999999998652 34799
Q ss_pred EEeecCCCCeEEEEEEECCe---EEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHHH
Q 027674 79 LQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLL 152 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~~---v~~~-~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (220)
+||||+ +++++.|.+++|. +... .|. ++. ..+... ...+ ++ .++++. .+++
T Consensus 227 VEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~q--------------r~~~k~--~e~~-Pa~~l~~~~-----~~~l 283 (1236)
T 3va7_A 227 MERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQ--------------RRNQKV--IEET-PAPNLPEAT-----RAKM 283 (1236)
T ss_dssp -------CCEEEEEEEEEESSSCEEEEEEEEEEEE--------------ETTEEE--EEEE-SCSSCCHHH-----HHHH
T ss_pred EeeccC-CCeEEEEEEEecCCceEEEEeeeeeeee--------------ecCcce--EEEc-CCCCCCHHH-----HHHH
Confidence 999996 2599999999762 3322 231 210 001000 0000 11 233322 4679
Q ss_pred HHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027674 153 ERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 153 ~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++|.++.+++|+. .+++|++++.+++ ++|++|||.-++
T Consensus 284 ~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl~ 323 (1236)
T 3va7_A 284 RAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARLQ 323 (1236)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred HHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCCC
Confidence 99999999999997 5669999986434 799999999885
No 66
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=7e-11 Score=87.01 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=57.0
Q ss_pred ccCCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CC
Q 027674 11 SNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EP 75 (220)
Q Consensus 11 ~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~ 75 (220)
....+||++|.+. .+++ ..+..+. ...++||+|+||..++ +|.++.++.|+++|... +.
T Consensus 15 ~l~~~gip~p~~~~~~~~~-~~~~~~~--~~~~~~P~vvKp~~~~---~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ 88 (108)
T 2cqy_A 15 LAKKAEVNTIPGFDGVVKD-AEEAVRI--AREIGYPVMIKASAGG---GGKGMRIAWDDEETRDGFRLSSQEAASSFGDD 88 (108)
T ss_dssp CCCSSCCCCCSCCCSCBSS-HHHHHHH--HHHHCSSEEEEETTSC---CTTTCEEESSHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHcCCCCCCCcccccCC-HHHHHHH--HHhcCCCEEEEECCCC---CCccEEEeCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3567889999987 5542 1122222 2347999999999854 46799999999888642 36
Q ss_pred CeEEEeecCCCCeEEEEEEEC
Q 027674 76 PLVLQEFVNHGGVLFKVYIVG 96 (220)
Q Consensus 76 p~vvQefI~h~g~~~KV~ViG 96 (220)
++++||||+. .+++.|.|+|
T Consensus 89 ~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 89 RLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp CEEEEECCSS-SSCCCSCCCC
T ss_pred cEEEeeccCC-CcEEEEEecC
Confidence 8999999973 3688888776
No 67
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=98.95 E-value=4.2e-09 Score=93.65 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=75.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc----CCCeEEEeecCCCCe
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----EPPLVLQEFVNHGGV 88 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~----~~p~vvQefI~h~g~ 88 (220)
...||++|++.. . ++. .++||+|+||..|+ +|+|+.++.+ ++|... ..++++||||+ |.
T Consensus 107 ~~~Gip~P~~~~--~--ee~-------~i~~PviVKp~~g~---ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~--g~ 169 (320)
T 2pbz_A 107 EGAGIPRVEVVE--P--EDA-------KPDELYFVRIEGPR---GGSGHFIVEG-SELEERLSTLEEPYRVERFIP--GV 169 (320)
T ss_dssp HHHTCCBCCBCC--S--CCC-------CSSCCEEEECC---------------C-EECSCCCC----CCEEEECCC--SC
T ss_pred HHCCcCCCCeeC--H--hHc-------CcCCcEEEEECCCC---CCCCEEEECh-HHHHHHHHhcCCCEEEEeeec--eE
Confidence 356799998872 1 122 48999999999853 6999999999 999754 25799999997 55
Q ss_pred EEEEEE----ECCeEEE-EEEecCCCCcccccccCCceeeecCc----ccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 027674 89 LFKVYI----VGEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRV----SCAAASADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 89 ~~KV~V----iG~~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
.+.+-+ +-+++.+ ..+.-+-+ ..|.+..+.. +-.|.. +..++++ ..+++.++|.++
T Consensus 170 ~~~~~~f~~~~~g~~e~~~~~~r~e~--------~~g~~~~p~~~~~~~~~G~~--P~~~~~~-----~~~~a~~~a~~i 234 (320)
T 2pbz_A 170 YLYVHFFYSPILERLELLGVDERVLI--------ADGNARWPVKPLPYTIVGNR--AIALRES-----LLPQLYDYGLAF 234 (320)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEET--------TCSSSSSCCSCCCCCEEEEE--ECEECGG-----GHHHHHHHHHHH
T ss_pred ecceeEEeccccCceeEEEecceEEE--------ECCeeecccCCCceeeecCC--CCccCHH-----HHHHHHHHHHHH
Confidence 544111 2233322 12111111 1111111000 000000 1122221 246789999999
Q ss_pred HHHh------CCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027674 160 RRQL------GLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 160 ~~~l------Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++| |+. .+++| + .. ++ ++||+|||.-|+
T Consensus 235 ~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~ 270 (320)
T 2pbz_A 235 VRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRID 270 (320)
T ss_dssp HHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBC
T ss_pred HHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCC
Confidence 9998 766 88899 4 32 23 589999999744
No 68
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.86 E-value=1.2e-08 Score=91.97 Aligned_cols=147 Identities=16% Similarity=0.250 Sum_probs=85.9
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------------C--CCeE
Q 027674 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------E--PPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------------~--~p~v 78 (220)
..+|||||++ +++ . ..+.||+|+||..++ +|+|+.++.+++++.+. . .+++
T Consensus 133 ~~~GIptp~~--~~~----~------~e~~~PvVVK~~~~a---~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~vi 197 (361)
T 2r7k_A 133 REAGLRVPKK--YES----P------EDIDGTVIVKFPGAR---GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAH 197 (361)
T ss_dssp HHTTCCCCCE--ESS----G------GGCCSCEEEECSCCC---C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCE
T ss_pred HHcCcCCCCE--eCC----H------HHcCCCEEEeeCCCC---CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEE
Confidence 4678999976 331 1 123699999998743 68999999999888642 1 4699
Q ss_pred EEeecCCCCeEEEE---EE-ECCeEE--EE-EEe-c-------CCCCcccccccC-CceeeecCcccccccCCCCCCCcc
Q 027674 79 LQEFVNHGGVLFKV---YI-VGEAIK--VV-RRF-S-------LPDVTKQDLSTS-AGVFRFPRVSCAAASADDADLDPC 142 (220)
Q Consensus 79 vQefI~h~g~~~KV---~V-iG~~v~--~~-~R~-s-------lp~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 142 (220)
+||||+ |..+.+ |- +++++. .. .|. + +|- ....... ...|. -.+.. +..++++
T Consensus 198 IEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~--~~~~~~~~~p~~v-----~~G~~--Pa~l~~~ 266 (361)
T 2r7k_A 198 IEEYVV--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPA--KDQLEMNINPSYV-----ITGNI--PVVIRES 266 (361)
T ss_dssp EEECCC--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCH--HHHHTCCCCCCEE-----EEEEE--ECCCCGG
T ss_pred EEeccc--eEEeeEEEEecccCCeeEEEEecceEEeecccceecch--hhhhcccCCCceE-----EecCc--CCcCCHH
Confidence 999996 666652 11 244332 22 231 1 110 0000000 00010 00000 2223332
Q ss_pred ccCCCChHHHHHHHHHHHHHh------CCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027674 143 VAELPPRPLLERLAKELRRQL------GLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 143 ~~~~~~~~~~~~lA~~l~~~l------Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
. .+++.++|.++.++| |+. .++++++++. ++ +++|+|||.-||
T Consensus 267 ~-----~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~EIapR~g 316 (361)
T 2r7k_A 267 L-----LPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFEMSARVD 316 (361)
T ss_dssp G-----HHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEEEESSBC
T ss_pred H-----HHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEEEEcCCCC
Confidence 2 567899999999999 555 7789999974 33 589999999777
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.80 E-value=4.3e-08 Score=89.03 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=41.7
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc----CCCeEEEeecCC------CC--eEEEEEEE
Q 027674 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----EPPLVLQEFVNH------GG--VLFKVYIV 95 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~----~~p~vvQefI~h------~g--~~~KV~Vi 95 (220)
.+-+.++|+||..+ + .|+|+.++.+.+++.++ ..++|+|+||++ +| .|+|+||+
T Consensus 144 ~~~~~~wI~KP~~~--s-rG~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 144 NEEGNVWIAKSSSG--A-KGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp TTCCCCEEEEESCC-------CCBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred cCCCCeEEEeCCcc--C-CCCCEEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 46789999999774 3 79999999999998653 568999999975 44 49999998
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.36 E-value=1.6e-07 Score=79.27 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=60.1
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccC--CCCcccccee-eeChhhhhcc---------------
Q 027674 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLKKL--------------- 73 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~--Gs~~sh~m~l-v~~~~~L~~~--------------- 73 (220)
...+||++|++..+++. .+..+ ....++||+|+||..+. +-..+.|+.+ +.|++++...
T Consensus 29 l~~~GIp~p~~~~~~~~-~ea~~--~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~ 105 (238)
T 1wr2_A 29 LKAYGLPVPEEKLAKTL-DEALE--YAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDA 105 (238)
T ss_dssp HHTTTCCCCCCEEESSH-HHHHH--HHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHcCcCCCCeEEeCCH-HHHHH--HHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCC
Confidence 45789999999988632 12222 22458999999998741 1114667777 7999888642
Q ss_pred -CCCeEEEeecCCCCeEEEEEEECCe
Q 027674 74 -EPPLVLQEFVNHGGVLFKVYIVGEA 98 (220)
Q Consensus 74 -~~p~vvQefI~h~g~~~KV~ViG~~ 98 (220)
...+++||||+ +|+++-|.+++|.
T Consensus 106 ~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 106 EILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp CCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred ccceEEEEECCC-CCeEEEEEEEeCC
Confidence 15799999998 4899999999876
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.90 E-value=7.7e-06 Score=74.57 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=61.8
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeeccc-CCCCccccceeeeChhhhhcc-------------CCCe
Q 027674 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a-~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
...+|||||++.++++. ++..+ ....++||+|+||... +|...+.||.++.+++++++. ...+
T Consensus 12 L~~~GIpvp~~~~~~s~-eea~~--aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~v 88 (397)
T 3ufx_B 12 LARYGVPVPPGKVAYTP-EEAKR--IAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKV 88 (397)
T ss_dssp HHHTTCCCCCEEEESSH-HHHHH--HHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCE
T ss_pred HHHCCCCCCCeEEECCH-HHHHH--HHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceE
Confidence 34689999999999632 22222 2235789999999872 233356799999999888652 1479
Q ss_pred EEEeecCCCCeEEEEEEECCeE
Q 027674 78 VLQEFVNHGGVLFKVYIVGEAI 99 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~v 99 (220)
++|||+++ |+++-+.++.|+.
T Consensus 89 lVEe~v~~-g~El~vgv~~D~~ 109 (397)
T 3ufx_B 89 LVAEAVDI-AKEYYAGLILDRA 109 (397)
T ss_dssp EEEECCCE-EEEEEEEEEEETT
T ss_pred EEEEeecC-CeeEEEEEEecCC
Confidence 99999974 8999999998863
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.73 E-value=2.2e-05 Score=71.36 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=61.1
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCc-EEEeeccc-CCCCccccceeeeChhhhhcc-----C----------
Q 027674 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVA-DGSAKSHELSLAYDQYSLKKL-----E---------- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P-~VvKP~~a-~Gs~~sh~m~lv~~~~~L~~~-----~---------- 74 (220)
...+|||+|++..+++. ++..+ ....++|| +|+||... +|-..+.++.++.+++++++. .
T Consensus 12 L~~~GIpvp~~~~~~s~-eea~~--aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~ 88 (388)
T 2nu8_B 12 FARYGLPAPVGYACTTP-REAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDA 88 (388)
T ss_dssp HHHTTCCCCCEEEESSH-HHHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCT
T ss_pred HHHCCcCCCCeeEECCH-HHHHH--HHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCC
Confidence 34689999999998632 22222 22358999 99999873 222357799999999887641 1
Q ss_pred -----CCeEEEeecCCCCeEEEEEEECCeE
Q 027674 75 -----PPLVLQEFVNHGGVLFKVYIVGEAI 99 (220)
Q Consensus 75 -----~p~vvQefI~h~g~~~KV~ViG~~v 99 (220)
.++++|||+++ ++++-|.++.|+.
T Consensus 89 ~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 89 NGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp TCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred CCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 26999999974 7999999998764
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.58 E-value=5e-05 Score=69.14 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=58.4
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCC-cEEEeecccCCC-Ccc-------ccceeeeChhhhhcc-----C---
Q 027674 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGS-AKS-------HELSLAYDQYSLKKL-----E--- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~-P~VvKP~~a~Gs-~~s-------h~m~lv~~~~~L~~~-----~--- 74 (220)
...+|||+|++..+++ .++..+. ...++| |+|+||...+|. -.+ -+|.++.+++++++. .
T Consensus 12 L~~~GIpvp~~~~~~s-~~ea~~~--a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~ 88 (395)
T 2fp4_B 12 MSDNGVKVQRFFVADT-ANEALEA--AKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNL 88 (395)
T ss_dssp HHHTTCCCCCEEEESS-HHHHHHH--HHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEE
T ss_pred HHHCCcCCCCeEEECC-HHHHHHH--HHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcch
Confidence 3468999999998853 2222222 234799 899999633322 111 468899999888642 1
Q ss_pred ------------CCeEEEeecCCCCeEEEEEEECCeE
Q 027674 75 ------------PPLVLQEFVNHGGVLFKVYIVGEAI 99 (220)
Q Consensus 75 ------------~p~vvQefI~h~g~~~KV~ViG~~v 99 (220)
..+++|||++ .|+++-+.++.|+.
T Consensus 89 ~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~~ 124 (395)
T 2fp4_B 89 ATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDRS 124 (395)
T ss_dssp ECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEETT
T ss_pred hhhccCCCCCccceEEEEEccC-CceeEEEEEEEccc
Confidence 2599999997 48999999998763
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=93.36 E-value=0.14 Score=48.98 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=45.6
Q ss_pred cEEEeecccCCCCccccceeeeC-hhhhhc----c-CCCeEEEeecCCCCeE-----EEEEEECCeEEE-EEEec
Q 027674 44 PLVAKPLVADGSAKSHELSLAYD-QYSLKK----L-EPPLVLQEFVNHGGVL-----FKVYIVGEAIKV-VRRFS 106 (220)
Q Consensus 44 P~VvKP~~a~Gs~~sh~m~lv~~-~~~L~~----~-~~p~vvQefI~h~g~~-----~KV~ViG~~v~~-~~R~s 106 (220)
..|.||..| . ++.+|.++.. .+.+.+ + +.++|.|||++-+..+ +-+|++||+... ..|.+
T Consensus 529 ~yV~KPi~g--R-eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 529 GYAVKPIAG--R-CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp CEEEEETTC--C-TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEccCCC--C-CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 389999995 3 6788999876 222222 2 4689999999987777 899999999875 56876
No 75
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=92.73 E-value=0.23 Score=45.48 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=56.5
Q ss_pred CCCCcEEEEecCCCCchHHH-HhcCCC-CcEEEeecc-cCCCCccccceeeeChhhhhcc----------C-------CC
Q 027674 17 VDVPRQLVIERDASSIPDVV-LKAGLT-LPLVAKPLV-ADGSAKSHELSLAYDQYSLKKL----------E-------PP 76 (220)
Q Consensus 17 I~~P~~~~i~~~~~~~~~~l-~~~~l~-~P~VvKP~~-a~Gs~~sh~m~lv~~~~~L~~~----------~-------~p 76 (220)
+..|++..++.. .+..+.. ....++ ||+|+|+.. .+|-..+.++.+..++++++++ . .-
T Consensus 26 ~~~~~~~~~~~~-~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~ 104 (425)
T 3mwd_A 26 QNRFKYARVTPD-TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (425)
T ss_dssp CSTTCCEEECTT-CCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred cCCcceEEeCCC-CCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEE
Confidence 456667777532 3333332 234576 999999976 2344567789999999887642 0 14
Q ss_pred eEEEeecCCC-CeEEEEEEECCeE
Q 027674 77 LVLQEFVNHG-GVLFKVYIVGEAI 99 (220)
Q Consensus 77 ~vvQefI~h~-g~~~KV~ViG~~v 99 (220)
+++|++++|+ ++++-+.+.=|+.
T Consensus 105 vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 105 FLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp EEEEECCCCCGGGEEEEEEEEETT
T ss_pred EEEEecccCCCCceEEEEEEecCC
Confidence 8999999985 7899988886664
No 76
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=82.82 E-value=1.3 Score=43.69 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCcEEEEecCCCCchHHHH-hcCCC-CcEEEeecc-cCCCCccccceeeeChhhhhcc---------C--------CCeE
Q 027674 19 VPRQLVIERDASSIPDVVL-KAGLT-LPLVAKPLV-ADGSAKSHELSLAYDQYSLKKL---------E--------PPLV 78 (220)
Q Consensus 19 ~P~~~~i~~~~~~~~~~l~-~~~l~-~P~VvKP~~-a~Gs~~sh~m~lv~~~~~L~~~---------~--------~p~v 78 (220)
.|++..++.. .+..+... ...++ ||+|+|+.. .+|-..+-++.+..++++.+++ . .-++
T Consensus 28 ~~~~~~v~~~-~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvL 106 (829)
T 3pff_A 28 RFKYARVTPD-TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFL 106 (829)
T ss_dssp TTCCEEECTT-CCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEE
T ss_pred CCceEEeCCC-CCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Confidence 6677777532 33333222 22355 999999964 2344566788898999887642 1 2389
Q ss_pred EEeecCCC-CeEEEEEEECCeE
Q 027674 79 LQEFVNHG-GVLFKVYIVGEAI 99 (220)
Q Consensus 79 vQefI~h~-g~~~KV~ViG~~v 99 (220)
+|++++|+ +++|-+.+.=|+.
T Consensus 107 VE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 107 IEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp EEECCCCCGGGEEEEEEEEETT
T ss_pred EEecccCCCccEEEEEEEecCC
Confidence 99999985 7999988886664
No 77
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=82.13 E-value=0.98 Score=41.84 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=31.9
Q ss_pred cEEEeecccCCCCcccccee--eeChhhhhcc-----CCC--eEEEeecCCC-------C------eEEEEEEE-CCe
Q 027674 44 PLVAKPLVADGSAKSHELSL--AYDQYSLKKL-----EPP--LVLQEFVNHG-------G------VLFKVYIV-GEA 98 (220)
Q Consensus 44 P~VvKP~~a~Gs~~sh~m~l--v~~~~~L~~~-----~~p--~vvQefI~h~-------g------~~~KV~Vi-G~~ 98 (220)
-+|+||..+. ++.+|.+ -.+.++++++ ..| +|+||+|+-+ | .++|+|++ |+.
T Consensus 364 ~lViKp~~g~---gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~ 438 (474)
T 3n6x_A 364 ELVVKEVQGS---GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT 438 (474)
T ss_dssp GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSS
T ss_pred heEEEecCCC---CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCc
Confidence 6899999864 3566755 3445555542 456 9999999732 2 47888888 543
No 78
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=78.40 E-value=3.4 Score=39.73 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=30.6
Q ss_pred cEEEeecccCCCCccccceeeeChhh-hhc-----cCCCeEEEeecCCC-----CeEEEEEEECCeEEE-EEEec
Q 027674 44 PLVAKPLVADGSAKSHELSLAYDQYS-LKK-----LEPPLVLQEFVNHG-----GVLFKVYIVGEAIKV-VRRFS 106 (220)
Q Consensus 44 P~VvKP~~a~Gs~~sh~m~lv~~~~~-L~~-----~~~p~vvQefI~h~-----g~~~KV~ViG~~v~~-~~R~s 106 (220)
..|.||..|- ++.+|.+.....+ ... .+.++|+|||++-. -..+-+|++|++... ..|.+
T Consensus 544 ~yV~KPi~gR---eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 544 GYAKKPIVGR---VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp CEEEEECC------------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred CeEeccCCCC---CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 3999999953 5677888754322 121 14689999999842 356889999999875 46875
No 79
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=41.23 E-value=48 Score=30.04 Aligned_cols=61 Identities=16% Similarity=0.359 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh---CCceeE-EEEEEeCCCCCeEEEEEecCCCC-CCCCC-CchhHHHHHHHHHHhhhcc
Q 027674 153 ERLAKELRRQL---GLRLFN-LDIIREHGTRDQFYVIDINYFPG-YGKMP-EYEHIFTDFLLSLTQSRYK 216 (220)
Q Consensus 153 ~~lA~~l~~~l---Gl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg-~~g~~-~~~~~l~~~i~~~~~~~~~ 216 (220)
.+|=.+.+.+. .--+|+ ||+-- . |-++.=||.|.||| |-++. .+..+-++++.+.+++.++
T Consensus 27 ~~IE~WFr~~w~~~~~PfY~SVDlRn-a--GfKlAPVDtNLFPaGFNNL~~~~~plavqa~~~aiek~cp 93 (432)
T 3k1t_A 27 PRIEHWFRSQWQEYGAPFYASVDLRN-A--GFKLAPVDTNLFPGGFNNLNPDFLPLCIQAAMVAVEKICP 93 (432)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEEEEEE-C--SSCEEEEEEESSCCCGGGSCGGGHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCCCceEEEEecc-c--CCccccccccCCCcccccCCHHHHHHHHHHHHHHHHHhCc
Confidence 34444555443 445665 99664 3 34699999999998 76664 4555666666666666543
No 80
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=37.19 E-value=1.3e+02 Score=22.65 Aligned_cols=63 Identities=8% Similarity=0.091 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EEEEEeCCCCCeEEEEEecCCCCCCCCCC-c----hhHHHHHHHHHHhhhc
Q 027674 151 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPGYGKMPE-Y----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 151 ~~~~lA~~l~~~lGl~l~--------G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~-~----~~~l~~~i~~~~~~~~ 215 (220)
.-+++|.+.-+.-|+.+. | +|+|...+ +.+++|||-+--+|..-.. . ...|......|+...+
T Consensus 25 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~LVFVEVKtR~~~g~p~eaV~~~K~~ri~~aA~~yL~~~~ 101 (134)
T 3fov_A 25 SAEASAADYLERQGYRILARRFKTRCGEIDLVAQRD--ALVAFVEVKARGNVDDAAYAVTPRQQSRIVAAAEAWLSRHP 101 (134)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEET--TEEEEEEEEEC------CCCCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHCCCEEEeccccCCCCcEEEEEEEC--CEEEEEEEEEccCCCCHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 368888888899999864 7 99999763 4799999998877543111 1 2467777777777654
No 81
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=34.27 E-value=10 Score=27.03 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=16.1
Q ss_pred EeecCCC--CeEEEEEEECCe
Q 027674 80 QEFVNHG--GVLFKVYIVGEA 98 (220)
Q Consensus 80 QefI~h~--g~~~KV~ViG~~ 98 (220)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5799998 999999999875
No 82
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=33.32 E-value=34 Score=31.52 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=19.7
Q ss_pred CceeEEEEEEeCCCCCeEEEEEecC
Q 027674 165 LRLFNLDIIREHGTRDQFYVIDINY 189 (220)
Q Consensus 165 l~l~G~Dvi~~~~~~~~~~ViEVN~ 189 (220)
+.++|+|++.+. +| +++|+|-|.
T Consensus 142 ~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 142 AHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp CSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEECC-CC-CEEEEEeCC
Confidence 678999999986 45 699999996
No 83
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=32.53 E-value=12 Score=27.65 Aligned_cols=24 Identities=29% Similarity=0.710 Sum_probs=18.2
Q ss_pred CCeEEEeecCCC--CeEEEEEEECCe
Q 027674 75 PPLVLQEFVNHG--GVLFKVYIVGEA 98 (220)
Q Consensus 75 ~p~vvQefI~h~--g~~~KV~ViG~~ 98 (220)
.|+-.+.|+||+ |-+|+|..+|+.
T Consensus 22 ~~ms~E~YLNHPTFGLLyrVc~~~e~ 47 (112)
T 3n5b_B 22 NPENSETYINHPTWGLLYRICMVDES 47 (112)
T ss_dssp ----CCCEEEETTTEEEEEEEEEETT
T ss_pred CCcchhhhccCCccchheeeeecCCc
Confidence 367778899998 999999999875
No 84
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=22.64 E-value=2.4e+02 Score=24.07 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=30.8
Q ss_pred CCCeEEEeecCCCCeEEEEEEE--CCe--EEEEEEecCCCCcccccccCCceeeecCc
Q 027674 74 EPPLVLQEFVNHGGVLFKVYIV--GEA--IKVVRRFSLPDVTKQDLSTSAGVFRFPRV 127 (220)
Q Consensus 74 ~~p~vvQefI~h~g~~~KV~Vi--G~~--v~~~~R~slp~~~~~~~~~~~g~~~~~~~ 127 (220)
+...++||=| +|.=|+++++ |+. +-++.|... +..++.+|.|+.+
T Consensus 32 ~~ewvatEKI--HGaNFsii~~~d~~~~~i~~akRs~~-------l~~~e~FfGy~~i 80 (277)
T 1xdn_A 32 AQEWVACEKV--HGTNFGIYLINQGDHEVVRFAKRSGI-------MDPNENFFGYHIL 80 (277)
T ss_dssp GSCEEEEEEC--CSEEEEEEEEEETTEEEEEEEETTEE-------CCTTCCCTTGGGG
T ss_pred CCcEEEEEee--ccccEEEEEecCCCeeEEEEeecccc-------cCcccccccHHHH
Confidence 4589999999 6899999994 666 566666542 1223456766653
No 85
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=21.78 E-value=2.3e+02 Score=25.69 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=42.8
Q ss_pred EEEeecccCCCCccccceeeeChhhhhccC----------------CCeEEEeecCCCC------eEEEEEEECCeEEEE
Q 027674 45 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHGG------VLFKVYIVGEAIKVV 102 (220)
Q Consensus 45 ~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~----------------~p~vvQefI~h~g------~~~KV~ViG~~v~~~ 102 (220)
+|||...| + .+-|+..|.+.+++..++ ..+++||=|..-- .+-=||-||..+++.
T Consensus 280 V~VKADaG--T-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvGg 356 (432)
T 3k1t_A 280 VIVKADAG--T-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGG 356 (432)
T ss_dssp EEEEEECG--G-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCCC--C-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 79999884 4 677888899999997752 2599999886421 234589999998864
Q ss_pred -EEe
Q 027674 103 -RRF 105 (220)
Q Consensus 103 -~R~ 105 (220)
.|.
T Consensus 357 FyRv 360 (432)
T 3k1t_A 357 FYRV 360 (432)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 465
Done!