BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027676
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 62/82 (75%)
Query: 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81
RR LH + RVGDLDR+IKFYTE GMK+LRK DVPE+KY+ FLG+GPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVTSYDIGTGFGHFAIATEDA 103
YGVTSY +GH AI ED
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDV 88
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 13/119 (10%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 163
LGMK+LR D PE KYTL LGY E +TVLELTYNYGVT Y AY +AI +DV
Sbjct: 30 LGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYGVTSYKHDEAYGHIAIGVEDV- 88
Query: 164 KSAEVVNLVTQELGGKITRQ--PGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEIQSE 220
+EL + + P + + VDPDG+ L++ + +++ +++
Sbjct: 89 ----------KELVADMRKHDVPIDYEDESGFMAFVVDPDGYYIELLNEKTMMEKAEAD 137
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY 82
R LH + RVGDL R+I FYT+ GMKLLR + PE KYS AF+G+GPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVTSYDIGTGFGHFAIATEDA 103
GV Y++GT +GH A++ ++A
Sbjct: 62 GVDKYELGTAYGHIALSVDNA 82
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 163
LGMKLLRT + PEYKY+LA +GY E + V+ELTYN+GV +Y G AY +A+S D+
Sbjct: 24 LGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAA 83
Query: 164 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212
++ E + ++ GG +TR+ G + G T I DPDG+K L++ +D
Sbjct: 84 EACEKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 128
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----------KYSNAFLGFGPE 70
RR LH V++VG+ +T +FY + GMK+LR + E K+S +GFGPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 QSHFVVELTYNYGVTSYDIGTGFGHFAIATEDAL 104
HFV ELTYNYGV Y +G F +A+ A+
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASSQAV 119
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 102 DALGMKLLR----------TVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN 150
D LGMK+LR + P + K++ M+G+ ED V ELTYNYGV +Y GN
Sbjct: 47 DVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAELTYNYGVGDYKLGN 106
Query: 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKI--TRQPG 185
+ + +++ +A + E+ + T PG
Sbjct: 107 DFMGITLASSQAVSNARKLEWPLTEVAEGVFETEAPG 143
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 37/136 (27%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE--- 145
LG+ LL+ +D P K++L L Y +++ + LELT+N+G +
Sbjct: 53 LGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 146 --YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSF 197
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AF 163
Query: 198 V-DPDG-WKTVLVDNE 211
+ DPDG W +L N+
Sbjct: 164 IQDPDGYWIEILNPNK 179
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 35/132 (26%)
Query: 17 PKKDKRRFL--HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------- 67
P + FL + R+ D +++ FYT G+ LL+K D P K+S FL +
Sbjct: 23 PDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIP 82
Query: 68 --GPEQSHF------VVELTYNYG-----VTSYDIGT----GFGHFAIATEDA------- 103
E++ + +ELT+N+G SY G GFGH IA D
Sbjct: 83 KDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 104 --LGMKLLRTVD 113
LG+K ++ D
Sbjct: 143 EELGVKFVKKPD 154
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 37/136 (27%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE--- 145
LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 52 LGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 146 --YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSF 197
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AF 162
Query: 198 V-DPDG-WKTVLVDNE 211
+ DPDG W +L N+
Sbjct: 163 IQDPDGYWIQILNPNK 178
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 33/119 (27%)
Query: 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG-----PEQS---------- 72
+ RV D +++ FYT GM L++K D P K+S FL + P++
Sbjct: 35 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 94
Query: 73 HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDA---------LGMKLLRTVD 113
+ELT+N+G SY G GFGH IA D LG+K ++ D
Sbjct: 95 KATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 153
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 37/136 (27%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE--- 145
LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 56 LGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 115
Query: 146 --YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSF 197
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F
Sbjct: 116 QSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AF 166
Query: 198 V-DPDG-WKTVLVDNE 211
+ DPDG W +L N+
Sbjct: 167 IQDPDGYWIEILNPNK 182
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 33/121 (27%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG-----PEQS-------- 72
+ RV D +++ FYT GM L++K D P K+S FL + P++
Sbjct: 37 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 96
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDA---------LGMKLLRTV 112
+ELT+N+G SY G GFGH IA D LG+K ++
Sbjct: 97 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 156
Query: 113 D 113
D
Sbjct: 157 D 157
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 37/136 (27%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE--- 145
LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 52 LGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 146 --YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSF 197
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AF 162
Query: 198 V-DPDG-WKTVLVDNE 211
+ DPDG W +L N+
Sbjct: 163 IQDPDGYWIEILNPNK 178
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 33/121 (27%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG-----PEQS-------- 72
+ RV D +++ FYT GM L++K D P K+S FL + P++
Sbjct: 33 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 92
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDA---------LGMKLLRTV 112
+ELT+N+G SY G GFGH IA D LG+K ++
Sbjct: 93 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 113 D 113
D
Sbjct: 153 D 153
>pdb|4DZI|A Chain A, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
pdb|4DZI|B Chain B, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
pdb|4DZI|C Chain C, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
pdb|4DZI|D Chain D, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
Length = 423
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 30/154 (19%)
Query: 67 FGPEQSHFVVELTYNYGVTSYDIGTGF-GHFAIATEDALGMKLLRTVDKPEYKYTLAMLG 125
G +HF+ T++ + + F G + A MK+ R D PEY+ A +
Sbjct: 49 IGDRVNHFIPNPTFDPIIVPGCLDLLFRGEIPDGVDPASLMKVERLADHPEYQNRDARIA 108
Query: 126 YAEED--QTTVLELTYNYGVTEYTKGNAYAQVA--------------------------- 156
+E +T + T+ GV E K + A +A
Sbjct: 109 VMDEQDIETAFMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHRIIAAPI 168
Query: 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL 190
+S D ++ E V+ V + +P +PGL
Sbjct: 169 VSLADPTRAVEEVDFVLARGAKLVLVRPAPVPGL 202
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 38 IKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95
I+ +C KL K +S A GFG E H +V+L V SY+ TG H
Sbjct: 49 IQSAVQC-AKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAH 105
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE 58
H Y D D K+Y E FG L + + PE+
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQ 44
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY 82
R H V DL++ FY G ++ +PE S F+ G + +EL +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPL 60
Query: 83 GVTSYDIG-------TGFGHFAIATED 102
G+ S G G H I ++
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDN 87
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE 58
H Y D D K+Y E FG L + + PE+
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQ 44
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85
H V + + FY +KLL D+P + AFL G + + L+ +
Sbjct: 11 HIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIA 70
Query: 86 SY--DIGTGFGHFAIATED 102
+ G G H AI +
Sbjct: 71 KFIQKRGEGIHHIAIGVKS 89
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 92 GFGHFAIATEDALGMKLLRTVDKPEYKYTLAMLG------YAEED-QTTVLELT 138
G G A ALG KL+ TV PE LG Y+ ED VLELT
Sbjct: 152 GVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELT 205
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 162
LG+KL T +K A++ A D ELT Y + Y Q A DDV
Sbjct: 383 LGIKLAETHNKGYRWQHEAVIALASPDNXNAFELTPQEAEEWYRGRDVYPQAAPVADDV 441
>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter
pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter, In A Closed Conformation With
Benzylhydantoin
Length = 501
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 137 LTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL--NTKI 194
+T YG+T N +A + VY +++ LG ++ G PG+ +T I
Sbjct: 155 VTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLG-EVMSMGGENPGMPFSTAI 213
Query: 195 TSFVDPDGWKTVLVDNEDFLKEIQ 218
FV GW V+V D +KE +
Sbjct: 214 MIFVG--GWIAVVVSIHDIVKECK 235
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 141 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 179
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 180 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 217
I+RQ SIP K+ V P GW +L D E+
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,497,597
Number of Sequences: 62578
Number of extensions: 274774
Number of successful extensions: 714
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 36
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)