Query 027676
Match_columns 220
No_of_seqs 125 out of 1362
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 13:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 1.1E-27 2.3E-32 207.0 25.0 213 2-218 3-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 6.8E-29 1.5E-33 203.4 12.5 197 12-218 6-278 (299)
3 PLN02367 lactoylglutathione ly 99.9 4.4E-23 9.6E-28 171.9 17.6 146 19-214 71-226 (233)
4 PLN03042 Lactoylglutathione ly 99.9 9.3E-22 2E-26 160.0 17.6 145 19-213 23-177 (185)
5 TIGR00068 glyox_I lactoylgluta 99.9 1.8E-21 3.8E-26 152.6 17.9 143 10-215 4-146 (150)
6 PRK10291 glyoxalase I; Provisi 99.9 6.5E-21 1.4E-25 145.3 15.5 122 28-212 1-122 (129)
7 cd08358 Glo_EDI_BRP_like_21 Th 99.9 3.2E-20 6.9E-25 142.3 16.1 126 22-209 1-126 (127)
8 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.3E-19 2.7E-24 140.0 16.2 58 148-210 84-141 (142)
9 cd07233 Glyoxalase_I Glyoxalas 99.8 2.1E-18 4.6E-23 128.7 16.0 121 24-208 1-121 (121)
10 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.9E-18 4E-23 129.4 14.2 122 23-208 1-125 (125)
11 TIGR03645 glyox_marine lactoyl 99.8 3.2E-18 7E-23 136.2 16.0 60 149-212 91-153 (162)
12 PRK11478 putative lyase; Provi 99.8 5.5E-18 1.2E-22 128.3 16.0 125 20-209 3-128 (129)
13 cd07257 THT_oxygenase_C The C- 99.8 1.2E-18 2.6E-23 137.3 12.4 122 23-211 1-126 (153)
14 KOG2944 Glyoxalase [Carbohydra 99.8 2.7E-19 5.9E-24 138.6 8.3 141 20-210 19-168 (170)
15 cd07243 2_3_CTD_C C-terminal d 99.8 6.9E-18 1.5E-22 131.6 16.2 121 21-210 4-125 (143)
16 cd07265 2_3_CTD_N N-terminal d 99.8 6.9E-18 1.5E-22 127.0 14.9 117 21-212 2-121 (122)
17 cd08342 HPPD_N_like N-terminal 99.8 9.4E-18 2E-22 129.3 15.3 126 24-213 1-126 (136)
18 cd08360 MhqB_like_C C-terminal 99.8 3.1E-17 6.8E-22 126.0 15.7 121 22-212 2-122 (134)
19 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 6.7E-17 1.4E-21 120.6 15.9 123 22-209 2-125 (125)
20 TIGR03081 metmalonyl_epim meth 99.8 1.7E-17 3.8E-22 124.9 12.7 125 23-209 1-128 (128)
21 cd07237 BphC1-RGP6_C_like C-te 99.8 4.6E-17 9.9E-22 128.4 15.4 122 20-212 6-133 (154)
22 cd07258 PpCmtC_C C-terminal do 99.7 4.8E-17 1E-21 126.8 14.8 120 25-216 1-120 (141)
23 cd09013 BphC-JF8_N_like N-term 99.7 1.1E-16 2.3E-21 120.4 15.5 117 19-210 2-118 (121)
24 cd07256 HPCD_C_class_II C-term 99.7 1.1E-16 2.4E-21 127.2 15.5 121 22-211 2-124 (161)
25 cd09014 BphC-JF8_C_like C-term 99.7 2.2E-16 4.8E-21 126.1 16.2 123 19-210 2-127 (166)
26 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 2.4E-16 5.3E-21 117.5 15.3 122 21-210 1-125 (125)
27 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.4E-16 5.2E-21 116.4 14.6 118 26-209 1-119 (119)
28 PRK06724 hypothetical protein; 99.7 1.8E-16 3.9E-21 121.6 14.0 57 151-211 63-124 (128)
29 cd08346 PcpA_N_like N-terminal 99.7 2.5E-16 5.5E-21 117.8 13.9 122 23-208 1-126 (126)
30 cd08343 ED_TypeI_classII_C C-t 99.7 4.5E-16 9.7E-21 118.9 15.3 115 25-211 1-118 (131)
31 PRK04101 fosfomycin resistance 99.7 4.3E-16 9.3E-21 120.5 15.3 116 22-211 3-120 (139)
32 PF00903 Glyoxalase: Glyoxalas 99.7 1.1E-16 2.4E-21 119.5 10.7 53 151-207 73-128 (128)
33 cd07239 BphC5-RK37_C_like C-te 99.7 6.3E-16 1.4E-20 120.7 15.2 116 22-211 3-118 (144)
34 cd08347 PcpA_C_like C-terminal 99.7 6.1E-16 1.3E-20 122.6 15.1 118 23-211 1-121 (157)
35 cd07266 HPCD_N_class_II N-term 99.7 4.7E-16 1E-20 116.5 13.7 114 21-210 2-118 (121)
36 cd07249 MMCE Methylmalonyl-CoA 99.7 5.1E-16 1.1E-20 116.6 13.8 125 24-209 1-128 (128)
37 cd07252 BphC1-RGP6_N_like N-te 99.7 5.1E-16 1.1E-20 116.9 13.7 111 23-210 2-117 (120)
38 cd07255 Glo_EDI_BRP_like_12 Th 99.7 1.6E-15 3.4E-20 114.0 16.2 117 22-211 1-120 (125)
39 cd08351 ChaP_like ChaP, an enz 99.7 7.7E-16 1.7E-20 116.3 14.4 111 22-210 3-121 (123)
40 cd07247 SgaA_N_like N-terminal 99.7 1.2E-15 2.5E-20 113.1 14.8 54 151-209 61-114 (114)
41 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1.5E-15 3.3E-20 114.7 15.8 120 23-210 1-128 (128)
42 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 4.7E-16 1E-20 113.4 12.2 114 24-207 1-114 (114)
43 cd08361 PpCmtC_N N-terminal do 99.7 7.7E-16 1.7E-20 116.8 13.4 112 21-211 4-120 (124)
44 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.1E-15 2.3E-20 114.7 14.1 56 150-210 63-119 (120)
45 cd07240 ED_TypeI_classII_N N-t 99.7 1.3E-15 2.8E-20 112.9 14.3 111 22-210 1-114 (117)
46 cd08364 FosX FosX, a fosfomyci 99.7 1.6E-15 3.5E-20 116.2 14.8 55 151-210 66-122 (131)
47 cd08355 Glo_EDI_BRP_like_14 Th 99.7 6.3E-15 1.4E-19 110.7 17.3 56 150-210 67-122 (122)
48 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 8E-15 1.7E-19 109.3 16.7 118 27-210 5-122 (122)
49 cd08348 BphC2-C3-RGP6_C_like T 99.7 5E-15 1.1E-19 113.0 15.6 125 23-215 1-125 (134)
50 cd08363 FosB FosB, a fosfomyci 99.7 2.2E-15 4.8E-20 115.5 13.3 57 150-211 58-116 (131)
51 cd07267 THT_Oxygenase_N N-term 99.7 4.8E-15 1E-19 110.4 14.7 110 21-210 1-110 (113)
52 TIGR03211 catechol_2_3 catecho 99.7 3.1E-15 6.8E-20 129.8 15.5 119 20-209 142-264 (303)
53 TIGR02295 HpaD 3,4-dihydroxyph 99.7 3.3E-15 7.2E-20 128.9 15.5 123 20-211 133-257 (294)
54 cd08362 BphC5-RrK37_N_like N-t 99.7 5.2E-15 1.1E-19 110.4 14.2 112 22-210 2-117 (120)
55 cd07262 Glo_EDI_BRP_like_19 Th 99.6 6.4E-15 1.4E-19 110.6 13.8 58 151-209 64-123 (123)
56 cd08359 Glo_EDI_BRP_like_22 Th 99.6 9.8E-15 2.1E-19 108.9 14.4 52 153-209 68-119 (119)
57 cd07264 Glo_EDI_BRP_like_15 Th 99.6 7.3E-15 1.6E-19 110.2 13.7 54 152-210 72-125 (125)
58 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.4E-14 3E-19 107.2 14.4 55 151-210 57-111 (112)
59 cd07244 FosA FosA, a Fosfomyci 99.6 6.8E-15 1.5E-19 110.8 12.6 108 23-210 1-110 (121)
60 PF12681 Glyoxalase_2: Glyoxal 99.6 1.2E-14 2.5E-19 106.4 13.0 55 149-208 54-108 (108)
61 cd08357 Glo_EDI_BRP_like_18 Th 99.6 1E-14 2.2E-19 109.3 13.0 56 151-210 65-125 (125)
62 cd08345 Fosfomycin_RP Fosfomyc 99.6 2.2E-14 4.8E-19 105.9 12.8 56 150-210 54-111 (113)
63 TIGR03213 23dbph12diox 2,3-dih 99.6 2.9E-14 6.2E-19 123.0 15.2 118 21-210 140-263 (286)
64 cd08354 Glo_EDI_BRP_like_13 Th 99.6 3.9E-14 8.4E-19 105.7 13.9 120 24-210 1-122 (122)
65 TIGR03211 catechol_2_3 catecho 99.6 2.6E-14 5.6E-19 124.0 14.8 116 21-212 2-120 (303)
66 cd07254 Glo_EDI_BRP_like_20 Th 99.6 6E-14 1.3E-18 105.0 14.6 58 150-211 57-118 (120)
67 cd07235 MRD Mitomycin C resist 99.6 5.4E-14 1.2E-18 105.4 13.9 53 151-208 66-121 (122)
68 cd08344 MhqB_like_N N-terminal 99.6 5.9E-14 1.3E-18 104.2 13.7 48 155-209 61-108 (112)
69 cd07261 Glo_EDI_BRP_like_11 Th 99.6 4.8E-14 1E-18 104.5 13.2 54 150-209 58-114 (114)
70 cd09012 Glo_EDI_BRP_like_24 Th 99.6 5.3E-14 1.1E-18 106.1 13.2 53 151-209 68-123 (124)
71 cd08350 BLMT_like BLMT, a bleo 99.6 8.1E-14 1.8E-18 104.6 13.8 53 153-210 60-119 (120)
72 cd08349 BLMA_like Bleomycin bi 99.6 1.1E-13 2.5E-18 101.5 14.2 54 151-209 58-112 (112)
73 TIGR02295 HpaD 3,4-dihydroxyph 99.6 6.5E-14 1.4E-18 120.8 15.0 113 21-212 2-117 (294)
74 cd06587 Glo_EDI_BRP_like This 99.6 1.4E-13 3.1E-18 99.0 13.6 112 26-207 1-112 (112)
75 PF13669 Glyoxalase_4: Glyoxal 99.5 2.7E-13 5.8E-18 100.7 11.0 96 25-184 1-97 (109)
76 TIGR03213 23dbph12diox 2,3-dih 99.5 4.1E-13 8.8E-18 115.8 13.7 114 21-211 1-119 (286)
77 PLN02300 lactoylglutathione ly 99.5 7.4E-13 1.6E-17 114.4 15.3 118 91-212 23-150 (286)
78 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.3E-12 2.9E-17 97.5 12.8 52 153-209 57-113 (113)
79 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.1E-12 4.5E-17 96.0 13.0 51 154-209 67-120 (121)
80 KOG2943 Predicted glyoxalase [ 99.4 7E-13 1.5E-17 109.5 8.3 108 91-211 16-144 (299)
81 COG3324 Predicted enzyme relat 99.4 7.3E-12 1.6E-16 95.4 12.6 119 20-210 6-125 (127)
82 COG2514 Predicted ring-cleavag 99.3 2E-10 4.3E-15 96.9 14.7 123 19-212 6-128 (265)
83 cd07250 HPPD_C_like C-terminal 99.3 4E-11 8.7E-16 98.0 9.9 108 22-185 2-113 (191)
84 COG3607 Predicted lactoylgluta 99.2 7.9E-11 1.7E-15 88.3 9.6 55 153-210 73-127 (133)
85 COG0346 GloA Lactoylglutathion 99.1 7.9E-10 1.7E-14 81.5 9.8 33 22-54 1-33 (138)
86 TIGR01263 4HPPD 4-hydroxypheny 99.0 1.1E-09 2.3E-14 97.6 9.1 108 17-184 152-267 (353)
87 cd06588 PhnB_like Escherichia 99.0 5E-08 1.1E-12 74.2 15.1 51 151-207 74-127 (128)
88 TIGR01263 4HPPD 4-hydroxypheny 98.9 2E-08 4.3E-13 89.4 13.7 128 22-211 1-128 (353)
89 COG3565 Predicted dioxygenase 98.9 1.5E-08 3.3E-13 75.0 9.9 55 155-213 75-132 (138)
90 PRK01037 trmD tRNA (guanine-N( 98.7 7.4E-08 1.6E-12 84.6 10.4 51 155-210 304-354 (357)
91 PLN02875 4-hydroxyphenylpyruva 98.7 3.9E-08 8.4E-13 88.6 8.8 36 19-54 176-211 (398)
92 COG2764 PhnB Uncharacterized p 98.7 9.6E-07 2.1E-11 68.3 15.3 126 27-210 4-131 (136)
93 PF14506 CppA_N: CppA N-termin 98.3 3.1E-05 6.8E-10 58.0 13.6 116 25-213 2-117 (125)
94 KOG0638 4-hydroxyphenylpyruvat 98.2 3.7E-06 8E-11 72.6 7.0 63 147-213 87-151 (381)
95 PRK10148 hypothetical protein; 98.1 0.00027 5.9E-09 55.4 15.4 56 152-210 86-141 (147)
96 COG3185 4-hydroxyphenylpyruvat 98.1 7.2E-06 1.6E-10 71.8 6.6 34 148-185 242-275 (363)
97 COG2514 Predicted ring-cleavag 98.0 4.7E-05 1E-09 64.6 9.8 45 19-69 164-208 (265)
98 PF13468 Glyoxalase_3: Glyoxal 98.0 7.3E-05 1.6E-09 59.9 9.8 130 24-210 1-137 (175)
99 PLN02875 4-hydroxyphenylpyruva 97.8 0.0012 2.5E-08 59.9 14.9 61 148-212 89-153 (398)
100 KOG0638 4-hydroxyphenylpyruvat 97.2 0.00058 1.3E-08 59.3 5.0 147 9-210 163-337 (381)
101 PF14696 Glyoxalase_5: Hydroxy 96.9 0.012 2.6E-07 45.7 9.4 60 148-213 70-129 (139)
102 PF06983 3-dmu-9_3-mt: 3-demet 96.7 0.17 3.8E-06 37.8 14.5 44 153-208 73-116 (116)
103 PF13669 Glyoxalase_4: Glyoxal 96.6 0.0042 9E-08 45.6 4.7 56 153-212 1-57 (109)
104 PF15067 FAM124: FAM124 family 96.4 0.064 1.4E-06 44.9 10.9 32 22-53 127-160 (236)
105 cd08358 Glo_EDI_BRP_like_21 Th 95.1 0.11 2.4E-06 39.6 7.0 25 92-116 2-36 (127)
106 cd08353 Glo_EDI_BRP_like_7 Thi 94.9 0.17 3.6E-06 38.3 7.6 57 151-211 3-70 (142)
107 TIGR03645 glyox_marine lactoyl 94.7 0.16 3.5E-06 39.9 7.4 59 151-212 4-79 (162)
108 PLN02367 lactoylglutathione ly 94.5 0.23 5E-06 41.9 8.1 43 86-128 69-121 (233)
109 cd08346 PcpA_N_like N-terminal 94.2 0.22 4.8E-06 36.1 6.8 59 151-212 1-62 (126)
110 cd08352 Glo_EDI_BRP_like_1 Thi 93.3 0.55 1.2E-05 33.9 7.5 57 151-211 3-59 (125)
111 KOG2944 Glyoxalase [Carbohydra 92.9 0.24 5.1E-06 39.2 5.0 86 22-112 41-144 (170)
112 cd07249 MMCE Methylmalonyl-CoA 92.4 0.63 1.4E-05 33.8 6.7 56 152-211 1-56 (128)
113 PF00903 Glyoxalase: Glyoxalas 91.7 0.79 1.7E-05 33.0 6.5 56 151-210 1-57 (128)
114 PF13468 Glyoxalase_3: Glyoxal 91.4 0.36 7.9E-06 38.3 4.7 56 152-212 1-56 (175)
115 PLN03042 Lactoylglutathione ly 91.0 1.5 3.3E-05 35.6 8.0 61 146-210 22-100 (185)
116 COG3185 4-hydroxyphenylpyruvat 90.2 8.3 0.00018 34.5 12.2 39 12-52 12-51 (363)
117 cd07241 Glo_EDI_BRP_like_3 Thi 89.4 2.1 4.5E-05 30.9 7.0 57 152-212 2-58 (125)
118 cd07242 Glo_EDI_BRP_like_6 Thi 89.3 1.6 3.4E-05 32.0 6.4 55 151-211 1-55 (128)
119 PRK11478 putative lyase; Provi 89.0 2.1 4.6E-05 31.3 6.9 30 151-183 6-35 (129)
120 cd07245 Glo_EDI_BRP_like_9 Thi 89.0 1.4 3.1E-05 30.8 5.8 55 152-213 1-55 (114)
121 cd08347 PcpA_C_like C-terminal 88.3 2.3 5E-05 33.2 7.0 51 151-210 1-53 (157)
122 cd07233 Glyoxalase_I Glyoxalas 88.1 2.1 4.6E-05 30.7 6.3 55 152-210 1-58 (121)
123 cd07250 HPPD_C_like C-terminal 86.8 2.4 5.2E-05 34.3 6.4 59 151-212 3-65 (191)
124 cd08342 HPPD_N_like N-terminal 85.2 5.1 0.00011 30.0 7.2 56 22-81 68-123 (136)
125 cd06587 Glo_EDI_BRP_like This 84.8 3.6 7.8E-05 28.1 5.8 53 154-213 1-53 (112)
126 cd07255 Glo_EDI_BRP_like_12 Th 84.6 4.8 0.0001 29.1 6.6 29 152-183 3-31 (125)
127 cd07263 Glo_EDI_BRP_like_16 Th 83.4 5.1 0.00011 28.3 6.2 55 154-213 1-57 (119)
128 cd08364 FosX FosX, a fosfomyci 82.5 7.3 0.00016 29.0 7.0 30 151-183 4-33 (131)
129 TIGR03081 metmalonyl_epim meth 81.1 6.7 0.00014 28.3 6.3 54 152-210 2-55 (128)
130 cd08348 BphC2-C3-RGP6_C_like T 80.7 9.2 0.0002 28.1 7.0 29 152-183 2-30 (134)
131 cd07235 MRD Mitomycin C resist 80.3 7.1 0.00015 28.2 6.1 26 152-181 1-26 (122)
132 cd08360 MhqB_like_C C-terminal 79.9 9.2 0.0002 28.5 6.8 29 151-182 3-31 (134)
133 cd08344 MhqB_like_N N-terminal 78.9 8.6 0.00019 27.5 6.1 28 151-182 2-29 (112)
134 cd07237 BphC1-RGP6_C_like C-te 78.3 11 0.00024 29.0 6.9 58 149-209 7-67 (154)
135 PF12681 Glyoxalase_2: Glyoxal 78.0 18 0.0004 25.1 7.6 35 19-54 52-86 (108)
136 cd07252 BphC1-RGP6_N_like N-te 77.4 11 0.00025 27.3 6.5 30 151-183 2-31 (120)
137 cd07257 THT_oxygenase_C The C- 76.9 9 0.00019 29.5 6.1 29 152-183 2-30 (153)
138 PF14507 CppA_C: CppA C-termin 76.6 1.4 3.1E-05 32.3 1.3 23 23-46 5-27 (101)
139 PRK04101 fosfomycin resistance 75.9 12 0.00026 28.0 6.4 29 151-182 4-32 (139)
140 cd08351 ChaP_like ChaP, an enz 75.7 14 0.0003 26.9 6.6 29 151-182 4-32 (123)
141 cd07265 2_3_CTD_N N-terminal d 74.2 14 0.0003 26.7 6.2 30 151-183 4-33 (122)
142 PRK10291 glyoxalase I; Provisi 73.9 20 0.00042 26.3 7.1 55 22-80 64-119 (129)
143 cd07240 ED_TypeI_classII_N N-t 73.6 15 0.00033 25.9 6.2 30 151-183 2-31 (117)
144 cd07253 Glo_EDI_BRP_like_2 Thi 72.9 14 0.00031 26.1 6.0 31 151-184 3-33 (125)
145 cd07262 Glo_EDI_BRP_like_19 Th 72.3 18 0.0004 25.9 6.5 33 152-184 1-33 (123)
146 cd04895 ACT_ACR_1 ACT domain-c 71.6 11 0.00023 25.8 4.6 50 157-206 6-56 (72)
147 cd09014 BphC-JF8_C_like C-term 71.2 15 0.00033 28.7 6.2 29 151-182 6-34 (166)
148 cd07247 SgaA_N_like N-terminal 71.2 18 0.0004 25.5 6.2 29 153-184 2-30 (114)
149 cd08363 FosB FosB, a fosfomyci 70.2 16 0.00035 27.1 5.9 28 152-182 1-28 (131)
150 cd09013 BphC-JF8_N_like N-term 69.9 22 0.00048 25.6 6.5 30 151-183 6-35 (121)
151 cd07258 PpCmtC_C C-terminal do 67.2 44 0.00095 25.3 7.8 38 14-51 47-86 (141)
152 cd08361 PpCmtC_N N-terminal do 65.4 30 0.00064 25.3 6.4 29 151-182 6-34 (124)
153 PF06185 YecM: YecM protein; 64.3 64 0.0014 26.3 8.4 78 21-101 32-114 (185)
154 cd08354 Glo_EDI_BRP_like_13 Th 64.0 43 0.00094 23.6 7.0 28 153-183 2-29 (122)
155 cd07239 BphC5-RK37_C_like C-te 63.7 33 0.00071 26.1 6.5 28 151-181 4-31 (144)
156 cd08343 ED_TypeI_classII_C C-t 63.5 28 0.0006 25.6 6.0 27 153-182 1-27 (131)
157 cd07244 FosA FosA, a Fosfomyci 63.1 13 0.00028 26.9 4.1 29 151-182 1-29 (121)
158 COG0051 RpsJ Ribosomal protein 62.5 15 0.00032 27.1 4.1 48 156-204 12-59 (104)
159 cd07256 HPCD_C_class_II C-term 62.3 32 0.00069 26.6 6.4 28 151-181 3-30 (161)
160 cd08345 Fosfomycin_RP Fosfomyc 61.5 29 0.00062 24.3 5.6 27 154-183 1-27 (113)
161 cd07267 THT_Oxygenase_N N-term 60.4 58 0.0013 23.1 7.7 55 21-80 55-109 (113)
162 cd04897 ACT_ACR_3 ACT domain-c 59.8 25 0.00054 24.2 4.6 50 157-206 6-56 (75)
163 cd08359 Glo_EDI_BRP_like_22 Th 59.7 49 0.0011 23.4 6.6 27 25-52 68-94 (119)
164 cd04883 ACT_AcuB C-terminal AC 57.7 25 0.00055 22.9 4.4 29 151-183 41-71 (72)
165 cd07251 Glo_EDI_BRP_like_10 Th 57.2 46 0.00099 23.4 6.1 47 155-211 2-48 (121)
166 cd08362 BphC5-RrK37_N_like N-t 57.1 44 0.00095 23.6 6.0 28 151-181 3-30 (120)
167 PF13670 PepSY_2: Peptidase pr 56.2 35 0.00076 23.4 5.1 46 161-212 30-75 (83)
168 cd07266 HPCD_N_class_II N-term 56.1 19 0.00041 25.8 3.8 30 151-183 4-33 (121)
169 COG0346 GloA Lactoylglutathion 56.1 17 0.00038 25.4 3.6 30 151-183 2-31 (138)
170 TIGR00068 glyox_I lactoylgluta 55.3 26 0.00056 26.6 4.6 33 147-182 13-45 (150)
171 cd07243 2_3_CTD_C C-terminal d 54.2 19 0.00041 27.3 3.7 28 151-181 6-33 (143)
172 cd07268 Glo_EDI_BRP_like_4 Thi 54.1 83 0.0018 24.7 7.1 75 24-101 2-81 (149)
173 cd04882 ACT_Bt0572_2 C-termina 52.3 29 0.00063 21.9 3.9 26 151-180 39-64 (65)
174 cd04927 ACT_ACR-like_2 Second 50.8 56 0.0012 22.1 5.3 47 157-203 5-53 (76)
175 PF07063 DUF1338: Domain of un 50.6 33 0.00071 30.2 5.0 43 25-68 36-83 (302)
176 PRK06724 hypothetical protein; 50.0 30 0.00065 25.8 4.2 31 151-181 7-37 (128)
177 PRK11700 hypothetical protein; 49.8 1E+02 0.0022 25.1 7.3 77 22-101 38-119 (187)
178 TIGR01046 S10_Arc_S20_Euk ribo 49.2 31 0.00068 25.1 3.9 46 157-203 10-55 (99)
179 cd04900 ACT_UUR-like_1 ACT dom 49.1 44 0.00095 22.2 4.5 52 155-206 4-57 (73)
180 cd07246 Glo_EDI_BRP_like_8 Thi 48.8 91 0.002 21.8 7.4 31 22-53 67-97 (122)
181 cd07238 Glo_EDI_BRP_like_5 Thi 48.4 92 0.002 21.7 7.2 30 22-52 56-85 (112)
182 TIGR01049 rpsJ_bact ribosomal 47.4 28 0.00061 25.2 3.5 46 157-203 10-55 (99)
183 cd09011 Glo_EDI_BRP_like_23 Th 46.4 1E+02 0.0023 21.8 6.9 55 22-79 63-117 (120)
184 CHL00135 rps10 ribosomal prote 45.1 35 0.00076 24.9 3.7 46 157-203 16-61 (101)
185 cd09012 Glo_EDI_BRP_like_24 Th 44.9 1E+02 0.0023 22.0 6.4 25 153-181 2-26 (124)
186 PF06185 YecM: YecM protein; 44.7 43 0.00093 27.3 4.4 31 151-183 34-64 (185)
187 PTZ00039 40S ribosomal protein 44.1 40 0.00086 25.3 3.9 46 157-203 26-71 (115)
188 PRK00596 rpsJ 30S ribosomal pr 44.1 37 0.00079 24.7 3.7 46 157-203 13-58 (102)
189 PRK12271 rps10p 30S ribosomal 43.5 43 0.00094 24.5 3.9 46 157-203 11-56 (102)
190 cd07264 Glo_EDI_BRP_like_15 Th 43.5 1.1E+02 0.0024 21.6 6.3 27 25-52 73-99 (125)
191 cd08357 Glo_EDI_BRP_like_18 Th 42.3 43 0.00093 23.8 3.9 27 154-183 2-28 (125)
192 TIGR03884 sel_bind_Methan sele 41.7 83 0.0018 21.7 4.8 27 155-181 20-46 (74)
193 cd04926 ACT_ACR_4 C-terminal 41.6 78 0.0017 21.0 4.8 51 155-205 4-55 (72)
194 cd07268 Glo_EDI_BRP_like_4 Thi 37.1 1.3E+02 0.0029 23.6 5.9 29 152-181 2-30 (149)
195 cd04925 ACT_ACR_2 ACT domain-c 36.5 78 0.0017 21.1 4.2 49 157-205 5-55 (74)
196 PRK11700 hypothetical protein; 34.7 1.5E+02 0.0032 24.3 6.0 30 151-181 39-68 (187)
197 COG1225 Bcp Peroxiredoxin [Pos 30.2 2.1E+02 0.0047 22.6 6.2 56 151-210 64-138 (157)
198 cd07254 Glo_EDI_BRP_like_20 Th 28.3 2.1E+02 0.0046 20.0 7.0 30 22-51 57-88 (120)
199 cd04896 ACT_ACR-like_3 ACT dom 28.1 1.5E+02 0.0032 20.3 4.4 47 157-204 5-54 (75)
200 cd04873 ACT_UUR-ACR-like ACT d 27.1 83 0.0018 19.9 3.0 50 155-204 3-53 (70)
201 cd04885 ACT_ThrD-I Tandem C-te 24.5 1.6E+02 0.0035 19.0 4.1 29 151-180 38-66 (68)
202 PF14133 DUF4300: Domain of un 24.2 1.8E+02 0.0038 24.9 5.1 43 158-205 142-184 (250)
203 PF07494 Reg_prop: Two compone 23.3 95 0.0021 16.0 2.2 13 193-205 7-19 (24)
204 PF02208 Sorb: Sorbin homologo 22.6 32 0.00069 21.4 0.2 23 23-45 11-33 (47)
205 PF13176 TPR_7: Tetratricopept 22.6 64 0.0014 18.2 1.6 18 30-47 11-28 (36)
206 cd04904 ACT_AAAH ACT domain of 22.0 1.4E+02 0.003 19.9 3.4 48 155-202 3-51 (74)
207 COG4747 ACT domain-containing 20.9 94 0.002 23.6 2.4 42 9-51 27-68 (142)
No 1
>PLN02300 lactoylglutathione lyase
Probab=99.96 E-value=1.1e-27 Score=207.01 Aligned_cols=213 Identities=78% Similarity=1.301 Sum_probs=160.0
Q ss_pred CccCccccccceeeccccCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEee
Q 027676 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81 (220)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 81 (220)
|.+|+++--..+++||++.+.+++|++|.|+|+++|++||+++|||++..+...++..+..+|++.++...+..++|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 44667777778999999999999999999999999999999999999987765566667778887765556678888765
Q ss_pred cCCcccCCCCceeEEEEEeCcc----------------------------------------------------------
Q 027676 82 YGVTSYDIGTGFGHFAIATEDA---------------------------------------------------------- 103 (220)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~~---------------------------------------------------------- 103 (220)
.+......+.+..|++|.++++
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 5544444566788999999881
Q ss_pred -------------ccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHH
Q 027676 104 -------------LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 170 (220)
Q Consensus 104 -------------~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~ 170 (220)
+|+++......++..+..+++++++......+++..+.+..+++.++++.|++|.|+|++++++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 233322211122222333334332222334566666555444566789999999999999999999
Q ss_pred HHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhhhhhhh
Q 027676 171 LVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEIQ 218 (220)
Q Consensus 171 ~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~~~~~~ 218 (220)
+++|+++..+|...|+.+.+.++|+||||+.|+|++..+|.+|+.
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 799999999998888755578999999999999999999999973
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.8e-29 Score=203.36 Aligned_cols=197 Identities=48% Similarity=0.829 Sum_probs=162.8
Q ss_pred ceeeccccCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCC-----------CceeEEEeeecCCCceeEEEEEe
Q 027676 12 ELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTY 80 (220)
Q Consensus 12 ~~~~~~~~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~ 80 (220)
.++.|++....+..|+.+.|.|..+++.||+++|||++.+.+++++ ++|+..++++|+|++|+++||++
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 7889999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred ecCCcccCCCCceeEEEEEeCcc---------------------------------------------------------
Q 027676 81 NYGVTSYDIGTGFGHFAIATEDA--------------------------------------------------------- 103 (220)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~~~~~--------------------------------------------------------- 103 (220)
+||+.+|..|++++||++..+++
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~k 165 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIK 165 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHH
Confidence 99999999999999999998882
Q ss_pred -----ccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCC
Q 027676 104 -----LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGG 178 (220)
Q Consensus 104 -----~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~ 178 (220)
+||+++.. +.+.++++|+|+++ .+.||++++++......+.|...+++-.+++..+.+.+ +..+.
T Consensus 166 yw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i----K~~n~ 235 (299)
T KOG2943|consen 166 YWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI----KSANG 235 (299)
T ss_pred HHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH----HHhcc
Confidence 23333322 33456788999876 59999999998766665555544444455666666666 78887
Q ss_pred eeecCCccc--CCCC-ceEEEEECCCCCEEEEEechhhhhhhh
Q 027676 179 KITRQPGSI--PGLN-TKITSFVDPDGWKTVLVDNEDFLKEIQ 218 (220)
Q Consensus 179 ~i~~~p~~~--~~~~-~~~~~~~DPdG~~iElv~~~~~~~~~~ 218 (220)
+|..+.... |++. .+++.+.|||||.|.|+.+++|+++.+
T Consensus 236 ~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 236 TILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 777776543 4543 377888999999999999999999876
No 3
>PLN02367 lactoylglutathione lyase
Probab=99.91 E-value=4.4e-23 Score=171.93 Aligned_cols=146 Identities=30% Similarity=0.553 Sum_probs=107.8
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
+....++|++|+|+|+++|++||+++|||++..+.++++++|+.+|+++++.... +. . ...
T Consensus 71 t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~-----------p~-d-~~~------ 131 (233)
T PLN02367 71 TKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASA-----------PT-D-PTE------ 131 (233)
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCcccc-----------cc-c-ccc------
Confidence 3457999999999999999999999999999999999999999999976421100 00 0 000
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCc------ccccC----CceeeEEEEeCCHHHHHHH
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKG----NAYAQVAISTDDVYKSAEV 168 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~------~~~~~----~g~~Hiaf~v~Dv~a~~~~ 168 (220)
+.. +.++ ....|||+++.+.+ .++.+ .|++||||.|+|+++++++
T Consensus 132 -------------------r~~---~~~~---~~~~LELt~n~g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~er 186 (233)
T PLN02367 132 -------------------RTV---WTFG---QKATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACER 186 (233)
T ss_pred -------------------cee---eccC---CCCEEEEecCCCCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHH
Confidence 000 0000 13467777766543 14444 3899999999999999999
Q ss_pred HHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhhh
Q 027676 169 VNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 214 (220)
Q Consensus 169 l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~~ 214 (220)
| +++|+++..+|...++ .+++||+||||++|||++.....
T Consensus 187 L----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 187 F----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred H----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 9 7999999988765322 47899999999999999987654
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.89 E-value=9.3e-22 Score=159.96 Aligned_cols=145 Identities=26% Similarity=0.509 Sum_probs=101.3
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
+.+.+++|++|+|+|+++|++||+++|||++..+...+++.++.+|+++++... .+....+ .
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~-----------~~~~~~~----~--- 84 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSET-----------APTDPPE----R--- 84 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCccc-----------CCcchhh----c---
Confidence 567899999999999999999999999999999887777788999987532100 0000000 0
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcc------cc----cCCceeeEEEEeCCHHHHHHH
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YT----KGNAYAQVAISTDDVYKSAEV 168 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~------~~----~~~g~~Hiaf~v~Dv~a~~~~ 168 (220)
.++|- .....|||+++.+..+ +. .+.|+.||||.|+|+++++++
T Consensus 85 ----------------------~~~l~----~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~ 138 (185)
T PLN03042 85 ----------------------TVWTF----GRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACER 138 (185)
T ss_pred ----------------------ccccc----cCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHH
Confidence 00000 0122445544332211 11 124899999999999999999
Q ss_pred HHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhh
Q 027676 169 VNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 169 l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
| +++|+++...|.. +...+++||+||||+.|||++....
T Consensus 139 L----~~~Gv~v~~~p~~--~~~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 139 F----EKLGVEFVKKPDD--GKMKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred H----HHCCCeEEeCCcc--CCceeEEEEECCCCCEEEEEECCCc
Confidence 9 7999999877654 2224678999999999999998665
No 5
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.89 E-value=1.8e-21 Score=152.59 Aligned_cols=143 Identities=50% Similarity=0.860 Sum_probs=106.3
Q ss_pred ccceeeccccCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCC
Q 027676 10 NAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI 89 (220)
Q Consensus 10 ~~~~~~~~~~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~ 89 (220)
++++.+-|+.-+++++|++|.|+|+++|++||+++|||++..+...+++.+..++++.++...+..+++...+
T Consensus 4 ~~~~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 76 (150)
T TIGR00068 4 SGDLVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNW------- 76 (150)
T ss_pred ccccccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecC-------
Confidence 5678888999999999999999999999999999999998776555554445566654322222233332111
Q ss_pred CCceeEEEEEeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHH
Q 027676 90 GTGFGHFAIATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVV 169 (220)
Q Consensus 90 g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l 169 (220)
...+...+.++.|+||.|+|+++++++|
T Consensus 77 ----------------------------------------------------~~~~~~~~~g~~hi~f~v~dld~~~~~l 104 (150)
T TIGR00068 77 ----------------------------------------------------GTEKYDLGNGFGHIAIGVDDVYKACERV 104 (150)
T ss_pred ----------------------------------------------------CCCcccCCCceeEEEEecCCHHHHHHHH
Confidence 0011223457889999999999999999
Q ss_pred HHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhhhh
Q 027676 170 NLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 215 (220)
Q Consensus 170 ~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~~~ 215 (220)
.++|+++..+|.+.+++..+.+||+||||++|||++.....+
T Consensus 105 ----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 146 (150)
T TIGR00068 105 ----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKD 146 (150)
T ss_pred ----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhh
Confidence 799999988886655554578899999999999999875544
No 6
>PRK10291 glyoxalase I; Provisional
Probab=99.87 E-value=6.5e-21 Score=145.33 Aligned_cols=122 Identities=48% Similarity=0.867 Sum_probs=90.3
Q ss_pred EEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCccccce
Q 027676 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDALGMK 107 (220)
Q Consensus 28 ~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~g~~ 107 (220)
+|.|+|+++|++||+++|||+++.+...++..+..+|++.++......+++..+++.
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------- 57 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV----------------------- 57 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCC-----------------------
Confidence 488999999999999999999987766565556677776543222333444322111
Q ss_pred EEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCccc
Q 027676 108 LLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSI 187 (220)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~ 187 (220)
.+...+.++.|+||.|+|+++++++| +++|+++..++.+.
T Consensus 58 ------------------------------------~~~~~g~~~~hlaf~V~d~~~~~~~l----~~~G~~~~~~~~~~ 97 (129)
T PRK10291 58 ------------------------------------DKYELGTAYGHIALSVDNAAEACEKI----RQNGGNVTREAGPV 97 (129)
T ss_pred ------------------------------------CCCcCCCCeeEEEEEeCCHHHHHHHH----HHcCCccccCCccc
Confidence 11223457889999999999999999 79999998877665
Q ss_pred CCCCceEEEEECCCCCEEEEEechh
Q 027676 188 PGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 188 ~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+.+..+++||+|||||.|||++..+
T Consensus 98 ~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 98 KGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCCceEEEEEECCCCCEEEEEEccc
Confidence 5544467899999999999999764
No 7
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=3.2e-20 Score=142.31 Aligned_cols=126 Identities=34% Similarity=0.570 Sum_probs=82.3
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
.++.|++|+|+|+++|++||+++|||++..+.+++++.-......
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~----------------------------------- 45 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGP----------------------------------- 45 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccC-----------------------------------
Confidence 378999999999999999999999999988776654200000000
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
...+|++++++++++..+..+||+++.+..+++.+.+ |++|.|++. ++.++| +++|+++.
T Consensus 46 -------------~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~~--~~hlav~~~-d~~~~l----~~~Gv~~~ 105 (127)
T cd08358 46 -------------YDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGND--FLGITIHSK-QAVSNA----KKHNWPVT 105 (127)
T ss_pred -------------CCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCCC--EEEEEEECH-HHHHHH----HHCCCcee
Confidence 0011222333322222344566666655544554555 566666665 555777 79999987
Q ss_pred cCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 182 RQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 182 ~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
..|. .++|++||||++|||+.
T Consensus 106 ~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 106 EVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred cCCC-------CEEEEECCCCCEEEEec
Confidence 6544 27899999999999986
No 8
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.84 E-value=1.3e-19 Score=140.00 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=49.5
Q ss_pred cCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 148 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 148 ~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.+.|+.||||.|+|+++++++| +++|+++..++...+. +.+++||+||||+.|||+|.
T Consensus 84 ~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 84 NALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 3458999999999999999999 7999999887654433 35889999999999999985
No 9
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.81 E-value=2.1e-18 Score=128.72 Aligned_cols=121 Identities=43% Similarity=0.803 Sum_probs=87.4
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCcc
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDA 103 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~ 103 (220)
+.|++|.|+|+++|++||+++||+++..+...+++.+..+++..+....+..+++....+..
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~------------------ 62 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTE------------------ 62 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCC------------------
Confidence 57999999999999999999999999876554444455666654210023334432211000
Q ss_pred ccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
.+...+++..|++|.|+|++++++++ +++|+++..+
T Consensus 63 ----------------------------------------~~~~~~~~~~~i~~~v~did~~~~~l----~~~G~~~~~~ 98 (121)
T cd07233 63 ----------------------------------------EPYDNGNGFGHLAFAVDDVYAACERL----EEMGVEVTKP 98 (121)
T ss_pred ----------------------------------------CCcCCCCCeEEEEEEeCCHHHHHHHH----HHCCCEEeeC
Confidence 01223347889999999999999999 7999999988
Q ss_pred CcccCCCCceEEEEECCCCCEEEEE
Q 027676 184 PGSIPGLNTKITSFVDPDGWKTVLV 208 (220)
Q Consensus 184 p~~~~~~~~~~~~~~DPdG~~iElv 208 (220)
|... ...+++||+|||||.|||+
T Consensus 99 ~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 99 PGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred CccC--CCceEEEEECCCCCEEEeC
Confidence 8754 3347899999999999985
No 10
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=1.9e-18 Score=129.42 Aligned_cols=122 Identities=21% Similarity=0.317 Sum_probs=82.4
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
+++|++|.|+|+++|++||+++|||+...+...+...+..+|+..+ .+..++|........
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~---------------- 61 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFD---DGARLELMTRPDIAP---------------- 61 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecC---CCcEEEEEcCcccCC----------------
Confidence 5799999999999999999999999986554333334555566542 223455542110000
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCCe
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~ 179 (220)
........|+.||||.|+| +++++++| +++|++
T Consensus 62 ----------------------------------------~~~~~~~~g~~hi~f~v~~~~~v~~~~~~l----~~~g~~ 97 (125)
T cd07241 62 ----------------------------------------SPNEGERTGWAHLAFSVGSKEAVDELTERL----RADGYL 97 (125)
T ss_pred ----------------------------------------CcccCCCCceEEEEEECCCHHHHHHHHHHH----HHCCCE
Confidence 0001123478999999975 56666666 899999
Q ss_pred eecCCcccCCCCceEEEEECCCCCEEEEE
Q 027676 180 ITRQPGSIPGLNTKITSFVDPDGWKTVLV 208 (220)
Q Consensus 180 i~~~p~~~~~~~~~~~~~~DPdG~~iElv 208 (220)
+..+|...+. +.+.++++|||||.|||.
T Consensus 98 ~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 98 IIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred EEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 9887754333 235678999999999984
No 11
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.80 E-value=3.2e-18 Score=136.24 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC-cc-cCCC-CceEEEEECCCCCEEEEEechh
Q 027676 149 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP-GS-IPGL-NTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 149 ~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p-~~-~~~~-~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+.|+.|+||.|+|++++++++ +++|+++..++ .. .++. ..+.+||+|||||.|||+++..
T Consensus 91 ~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 91 KTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred cccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 468999999999999999999 78998764432 21 1221 2378999999999999999743
No 12
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=5.5e-18 Score=128.31 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=81.4
Q ss_pred CcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCC-CceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 20 ~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
.+.+++|++|.|+|+++|++||+++|||++..+...+. ..+... +.. .++..++|.......
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~---~~~~~l~l~~~~~~~------------- 65 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LAL---NGQYVIELFSFPFPP------------- 65 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-Eec---CCCcEEEEEEecCCC-------------
Confidence 45789999999999999999999999999865321111 111111 111 112334443110000
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCC
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGG 178 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~ 178 (220)
.........|+.||||.|+|+++++++| +++|+
T Consensus 66 -------------------------------------------~~~~~~~~~g~~hi~f~v~d~~~~~~~l----~~~G~ 98 (129)
T PRK11478 66 -------------------------------------------ERPSRPEACGLRHLAFSVDDIDAAVAHL----ESHNV 98 (129)
T ss_pred -------------------------------------------CCCCCCCCCceeEEEEEeCCHHHHHHHH----HHcCC
Confidence 0000112347889999999999999999 78999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
++...+.. +..+.+++||+|||||.|||++
T Consensus 99 ~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 99 KCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred eeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 98644322 2223478999999999999987
No 13
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.79 E-value=1.2e-18 Score=137.34 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=83.6
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCC-CCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
+++||+|.|+|+++|++||+++||+++..+...+ .+....+|+..+.. ...++.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~----------------------- 55 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRG--EEYVDH----------------------- 55 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCC--CCcccc-----------------------
Confidence 5899999999999999999999999987654433 12234455543110 000000
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHH---HHHHHHHHHcCC
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA---EVVNLVTQELGG 178 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~---~~l~~~~~~~G~ 178 (220)
+.+.+. ...+.|++||||.|+|++++. ++| +++|+
T Consensus 56 -------------------------------~~~~l~-------~~~~~g~~Hiaf~v~die~~~~~~~~L----~~~Gv 93 (153)
T cd07257 56 -------------------------------HTLALA-------QGPESGVHHAAFEVHDFDAQGLGHDYL----REKGY 93 (153)
T ss_pred -------------------------------hHHHHh-------cCCCCceeEEEEEcCCHHHHHHHHHHH----HHCCC
Confidence 000000 011358999999999998875 666 89999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
++.++|+....+...++|++|||||.|||+...
T Consensus 94 ~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 94 EHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred cEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 998887765444446789999999999999764
No 14
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.7e-19 Score=138.59 Aligned_cols=141 Identities=29% Similarity=0.461 Sum_probs=103.8
Q ss_pred CcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEE
Q 027676 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (220)
Q Consensus 20 ~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~ 99 (220)
.-..+.|.+++|+|+.+|+.||++++|+.+..+..+++..|..+++++...+. ++....+.. -
T Consensus 19 ~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~-----------vP~~~~~~~--v---- 81 (170)
T KOG2944|consen 19 PTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSED-----------VPKPEHGVS--V---- 81 (170)
T ss_pred chhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhccccccc-----------CccCCCCCc--e----
Confidence 33677999999999999999999999999998888888888888887631111 111111110 0
Q ss_pred eCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcc-----cccCC----ceeeEEEEeCCHHHHHHHHH
Q 027676 100 TEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-----YTKGN----AYAQVAISTDDVYKSAEVVN 170 (220)
Q Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~-----~~~~~----g~~Hiaf~v~Dv~a~~~~l~ 170 (220)
.+. -.+..+||+||.|... +++++ |++||||.|+|+++++.+|
T Consensus 82 ---------------------~~~------~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~l- 133 (170)
T KOG2944|consen 82 ---------------------FVF------SRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERL- 133 (170)
T ss_pred ---------------------EEe------cccCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHH-
Confidence 000 1245788888887541 33333 9999999999999999999
Q ss_pred HHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 171 LVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 171 ~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+++|+++...|.. |....++|+.||||++||+..+
T Consensus 134 ---kekGV~f~Kk~~d--Gk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 134 ---KEKGVRFKKKLKD--GKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred ---HHhCceeeecCCC--ccccceeEEECCCCCeEEEeec
Confidence 7999998776653 3223789999999999999865
No 15
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.79 E-value=6.9e-18 Score=131.62 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=80.4
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCce-eEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEE
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~ 99 (220)
..+++|++|.|+|+++|++||+++|||++..+...+++.. ..+|+..+. .++.+.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~--~~h~~~---------------------- 59 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN--KPHDIA---------------------- 59 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC--CcceEE----------------------
Confidence 5789999999999999999999999999876643222211 123332210 011110
Q ss_pred eCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCe
Q 027676 100 TEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~ 179 (220)
+. ...+.+++|+||.|+|++++ .+..++++++|++
T Consensus 60 -------------------------------------~~-------~~~~~~~~Hiaf~v~d~~~l-~~~~~~l~~~Gv~ 94 (143)
T cd07243 60 -------------------------------------FV-------GGPDGKLHHFSFFLESWEDV-LKAGDIISMNDVS 94 (143)
T ss_pred -------------------------------------Ee-------cCCCCCceEEEEEcCCHHHH-HHHHHHHHHcCCc
Confidence 00 00124789999999998764 2233344899999
Q ss_pred eecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 180 ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 180 i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+...|.....+..+.+||+|||||.|||+..
T Consensus 95 i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 95 IDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred eEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 8877654332234779999999999999764
No 16
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.78 E-value=6.9e-18 Score=127.00 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=78.8
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
.++++|+.|.|+|+++|++||+++|||++..+. +++ .+|+.......++.+.+.
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~--~~~---~~~~~~~~~~~~~~~~l~--------------------- 55 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRD--DQG---RVYLKAWDEFDHHSIVLR--------------------- 55 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeec--CCc---eEEEEccCCCcccEEEec---------------------
Confidence 578999999999999999999999999987642 111 123322111111111110
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC---CHHHHHHHHHHHHHHcC
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEVVNLVTQELG 177 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~---Dv~a~~~~l~~~~~~~G 177 (220)
.....++.|+||.|+ |++++++++ +++|
T Consensus 56 ---------------------------------------------~~~~~~~~hiaf~v~~~~dv~~~~~~l----~~~G 86 (122)
T cd07265 56 ---------------------------------------------EADTAGLDFMGFKVLDDADLEKLEARL----QAYG 86 (122)
T ss_pred ---------------------------------------------cCCCCCeeEEEEEeCCHHHHHHHHHHH----HHCC
Confidence 011236789999998 566666666 8999
Q ss_pred CeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 178 GKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 178 ~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+++...|.....+.++.+||+|||||.|||.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 87 VAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 99887654322223478999999999999987643
No 17
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.78 E-value=9.4e-18 Score=129.33 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=87.1
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCcc
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDA 103 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~ 103 (220)
++|++|.|.|+++|++||+++|||++..+...+ .....++.. ....+.|.......+. .
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~----g~~~l~l~~~~~~~~~--~------------- 59 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ----GDINFVLNSPLNSFAP--V------------- 59 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc----CCEEEEEecCCCCCCc--h-------------
Confidence 589999999999999999999999988764321 112233321 1223333211000000 0
Q ss_pred ccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
.......+.+..|+||.|+|++++++++ +++|+++..+
T Consensus 60 --------------------------------------~~~~~~~~~g~~hia~~V~Dvda~~~~l----~~~G~~v~~~ 97 (136)
T cd08342 60 --------------------------------------ADFLEKHGDGVCDVAFRVDDAAAAYERA----VARGAKPVQE 97 (136)
T ss_pred --------------------------------------HHHHHhcCCceEEEEEEeCCHHHHHHHH----HHcCCeEccC
Confidence 0000113457889999999999999999 7999999999
Q ss_pred CcccCCCCceEEEEECCCCCEEEEEechhh
Q 027676 184 PGSIPGLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 184 p~~~~~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
|...++ +.+.+|++||||++|||+++..+
T Consensus 98 p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 98 PVEEPG-ELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred ceecCC-eEEEEEEeccCCcEEEEEecCCC
Confidence 887444 45899999999999999998765
No 18
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.1e-17 Score=126.00 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=83.6
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
.+++|++|.|+|+++|++||+++||+++..+.. . ...|+..+....++.+.|...
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~-------------------- 56 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKT-------------------- 56 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecC--------------------
Confidence 579999999999999999999999999876532 1 234444321112223323100
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
.....|+.||||.|+|++++.+ +.++++++|+++.
T Consensus 57 --------------------------------------------~~~~~g~~hiaf~v~d~~~~~~-~~~~l~~~G~~~~ 91 (134)
T cd08360 57 --------------------------------------------PAPMAGFHHAAFEVGDIDEVML-GGNHMLRAGYQTG 91 (134)
T ss_pred --------------------------------------------CCCCCcceEEEEEeCCHHHHHH-HHHHHHHcCCccc
Confidence 0012478999999999866653 3344489999988
Q ss_pred cCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 182 RQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 182 ~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
.+|...+.+..+++||+||+|+.|||.....
T Consensus 92 ~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 92 WGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred cCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 7776555444477999999999999997543
No 19
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=6.7e-17 Score=120.60 Aligned_cols=123 Identities=21% Similarity=0.296 Sum_probs=81.3
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCC-CceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
.+++|++|.|.|++++++||+++|||++..+...++ ..+.. .+.. ..+..++|........
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~l~~~~~~~~-------------- 63 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLL---NGGYQLELFSFPNPPE-------------- 63 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEec---CCCcEEEEEEcCCCCC--------------
Confidence 578999999999999999999999999876532221 11111 1111 1112333321100000
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCee
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKI 180 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i 180 (220)
......+.|+.|+||.|+|++++++++ +++|+++
T Consensus 64 ------------------------------------------~~~~~~~~g~~h~~~~v~d~~~~~~~l----~~~G~~~ 97 (125)
T cd08352 64 ------------------------------------------RPSYPEACGLRHLAFSVEDIEAAVKHL----KAKGVEV 97 (125)
T ss_pred ------------------------------------------CCCCCcCCCceEEEEEeCCHHHHHHHH----HHcCCcc
Confidence 000112357899999999999999999 7899998
Q ss_pred ecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 181 TRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
..++..... +.+++|++||+||.|||+|
T Consensus 98 ~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 98 EPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred ccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 776543222 3478999999999999985
No 20
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.75 E-value=1.7e-17 Score=124.94 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=83.0
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
+++|++|.|+|+++|++||+++|||++......++..+..+++..+ ...++|....+..... +
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~-~------------ 63 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPI-A------------ 63 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChH-H------------
Confidence 5799999999999999999999999987654333333445555432 1234443211100000 0
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.-....+.|..|+||.|+|++++++++ +++|+++..
T Consensus 64 ----------------------------------------~~~~~~~~g~~~i~~~v~di~~~~~~l----~~~G~~~~~ 99 (128)
T TIGR03081 64 ----------------------------------------KFLEKNGGGIHHIAIEVDDIEAALETL----KEKGVRLID 99 (128)
T ss_pred ----------------------------------------HHHhcCCCceEEEEEEcCCHHHHHHHH----HHCCCcccC
Confidence 000011347889999999999999999 789999987
Q ss_pred C-CcccCCCCceEEEE--ECCCCCEEEEEe
Q 027676 183 Q-PGSIPGLNTKITSF--VDPDGWKTVLVD 209 (220)
Q Consensus 183 ~-p~~~~~~~~~~~~~--~DPdG~~iElv~ 209 (220)
+ |...++ +.+.+|+ +||||++||+++
T Consensus 100 ~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 100 EEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 5 444333 3356677 799999999985
No 21
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.75 E-value=4.6e-17 Score=128.45 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=82.9
Q ss_pred CcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCC---CCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEE
Q 027676 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (220)
Q Consensus 20 ~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~ 96 (220)
.-++++|++|.|+|+++|++||+++|||++..+...+ ++....+|+..+. .+..+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i-------------------- 63 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSL-------------------- 63 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCE--------------------
Confidence 3478999999999999999999999999987653221 0122233333210 11111
Q ss_pred EEEeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHH---HHHHHHHHH
Q 027676 97 AIATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK---SAEVVNLVT 173 (220)
Q Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a---~~~~l~~~~ 173 (220)
.+.. ...+.++.||||.|+|+++ ++++|
T Consensus 64 ---------------------------------------~~~~------~~~~~g~~Hiaf~V~d~~~l~~~~~~L---- 94 (154)
T cd07237 64 ---------------------------------------ALAE------GPGPKRIHHLMLEVTSLDDVGRAYDRV---- 94 (154)
T ss_pred ---------------------------------------EEEc------CCCCceeEEEEEEcCCHHHHHHHHHHH----
Confidence 1100 0123478999999998653 55555
Q ss_pred HHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 174 QELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 174 ~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+++|+++..++...+....+.+|++||+|+.|||+....
T Consensus 95 ~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 95 RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 899999988776655445588999999999999987643
No 22
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=4.8e-17 Score=126.78 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=83.4
Q ss_pred eeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCccc
Q 027676 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDAL 104 (220)
Q Consensus 25 ~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~ 104 (220)
+|+.|.|+|+++|++||+++|||++..+... ...|+.......++.+.+.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~------------------------- 50 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG------------------------- 50 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec-------------------------
Confidence 5999999999999999999999998766321 2445543211111111110
Q ss_pred cceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 105 GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
.....+++||||.|+|++ .++++.++++++|+++..+|
T Consensus 51 -----------------------------------------~~~~~gl~Hiaf~v~~~~-~v~~~~~~l~~~G~~~~~~p 88 (141)
T cd07258 51 -----------------------------------------PASSSHFHHVNFMVTDID-DIGKALYRIKAHDVKVVFGP 88 (141)
T ss_pred -----------------------------------------cCCCCceEEEEEECCCHH-HHHHHHHHHHHCCCcEEeCC
Confidence 012348999999999864 33444445589999998888
Q ss_pred cccCCCCceEEEEECCCCCEEEEEechhhhhh
Q 027676 185 GSIPGLNTKITSFVDPDGWKTVLVDNEDFLKE 216 (220)
Q Consensus 185 ~~~~~~~~~~~~~~DPdG~~iElv~~~~~~~~ 216 (220)
...+.+..+.+||+||+|+.|||........|
T Consensus 89 ~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~~ 120 (141)
T cd07258 89 GRHPPSDSIFFYFLDPDGITVEYSFGMEEFAE 120 (141)
T ss_pred ceECCCCCEEEEEECCCCCEEEEEeCcceecc
Confidence 76554455789999999999999987665544
No 23
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.74 E-value=1.1e-16 Score=120.43 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=76.6
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
+.+.+++|+.|.|+|+++|++||+++||+++..+.. ..+|+..+....++.+.+.
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~------------------- 56 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLT------------------- 56 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEe-------------------
Confidence 467899999999999999999999999999876521 1234432111111111111
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCC
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGG 178 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~ 178 (220)
.....++.|+||.|+|. +.++.+.++++++|+
T Consensus 57 -----------------------------------------------~~~~~~~~h~af~v~~~-~~v~~~~~~l~~~G~ 88 (121)
T cd09013 57 -----------------------------------------------ESPEAGLGHIAWRASSP-EALERRVAALEASGL 88 (121)
T ss_pred -----------------------------------------------eCCCCceEEEEEEcCCH-HHHHHHHHHHHHcCC
Confidence 01123788999999862 333333344489999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
++...+.. ++ .+..+||+|||||.||++..
T Consensus 89 ~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 89 GIGWIEGD-PG-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred ccccccCC-CC-CcceEEEECCCCCEEEEEEe
Confidence 87543322 22 23678999999999999864
No 24
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.74 E-value=1.1e-16 Score=127.18 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=74.8
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
++++|++|.|+|+++|++||+++|||++......+.+.....|+..+ ..++.+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~--~~~~~i------------------------- 54 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRK--GGVHDT------------------------- 54 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecC--CCcceE-------------------------
Confidence 68999999999999999999999999986543222221112222211 001101
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCee-
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKI- 180 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i- 180 (220)
.+. ...+.++.|+||.|+|.++ ++.+.++++++|+++
T Consensus 55 ----------------------------------~l~-------~~~~~~~~Hiaf~v~~~~~-v~~~~~~L~~~G~~~~ 92 (161)
T cd07256 55 ----------------------------------ALT-------GGNGPRLHHVAFWVPEPHN-IIRTCDLLAAAGYSDR 92 (161)
T ss_pred ----------------------------------EEe-------cCCCCceeEEEEEcCCHHH-HHHHHHHHHHcCCCcc
Confidence 110 0123478899999997332 233333448999863
Q ss_pred -ecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 181 -TRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 181 -~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
..+|+.......+++||+|||||.||+++..
T Consensus 93 ~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 93 IERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred cccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 3344432222346799999999999998644
No 25
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.73 E-value=2.2e-16 Score=126.12 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=80.9
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
+.+.+++|++|.|+|+++|++||+++|||++..+...+.+.....|+... ..+..+.+..
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~------------------ 61 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVS--NKVHDVAYTR------------------ 61 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCC--CCceeEEEec------------------
Confidence 35689999999999999999999999999987654333222222333221 0111111100
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHH---HHHHHHHHHHHH
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY---KSAEVVNLVTQE 175 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~---a~~~~l~~~~~~ 175 (220)
. +....+++.||||.|+|++ +++++| ++
T Consensus 62 -------------------------------------------~--~~~~~~~~~hiaf~v~~~~~l~~~~~~l----~~ 92 (166)
T cd09014 62 -------------------------------------------D--PAGARGRLHHLAYALDTREDVLRAADIF----LE 92 (166)
T ss_pred -------------------------------------------C--CCCCCCCceEEEEECCCHHHHHHHHHHH----HH
Confidence 0 0011236889999999754 444555 89
Q ss_pred cCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 176 LGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 176 ~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+|+++..+|.........++|++|||||.|||+..
T Consensus 93 ~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 93 NGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred cCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 99998777755332233569999999999999987
No 26
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=2.4e-16 Score=117.54 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=82.6
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+.+++|+.|.|+|+++|++||+++|||+...+...+ ...++..+ ...+++....+..
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~----~~~~~l~~~~~~~--------------- 57 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFG----SQKINLHPVGGEF--------------- 57 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeC----CEEEEEecCCCcc---------------
Confidence 357999999999999999999999999987653211 11222221 1234442110000
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC-HHHHHHHHHHHHHHcCCe
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD-VYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D-v~a~~~~l~~~~~~~G~~ 179 (220)
.+.+...+.|..|+||.+++ ++++++++ +++|++
T Consensus 58 -----------------------------------------~~~~~~~~~~~~hi~~~~~~~~~~~~~~l----~~~G~~ 92 (125)
T cd07253 58 -----------------------------------------EPAAGSPGPGSDDLCLITEPPIDELVAHL----EAHGVP 92 (125)
T ss_pred -----------------------------------------CcCccCCCCCCceEEEEecccHHHHHHHH----HHCCce
Confidence 00001234578999999985 88888888 799999
Q ss_pred eecCCcccCC--CCceEEEEECCCCCEEEEEec
Q 027676 180 ITRQPGSIPG--LNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 180 i~~~p~~~~~--~~~~~~~~~DPdG~~iElv~~ 210 (220)
+..+|...++ +..+.+||+|||||.||++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 93 IEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred eecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 9887765332 224789999999999999874
No 27
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.4e-16 Score=116.40 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=81.2
Q ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCc-eeEEEEEeecCCcccCCCCceeEEEEEeCccc
Q 027676 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS-HFVVELTYNYGVTSYDIGTGFGHFAIATEDAL 104 (220)
Q Consensus 26 Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~ 104 (220)
|++|.|.|++++++||+++|||++..+.... +.+..+++.. .+. +..+.+....+...
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~~~~~~~~~------------------ 59 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG-GGFRWVTVAP--PGSPETSLVLAPPANPAA------------------ 59 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC-CCcEEEEEeC--CCCCeeEEEEeCCCCccc------------------
Confidence 8999999999999999999999998764321 2223333322 111 33333321110000
Q ss_pred cceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 105 GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
.......+..|++|.|+|++++++++ +++|+++..++
T Consensus 60 ---------------------------------------~~~~~~~~~~~~~~~v~di~~~~~~l----~~~g~~~~~~~ 96 (119)
T cd07263 60 ---------------------------------------MSGLQPGGTPGLVLATDDIDATYEEL----KARGVEFSEEP 96 (119)
T ss_pred ---------------------------------------cccccCCCceEEEEEehHHHHHHHHH----HhCCCEEeecc
Confidence 00122347789999999999999999 78999999888
Q ss_pred cccCCCCceEEEEECCCCCEEEEEe
Q 027676 185 GSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 185 ~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
...+. .+.+|++||+||.|||++
T Consensus 97 ~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 97 REMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred ccCCC--ceEEEEECCCCCEEEEeC
Confidence 44333 488999999999999975
No 28
>PRK06724 hypothetical protein; Provisional
Probab=99.72 E-value=1.8e-16 Score=121.60 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=45.5
Q ss_pred ceeeEEEEe---CCHHHHHHHHHHHHHHcCCeeecCCcccCC--CCceEEEEECCCCCEEEEEech
Q 027676 151 AYAQVAIST---DDVYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 151 g~~Hiaf~v---~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iElv~~~ 211 (220)
|..|+||.| +|++++++++ +++|+++..+|...+. .+.+.+||+|||||.||++...
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred CceeEEEecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 678999998 5677777777 8999999888865442 3347899999999999998764
No 29
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=2.5e-16 Score=117.75 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=77.1
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCC-ceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
+++|++|.|+|+++|++||+++|||+...+...+++ .....++.......+..++|........
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--------------- 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGP--------------- 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCC---------------
Confidence 478999999999999999999999998876543221 1112222211111223344432111000
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCC
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGG 178 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~ 178 (220)
.......++.|+||.|+| ++++++++ +++|+
T Consensus 66 ------------------------------------------~~~~~~~~~~hi~f~v~~~~~~~~~~~~~----~~~g~ 99 (126)
T cd08346 66 ------------------------------------------KGRRGPGQIHHIAFSVPSEASLDAWRERL----RAAGV 99 (126)
T ss_pred ------------------------------------------CCCCCCCcEEEEEEEcCCHHHHHHHHHHH----HHcCC
Confidence 001122368899999996 46666666 89999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEE
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLV 208 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 208 (220)
++..++.. ...+.+||+||+||.|||+
T Consensus 100 ~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 100 PVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cccceEee---cceEEEEEECCCCCEEEeC
Confidence 98764433 2348899999999999985
No 30
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.71 E-value=4.5e-16 Score=118.92 Aligned_cols=115 Identities=26% Similarity=0.329 Sum_probs=80.1
Q ss_pred eeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCccc
Q 027676 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDAL 104 (220)
Q Consensus 25 ~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~ 104 (220)
+|++|.|+|+++|++||+++||+++......+ +....+|+..+ +.++.+.+..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~------------------------ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCD--EDHHDLALFP------------------------ 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcC--CCcceEEEEc------------------------
Confidence 59999999999999999999999987664333 22334454432 1111122110
Q ss_pred cceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHH---HHHHHHHHHHHHcCCeee
Q 027676 105 GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY---KSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~---a~~~~l~~~~~~~G~~i~ 181 (220)
.....++.|++|.|+|++ ++++++ +++|+++.
T Consensus 54 -----------------------------------------~~~~~~~~hl~~~v~d~~~~~~~~~~l----~~~G~~i~ 88 (131)
T cd08343 54 -----------------------------------------GPERPGLHHVAFEVESLDDILRAADRL----AANGIQIE 88 (131)
T ss_pred -----------------------------------------CCCCCCeeEEEEEcCCHHHHHHHHHHH----HHcCCeeE
Confidence 001347889999999975 445555 89999998
Q ss_pred cCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 182 RQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 182 ~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
.+|...+.+..++++|+|||||.|||++..
T Consensus 89 ~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 89 FGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred ECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 877654443457899999999999999764
No 31
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.71 E-value=4.3e-16 Score=120.46 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=80.8
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
.+++|++|.|+|+++|++||+++||+++..+.. ..+++..+ +..+.+....+.
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~----------------- 55 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDI----------------- 55 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCC-----------------
Confidence 579999999999999999999999999875421 23344321 122222110000
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC--CHHHHHHHHHHHHHHcCCe
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DVYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~ 179 (220)
.......++.|++|.++ |++++++++ +++|++
T Consensus 56 ------------------------------------------~~~~~~~~~~hiaf~v~~~dv~~~~~~l----~~~G~~ 89 (139)
T PRK04101 56 ------------------------------------------PRNEIHQSYTHIAFSIEEEDFDHWYQRL----KENDVN 89 (139)
T ss_pred ------------------------------------------CCccCCCCeeEEEEEecHHHHHHHHHHH----HHCCce
Confidence 00111346789999998 788888888 799999
Q ss_pred eecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 180 ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 180 i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+..+|...+. ..+.+||+|||||.|||.+..
T Consensus 90 i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 90 ILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred EcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 8776654433 348899999999999998753
No 32
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.71 E-value=1.1e-16 Score=119.52 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=38.8
Q ss_pred ceeeEEEEeCC---HHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEE
Q 027676 151 AYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 207 (220)
Q Consensus 151 g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 207 (220)
+..|++|.+.+ +++++++| ++.|+++..+|.....+....+|++||+||.|||
T Consensus 73 ~~~~i~~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 73 GGHHIAFLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp TSEEEEEEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cceeEEEEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 34566666665 44455555 8999999999876555555667899999999997
No 33
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.70 E-value=6.3e-16 Score=120.72 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=79.2
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
.+++|+.|.|+|+++|++||+++|||++..+.. . ...|+..+. .+..+.+.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~l~~~~--~~~~~~l~---------------------- 53 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----D-QMAFLRCNS--DHHSIAIA---------------------- 53 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----C-eEEEEECCC--CcceEEEc----------------------
Confidence 589999999999999999999999999865421 1 134444321 11111110
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
....+++.|+||.|+|++++. ++.++++++|+++.
T Consensus 54 --------------------------------------------~~~~~~~~hiaf~v~d~~~l~-~~~~~l~~~Gi~~~ 88 (144)
T cd07239 54 --------------------------------------------RGPHPSLNHVAFEMPSIDEVM-RGIGRMIDKGIDIL 88 (144)
T ss_pred --------------------------------------------cCCCCceEEEEEECCCHHHHH-HHHHHHHHcCCcee
Confidence 001236789999999986664 23334489999998
Q ss_pred cCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 182 RQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 182 ~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
.++.....+..+++||+||+||.|||++..
T Consensus 89 ~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 89 WGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred eCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 776443222346789999999999999863
No 34
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=6.1e-16 Score=122.65 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=79.1
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
+++||+|.|+|+++|++||+++|||++..+.. + ...+...+. ..++.|.+........
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~---------------- 58 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPR---------------- 58 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCC----------------
Confidence 47899999999999999999999999976532 1 222322111 1234455532110000
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCCe
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~ 179 (220)
......++.||||.|+| +++++++| +++|++
T Consensus 59 ------------------------------------------~~~~~~~l~Hiaf~v~d~~dvd~~~~~L----~~~Gv~ 92 (157)
T cd08347 59 ------------------------------------------GRPGAGTVHHVAFRVPDDEELEAWKERL----EALGLP 92 (157)
T ss_pred ------------------------------------------CcccCCceEEEEEECCCHHHHHHHHHHH----HHCCCC
Confidence 01122478899999999 67777777 799998
Q ss_pred eecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 180 ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 180 i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+.. +... ...+.+||+|||||.|||++..
T Consensus 93 ~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 93 VSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred ccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 643 3222 2347899999999999999975
No 35
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.70 E-value=4.7e-16 Score=116.52 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=75.7
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+++++|+.|.|+|+++|++||+++|||++..+. + ..+|+.......+..+.+.
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~~~~~~~~~~~~~~~~--------------------- 54 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEED---D---DRIYLRGLEEFIHHSLVLT--------------------- 54 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccC---C---CeEEEEecCCCceEEEEEe---------------------
Confidence 468999999999999999999999999986542 1 1233321100011111110
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC---CHHHHHHHHHHHHHHcC
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEVVNLVTQELG 177 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~---Dv~a~~~~l~~~~~~~G 177 (220)
.....+..|++|.|. |++++++++ +++|
T Consensus 55 ---------------------------------------------~~~~~~~~hi~~~v~~~~dv~~~~~~l----~~~g 85 (121)
T cd07266 55 ---------------------------------------------KAPVAGLGHIAFRVRSEEDLDKAEAFF----QELG 85 (121)
T ss_pred ---------------------------------------------eCCCCceeEEEEECCCHHHHHHHHHHH----HHcC
Confidence 011236789999995 555566666 7999
Q ss_pred CeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 178 GKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 178 ~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+++...|.....+..+.+|+.|||||.||++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 86 LPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 998776433222223789999999999999865
No 36
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=5.1e-16 Score=116.60 Aligned_cols=125 Identities=23% Similarity=0.317 Sum_probs=82.9
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCC-CCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
++|++|+|+|++++++||+++|||+.......+ .+.+..+++.. ++..++|...........
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~~~~~~------------- 63 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL----GNVQIELIEPLDDDSPIA------------- 63 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc----CCEEEEEEEECCCCCcHH-------------
Confidence 579999999999999999999999997654332 22344555543 233444442211100000
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.-....+.|..|+||.|+|++++++++ +++|+++..
T Consensus 64 ----------------------------------------~~~~~~~~g~~h~~f~v~d~~~~~~~l----~~~G~~~~~ 99 (128)
T cd07249 64 ----------------------------------------KFLEKRGEGLHHIAFEVDDIDAALARL----KAQGVRLLQ 99 (128)
T ss_pred ----------------------------------------HHHhcCCCceEEEEEEeCCHHHHHHHH----HHCCCeeec
Confidence 000123458899999999999999999 799999998
Q ss_pred CCcccCCCCceEEEEECCC--CCEEEEEe
Q 027676 183 QPGSIPGLNTKITSFVDPD--GWKTVLVD 209 (220)
Q Consensus 183 ~p~~~~~~~~~~~~~~DPd--G~~iElv~ 209 (220)
+|...+.++..++|+.||| |++|||++
T Consensus 100 ~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 100 EGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred cCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 8764333333445555555 99999975
No 37
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.70 E-value=5.1e-16 Score=116.85 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=76.1
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
++.|++|.|+|+++|++||+++|||++..+. .. ..+|+..+ ..++.+.|..
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~--~~~~~~~l~~---------------------- 52 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP---ED--GALYLRMD--DRAWRIAVHP---------------------- 52 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC---CC--CeEEEEcc--CCceEEEEEe----------------------
Confidence 6899999999999999999999999886542 11 13344321 1222222210
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCCe
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~ 179 (220)
....++.|++|.+++ +++.+++| +++|++
T Consensus 53 --------------------------------------------~~~~~~~~~~f~v~~~~dl~~~~~~l----~~~Gv~ 84 (120)
T cd07252 53 --------------------------------------------GEADDLAYAGWEVADEAALDALAARL----RAAGVA 84 (120)
T ss_pred --------------------------------------------CCCCceeEEEEEECCHHHHHHHHHHH----HHcCCe
Confidence 011367799999986 66666666 899999
Q ss_pred eecCCccc--CCCCceEEEEECCCCCEEEEEec
Q 027676 180 ITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 180 i~~~p~~~--~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+...+... +.+..+++||+|||||.|||+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 85 VEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred EEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 98765321 12234789999999999999875
No 38
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=1.6e-15 Score=114.03 Aligned_cols=117 Identities=21% Similarity=0.329 Sum_probs=78.6
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
++++|+.|.|+|++++++||+++|||++..+. + ..++++.+ +....+.+....+..
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~--~~~~~l~l~~~~~~~---------------- 56 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTG--GKRPLLVLEEDPDAP---------------- 56 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecC--CCeEEEEEEeCCCCC----------------
Confidence 57999999999999999999999999998752 1 23444432 123334443211100
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCC
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGG 178 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~ 178 (220)
.......++.|+||.|+| ++++++++ +++|+
T Consensus 57 ------------------------------------------~~~~~~~~~~hi~f~v~~~~~v~~~~~~l----~~~g~ 90 (125)
T cd07255 57 ------------------------------------------PAPPGATGLYHFAILLPSRADLAAALRRL----IELGI 90 (125)
T ss_pred ------------------------------------------cccCCCCcEEEEEEECCCHHHHHHHHHHH----HHcCC
Confidence 001223478899999986 55555555 89999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
++..+. .. ...+.+||+|||||.|||....
T Consensus 91 ~~~~~~-~~--~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 91 PLVGAS-DH--LVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred ceeccc-cc--cceeEEEEECCCCCEEEEEEec
Confidence 875432 22 2237899999999999998764
No 39
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=7.7e-16 Score=116.25 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=77.2
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
++++|+.|.|+|+++|++||+++||++..... +.+ .++..+ .+..+.+...
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~---~~~~l~~~~~-------------------- 53 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLD---NGVSLDFAQP-------------------- 53 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcC---CCcEEEEecC--------------------
Confidence 68999999999999999999999999986531 111 122211 1122222100
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC--CHHHHHHHHHHHHHHcCCe
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DVYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~ 179 (220)
....+..|+||.++ |++++++++ +++|++
T Consensus 54 ---------------------------------------------~~~~~~~h~a~~v~~~dl~~~~~~l----~~~G~~ 84 (123)
T cd08351 54 ---------------------------------------------DGEIPPQHYAFLVSEEEFDRIFARI----RERGID 84 (123)
T ss_pred ---------------------------------------------CCCCCcceEEEEeCHHHHHHHHHHH----HHcCCc
Confidence 00124578999987 578888888 799999
Q ss_pred eecCCcccC------CCCceEEEEECCCCCEEEEEec
Q 027676 180 ITRQPGSIP------GLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 180 i~~~p~~~~------~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+..+|...+ ..+.+.+||+|||||.|||+++
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 85 YWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 987765421 2234899999999999999986
No 40
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.69 E-value=1.2e-15 Score=113.09 Aligned_cols=54 Identities=33% Similarity=0.438 Sum_probs=47.1
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
+..|++|.|+|++++++++ +++|+++..+|...++ ..+.++|+|||||.|||++
T Consensus 61 ~~~~~~f~v~di~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CeEEEEEEeCCHHHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 5668999999999999999 7999999988876654 3478999999999999975
No 41
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1.5e-15 Score=114.67 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=81.4
Q ss_pred eeeeEEEEECCHHHHHHHHHHhc---CCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEE
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~ 99 (220)
+++|++|.|+|++++++||+++| ||++..+.. . ...|... ..+..++|.......+.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~---~~~~~i~l~~~~~~~~~------------ 60 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG---DGGTYLVLQQADGESAG------------ 60 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec---CCceEEEEEecccCCCc------------
Confidence 47999999999999999999999 999887642 1 1122221 12344555422110000
Q ss_pred eCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHc
Q 027676 100 TEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQEL 176 (220)
Q Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~ 176 (220)
.....++|+.|+||.|+| ++++++++ +++
T Consensus 61 --------------------------------------------~~~~~~~g~~hia~~v~~~~d~~~~~~~l----~~~ 92 (128)
T cd07242 61 --------------------------------------------RHDRRNPGLHHLAFRAPSREAVDELYARL----AKR 92 (128)
T ss_pred --------------------------------------------ccccCCcCeeEEEEEcCCHHHHHHHHHHH----HHc
Confidence 001224578899999986 66666777 799
Q ss_pred CCeeecCCccc--CCCCceEEEEECCCCCEEEEEec
Q 027676 177 GGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 177 G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
|+++...+... .....+.+|++|||||.|||+.+
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 93 GAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99999877642 12235789999999999999864
No 42
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.69 E-value=4.7e-16 Score=113.45 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=78.8
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCcc
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDA 103 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~ 103 (220)
++|++|.|+|++++++||+++||+++..+...+ ....++..++ ...+++....+...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~---~~~i~l~~~~~~~~----------------- 57 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGD---GPQLHLIEEDPPDA----------------- 57 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCC---CcEEEEEecCCCcc-----------------
Confidence 589999999999999999999999887553221 1223443321 12333322111000
Q ss_pred ccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
....+.+..|++|.|+|++++++++ +++|+++..+
T Consensus 58 -----------------------------------------~~~~~~~~~~~~~~v~d~~~~~~~l----~~~g~~~~~~ 92 (114)
T cd07245 58 -----------------------------------------LPEGPGRDDHIAFRVDDLDAFRARL----KAAGVPYTES 92 (114)
T ss_pred -----------------------------------------ccCCCcccceEEEEeCCHHHHHHHH----HHcCCCcccc
Confidence 0112346789999999999999999 7899999887
Q ss_pred CcccCCCCceEEEEECCCCCEEEE
Q 027676 184 PGSIPGLNTKITSFVDPDGWKTVL 207 (220)
Q Consensus 184 p~~~~~~~~~~~~~~DPdG~~iEl 207 (220)
+... ...+.++|.||+|+.|||
T Consensus 93 ~~~~--~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 93 DVPG--DGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred cCCC--CCccEEEEECCCCCEEeC
Confidence 7642 234789999999999996
No 43
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=7.7e-16 Score=116.79 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=76.9
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+.++.|++|.|+|+++|++||+++|||++..+. + ...|+..+. .++.+.+..
T Consensus 4 ~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~--~----~~~~l~~~~--~~~~i~l~~-------------------- 55 (124)
T cd08361 4 LQDIAYVRLGTRDLAGATRFATDILGLQVAERT--A----KATYFRSDA--RDHTLVYIE-------------------- 55 (124)
T ss_pred EEEeeEEEEeeCCHHHHHHHHHhccCceeccCC--C----CeEEEEcCC--ccEEEEEEe--------------------
Confidence 478999999999999999999999999986542 1 133444321 122222210
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcC
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELG 177 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G 177 (220)
...+..|+||.|+| ++++++++ +++|
T Consensus 56 -----------------------------------------------~~~~~~~iaf~v~~~~dv~~~~~~l----~~~G 84 (124)
T cd08361 56 -----------------------------------------------GDPAEQASGFELRDDDALESAATEL----EQYG 84 (124)
T ss_pred -----------------------------------------------CCCceEEEEEEECCHHHHHHHHHHH----HHcC
Confidence 00245689999987 66666666 8999
Q ss_pred CeeecCCcccC--CCCceEEEEECCCCCEEEEEech
Q 027676 178 GKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 178 ~~i~~~p~~~~--~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+++...+.... .+..+++||+|||||.||++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 85 HEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 99877653211 12246789999999999998753
No 44
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.1e-15 Score=114.75 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=47.0
Q ss_pred CceeeEEEEeCCHHHHHHHHHHHHHHcCC-eeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 150 NAYAQVAISTDDVYKSAEVVNLVTQELGG-KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 150 ~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~-~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.+..|++|.|+|+++++++| +++|+ ++..+|...+. +.+.++|+|||||+|||.+.
T Consensus 63 ~~~~~l~~~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 63 SNNFELYFEEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred CCceEEEEEehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 34579999999999999999 68875 78888876654 34889999999999999874
No 45
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.69 E-value=1.3e-15 Score=112.93 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=78.2
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
++++|+.|.|+|++++++||+++|||++..+.. ..+|+..+. ..++.+.+..
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~--------------------- 52 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTE--------------------- 52 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEe---------------------
Confidence 579999999999999999999999999987531 123443321 1122222210
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCC
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGG 178 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~ 178 (220)
....++.|++|.|++ +++.++++ +++|+
T Consensus 53 ---------------------------------------------~~~~~~~h~~~~v~~~~~v~~~~~~l----~~~g~ 83 (117)
T cd07240 53 ---------------------------------------------GDEPGVDALGFEVASEEDLEALAAHL----EAAGV 83 (117)
T ss_pred ---------------------------------------------CCCCCceeEEEEcCCHHHHHHHHHHH----HHcCC
Confidence 011367899999985 55566656 78999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
++...+...++ ..+.+||.||+||.||++..
T Consensus 84 ~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 84 APEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred ceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 99887754443 24789999999999999965
No 46
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=1.6e-15 Score=116.15 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=42.3
Q ss_pred ceeeEEEEeC--CHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 151 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 151 g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
++.||||.|+ |+++++++| +++|+++..+. +.+.+.++.+||+|||||.|||...
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l----~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERI----KALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHH----HHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecC
Confidence 6789999998 566666666 89999876433 2223335899999999999999975
No 47
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=6.3e-15 Score=110.65 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=48.0
Q ss_pred CceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 150 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 150 ~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.+..|+||.|+|++++++++ +++|+++..+|...+.+ .+.++++|||||.|+|.++
T Consensus 67 ~~~~~~~~~v~d~d~~~~~l----~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 67 AGTQGVYVVVDDVDAHYERA----RAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGTY 122 (122)
T ss_pred CceEEEEEEECCHHHHHHHH----HHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEecC
Confidence 45678999999999999999 78999999998876643 4789999999999999753
No 48
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=8e-15 Score=109.27 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=81.3
Q ss_pred EEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCccccc
Q 027676 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDALGM 106 (220)
Q Consensus 27 i~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 106 (220)
+.|+|+|+++|++||+++||+++..+...+.+.+...++..+ ...+.+.......
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~--------------------- 59 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEH--------------------- 59 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCccc---------------------
Confidence 468999999999999999999998765434443333344332 1223332110000
Q ss_pred eEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcc
Q 027676 107 KLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS 186 (220)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~ 186 (220)
. .+.....+..|++|.|+|++++++++ .+.|+++..+|..
T Consensus 60 -----------------------------------~-~~~~~~~~~~~~~~~v~d~~~~~~~l----~~~G~~~~~~~~~ 99 (122)
T cd07246 60 -----------------------------------G-SPASWGGTPVSLHLYVEDVDATFARA----VAAGATSVMPPAD 99 (122)
T ss_pred -----------------------------------C-CCCCCCCceEEEEEEeCCHHHHHHHH----HHCCCeEecCccc
Confidence 0 00112335679999999999999999 6899999988875
Q ss_pred cCCCCceEEEEECCCCCEEEEEec
Q 027676 187 IPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 187 ~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.+. +.+.++++|||||.|||.+.
T Consensus 100 ~~~-g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 100 QFW-GDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred ccc-cceEEEEECCCCCEEEEecC
Confidence 544 34789999999999999873
No 49
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.67 E-value=5e-15 Score=112.96 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=80.6
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
+++|+.|.|+|+++|++||+++|||++..+... ...+|+..+. ..+..+.+....+.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~------------------ 57 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPA------------------ 57 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCC------------------
Confidence 589999999999999999999999998765321 1234444320 12223333211100
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.......++.|+||.|+|+++ ++.+.+++.++|+++..
T Consensus 58 -----------------------------------------~~~~~~~~~~h~~f~v~~~~~-v~~~~~~l~~~G~~~~~ 95 (134)
T cd08348 58 -----------------------------------------APPPGPAGLNHIAFEVDSLDD-LRDLYERLRAAGITPVW 95 (134)
T ss_pred -----------------------------------------CCCCCCCCceEEEEEeCCHHH-HHHHHHHHHHCCCCccc
Confidence 000123478899999998653 22233333789999876
Q ss_pred CCcccCCCCceEEEEECCCCCEEEEEechhhhh
Q 027676 183 QPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 215 (220)
Q Consensus 183 ~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~~~ 215 (220)
++.. + ..+.+|++||+||.|||++...-+.
T Consensus 96 ~~~~--~-~~~~~~~~DP~G~~ie~~~~~~~~~ 125 (134)
T cd08348 96 PVDH--G-NAWSIYFRDPDGNRLELFVDTPWYV 125 (134)
T ss_pred cCCC--C-ceeEEEEECCCCCEEEEEEcCCCCh
Confidence 5532 2 2478999999999999998765443
No 50
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.66 E-value=2.2e-15 Score=115.50 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=44.1
Q ss_pred CceeeEEEEeCC--HHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 150 NAYAQVAISTDD--VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 150 ~g~~Hiaf~v~D--v~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
.++.||||.|++ +++++++| +++|+++..++..... ..+.+||+|||||.|||.+..
T Consensus 58 ~~~~hiaf~v~~~dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 58 QSYTHIAFTIEDSEFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred ccceEEEEEecHHHHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 378899999985 66777776 7999998765543222 347899999999999999864
No 51
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.66 E-value=4.8e-15 Score=110.37 Aligned_cols=110 Identities=19% Similarity=0.309 Sum_probs=75.6
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+.+++|+.|.|+|+++|++||++ |||+...+. + + ..|+..+. ..+..+.+.
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~--~-~---~~~~~~~~-~~~~~~~~~--------------------- 51 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAART--D-D---ELYYRGYG-TDPFVYVAR--------------------- 51 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEec--C-C---eEEEecCC-CccEEEEcc---------------------
Confidence 36899999999999999999999 999986552 1 1 23333210 111111000
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCee
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKI 180 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i 180 (220)
....+++.|++|.|+|.+++.+.+ ++.|+++
T Consensus 52 ---------------------------------------------~~~~~~~~~~af~v~~~~~~~~~~----~~~g~~~ 82 (113)
T cd07267 52 ---------------------------------------------KGEKARFVGAAFEAASRADLEKAA----ALPGASV 82 (113)
T ss_pred ---------------------------------------------cCCcCcccEEEEEECCHHHHHHHH----HcCCCee
Confidence 011236789999999998877777 6889887
Q ss_pred ecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 181 TRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
...+. .|. +.+.+||+|||||.|||+..
T Consensus 83 ~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 83 IDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 75543 333 34789999999999999864
No 52
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.66 E-value=3.1e-15 Score=129.77 Aligned_cols=119 Identities=20% Similarity=0.277 Sum_probs=78.3
Q ss_pred CcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCce-eEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 20 ~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
..++++||+|.|+|+++|++||+++|||++..+...+.+.. ...|+..+. .+..+ +
T Consensus 142 ~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------------~- 198 (303)
T TIGR03211 142 GARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDI--------------------A- 198 (303)
T ss_pred CceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCccc--------------------c-
Confidence 45789999999999999999999999999876543332221 122332110 00000 0
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHH---HHHHHHHHHHH
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK---SAEVVNLVTQE 175 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a---~~~~l~~~~~~ 175 (220)
++. ....++++||||.|+|+++ ++++| ++
T Consensus 199 ------------------------~~~--------------------~~~~g~~~Hiaf~v~~~~~v~~~~~~l----~~ 230 (303)
T TIGR03211 199 ------------------------FVG--------------------DPEPGKLHHVSFFLDSWEDVLKAADVM----SK 230 (303)
T ss_pred ------------------------eec--------------------CCCCCceEEEEEEcCCHHHHHHHHHHH----Hh
Confidence 000 0011238899999998543 44455 89
Q ss_pred cCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 176 LGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 176 ~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
+|+++..+|...+....+++||+|||||.||++.
T Consensus 231 ~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 231 NDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred CCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 9999988776543223478999999999999984
No 53
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.66 E-value=3.3e-15 Score=128.90 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=80.1
Q ss_pred CcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEE
Q 027676 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (220)
Q Consensus 20 ~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~ 99 (220)
..++++|++|.|+|+++|++||+++|||++..+...+.+.+...|+... ..++.+
T Consensus 133 ~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------------------- 187 (294)
T TIGR02295 133 SPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRK--GGVHDI----------------------- 187 (294)
T ss_pred cceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecC--CCcCce-----------------------
Confidence 4589999999999999999999999999987654333332222332210 000000
Q ss_pred eCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCe
Q 027676 100 TEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGK 179 (220)
Q Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~ 179 (220)
.+. ..++.+++|+||.|+|.++ +..+.++++++|++
T Consensus 188 ------------------------------------~~~-------~~~~~~~~Hiaf~v~d~~~-v~~~~~~l~~~G~~ 223 (294)
T TIGR02295 188 ------------------------------------ALT-------NGNGPRLHHIAYWVHDPLN-IIKACDILASAGLS 223 (294)
T ss_pred ------------------------------------Eee-------cCCCCceeeEEEEcCCHHH-HHHHHHHHHhCCCC
Confidence 000 0123478999999999543 23333444899998
Q ss_pred --eecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 180 --ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 180 --i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+...|.....+...++|++||+||.||++...
T Consensus 224 ~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 224 DSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred cccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 65566543222346799999999999998754
No 54
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.65 E-value=5.2e-15 Score=110.38 Aligned_cols=112 Identities=23% Similarity=0.330 Sum_probs=75.6
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
.+++|+.|.|+|+++|++||+++|||+...... ...++..+ ....+.+.+.
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~-~~~~~~~~~~---------------------- 52 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRAT-GSEHHILRLR---------------------- 52 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECC-CCccEEEEec----------------------
Confidence 579999999999999999999999999875421 12333321 1111111110
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcCC
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELGG 178 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~ 178 (220)
....+++.|++|.|++ ++++++++ +++|+
T Consensus 53 --------------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~l----~~~G~ 84 (120)
T cd08362 53 --------------------------------------------RSDRNRLDVVSFSVASRADVDALARQV----AARGG 84 (120)
T ss_pred --------------------------------------------cCCCCCCceEEEEeCCHHHHHHHHHHH----HHcCC
Confidence 0012256799999964 55555555 89999
Q ss_pred eeecCCcccC-CCCceEEEEECCCCCEEEEEec
Q 027676 179 KITRQPGSIP-GLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 179 ~i~~~p~~~~-~~~~~~~~~~DPdG~~iElv~~ 210 (220)
++..+|.... .+..+.++|+||+||.|||+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 85 TVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred ceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 9987764321 1235789999999999999875
No 55
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=6.4e-15 Score=110.62 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=42.2
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCC--CCceEEEEECCCCCEEEEEe
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iElv~ 209 (220)
+..||||.|+|. +.++.+.++++++|+++..+|...+. ...+.+||+|||||.|||+.
T Consensus 64 ~~~hi~f~v~~~-~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 64 NGTHVAFAAPSR-EAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred CceEEEEECCCH-HHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 356999999984 23333444448999999888765543 23367999999999999973
No 56
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.64 E-value=9.8e-15 Score=108.87 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=45.5
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
.|++|.|+|++++++++ +++|+++..+|...+.+ .+.++|+|||||.|||+|
T Consensus 68 ~~~~~~v~did~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 68 LILNFEVDDVDAEYERL----KAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred EEEEEEECCHHHHHHHH----HhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 38999999999999999 78999998888766543 488999999999999986
No 57
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=7.3e-15 Score=110.22 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=46.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
..|++|.|+|++++++++ +++|+++..+|...+.+ .+.++++|||||.|||+++
T Consensus 72 ~~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 72 GFEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred cEEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 358999999999999999 79999999888766654 4788999999999999874
No 58
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.63 E-value=1.4e-14 Score=107.15 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=47.1
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
...|++|.|+|++++++++ +++|+++..+|...+. +.+.+|+.||+||.|||+++
T Consensus 57 ~~~~i~~~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 57 VVPDLSIEVDDVDAALARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCCEEEEEeCCHHHHHHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 3468999999999999999 7999999888876554 34789999999999999976
No 59
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.63 E-value=6.8e-15 Score=110.76 Aligned_cols=108 Identities=28% Similarity=0.407 Sum_probs=73.4
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~ 102 (220)
+++|+.|.|+|++++++||+++|||++..... + .+++..+ ...+.+....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~----~~~~~l~~~~-------------------- 50 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG----DLWLCLSVDA-------------------- 50 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC----CEEEEEecCC--------------------
Confidence 47899999999999999999999999876532 1 1233221 1111110000
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEe--CCHHHHHHHHHHHHHHcCCee
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST--DDVYKSAEVVNLVTQELGGKI 180 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v--~Dv~a~~~~l~~~~~~~G~~i 180 (220)
.....++..|+||.+ +|++++++++ +++|+++
T Consensus 51 ------------------------------------------~~~~~~~~~hi~f~v~~~dl~~~~~~l----~~~G~~~ 84 (121)
T cd07244 51 ------------------------------------------NVGPAKDYTHYAFSVSEEDFASLKEKL----RQAGVKE 84 (121)
T ss_pred ------------------------------------------CCCCCCCeeeEEEEeCHHHHHHHHHHH----HHcCCcc
Confidence 001123678999999 4577777777 7999998
Q ss_pred ecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 181 TRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
..++.. + .+.+||.|||||.|||+..
T Consensus 85 ~~~~~~-~---~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 85 WKENTS-E---GDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred cCCCCC-C---ccEEEEECCCCCEEEEEeC
Confidence 765442 1 3689999999999999974
No 60
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.62 E-value=1.2e-14 Score=106.39 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=46.5
Q ss_pred CCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEE
Q 027676 149 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 208 (220)
Q Consensus 149 ~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 208 (220)
..+..|++|.|+|++++++++ +++|+++..+|...+.+ .+.++++|||||.|||+
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERL----KELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHH----HHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHH----HHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 457889999999999999999 79999999988875553 48899999999999986
No 61
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=1e-14 Score=109.28 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=42.6
Q ss_pred ceeeEE--EEeCCHHHHHHHHHHHHHHcCCeeecCCccc-CC--CCceEEEEECCCCCEEEEEec
Q 027676 151 AYAQVA--ISTDDVYKSAEVVNLVTQELGGKITRQPGSI-PG--LNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 151 g~~Hia--f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~-~~--~~~~~~~~~DPdG~~iElv~~ 210 (220)
+..|++ |.++|+++++++| +++|+++..+|... ++ +..+.+||+|||||.|||..+
T Consensus 65 ~~~h~~~~~~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 65 PVPHFGLILSEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred CCceEEEEEeHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 455765 5668888888888 79999999877532 11 234889999999999999863
No 62
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.60 E-value=2.2e-14 Score=105.89 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=41.5
Q ss_pred CceeeEEEEeC--CHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 150 NAYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 150 ~g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.+..|+||.|+ |++++++++ +++|+++...+... ....+.+|++|||||.|||++-
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l----~~~G~~~~~~~~~~-~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERL----KALGVEMKPERPRV-QGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHH----HHcCCccCCCcccc-CCCceEEEEECCCCCEEEEEeC
Confidence 35789999995 566666666 79999986543322 2224789999999999999863
No 63
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.60 E-value=2.9e-14 Score=122.95 Aligned_cols=118 Identities=20% Similarity=0.296 Sum_probs=78.5
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCC--C-ceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEE
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE--E-KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~--~-~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~ 97 (220)
..+++|++|.|+|+++|++||+++|||++..+...+. + .+..+|+..++ .++.+.+.
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~------------------ 199 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFA------------------ 199 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEe------------------
Confidence 4689999999999999999999999999876532211 1 11233443211 11111110
Q ss_pred EEeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHH---HHHHHHHHHH
Q 027676 98 IATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK---SAEVVNLVTQ 174 (220)
Q Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a---~~~~l~~~~~ 174 (220)
. .....+++||||.|+|+++ ++++| +
T Consensus 200 ---------------------------~--------------------~~~~~~~~Hiaf~v~d~~~v~~~~~~l----~ 228 (286)
T TIGR03213 200 ---------------------------A--------------------GPSEKRLNHLMLEVDTLDDVGLALDRV----D 228 (286)
T ss_pred ---------------------------c--------------------CCCCCceEEEEEEcCCHHHHHHHHHHH----H
Confidence 0 0123478999999999765 45555 8
Q ss_pred HcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 175 ELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 175 ~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
++|+ +...|...+.+..+++|++||+|+.||+...
T Consensus 229 ~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 229 ADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 9999 5555554433445789999999999999863
No 64
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=3.9e-14 Score=105.69 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=77.7
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCcc
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDA 103 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~ 103 (220)
+.|+.|+|.|+++|++||+++|||++..+ +++. .+++..++ . ..+.+....... ..+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~--~-~~~~l~~~~~~~--~~~------------- 57 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGG--R-GMLLLFDPGATS--TPG------------- 57 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCC--C-cEEEEEecCCcc--ccc-------------
Confidence 46899999999999999999999998764 2222 34444322 1 233332111000 000
Q ss_pred ccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC--CHHHHHHHHHHHHHHcCCeee
Q 027676 104 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
...+.....+..|+||.++ |++++++++ .++|+++.
T Consensus 58 --------------------------------------~~~~~~~~~~~~~~~~~v~~~dl~~~~~~l----~~~g~~~~ 95 (122)
T cd08354 58 --------------------------------------GEIPPHGGSGPGHFAFAIPAEELAEWEAHL----EAKGVAIE 95 (122)
T ss_pred --------------------------------------CCCCCCCCCCccEEEEEcCHHHHHHHHHHH----HhcCCcee
Confidence 0000112347889999995 677777777 79999987
Q ss_pred cCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 182 RQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 182 ~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.++.. ....+.+||+|||||.|||+++
T Consensus 96 ~~~~~--~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 96 SEVQW--PRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred ccccC--CCCeeEEEEECCCCCEEEEecC
Confidence 76542 2234789999999999999864
No 65
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.60 E-value=2.6e-14 Score=124.03 Aligned_cols=116 Identities=21% Similarity=0.282 Sum_probs=77.9
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+++++|++|.|+|+++|++||+++|||++..+.. . .+++.......+..+.+.
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~---~~~~~~~~~~~~~~~~l~--------------------- 54 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG---Q---RVYLKAWDEWDHYSVILT--------------------- 54 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---c---eEEEEeccccccceEeec---------------------
Confidence 5789999999999999999999999999876531 1 222221100011111110
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC---CHHHHHHHHHHHHHHcC
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEVVNLVTQELG 177 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~---Dv~a~~~~l~~~~~~~G 177 (220)
.....++.|+||.|+ |+++++++| +++|
T Consensus 55 ---------------------------------------------~~~~~g~~hiaf~v~~~~dl~~~~~~l----~~~G 85 (303)
T TIGR03211 55 ---------------------------------------------EADTAGLDHMAFKVESEADLERLVKRL----EAYG 85 (303)
T ss_pred ---------------------------------------------cCCCCceeEEEEEeCCHHHHHHHHHHH----HHcC
Confidence 011236889999998 455556666 8999
Q ss_pred CeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 178 GKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 178 ~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+++...+.....+.++.+||+|||||.|||++...
T Consensus 86 ~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 86 VGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred CCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 99876654211222377999999999999998654
No 66
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.59 E-value=6e-14 Score=104.97 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=44.3
Q ss_pred CceeeEEEEeCC---HHHHHHHHHHHHHHcCCeeecCCcccCC-CCceEEEEECCCCCEEEEEech
Q 027676 150 NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 150 ~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~i~~~p~~~~~-~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+++.|+||.|+| +++.++++ .++|+++..+|..... ...+.+|++||+||.|||+...
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 478899999998 45555555 8999999877654322 2347899999999999999753
No 67
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.59 E-value=5.4e-14 Score=105.41 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=43.0
Q ss_pred ceeeEEEEeC---CHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEE
Q 027676 151 AYAQVAISTD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 208 (220)
Q Consensus 151 g~~Hiaf~v~---Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 208 (220)
+..|++|.++ |++++++++ +++|+++..+|...+.+ .+.++|+|||||.|||+
T Consensus 66 ~~~~l~~~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 66 HRIALAFLCETPAEVDALYAEL----VGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CcEEEEEEcCCHHHHHHHHHHH----HHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 4568888876 677888887 79999998888765543 47899999999999997
No 68
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.59 E-value=5.9e-14 Score=104.21 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=37.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
++|.++|++++++++ +++|+++..++.. . ..+.+||.|||||.|||..
T Consensus 61 ~~~~~~d~~~~~~~l----~~~Gi~~~~~~~~--~-~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 61 FGIFEDDFAAFARHL----EAAGVALAAAPPG--A-DPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred EEeEhhhHHHHHHHH----HHcCCceecCCCc--C-CCCEEEEECCCCCEEEEec
Confidence 445568898888888 7899998876532 2 2357999999999999985
No 69
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=4.8e-14 Score=104.47 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=42.9
Q ss_pred CceeeEEEEeCC---HHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 150 NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 150 ~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
.+..|+||.|+| ++++++++ +++|+++..+|...+.+ +.++|+|||||.|||+.
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~----~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEW----QAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVFA 114 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHH----HHCCCeEecCccccCCc--cEEEEECCCCCEEEeeC
Confidence 367899999987 55555555 89999999888765443 67899999999999973
No 70
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=5.3e-14 Score=106.10 Aligned_cols=53 Identities=26% Similarity=0.204 Sum_probs=42.8
Q ss_pred ceeeEEEEeCC---HHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 151 AYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 151 g~~Hiaf~v~D---v~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
+..|+||.|++ ++++++++ +++|+++..+|...++ .+.+||+|||||.|||+.
T Consensus 68 ~~~~l~f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 68 TEVLISLSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CeEEEEEeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 45699999985 55666666 8999999988876543 367899999999999985
No 71
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.57 E-value=8.1e-14 Score=104.60 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=42.1
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeee-------cCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKIT-------RQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~-------~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.|++|.|+|+++++++| +++|+++. .++...+. +.+.++|+|||||.|||.+.
T Consensus 60 ~~~~~~v~dvd~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 60 FGCCLRLPDVAALHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred ceEEEEeCCHHHHHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 47999999999999999 78999853 23332233 35889999999999999885
No 72
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.57 E-value=1.1e-13 Score=101.48 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=44.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCe-eecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGK-ITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~-i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
+..|++|.++|++++++++ +++|++ +..++...+. +.+.++++||+|+.|||+|
T Consensus 58 ~~~~~~~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 58 RGGSVYIEVEDVDALYAEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred CcEEEEEEeCCHHHHHHHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 4568999999999999999 789998 6666655444 3478999999999999985
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.57 E-value=6.5e-14 Score=120.83 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=77.1
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+.+++|+.|.|+|+++|++||+++|||++..+.. ...|+.......+..+.+.
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~--------------------- 54 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLT--------------------- 54 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEee---------------------
Confidence 5789999999999999999999999999876521 1233321100011111110
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC---CHHHHHHHHHHHHHHcC
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEVVNLVTQELG 177 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~---Dv~a~~~~l~~~~~~~G 177 (220)
. ....++.|+||.|+ |+++++++| +++|
T Consensus 55 --------------------------------------~-------~~~~~~~hiaf~v~~~~dl~~~~~~l----~~~G 85 (294)
T TIGR02295 55 --------------------------------------K-------APSAALSYIGFRVSKEEDLDKAADFF----QKLG 85 (294)
T ss_pred --------------------------------------e-------CCCcCccEEEEEeCCHHHHHHHHHHH----HhcC
Confidence 0 11236789999998 455566666 8999
Q ss_pred CeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 178 GKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 178 ~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+++...+.+ + ..+.+||+|||||.|||+....
T Consensus 86 v~v~~~~~~--~-~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 86 HPVRLVRDG--G-QPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred CcEEeecCC--C-CceEEEEECCCCCEEEEEEchh
Confidence 998776543 2 2388999999999999998544
No 74
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.56 E-value=1.4e-13 Score=98.98 Aligned_cols=112 Identities=26% Similarity=0.364 Sum_probs=77.6
Q ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCcccc
Q 027676 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDALG 105 (220)
Q Consensus 26 Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~g 105 (220)
|+.|.|+|++++++||+++||++...+... .....+++..+ +..+++....+..
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~-------------------- 54 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPA-------------------- 54 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCC--------------------
Confidence 899999999999999999999998876432 11233333321 2334443211100
Q ss_pred ceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCc
Q 027676 106 MKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 185 (220)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~ 185 (220)
....+.+..|+||.|+|+++++++| +++|+.+..++.
T Consensus 55 ---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~l----~~~g~~~~~~~~ 91 (112)
T cd06587 55 ---------------------------------------PAPSGGGGVHLAFEVDDVDAAYERL----KAAGVEVLGEPR 91 (112)
T ss_pred ---------------------------------------CcccCCCeeEEEEECCCHHHHHHHH----HHcCCcccCCCc
Confidence 0012347889999999998888888 789999887775
Q ss_pred ccCCCCceEEEEECCCCCEEEE
Q 027676 186 SIPGLNTKITSFVDPDGWKTVL 207 (220)
Q Consensus 186 ~~~~~~~~~~~~~DPdG~~iEl 207 (220)
. +....+.+++.||+|+.|||
T Consensus 92 ~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 92 E-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred C-CCCCcEEEEEECCCCcEEeC
Confidence 2 12335889999999999986
No 75
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.50 E-value=2.7e-13 Score=100.67 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=70.0
Q ss_pred eeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCccc
Q 027676 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDAL 104 (220)
Q Consensus 25 ~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~ 104 (220)
+||+|.|+|++++++||+++||++.......+.......++..+. ....+||..+.+..
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~------------------- 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGD------------------- 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTT-------------------
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCC-------------------
Confidence 699999999999999999999999877666555556666655432 11445554332111
Q ss_pred cceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcc-cccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 105 GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~-~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
.+ ...+.|++||||.|+|+++++++| +++|+++...
T Consensus 60 ---------------------------------------~~~~~~~~gi~Hia~~v~D~d~~~~~l----~~~G~~~~~~ 96 (109)
T PF13669_consen 60 ---------------------------------------SPLDRGGGGIHHIAFEVDDLDAAIARL----EAQGFRVLDE 96 (109)
T ss_dssp ---------------------------------------CHHHHTSSEEEEEEEEESHHHHHHHHH----HHTTECEEEC
T ss_pred ---------------------------------------cccccCCCCEEEEEEEeCCHHHHHHHH----HHCCCEEccc
Confidence 01 125679999999999999999999 7999998866
Q ss_pred C
Q 027676 184 P 184 (220)
Q Consensus 184 p 184 (220)
+
T Consensus 97 ~ 97 (109)
T PF13669_consen 97 G 97 (109)
T ss_dssp E
T ss_pred C
Confidence 4
No 76
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.50 E-value=4.1e-13 Score=115.76 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=76.1
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~ 100 (220)
+.+++|+.|.|+|+++|++||+++|||+...+. +. ...|+..+. .++.+.+..
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~--~~---~~~~~~~~~--~~~~~~l~~-------------------- 53 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEG--EN---DALYLRLDS--RAHRIAVHP-------------------- 53 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCC--CC---ceEEEEcCC--CceEEEEEE--------------------
Confidence 368999999999999999999999999876532 11 122433321 122121210
Q ss_pred CccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCC---HHHHHHHHHHHHHHcC
Q 027676 101 EDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD---VYKSAEVVNLVTQELG 177 (220)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~D---v~a~~~~l~~~~~~~G 177 (220)
....++.|++|.|+| ++++.++| +++|
T Consensus 54 ----------------------------------------------~~~~~~~~~~f~V~~~~~l~~~~~~L----~~~G 83 (286)
T TIGR03213 54 ----------------------------------------------GESDDLAYAGWEVADEAGLDQVKEKL----EKAG 83 (286)
T ss_pred ----------------------------------------------CCcCCeeeEeeeeCCHHHHHHHHHHH----HHcC
Confidence 001256789999999 55555555 8999
Q ss_pred CeeecCCcccC--CCCceEEEEECCCCCEEEEEech
Q 027676 178 GKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 178 ~~i~~~p~~~~--~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+++...+.... .+..+.++|+|||||.|||+...
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 84 VAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred CceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 99877653211 12247899999999999999753
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.50 E-value=7.4e-13 Score=114.43 Aligned_cols=118 Identities=45% Similarity=0.736 Sum_probs=93.9
Q ss_pred CceeEEEEEeCc----------cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC
Q 027676 91 TGFGHFAIATED----------ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 160 (220)
Q Consensus 91 ~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~ 160 (220)
.++.|+++.|+| ++|+++....+.+...+..+++.++++..+..+++..+.+......+.|+.|+||.|+
T Consensus 23 ~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~v~ 102 (286)
T PLN02300 23 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIAVE 102 (286)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEEeC
Confidence 568899999998 5899988766555556667778776555567788876554444445678999999999
Q ss_pred CHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 161 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 161 Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
|++++++++ +++|+++..+|...+++..+++||+|||||.|||+++..
T Consensus 103 dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 103 DVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred CHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999 799999998887776655578899999999999999753
No 78
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.47 E-value=1.3e-12 Score=97.46 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=40.6
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeec-----CCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITR-----QPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~-----~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
.|++|.|+|+++++++| +++|+++.. ++...+. +.+.++|+|||||+|+|.+
T Consensus 57 ~~~~~~v~did~~~~~l----~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 57 SMLHLEVDDLEAYYEHI----KALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred CEEEEEECCHHHHHHHH----HHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 46899999999999999 789987543 2332233 3488999999999999864
No 79
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.46 E-value=2.1e-12 Score=95.99 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=39.9
Q ss_pred eEEEEe---CCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEe
Q 027676 154 QVAIST---DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 209 (220)
Q Consensus 154 Hiaf~v---~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~ 209 (220)
|++|.+ +|++++++++ ++.|+++..++...+. +.+.++++||+||.|||..
T Consensus 67 ~~~~~~~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 67 TLAHNVRSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred EEEEEcCCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 455554 6777777777 7899999888766554 3588999999999999975
No 80
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=7e-13 Score=109.46 Aligned_cols=108 Identities=42% Similarity=0.699 Sum_probs=93.4
Q ss_pred CceeEEEEEeCc----------cccceEEEeecCCC-----------CceEEEEeeccCCCCceEEEEEEecCCcccccC
Q 027676 91 TGFGHFAIATED----------ALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKG 149 (220)
Q Consensus 91 ~~~~~~~~~~~~----------~~g~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~ 149 (220)
++..|+.|+|.| ++||++++..+.++ .||+.+|++||++++|.++|||+|++...+.-|
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 567788999988 58999999999888 899999999999999999999999999999999
Q ss_pred CceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 150 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 150 ~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+++.||++.++|+-..++++ ...|.+ +++...+++.||||+.+++++..
T Consensus 96 ndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred CCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccC
Confidence 99999999999988888877 333331 23346799999999999999843
No 81
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.40 E-value=7.3e-12 Score=95.39 Aligned_cols=119 Identities=25% Similarity=0.319 Sum_probs=82.2
Q ss_pred CcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecC-CCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP-EQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 20 ~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
-...+.|..|.|.|++++++||+++|||++....+. +.+..+....+. ...+. |.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~~~~y~~f~~~~~~~gG~---l~------------------- 61 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--GEMRYAVFPADGAGAGGG---LM------------------- 61 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccC--CCceEEEEECCCccccce---ec-------------------
Confidence 346789999999999999999999999999765332 222322221110 00000 00
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCC
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGG 178 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~ 178 (220)
. .. ....+..-.+|-|.|+|+++.++++ +++|.
T Consensus 62 ----------~-~~--------------------------------~~~p~~~~~~iy~~v~did~~l~rv----~~~GG 94 (127)
T COG3324 62 ----------A-RP--------------------------------GSPPGGGGWVIYFAVDDIDATLERV----VAAGG 94 (127)
T ss_pred ----------c-CC--------------------------------cCCCCCCCEEEEEecCChHHHHHHH----HhcCC
Confidence 0 00 0001122334668899999999999 79999
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+|..++.++|++ ++.+.|.||+||.|-|.+.
T Consensus 95 ~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 95 KVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred eEEecccccCCc-eEEEEEECCCCCEEEEeec
Confidence 999999999864 4889999999999999875
No 82
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.26 E-value=2e-10 Score=96.87 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=83.4
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
...+.++-+.|.|+|++++..||+++||+++..+.. +...++.+ +...|.|.......
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vg---g~~LL~L~q~~~a~------------- 63 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVG---GTPLLTLEQFPDAR------------- 63 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeC---CEEEEEEEeCCCCC-------------
Confidence 345789999999999999999999999999988642 23344432 12333332211110
Q ss_pred EeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCC
Q 027676 99 ATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGG 178 (220)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~ 178 (220)
.+..+..|+-|+||.+++-.++.+.| .++.+.|+
T Consensus 64 ---------------------------------------------~~~~~~aGLyH~AfLlP~r~~L~~~l-~hl~~~~~ 97 (265)
T COG2514 64 ---------------------------------------------RPPPRAAGLYHTAFLLPTREDLARVL-NHLAEEGI 97 (265)
T ss_pred ---------------------------------------------CCCccccceeeeeeecCCHHHHHHHH-HHHHhcCC
Confidence 11234458999999999965555544 45578888
Q ss_pred eeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 179 KITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 179 ~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
++. +..+ +...-.+||.||+||-||++..+.
T Consensus 98 ~l~-Ga~D--H~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 98 PLV-GASD--HLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred ccc-ccCc--chhheeeeecCCCCCeEEEEecCC
Confidence 875 2222 333467999999999999998743
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.25 E-value=4e-11 Score=98.01 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=69.1
Q ss_pred ceeeeEEEEEC--CHHHHHHHHHHhcCCEEEEeecCCC--CceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEE
Q 027676 22 RRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (220)
Q Consensus 22 ~~l~Hi~l~V~--Dle~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~ 97 (220)
.+++|+++.|+ |++++++||+++|||+...+...++ .......+.. ......++|..+..... .+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~--~~g~i~l~L~~~~~~~~--~s------- 70 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLAS--PDGKIRIPLNEPASGKR--KS------- 70 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEEC--CCCcEEEEEecCCCCCC--cc-------
Confidence 57999999999 9999999999999999887654322 1222223322 11223333321110000 00
Q ss_pred EEeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcC
Q 027676 98 IATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELG 177 (220)
Q Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G 177 (220)
.. ..-...+.+.|++||||.|+|+++++++| +++|
T Consensus 71 ----------------------------------~~-------~~fl~~~~G~Gv~HIAf~vdDI~~~~~~L----~~~G 105 (191)
T cd07250 71 ----------------------------------QI-------QEFLEYYGGAGVQHIALATDDIFATVAAL----RARG 105 (191)
T ss_pred ----------------------------------HH-------HHHHHHhCCCceeEEEEECCCHHHHHHHH----HHcC
Confidence 00 00001334679999999999999999999 7999
Q ss_pred CeeecCCc
Q 027676 178 GKITRQPG 185 (220)
Q Consensus 178 ~~i~~~p~ 185 (220)
+++...|.
T Consensus 106 v~~l~~P~ 113 (191)
T cd07250 106 VEFLPIPD 113 (191)
T ss_pred CeeccCch
Confidence 99988774
No 84
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.23 E-value=7.9e-11 Score=88.31 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=42.3
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
.-|||.+.+ .+.++.+.++..++|++...++.. .+..+...|+|||||.||++.-
T Consensus 73 vli~ls~~s-~eevd~~v~ka~eaGGk~~~~~~d--~gfMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 73 VLISLSAGS-REEVDELVDKALEAGGKPANEPQD--EGFMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred EEEEeccCc-HHHHHHHHHHHHHcCCCCCCCccc--cccccceeeeCCCCCeEEEEEe
Confidence 348888887 566666666669999998776664 3445778899999999999864
No 85
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.10 E-value=7.9e-10 Score=81.54 Aligned_cols=33 Identities=30% Similarity=0.612 Sum_probs=30.2
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeec
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRD 54 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~ 54 (220)
++++|++|.|+|+++|++||+++||++...+..
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 478999999999999999999999999988754
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.03 E-value=1.1e-09 Score=97.55 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=69.0
Q ss_pred cccCcceeeeEEEEEC--CHHHHHHHHHHhcCCEEEEeecCCCC--ceeEEEeeecCCCceeEEEEEeecCCcccCCCCc
Q 027676 17 PKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG 92 (220)
Q Consensus 17 ~~~~~~~l~Hi~l~V~--Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~ 92 (220)
+.+...+++|+++.|+ |++++++||+++|||+...+.+.+.. .+....+.. ..+...++|..+....
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~--~~g~~~i~L~ep~~~~------- 222 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS--PDGKVKIPLNEPASGK------- 222 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC--CCCcEEEEEeccCCCC-------
Confidence 3455688999999999 99999999999999998876442211 111011110 0112223332100000
Q ss_pred eeEEEEEeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCC-c---ccccCCceeeEEEEeCCHHHHHHH
Q 027676 93 FGHFAIATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-T---EYTKGNAYAQVAISTDDVYKSAEV 168 (220)
Q Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~-~---~~~~~~g~~Hiaf~v~Dv~a~~~~ 168 (220)
...+ . +.+.+.|++||||.|+|+++++++
T Consensus 223 -----------------------------------------------~~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~ 255 (353)
T TIGR01263 223 -----------------------------------------------DKSQIEEFLEFYNGAGVQHIALNTDDIVRTVRA 255 (353)
T ss_pred -----------------------------------------------CCCHHHHHHHHcCCCCccEEEEEcCCHHHHHHH
Confidence 0000 0 133467999999999999999999
Q ss_pred HHHHHHHcCCeeecCC
Q 027676 169 VNLVTQELGGKITRQP 184 (220)
Q Consensus 169 l~~~~~~~G~~i~~~p 184 (220)
| +++|+++..+|
T Consensus 256 l----~~~Gv~~l~~P 267 (353)
T TIGR01263 256 L----RARGVEFLDTP 267 (353)
T ss_pred H----HHcCCccCcCC
Confidence 9 79999999877
No 87
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.97 E-value=5e-08 Score=74.23 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=37.4
Q ss_pred ceeeEEEEeCCH---HHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEE
Q 027676 151 AYAQVAISTDDV---YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 207 (220)
Q Consensus 151 g~~Hiaf~v~Dv---~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 207 (220)
+..++++.|+|+ ++++++| ++ |.++..++...+.+ .+.++++||+|+.|+|
T Consensus 74 ~~~~l~i~~~~~e~v~~~~~~l----~~-~g~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 74 NGISLSVECDSEEEADRLFEAL----SE-GGTVLMPLQKTFWS-PLFGWVTDRFGVSWQI 127 (128)
T ss_pred CCEEEEEECCCHHHHHHHHHHH----hc-CCeEeccchhcCcc-cccEEEECCCCCEEEe
Confidence 345799999984 4444554 44 55888888766543 4789999999999997
No 88
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.94 E-value=2e-08 Score=89.44 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=80.7
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeC
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~ 101 (220)
++++|+.|.|+|++++++||++.|||+...+.....+. ..+.+.. +...++|....+..+.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~----G~~~l~L~~~~~~~s~-------------- 61 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ----GQINFVLTAPYSSDSP-------------- 61 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe----CCEEEEEecCCCCCch--------------
Confidence 36899999999999999999999999998763222211 1122221 1233444321110000
Q ss_pred ccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 102 DALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
..+ -....+.|+.||||.|+|++++++++ +++|+++.
T Consensus 62 --------------~~~-------------------------~~~~hg~gv~~iaf~V~Dv~~a~~~l----~~~Ga~~v 98 (353)
T TIGR01263 62 --------------AAD-------------------------FAAKHGDGVKDVAFRVDDAAAAFEAA----VERGAEPV 98 (353)
T ss_pred --------------HHH-------------------------HHHhCCCceEEEEEEECCHHHHHHHH----HHCCCEec
Confidence 000 00124678999999999999999999 79999998
Q ss_pred cCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 182 RQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 182 ~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
.+|.....+...+.-++.+.|-.+-|+++.
T Consensus 99 ~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~ 128 (353)
T TIGR01263 99 QAPVELDEGAVTLATIKGIGDVVHTLVDRG 128 (353)
T ss_pred cCCccCCCCeEEEEEEECcCCCEEEEEcCC
Confidence 887643111224445567777777777754
No 89
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=75.04 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=42.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCCcc-cCCCC--ceEEEEECCCCCEEEEEechhh
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQPGS-IPGLN--TKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~-~~~~~--~~~~~~~DPdG~~iElv~~~~~ 213 (220)
+.|.++|.-++.++| +++|++..-+|.- +.+.. .+.+|+.||.||-||+-..+++
T Consensus 75 vVl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~ 132 (138)
T COG3565 75 VVLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQ 132 (138)
T ss_pred EEEEHHHHHHHHHHH----HHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccch
Confidence 557888988999988 7899998888753 33322 2779999999999999877665
No 90
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=7.4e-08 Score=84.57 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=39.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+|+++++ .+.++.+.+++.++|++...++.. .+ . .--|.|||||.||++..
T Consensus 304 l~Ls~~S-re~VD~lv~~A~aaGG~~~~~~~D--~G-f-~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 304 LSLELEC-EHDFVRFLRRWEMLGGELGEQADG--HF-P-LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred EEeccCC-HHHHHHHHHHHHHcCCCCCCCccc--cc-C-cceeECCCCCEEEEEEE
Confidence 8899998 677888888889999976555544 22 2 56789999999999864
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.74 E-value=3.9e-08 Score=88.56 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=31.8
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeec
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRD 54 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~ 54 (220)
..+.+++|+++.|++++.++.||+++|||+.....+
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d 211 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFT 211 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeec
Confidence 346799999999999999999999999999876544
No 92
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=9.6e-07 Score=68.29 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=79.4
Q ss_pred EEEEEC-CHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCcccc
Q 027676 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDALG 105 (220)
Q Consensus 27 i~l~V~-Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~g 105 (220)
.-|.++ |-+++++||+++||.++..+...++. .... ....+....|..+.+.+
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~------------~~~~-----------~~~~~~~i~HA~l~i~g--- 57 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDM------------PSSA-----------GEPPGGRIMHAELRIGG--- 57 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCcc------------Cccc-----------cccccCceEEEEEEECC---
Confidence 357788 99999999999999999877654331 0000 11233456677777653
Q ss_pred ceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCccccc-CCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 106 MKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK-GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~-~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
..+.-....+. .+.+. ++-..-|-+.++|+++.++++ .+.|+++..++
T Consensus 58 ~~im~sd~~~~---------------------------~~~~~~~~~s~~l~~~~~d~da~f~~a----~~aGa~v~mpl 106 (136)
T COG2764 58 STIMLSDAFPD---------------------------MGATEGGGTSLSLDLYVEDVDAVFERA----AAAGATVVMPL 106 (136)
T ss_pred EEEEEecCCCc---------------------------cCcccCCCeeEEEEEEehHHHHHHHHH----HhcCCeEEecc
Confidence 11111111110 00111 111222556777777777777 78999999998
Q ss_pred cccCCCCceEEEEECCCCCEEEEEec
Q 027676 185 GSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 185 ~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
..... +.+...++||.|+.|-|-..
T Consensus 107 ~~~fw-G~r~G~v~D~fGv~W~l~~~ 131 (136)
T COG2764 107 EDTFW-GDRYGQVTDPFGVVWMLNTP 131 (136)
T ss_pred hhcCc-ccceEEEECCCCCEEEEecC
Confidence 87655 45889999999999998765
No 93
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.35 E-value=3.1e-05 Score=58.05 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=63.6
Q ss_pred eeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccCCCCceeEEEEEeCccc
Q 027676 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDAL 104 (220)
Q Consensus 25 ~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~~~~~~~~~~~~~~ 104 (220)
-+..|+|.|-+..++||++.|||++..+.. ..++++.. ...-.+.|-.+++..+....
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~-------------- 59 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVE-------------- 59 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--S--------------
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCC--CCceEEEEecCCcccccccc--------------
Confidence 467899999999999999999999998752 46666643 23333444333333221100
Q ss_pred cceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 105 GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
..-=+.+|.+.|++..+..+-| +.|.++.
T Consensus 60 -------------------------------------------G~KKl~~ivIkv~~~~EIe~LL-----ar~~~~~--- 88 (125)
T PF14506_consen 60 -------------------------------------------GPKKLNRIVIKVPNPKEIEALL-----ARGAQYD--- 88 (125)
T ss_dssp -------------------------------------------SS-SEEEEEEEESSHHHHHHHH-----HC-S--S---
T ss_pred -------------------------------------------CcceeeEEEEEcCCHHHHHHHH-----hcccccc---
Confidence 0013557889999965544444 6776642
Q ss_pred cccCCCCceEEEEECCCCCEEEEEechhh
Q 027676 185 GSIPGLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 185 ~~~~~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
.-..+.+++.+-..+|+|..+.+....+.
T Consensus 89 ~l~kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 89 RLYKGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp EEEE-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred eeEEcCCceEEEEECCCCCEEEEEEcCCH
Confidence 22224455778889999999999987655
No 94
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.21 E-value=3.7e-06 Score=72.59 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=48.9
Q ss_pred ccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccC--CCCceEEEEECCCCCEEEEEechhh
Q 027676 147 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 147 ~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~--~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
..|.|..-+||.|+|++++.+.+ .++|+++..+|.... .+..+++-++-+.-....++++..+
T Consensus 87 ~HgdgvkdvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y 151 (381)
T KOG0638|consen 87 KHGDGVKDVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGY 151 (381)
T ss_pred hcccchhceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccc
Confidence 34567888999999999999999 799999999987643 2345778888777666677766544
No 95
>PRK10148 hypothetical protein; Provisional
Probab=98.12 E-value=0.00027 Score=55.38 Aligned_cols=56 Identities=14% Similarity=-0.081 Sum_probs=42.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
-.++++.++|++++ +++.++ .+.|+++..++...+.+ .+...++||.|+.|.|...
T Consensus 86 ~~~l~l~~~d~ee~-~~~~~a-La~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 86 GFTLVLDTQDVEEG-KRWFDN-LAANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred eEEEEEECCCHHHH-HHHHHH-hhCCCEEEecchhcchh-hccEEEECCCCCEEEEEec
Confidence 45788898897663 333333 36999999998876554 4789999999999999775
No 96
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.10 E-value=7.2e-06 Score=71.84 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=30.9
Q ss_pred cCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCc
Q 027676 148 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 185 (220)
Q Consensus 148 ~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~ 185 (220)
.|.|++||||.++||-++++++ ++.|++++..|.
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred CCCcceEEEecccHHHHHHHHH----HHcCCccCCCch
Confidence 4669999999999999999999 799999998775
No 97
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.02 E-value=4.7e-05 Score=64.62 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=37.3
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecC
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP 69 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~ 69 (220)
+....++||.|.|.|++++.+||+++|||+.+.+. + ...|+..|.
T Consensus 164 p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~--~----~A~F~a~G~ 208 (265)
T COG2514 164 PAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG--P----SALFLASGD 208 (265)
T ss_pred CCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC--C----cceEEecCC
Confidence 45689999999999999999999999999998872 2 356676654
No 98
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.97 E-value=7.3e-05 Score=59.90 Aligned_cols=130 Identities=20% Similarity=0.248 Sum_probs=59.4
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccC-CCCceeEEEEEeCc
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYD-IGTGFGHFAIATED 102 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~-~g~~~~~~~~~~~~ 102 (220)
++|+.+.|+|++++.++|++.|||++.....-+..+.....+.++ +. -|||....+..... .++
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~---~~-YlEli~i~~~~~~~~~~~----------- 65 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG---DG-YLELIAIDPEAPAPDRGR----------- 65 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S---SS-EEEEEEES-HHHSTGGGT-----------
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC---Cc-eEEEEEeCCccccccccc-----------
Confidence 689999999999999999889999998776555433333333332 12 45554321100000 000
Q ss_pred cccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 103 ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
+ + .......+.|+.++||+++|+++..+++ ++.|+....
T Consensus 66 ----------------~----~-----------------~~~~~~~~~g~~~~~l~t~d~~~~~~~l----~~~G~~~~~ 104 (175)
T PF13468_consen 66 ----------------W----F-----------------GLDRLAGGEGLYGWALRTDDIEAVAARL----RAAGLDAGS 104 (175)
T ss_dssp ---------------------T-----------------TTHHHHT--EEEEEEEE-S-HHHHHHHH----HTTT-EEEE
T ss_pred ----------------c----e-----------------echhhcCCCCeEEEEEecCCHHHHHHHH----HhcCCCCCC
Confidence 0 0 0000124568999999999999999999 688876221
Q ss_pred CCcccCCCC--ceEEEEECC----CCCEEEEEec
Q 027676 183 QPGSIPGLN--TKITSFVDP----DGWKTVLVDN 210 (220)
Q Consensus 183 ~p~~~~~~~--~~~~~~~DP----dG~~iElv~~ 210 (220)
.. ..++.. -+.+++.|+ .+..-++++.
T Consensus 105 r~-~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~ 137 (175)
T PF13468_consen 105 RV-RPDGGDLRWRLAFPEDGALPFGGLLPFFIQW 137 (175)
T ss_dssp EE-EEEE-EEEEEEEEEE-SS---SS---EEEEE
T ss_pred cC-cCCCCcceEEEEEeCCcccccCCCCcEEEEe
Confidence 11 111211 145666664 2456666643
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=97.77 E-value=0.0012 Score=59.90 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=48.9
Q ss_pred cCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCC----CCceEEEEECCCCCEEEEEechh
Q 027676 148 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG----LNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 148 ~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~----~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
.|.|..=|||+|+|+++++++. .++|++...+|..... +...+.-+..++|..+-||++..
T Consensus 89 HG~gV~dvaf~V~Da~~a~~~A----~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~ 153 (398)
T PLN02875 89 HGLAVRAVGVLVEDAEEAFRTS----VAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKG 153 (398)
T ss_pred cCCeeeEEEEEECCHHHHHHHH----HHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCC
Confidence 4678899999999999999999 7999999888765422 12356667899999999998754
No 100
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00058 Score=59.27 Aligned_cols=147 Identities=16% Similarity=0.303 Sum_probs=88.6
Q ss_pred cccceee-ccccCcceeeeEEEEEC--CHHHHHHHHHHhcCCEEEEeecCCCCcee-----EEEeeecCCCceeEEEEEe
Q 027676 9 ANAELLE-WPKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEKYS-----NAFLGFGPEQSHFVVELTY 80 (220)
Q Consensus 9 ~~~~~~~-~~~~~~~~l~Hi~l~V~--Dle~s~~FY~~vLG~~~~~~~~~~~~~~~-----~~~l~~g~~~~~~~lel~~ 80 (220)
.++.++. +++....+++|+...++ .++.++.||.++|||......+++.-+.+ ...+. + .. .++.+.-
T Consensus 163 ~~~~~fp~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n-~~-esi~mpi 238 (381)
T KOG0638|consen 163 SSDALFPKLPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--N-YE-ESIKMPI 238 (381)
T ss_pred ccccccCCCCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--c-CC-ccEEEec
Confidence 3445555 88889999999999999 78899999999999987665432221000 00000 0 00 0111111
Q ss_pred ecCCcccCCCCceeEEEEEeCccccceEEEeecCCCCceEEEEeeccCCCCceEEEEEEecCCcccccCCceeeEEEEeC
Q 027676 81 NYGVTSYDIGTGFGHFAIATEDALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 160 (220)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~~~g~~Hiaf~v~ 160 (220)
+.+.+..+ ...+++-. -.++.|.|++|||+.++
T Consensus 239 nEp~~G~k------------------------------------------~ksQIqey-----v~y~gG~GvQHiaL~te 271 (381)
T KOG0638|consen 239 NEPAPGKK------------------------------------------KKSQIQEY-----VEYHGGAGVQHIALNTE 271 (381)
T ss_pred cCCCCCCc------------------------------------------cHHHHHHH-----HHhcCCCceeeeeecch
Confidence 11110000 00000000 02667889999999999
Q ss_pred CHHHHHHHHHHHHHHcCCeeecCCccc--------C-------CCC-----ceEEEEECCCCCEEEEEec
Q 027676 161 DVYKSAEVVNLVTQELGGKITRQPGSI--------P-------GLN-----TKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 161 Dv~a~~~~l~~~~~~~G~~i~~~p~~~--------~-------~~~-----~~~~~~~DPdG~~iElv~~ 210 (220)
||=.+++.+ ++.|+++.++|... . ... ..+..=.|-.|+.++++..
T Consensus 272 dIi~Ai~~l----r~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTK 337 (381)
T KOG0638|consen 272 DIIEAIRGL----RARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTK 337 (381)
T ss_pred HHHHHHHHH----HhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeecc
Confidence 999999999 78999999888531 0 000 1333447889999999863
No 101
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=96.88 E-value=0.012 Score=45.74 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=42.1
Q ss_pred cCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhh
Q 027676 148 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 148 ~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
.|.+..-|+|+|+|.++++++. .+.|.+...+|... + -..+.-++.+.|-++-||++.+-
T Consensus 70 HG~sv~aiafrV~Da~~A~~rA----~~~GA~~~~~~~~~-~-e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 70 HGPSVCAIAFRVDDAAAAYERA----VALGAEPVQEPTGP-G-ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp HSSEEEEEEEEES-HHHHHHHH----HHTT--EEEEEEET-T--BEEEEEE-CCC-EEEEEE--SS
T ss_pred cCCEEEEEEEEeCCHHHHHHHH----HHcCCcCcccCCCC-C-cEeeeeEEccCCCEEEEEecCCC
Confidence 4678888999999999999999 79999887766431 2 23678889999999999998543
No 102
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.66 E-value=0.17 Score=37.84 Aligned_cols=44 Identities=18% Similarity=0.021 Sum_probs=29.8
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEE
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 208 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 208 (220)
..|++.++|. +.++++..+|.+.|- +.+ ....+.|-.|..|.|+
T Consensus 73 ~sl~i~~~~~-ee~~~~f~~Ls~gG~---------~~~--~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 73 ISLCIECDDE-EEIDRIFDKLSEGGQ---------WFS--RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEEEEESSH-HHHHHHHHHHHTTTE---------TCC--EEEEEE-TTS-EEEEE
T ss_pred EEEEEEcCCH-HHHHHHHHHHHcCCC---------ccc--eeEEEEeCCCCEEEeC
Confidence 5689999994 555666566555554 222 7789999999999986
No 103
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.56 E-value=0.0042 Score=45.55 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=41.0
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCC-CEEEEEechh
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDG-WKTVLVDNED 212 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG-~~iElv~~~~ 212 (220)
+||+|.|+|++++++.+. ...|+...... ..+....+..++..++| ..|||+++.+
T Consensus 1 dHv~i~V~Dl~~a~~~~~---~~lG~~~~~~~-~~~~~~v~~~~~~~~~~~~~iELi~p~~ 57 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYC---DVLGFEPWERY-RDEPQGVRVAFLYLGDGPVQIELIQPLD 57 (109)
T ss_dssp EEEEEEES-HHHHHHHHH---HCTTHEEEEEE-EEGCTTEEEEEEEETTETEEEEEEEESS
T ss_pred CEEEEEcCCHHHHHHHHH---HhhCCcEEEEE-ecCCCCEEEEEEEeCCCcEEEEEEEeCC
Confidence 599999999999999995 34898754332 22233446788888888 6899999754
No 104
>PF15067 FAM124: FAM124 family
Probab=96.36 E-value=0.064 Score=44.88 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=27.7
Q ss_pred ceeeeEEEEEC--CHHHHHHHHHHhcCCEEEEee
Q 027676 22 RRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKR 53 (220)
Q Consensus 22 ~~l~Hi~l~V~--Dle~s~~FY~~vLG~~~~~~~ 53 (220)
..+..+.|+|+ |.+.+++||+-+|+-+...+.
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k 160 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQK 160 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceee
Confidence 46778899998 999999999999999886653
No 105
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=95.08 E-value=0.11 Score=39.61 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred ceeEEEEEeCc----------cccceEEEeecCCC
Q 027676 92 GFGHFAIATED----------ALGMKLLRTVDKPE 116 (220)
Q Consensus 92 ~~~~~~~~~~~----------~~g~~~~~~~~~~~ 116 (220)
.+.|++++|.| ++||++.+..+.++
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~ 36 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEE 36 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCcc
Confidence 46799999998 68999887766654
No 106
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.88 E-value=0.17 Score=38.27 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=39.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcc----------cCCCCceEEEEECCCC-CEEEEEech
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS----------IPGLNTKITSFVDPDG-WKTVLVDNE 211 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~----------~~~~~~~~~~~~DPdG-~~iElv~~~ 211 (220)
+++||++.|.|++++.+... +.|.++...... .++...+.+++..|+| ..||+++..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~----~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFL----ELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHH----HcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 57899999999999999994 589887544311 0111235567777665 589999853
No 107
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.71 E-value=0.16 Score=39.91 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=41.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcc-------c----------CCCCceEEEEECCCCCEEEEEechh
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS-------I----------PGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~-------~----------~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
++.|+++.|.|++++.+... +..|.++..++.. . +....+.+++..++|..||+++..+
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~---~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYT---EVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHH---HhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 68899999999999999995 4589877532110 0 0111356777777888899998753
No 108
>PLN02367 lactoylglutathione lyase
Probab=94.48 E-value=0.23 Score=41.87 Aligned_cols=43 Identities=33% Similarity=0.558 Sum_probs=36.8
Q ss_pred ccCCCCceeEEEEEeCc----------cccceEEEeecCCCCceEEEEeeccC
Q 027676 86 SYDIGTGFGHFAIATED----------ALGMKLLRTVDKPEYKYTLAMLGYAE 128 (220)
Q Consensus 86 ~~~~g~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~l~~~~ 128 (220)
....|-.++|.+++|.| ++||++....+.++.+|.++||++++
T Consensus 69 ~~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~ 121 (233)
T PLN02367 69 EATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYED 121 (233)
T ss_pred CCCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCC
Confidence 34466788999999999 58999999999999999999998754
No 109
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.23 E-value=0.22 Score=36.14 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=38.9
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECC---CCCEEEEEechh
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDP---DGWKTVLVDNED 212 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DP---dG~~iElv~~~~ 212 (220)
|+.|+++.|+|++++.+... +-.|+++...............++.+. .|..|+|++...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~---~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYT---DVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHH---HccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 47899999999999999985 467988764432111111234555554 677888887643
No 110
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.31 E-value=0.55 Score=33.86 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=38.5
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+++||++.|.|++++.+.+. +..|.++...... +......+.+..+++..||++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~---~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYV---EILGFKVIREVYR-PERGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHH---HhcCCEEeeeeec-CCCCcEEEEEecCCCcEEEEEEcC
Confidence 67899999999999999995 4689987654321 111122234455677788887644
No 111
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=92.87 E-value=0.24 Score=39.20 Aligned_cols=86 Identities=27% Similarity=0.331 Sum_probs=62.2
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEeecCCcccC---------CCCc
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYD---------IGTG 92 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~---------~g~~ 92 (220)
.++.|..|.+++..+...||...||++.......+...-. +|+.. ....+||.++||..+.. .+++
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~----~~~~~ELthn~Gtes~~~~~~~ngN~~prG 115 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFS----RNAKLELTHNWGTESPPDQAYLNGNKEPRG 115 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEec----ccCceeeecCCCCCCCcchhhcCCCCCCCc
Confidence 4899999999999999999999999986554333322222 44432 34579999999976544 2368
Q ss_pred eeEEEEEeCcc---------ccceEEEee
Q 027676 93 FGHFAIATEDA---------LGMKLLRTV 112 (220)
Q Consensus 93 ~~~~~~~~~~~---------~g~~~~~~~ 112 (220)
+.||||.|+|+ .|++..+..
T Consensus 116 fgHIci~V~di~sac~~lkekGV~f~Kk~ 144 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLKEKGVRFKKKL 144 (170)
T ss_pred cceEEEEeCCHHHHHHHHHHhCceeeecC
Confidence 99999999995 477744443
No 112
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=92.36 E-value=0.63 Score=33.84 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=37.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
+.||+|.|.|++++.+.+. +-.|.+........++...+.+++.. +|..+++++..
T Consensus 1 ~~hv~l~v~d~~~~~~fy~---~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYR---DVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPL 56 (128)
T ss_pred CcEEEEEeCCHHHHHHHHH---HhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEEC
Confidence 3699999999999999985 45888775433221122234556654 67888988753
No 113
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=91.72 E-value=0.79 Score=33.03 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=38.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCc-ccCCCCceEEEEECCCCCEEEEEec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG-SIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~-~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+++||++.|.|++++.+... .-.|.++..... ..+.......++...+. .++++..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~---~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 57 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYT---DVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLN 57 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHH---HTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHH---HHhCCcEEeeeccccccccccceeeccccc-ceeeeee
Confidence 47899999999999999997 679998887655 22222224455555554 4666654
No 114
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=91.45 E-value=0.36 Score=38.34 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=30.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
++||.+.|+|++++.+.+. +..|+++... +..++.+.....+.=++| -|||+...+
T Consensus 1 lDH~v~~v~dl~~a~~~~~---~~lGf~~~~g-g~h~~~GT~N~li~f~~~-YlEli~i~~ 56 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFE---QRLGFTVTPG-GEHPGWGTANALIPFGDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEEE-TTGGG----GG---GS--S--EEE-EE-TTT-EEEEEEE-SSS-EEEEEEES-
T ss_pred CCEEEEEcCCHHHHHHhhh---hcceEeecCC-CcCCCCccEEEEEeeCCc-eEEEEEeCC
Confidence 4799999999999999995 4789988744 334443444444433777 999998643
No 115
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=90.96 E-value=1.5 Score=35.57 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred cccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEE--C----------------CCCCEEEE
Q 027676 146 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFV--D----------------PDGWKTVL 207 (220)
Q Consensus 146 ~~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~--D----------------PdG~~iEl 207 (220)
.+.+-.+.|++|.|.|++++++... +..|.++..... .+....+.+|+- + ..+..|||
T Consensus 22 ~~~~~~~~Ht~i~V~Dle~Si~FY~---~vLG~~~~~r~~-~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL 97 (185)
T PLN03042 22 ATKGYIMQQTMFRIKDPKASLDFYS---RVLGMSLLKRLD-FPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIEL 97 (185)
T ss_pred CCCCcEEEEEEEeeCCHHHHHHHHH---hhcCCEEEEEEE-cCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEE
Confidence 4456689999999999999999886 578998865542 223223434432 1 13568999
Q ss_pred Eec
Q 027676 208 VDN 210 (220)
Q Consensus 208 v~~ 210 (220)
++.
T Consensus 98 ~~~ 100 (185)
T PLN03042 98 THN 100 (185)
T ss_pred EEc
Confidence 975
No 116
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=90.15 E-value=8.3 Score=34.45 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.5
Q ss_pred ceeeccccCcceeeeEEEEECCH-HHHHHHHHHhcCCEEEEe
Q 027676 12 ELLEWPKKDKRRFLHAVYRVGDL-DRTIKFYTECFGMKLLRK 52 (220)
Q Consensus 12 ~~~~~~~~~~~~l~Hi~l~V~Dl-e~s~~FY~~vLG~~~~~~ 52 (220)
..+.+|.. -..+.++.++|+|. ++...++ .-|||+...+
T Consensus 12 ~~~~~P~~-~~GfeFvEf~~~d~~~~l~~l~-~~lGF~~~~~ 51 (363)
T COG3185 12 DTLANPEG-TDGFEFVEFAVPDPQEALGALL-GQLGFTAVAK 51 (363)
T ss_pred ccccCCCC-CCceeEEEEecCCHHHHHHHHH-HHhCcccccc
Confidence 33445544 68999999999999 5555555 6799988764
No 117
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.37 E-value=2.1 Score=30.86 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=36.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+.|+++.|+|++++.+... +-.|.++...... +.......|+.-.+|..|++++..+
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~---~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 58 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYV---TYFGATSNEKYHN-PRKGFESYFLSFDDGARLELMTRPD 58 (125)
T ss_pred ceEEEEEecCHHHHHHHHH---HHhCCEeeceEeC-CCCCceEEEEecCCCcEEEEEcCcc
Confidence 4699999999999999885 4578876422111 1111233455444678899987543
No 118
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.30 E-value=1.6 Score=31.98 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=33.5
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
|++|+++.|.|++++.+.+.+.+-..|.++..... . ...|+...++..|++.+..
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~---~---~~~~~~~~~~~~i~l~~~~ 55 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE---D---GRSWRAGDGGTYLVLQQAD 55 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec---c---CceEEecCCceEEEEEecc
Confidence 47899999999999999885322222988765431 1 1123322445566666543
No 119
>PRK11478 putative lyase; Provisional
Probab=89.03 E-value=2.1 Score=31.30 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.0
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|+++.|+|++++++... +..|.++...
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~---~~LG~~~~~~ 35 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYC---DILGFTLQSE 35 (129)
T ss_pred eecEEEEEcCCHHHHHHHHH---HHhCCEeccc
Confidence 57899999999999999885 4689887543
No 120
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=89.03 E-value=1.4 Score=30.76 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=37.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhh
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
++|+++.|+|++++.+... .-.|.+....+.. + ....++..+++..+++....+.
T Consensus 1 i~Hi~l~v~d~~~~~~FY~---~~lG~~~~~~~~~-~---~~~~~~~~~~~~~i~l~~~~~~ 55 (114)
T cd07245 1 LDHVALRVPDLEASRAFYT---DVLGLEEGPRPPF-L---FPGAWLYAGDGPQLHLIEEDPP 55 (114)
T ss_pred CCeEEEecCCHHHHHHHHH---HccCCcccCcCCC-C---CCceEEEeCCCcEEEEEecCCC
Confidence 4699999999999999886 5778876544321 1 1234555555567888876554
No 121
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=88.33 E-value=2.3 Score=33.21 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=35.1
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEEC--CCCCEEEEEec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVD--PDGWKTVLVDN 210 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~D--PdG~~iElv~~ 210 (220)
|++||++.|.|++++.+... +-.|.++..... + ...++.. .++..|++++.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~---~~LG~~~~~~~~---~---~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLT---DVLGFREVGEEG---D---RVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHH---HhcCCEEEeeeC---C---EEEEEecCCCCCCEEEEEeC
Confidence 57899999999999999885 357988754321 1 2233332 35788888775
No 122
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=88.08 E-value=2.1 Score=30.74 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=36.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCC---CCEEEEEec
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD---GWKTVLVDN 210 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPd---G~~iElv~~ 210 (220)
+.|+++.|.|++++.+... .-.|.++...+.. ++.....+++..++ +..|+++..
T Consensus 1 ~~hv~i~v~d~~~a~~fY~---~~lG~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYT---DVLGMKLLRRKDF-PEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHH---hccCCeEEEEEec-CCCceEEEEecCCCCCCccEEEEEec
Confidence 4699999999999999995 4569887654321 12122345555444 578888764
No 123
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=86.80 E-value=2.4 Score=34.34 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=41.5
Q ss_pred ceeeEEEEeC--CHHHHHHHHHHHHHHcCCeeecCCc-ccCCCCceEEEEECCCC-CEEEEEechh
Q 027676 151 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQPG-SIPGLNTKITSFVDPDG-WKTVLVDNED 212 (220)
Q Consensus 151 g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~i~~~p~-~~~~~~~~~~~~~DPdG-~~iElv~~~~ 212 (220)
+++||++.|+ |++++++... ...|.+...... ..+..+.+..++..|+| ..|+|.++.+
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~---~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYR---KVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHH---HhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5789999999 9999999885 468987654322 11223346677788865 5688887654
No 124
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=85.22 E-value=5.1 Score=30.01 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=40.8
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEee
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 81 (220)
..+.|+++.|.|++++.+-.++ .|.+++.+.....+..+.+++.. +++..+++...
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~d---p~G~~ie~~~~ 123 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKG---YGDSLHTLVDR 123 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEec---cCCcEEEEEec
Confidence 4688999999999999888865 79999866544334456777653 45667777653
No 125
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=84.80 E-value=3.6 Score=28.14 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=38.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechhh
Q 027676 154 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 213 (220)
Q Consensus 154 Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~~ 213 (220)
|+++.|.|++++.+.+. ...|.++...... .....+++.++ +..|+|.+..+.
T Consensus 1 Hi~i~~~d~~~~~~fy~---~~lg~~~~~~~~~---~~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYE---EVLGFEVLFRNGN---GGAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHH---hccCCEEEEeecc---CCEEEEEEecC-CceEEEecCCCC
Confidence 78899999999999984 3489887655432 12255666665 788888887654
No 126
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=84.55 E-value=4.8 Score=29.10 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.4
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
+.||++.|+|++++.+... ...|.++...
T Consensus 3 i~hi~l~v~d~~~~~~Fy~---~~lG~~~~~~ 31 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQ---DVLGLEVLER 31 (125)
T ss_pred EEEEEEEECCHHHHHHHHH---hccCcEEEEc
Confidence 6799999999999999985 4579888655
No 127
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=83.37 E-value=5.1 Score=28.26 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=36.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCC--CEEEEEechhh
Q 027676 154 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDG--WKTVLVDNEDF 213 (220)
Q Consensus 154 Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG--~~iElv~~~~~ 213 (220)
|+++.|.|++++.+... +..|.++...... .....++++.++++ ..|++.+..+.
T Consensus 1 Hv~l~v~d~~~~~~fY~---~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ 57 (119)
T cd07263 1 LVSLYVDDQDKALAFYT---EKLGFEVREDVPM--GGGFRWVTVAPPGSPETSLVLAPPANP 57 (119)
T ss_pred CceEEeCCHHHHHHHHH---hccCeEEEEeecc--CCCcEEEEEeCCCCCeeEEEEeCCCCc
Confidence 89999999999988885 4589988754321 11224566666654 46666655443
No 128
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=82.48 E-value=7.3 Score=28.99 Aligned_cols=30 Identities=7% Similarity=0.227 Sum_probs=24.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|+++.|+|++++++... .-.|.+....
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~---~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQ---NIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHH---HHhCCeeEEe
Confidence 68899999999999998886 4578876544
No 129
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=81.10 E-value=6.7 Score=28.34 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=34.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEec
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~ 210 (220)
+.|+++.|.|++++.+... ...|.++..... .+.......++. +++..|+|++.
T Consensus 2 i~hv~l~v~D~~~s~~FY~---~~lG~~~~~~~~-~~~~~~~~~~~~-~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYE---DVLGAHVSHIEE-VPEQGVKVVFIA-LGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHH---HHhCCCCcccee-CCCCCcEEEEEe-cCCEEEEEEec
Confidence 5799999999999999985 467887653321 122222333433 34567888764
No 130
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=80.72 E-value=9.2 Score=28.11 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=24.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
+.|+.+.|.|++++.+... +-.|.++...
T Consensus 2 i~hv~l~v~D~~~s~~FY~---~~lG~~~~~~ 30 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYR---DVLGFTVTDR 30 (134)
T ss_pred eeEEEEEecCHHHHHHHHH---HhcCCEEEee
Confidence 5799999999999999885 4589887643
No 131
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=80.30 E-value=7.1 Score=28.16 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
+.||++.|+|++++.+.. ...|.++.
T Consensus 1 ~~~i~l~V~D~~~a~~FY----~~LGf~~~ 26 (122)
T cd07235 1 LDAVGIVVADMAKSLDFY----RRLGFDFP 26 (122)
T ss_pred CceEEEEeccHHHHHHHH----HHhCceec
Confidence 468999999999999988 45898764
No 132
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=79.93 E-value=9.2 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.9
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.+.|+++.|.|++++.+... .-.|.++..
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~---~vlGl~~~~ 31 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYR---DRLGFRVSD 31 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHH---HhcCCEEEE
Confidence 57899999999999998885 457888753
No 133
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=78.94 E-value=8.6 Score=27.50 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
++.|+++.|.|++++.+.. ...|.++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY----~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFY----EAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHH----HHhCCcEEe
Confidence 5789999999999999988 348987753
No 134
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=78.33 E-value=11 Score=29.02 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCCc-ccC-CCCceEEEEE-CCCCCEEEEEe
Q 027676 149 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG-SIP-GLNTKITSFV-DPDGWKTVLVD 209 (220)
Q Consensus 149 ~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~-~~~-~~~~~~~~~~-DPdG~~iElv~ 209 (220)
..++.||++.|+|++++.+... .-.|.++..... ..+ +.....+|++ ++..+.|.+.+
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~---~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYR---DVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHH---HccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 3489999999999999998885 458887653211 111 1122345543 44556666544
No 135
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=77.99 E-value=18 Score=25.10 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=28.6
Q ss_pred cCcceeeeEEEEECCHHHHHHHHHHhcCCEEEEeec
Q 027676 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRD 54 (220)
Q Consensus 19 ~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~ 54 (220)
.......|+++.|.|+++..+...+ +|.+++....
T Consensus 52 ~~~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~ 86 (108)
T PF12681_consen 52 GPPGGGFHLCFEVEDVDALYERLKE-LGAEIVTEPR 86 (108)
T ss_dssp SSSSSEEEEEEEESHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cCCCceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCE
Confidence 3457889999999999999999975 7999776543
No 136
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=77.44 E-value=11 Score=27.26 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=24.0
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|+++.|.|++++.+... ...|.++...
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~---~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFAT---DVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHH---hccCceeccC
Confidence 57799999999999988885 4579887544
No 137
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=76.93 E-value=9 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
+.||++.|+|++++.+... ...|+++...
T Consensus 2 i~Hv~l~V~Dle~a~~FY~---~~LG~~~~~~ 30 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYT---ETFGLKPSDV 30 (153)
T ss_pred ccEEEEecCCHHHHHHHHH---HhcCCeEEee
Confidence 5799999999999988886 5789887543
No 138
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=76.59 E-value=1.4 Score=32.26 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=10.3
Q ss_pred eeeeEEEEECCHHHHHHHHHHhcC
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECFG 46 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vLG 46 (220)
.+.-+.|+|+| +++.+||+++||
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---
T ss_pred EEEEEEEeCCC-hhHHHHHHhccc
Confidence 45678999999 889999999886
No 139
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=75.95 E-value=12 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
++.|+++.|+|++++.+... ...|.++..
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~---~~lG~~~~~ 32 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYE---KVLGAKLLV 32 (139)
T ss_pred cEEEEEEEecCHHHHHHHHH---hccCCEEEe
Confidence 68899999999999999986 468888753
No 140
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=75.71 E-value=14 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=23.7
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.+.|+++.|.|++++.+... +-.|.+...
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~---~~lG~~~~~ 32 (123)
T cd08351 4 TLNHTIVPARDREASAEFYA---EILGLPWAK 32 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHH---HhcCCEeee
Confidence 46799999999999998885 457887654
No 141
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=74.19 E-value=14 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=24.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|++|.|.|++++.+... +..|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~---~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYR---EVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHH---hccCCEeeee
Confidence 67899999999999999885 4689887543
No 142
>PRK10291 glyoxalase I; Provisional
Probab=73.93 E-value=20 Score=26.30 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEee-cCCCCceeEEEeeecCCCceeEEEEEe
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR-DVPEEKYSNAFLGFGPEQSHFVVELTY 80 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~-~~~~~~~~~~~l~~g~~~~~~~lel~~ 80 (220)
..+.|+++.|.|++++.+--++ .|.++.... ..+.+....+|+.- +++..++|..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~D---PdG~~iel~~ 119 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVED---PDGYKIELIE 119 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEEC---CCCCEEEEEE
Confidence 4688999999999988888855 788776432 22233233455542 3566777764
No 143
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=73.57 E-value=15 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=24.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
.++|+.|.|.|++++.+... +..|.++...
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~---~~lg~~~~~~ 31 (117)
T cd07240 2 RIAYAELEVPDLERALEFYT---DVLGLTVLDR 31 (117)
T ss_pred ceeEEEEecCCHHHHHHHHH---hccCcEEEee
Confidence 36799999999999999886 4589887654
No 144
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=72.95 E-value=14 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=25.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
++.|+.+.|+|++++.+... +-.|.++....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~---~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYT---RVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHH---HHhCceeeccc
Confidence 57899999999999999995 45798876544
No 145
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.26 E-value=18 Score=25.95 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=23.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
+.|+++.|.|++++.+...+.+-..|.++...+
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec
Confidence 369999999999999988522222588765443
No 146
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.61 E-value=11 Score=25.82 Aligned_cols=50 Identities=18% Similarity=-0.005 Sum_probs=34.0
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCC-CCceEEEEECCCCCEEE
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTV 206 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~-~~~~~~~~~DPdG~~iE 206 (220)
+...|-..++.++...+.+.|+.|...-....+ .....||+.|++|+.|+
T Consensus 6 v~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 6 VDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred EEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 345554555666666668999998866543333 23488999999999873
No 147
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=71.25 E-value=15 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
++.|++|.|+|++++.+... +-.|.++..
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~---~vLG~~~~~ 34 (166)
T cd09014 6 RLDHVNLLASDVDANRDFME---EVLGFRLRE 34 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHH---HccCCEEEE
Confidence 67899999999999999996 468987643
No 148
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=71.17 E-value=18 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=23.2
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeecCC
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITRQP 184 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p 184 (220)
.|++|.|.|++++.+... .-.|.++....
T Consensus 2 ~hi~l~v~d~~~s~~FY~---~~lG~~~~~~~ 30 (114)
T cd07247 2 VWFELPTTDPERAKAFYG---AVFGWTFEDMG 30 (114)
T ss_pred EEEEeeCCCHHHHHHHHH---hccCceeeecc
Confidence 599999999999999885 34698876544
No 149
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=70.21 E-value=16 Score=27.10 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=22.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
++|+++.|.|++++.+... .-.|.++..
T Consensus 1 i~HV~l~V~Dl~~a~~FY~---~~LG~~~~~ 28 (131)
T cd08363 1 INHMTFSVSNLDKSISFYK---HVFMEKLLV 28 (131)
T ss_pred CceEEEEECCHHHHHHHHH---HhhCCEEec
Confidence 4699999999999999886 467887653
No 150
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=69.89 E-value=22 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.113 Sum_probs=24.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|+++.|+|++++.+... .-.|.++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~---~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFT---DVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHH---hCcCCEEEee
Confidence 68899999999999998885 4568876543
No 151
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=67.18 E-value=44 Score=25.34 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=26.8
Q ss_pred eeccccCcceeeeEEEEECCHHHHHHHHHHh--cCCEEEE
Q 027676 14 LEWPKKDKRRFLHAVYRVGDLDRTIKFYTEC--FGMKLLR 51 (220)
Q Consensus 14 ~~~~~~~~~~l~Hi~l~V~Dle~s~~FY~~v--LG~~~~~ 51 (220)
+........+++|+++.|.|++...++|+.+ .|.++..
T Consensus 47 ~~~~~~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 47 FAVGPASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred eeeccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 3333445578999999999988776666654 5777654
No 152
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=65.45 E-value=30 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.+.|+++.|.|++++.+... +-.|.+...
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~---~vLG~~~~~ 34 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFAT---DILGLQVAE 34 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHH---hccCceecc
Confidence 57799999999999998885 346887643
No 153
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=64.29 E-value=64 Score=26.30 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=39.4
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCc-eeEEEe----eecCCCceeEEEEEeecCCcccCCCCceeE
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFL----GFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~l----~~g~~~~~~~lel~~~~~~~~~~~g~~~~~ 95 (220)
...++|++++|.+.+.+-++-+..+-+-..-....-.|+ ...+-+ .++ ...=-.+||.++ .+...--.||.|
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~-~~~I~~vELP~P--~~K~Yp~eGWEH 108 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFG-GWSIDCVELPYP--KDKRYPQEGWEH 108 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEET-TEEEEEEEEE-----SS--SS-EEEE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcC-CeeEEEEEeCCC--CCCCCCCCCceE
Confidence 367999999999999999999998866433222222232 111111 111 011224666543 333334478999
Q ss_pred EEEEeC
Q 027676 96 FAIATE 101 (220)
Q Consensus 96 ~~~~~~ 101 (220)
|-+-++
T Consensus 109 IE~Vip 114 (185)
T PF06185_consen 109 IEFVIP 114 (185)
T ss_dssp EEEE--
T ss_pred EEEEec
Confidence 988776
No 154
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.03 E-value=43 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.1
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
.|+++.|.|++++.+... +..|.++...
T Consensus 2 ~~~~l~v~d~~~s~~Fy~---~~lG~~~~~~ 29 (122)
T cd08354 2 LETALYVDDLEAAEAFYE---DVLGLELMLK 29 (122)
T ss_pred eEEEEEeCCHHHHHHHHH---hccCCEEeec
Confidence 478999999999999995 5789887653
No 155
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=63.69 E-value=33 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
.+.|+++.|+|++++.+... +..|.++.
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~---~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYE---DVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHH---hcCCCEEE
Confidence 57899999999999999886 56888764
No 156
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=63.54 E-value=28 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.0
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
.||+|.|.|++++.+.+. +..|.++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~---~~lG~~~~~ 27 (131)
T cd08343 1 DHVVLRTPDVAATAAFYT---EVLGFRVSD 27 (131)
T ss_pred CcEEEEcCCHHHHHHHHH---hcCCCEEEE
Confidence 489999999999998885 357988754
No 157
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=63.08 E-value=13 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
|+.|+++.|.|++++.+... .-.|.++..
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~---~vLG~~~~~ 29 (121)
T cd07244 1 GINHITLAVSDLERSVAFYV---DLLGFKLHV 29 (121)
T ss_pred CcceEEEEECCHHHHHHHHH---HhcCCEEEE
Confidence 47899999999999999996 568887654
No 158
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=62.52 E-value=15 Score=27.06 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=37.0
Q ss_pred EEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCE
Q 027676 156 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWK 204 (220)
Q Consensus 156 af~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~ 204 (220)
+|....++..++.+....+..|+.+. +|.++|.....+.-++.|+|+.
T Consensus 12 s~d~~~LD~~~~~Ive~akrtg~~v~-GPiPLPTk~~~~tvlrsP~~~k 59 (104)
T COG0051 12 SFDHRLLDQVCREIVETAKRTGADVK-GPIPLPTKRERVTVLRSPHGEK 59 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCeee-CCccCCCceEEEEEEeCCCCCC
Confidence 35667788999999888889999874 5667777655777779998873
No 159
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=62.32 E-value=32 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.2
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
++.|+++.|.|++++.+... .-.|.++.
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~---~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYR---DELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHH---hccCCEEE
Confidence 57899999999999998885 34888765
No 160
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=61.53 E-value=29 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=21.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 154 QVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 154 Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
|+++.|+|++++.+... +-.|.++...
T Consensus 1 Hv~l~v~d~~~s~~Fy~---~~lg~~~~~~ 27 (113)
T cd08345 1 HITLIVKDLNKSIAFYR---DILGAELIYS 27 (113)
T ss_pred CeeEEECCHHHHHHHHH---HhcCCeeeec
Confidence 78999999999999886 4588776543
No 161
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=60.39 E-value=58 Score=23.07 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=34.3
Q ss_pred cceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEEe
Q 027676 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY 80 (220)
Q Consensus 21 ~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~ 80 (220)
...+.|+++.|.|.++..+.- +.+|.........+.+... .|+. .+++..+||.+
T Consensus 55 ~~~~~~~af~v~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~---DPdG~~iEl~~ 109 (113)
T cd07267 55 KARFVGAAFEAASRADLEKAA-ALPGASVIDDLEAPGGGKR-VTLT---DPDGFPVELVY 109 (113)
T ss_pred cCcccEEEEEECCHHHHHHHH-HcCCCeeecCCCCCCCceE-EEEE---CCCCCEEEEEe
Confidence 357889999999999888885 5688876543222333322 3332 13455677753
No 162
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.81 E-value=25 Score=24.21 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=34.6
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCC-CCceEEEEECCCCCEEE
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTV 206 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~-~~~~~~~~~DPdG~~iE 206 (220)
+.+.|-..++-.+...+.+.|+.|...-....+ .....||++|.+|..|+
T Consensus 6 V~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 6 VQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 455665566666666668999988765433222 23488999999999873
No 163
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=59.72 E-value=49 Score=23.41 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.5
Q ss_pred eeEEEEECCHHHHHHHHHHhcCCEEEEe
Q 027676 25 LHAVYRVGDLDRTIKFYTECFGMKLLRK 52 (220)
Q Consensus 25 ~Hi~l~V~Dle~s~~FY~~vLG~~~~~~ 52 (220)
.|+.+.|.|+++..+...+ .|.++...
T Consensus 68 ~~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 68 LILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 4899999999999999976 68876544
No 164
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.73 E-value=25 Score=22.85 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=20.7
Q ss_pred ceeeEEEEeC--CHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~--Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
+...+.|.++ |.+++.+.| +++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 4555666665 766677777 7999998775
No 165
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=57.18 E-value=46 Score=23.42 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=29.5
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEech
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 211 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~ 211 (220)
|+|.|+|++++.+... +-.|.++...+. ....++.. +|..+++++..
T Consensus 2 i~l~v~d~~~a~~FY~---~~lg~~~~~~~~------~~~~~~~~-~~~~~~l~~~~ 48 (121)
T cd07251 2 ITLGVADLARSRAFYE---ALLGWKPSADSN------DGVAFFQL-GGLVLALFPRE 48 (121)
T ss_pred eeEeeCCHHHHHHHHH---HhcCceecccCC------CceEEEEc-CCeEEEEecch
Confidence 6789999999888885 456888754411 12333433 55666666543
No 166
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=57.07 E-value=44 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
++.|+.|.|.|++++.+... +-.|.++.
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~---~~lG~~~~ 30 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYR---EVWGLSVV 30 (120)
T ss_pred eeeEEEEecCCHHHHHHHHH---hCcCcEEE
Confidence 68899999999999999885 45787765
No 167
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=56.23 E-value=35 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEEEEEechh
Q 027676 161 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 212 (220)
Q Consensus 161 Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv~~~~ 212 (220)
+++++.+.+ ++.|+++..-- +...+.+.+...|.||+.+|+.-...
T Consensus 30 ~~~~~~~~l----~~~G~~v~~ve--~~~~g~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREVE--FDDDGCYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHH----HhcCCceEEEE--EcCCCEEEEEEEECCCCEEEEEEcCC
Confidence 456777777 68998654322 21223477889999999999976543
No 168
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=56.13 E-value=19 Score=25.81 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=24.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|+.+.|+|++++.+.+. +-.|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~---~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYV---DVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHH---hccCCEEecc
Confidence 57899999999999999885 4478887544
No 169
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=56.11 E-value=17 Score=25.36 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=23.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
++.|+++.|+|++++.+... ...|.++...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~---~~LG~~~~~~ 31 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYT---DVLGLRLVKD 31 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHH---hhcCCeeeee
Confidence 46799999999999999885 3488877554
No 170
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=55.34 E-value=26 Score=26.58 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=26.5
Q ss_pred ccCCceeeEEEEeCCHHHHHHHHHHHHHHcCCeeec
Q 027676 147 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 182 (220)
Q Consensus 147 ~~~~g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~ 182 (220)
+..-++.|+++.|.|++++.+... .-.|.++..
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~---~vLG~~~~~ 45 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYT---EVLGMKLLR 45 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHH---HhcCCEEEE
Confidence 344589999999999999999985 457887754
No 171
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=54.21 E-value=19 Score=27.33 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=23.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
.+.|+++.|.|++++++... .-.|.++.
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~---~vLGf~~~ 33 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFT---DVLDFYLA 33 (143)
T ss_pred eeCEEEEecCCHHHHHHHHH---HhcCCEEE
Confidence 57899999999999998875 46898764
No 172
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=54.06 E-value=83 Score=24.69 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=41.9
Q ss_pred eeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecC-----CCceeEEEEEeecCCcccCCCCceeEEEE
Q 027676 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP-----EQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (220)
Q Consensus 24 l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-----~~~~~~lel~~~~~~~~~~~g~~~~~~~~ 98 (220)
++|++++|.+.+.+-+|-+..+-+-..-....-.|+ -.+.+.+.. ...=..+||.+ +.....--.+|.||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGR-PI~l~~L~qPl~~~~~~I~cvELP~--P~~k~Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGR-PIALIKLEKPLQFAGWSISIVELPF--PKDKKYPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe-eEEEEEcCCCceeCCcEEEEEEeCC--CCCCCCCCCCceEEEE
Confidence 689999999999999999887755322211111222 122222211 01112466643 2223334478999888
Q ss_pred EeC
Q 027676 99 ATE 101 (220)
Q Consensus 99 ~~~ 101 (220)
-++
T Consensus 79 Vlp 81 (149)
T cd07268 79 VIP 81 (149)
T ss_pred Eec
Confidence 776
No 173
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.26 E-value=29 Score=21.88 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 180 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i 180 (220)
+...+.|.+++.+.+.+.| +++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L----~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVL----QERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHH----HHCCceE
Confidence 5667889999988887877 7899876
No 174
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.79 E-value=56 Score=22.07 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=32.0
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCC-cccCCC-CceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQP-GSIPGL-NTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p-~~~~~~-~~~~~~~~DPdG~ 203 (220)
+.+.|-..++.++...+.+.|+.|..-- .+..++ ....||+.|++|.
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 4556656666666666689999988643 322333 3478999999888
No 175
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=50.59 E-value=33 Score=30.16 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=34.2
Q ss_pred eeEEEEE-----CCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeec
Q 027676 25 LHAVYRV-----GDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG 68 (220)
Q Consensus 25 ~Hi~l~V-----~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g 68 (220)
+|++|++ ..++.-.++|. .|||+.+..++++.-+....++...
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~-~lGy~~~G~Y~f~~kkl~a~~f~p~ 83 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFA-ALGYEPVGYYDFPAKKLHATWFRPP 83 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHH-TTTEEEEEEEEEGGGTEEEEEEEET
T ss_pred eeeEEEecCCCchhHHHHHHHHH-HcCCEEcceecccccCceEEEecCC
Confidence 9999994 57888899994 7999999998888766666666543
No 176
>PRK06724 hypothetical protein; Provisional
Probab=49.99 E-value=30 Score=25.83 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=22.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
++.||++.|.|+++..+...+.+--.|.+..
T Consensus 7 ~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 6899999999999988877543323566643
No 177
>PRK11700 hypothetical protein; Provisional
Probab=49.84 E-value=1e+02 Score=25.15 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=43.6
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCC-----CceeEEEEEeecCCcccCCCCceeEE
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFGHF 96 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-----~~~~~lel~~~~~~~~~~~g~~~~~~ 96 (220)
..++||+++|.+.+.+-+|-+..+-+-..-....-.|+ ..+.+.+... ..=-++||.+ +.+...--.+|.||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR-PI~l~~L~qPl~~~~w~I~cvELP~--P~~k~Yp~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGR-PICLFELDQPLQVGHWSIDCVELPY--PGEKRYPHEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe-eEEEEEcCCCceeCCcEEEEEEeCC--CCCCCCCCCCceEE
Confidence 57899999999999999999887755322211112222 1222222110 1112466643 33333344789998
Q ss_pred EEEeC
Q 027676 97 AIATE 101 (220)
Q Consensus 97 ~~~~~ 101 (220)
-+.++
T Consensus 115 ElVlp 119 (187)
T PRK11700 115 ELVLP 119 (187)
T ss_pred EEEec
Confidence 88776
No 178
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=49.24 E-value=31 Score=25.05 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=34.5
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 203 (220)
|....++..++.+.+.++..|+++. +|.++|....++...+.|.|+
T Consensus 10 ~d~~~Ld~~~~~I~~~ak~~g~~~~-GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 10 TNVRSLEKVCAQIKRIAEKTGVRMS-GPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEE-CCccCCcceEEEEeeeCCCCC
Confidence 4556688899999888899999965 555677755566777999864
No 179
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.06 E-value=44 Score=22.19 Aligned_cols=52 Identities=21% Similarity=0.051 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCC-cccCCC-CceEEEEECCCCCEEE
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQP-GSIPGL-NTKITSFVDPDGWKTV 206 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p-~~~~~~-~~~~~~~~DPdG~~iE 206 (220)
+.+.+.|-..++.++...+...|+.|..-- .+.+++ ....|++.|++|..++
T Consensus 4 i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~ 57 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIG 57 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCC
Confidence 445666767777777777789999988743 334332 3477999999998754
No 180
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=48.85 E-value=91 Score=21.83 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=23.7
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEee
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR 53 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~ 53 (220)
....|+.+.|.|+++..+-..+ .|.+++.+.
T Consensus 67 ~~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~ 97 (122)
T cd07246 67 GTPVSLHLYVEDVDATFARAVA-AGATSVMPP 97 (122)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeEecCc
Confidence 4567999999999987776654 588877654
No 181
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=48.43 E-value=92 Score=21.73 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=24.1
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEe
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRK 52 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~ 52 (220)
....|+.+.|.|++++.+-.++ .|.++...
T Consensus 56 ~~~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 56 TVVPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCCCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 3467999999999999888864 78887653
No 182
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=47.41 E-value=28 Score=25.15 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=34.6
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 203 (220)
|....++..++.+...++..|+++. +|.++|....++..++.|.++
T Consensus 10 ~d~~~L~~~~~~i~~~a~~~gi~~~-gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 10 YDHRLLDQSTKKIVETAKRTGAQVK-GPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcee-cccCCCCEEEEEEEeeCCCCC
Confidence 4556678888888888889999985 556677655566777899876
No 183
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=46.43 E-value=1e+02 Score=21.83 Aligned_cols=55 Identities=5% Similarity=-0.017 Sum_probs=32.2
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhcCCEEEEeecCCCCceeEEEeeecCCCceeEEEEE
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELT 79 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~ 79 (220)
....|+.+.|.|+++..+--++.=|.++.........+.+.+++.- +++..+++.
T Consensus 63 ~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~D---PdGn~iei~ 117 (120)
T cd09011 63 SNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYD---PDKHIIEVG 117 (120)
T ss_pred CCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCccEEEEEEC---CCCCEEEEe
Confidence 3457999999999999999976333455543222222223444442 344556653
No 184
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=45.13 E-value=35 Score=24.92 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=34.7
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 203 (220)
|....++..++.+.+.++..|+.+. +|.++|....++..++.|.++
T Consensus 16 ~d~~~L~~~~~~I~~~~k~~~~~~~-GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 16 FNHELLNSSCKKIIDTASRTNATAV-GPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEe-CCcCCCcEEEEEEEecCCCCC
Confidence 5667788899999888888998875 455667655577778999775
No 185
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=44.90 E-value=1e+02 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.6
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 153 AQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 153 ~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
.++.+.|+|++++.+.. +..|.+..
T Consensus 2 ~~v~l~V~Dl~~s~~FY----~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFY----TALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHH----HHCCCEEc
Confidence 46889999999999988 45898765
No 186
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=44.71 E-value=43 Score=27.30 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=21.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
-.+|||++|.+ .+.+++++..+.+.| ++.++
T Consensus 34 ~~DHialRvn~-~~~A~~~~~~l~~~G-~llSe 64 (185)
T PF06185_consen 34 EIDHIALRVNS-NETAERWKQALLQCG-ELLSE 64 (185)
T ss_dssp EEEEEEEE-S--HHHHHHHHHHHTTTE-EEEEE
T ss_pred CCcEEEEecCC-HHHHHHHHHHHHHhC-hhhhh
Confidence 46899999999 588888877777777 44443
No 187
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=44.12 E-value=40 Score=25.29 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=34.9
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 203 (220)
|....++..++.+.+.+++.|+.+. +|.++|....++...+.|.|+
T Consensus 26 ~d~~~Ld~~~~~Ii~~ak~~g~~v~-GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 26 KNLKSIEKVCADIITGAKEKNLKVT-GPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEeE-CCccCCceeEEEEeeeCCCCC
Confidence 4556688899999888899999975 455677755566677899976
No 188
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=44.06 E-value=37 Score=24.75 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=34.2
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 203 (220)
|....++..++.+...++..|+++. +|.++|-...++..++.|.|+
T Consensus 13 ~d~~~L~~~~~~i~~~a~~~~i~v~-GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 13 FDHRLLDQSAKKIVETAKRTGAQVR-GPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEE-CCcCCCcEEEEEEEeeCCCCC
Confidence 4556678888888888888999975 455677655577778899876
No 189
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=43.50 E-value=43 Score=24.47 Aligned_cols=46 Identities=15% Similarity=0.326 Sum_probs=34.4
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCC
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 203 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 203 (220)
|....++.+++.+.+.++..|+++. +|.++|....++...+.|.|+
T Consensus 11 ~d~~~Ld~~~~~I~~~~k~~g~~~~-GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 11 TNPEDLDEVCDQIKEIAEKTGVDMS-GPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEE-CCCcCCceeEEEEeeeCCCCC
Confidence 4555688889999888899999875 455677655566777999865
No 190
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=43.48 E-value=1.1e+02 Score=21.57 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.8
Q ss_pred eeEEEEECCHHHHHHHHHHhcCCEEEEe
Q 027676 25 LHAVYRVGDLDRTIKFYTECFGMKLLRK 52 (220)
Q Consensus 25 ~Hi~l~V~Dle~s~~FY~~vLG~~~~~~ 52 (220)
.|++|.|+|++++.+.-.+ .|.++...
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 4899999999999888864 68877654
No 191
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=42.26 E-value=43 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHcCCeeecC
Q 027676 154 QVAISTDDVYKSAEVVNLVTQELGGKITRQ 183 (220)
Q Consensus 154 Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~~~ 183 (220)
||.|.|+|++++.+... ...|.++...
T Consensus 2 Hi~l~v~Dl~~s~~FY~---~~lG~~~~~~ 28 (125)
T cd08357 2 HLAIPVRDLEAARAFYG---DVLGCKEGRS 28 (125)
T ss_pred eEEEEeCCHHHHHHHHH---HhcCCEEeec
Confidence 89999999999999885 4589877543
No 192
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=41.67 E-value=83 Score=21.67 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=21.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
+.=..+|+++++++|.+++++.|..-.
T Consensus 20 v~~~~~d~d~Al~eM~e~A~~lGAnAV 46 (74)
T TIGR03884 20 VSTESDNVDEIVENLREKVKAKGGMGL 46 (74)
T ss_pred EEEecCCHHHHHHHHHHHHHHcCCCEE
Confidence 334667999999999999999997543
No 193
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.63 E-value=78 Score=20.98 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=34.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCCc-ccCCCCceEEEEECCCCCEE
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQPG-SIPGLNTKITSFVDPDGWKT 205 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~-~~~~~~~~~~~~~DPdG~~i 205 (220)
+.+.++|-...+.++...+.+.|+.|..-.. +..+.....+++.||+|..+
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~ 55 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV 55 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC
Confidence 5567788777777777777899999865322 22122236688899999853
No 194
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.12 E-value=1.3e+02 Score=23.56 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=22.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 152 YAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 152 ~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
.+|||++|.+ .+++++++..+.+.|--+.
T Consensus 2 ~DHialR~n~-~~~A~~w~~~l~~~G~llS 30 (149)
T cd07268 2 IDHIALRVNE-NQTAERWKEGLLQCGELLS 30 (149)
T ss_pred CceEEEeeCC-HHHHHHHHHHHHHhchhhh
Confidence 3699999999 4888888777777775554
No 195
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.49 E-value=78 Score=21.14 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=31.7
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecC-CcccCCCCceEEEEECCC-CCEE
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQ-PGSIPGLNTKITSFVDPD-GWKT 205 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~-p~~~~~~~~~~~~~~DPd-G~~i 205 (220)
+...|-..++..+...+.+.|+.|..- .....+.....+++.||+ |..+
T Consensus 5 v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~ 55 (74)
T cd04925 5 LTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPI 55 (74)
T ss_pred EEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCC
Confidence 345555666666666668999998864 333322233678889998 7653
No 196
>PRK11700 hypothetical protein; Provisional
Probab=34.66 E-value=1.5e+02 Score=24.26 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=23.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCeee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 181 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i~ 181 (220)
-.+|||++|.+ .+++++++..+.+.|--+.
T Consensus 39 ~~DHialR~n~-~~tAe~w~~~l~~~G~llS 68 (187)
T PRK11700 39 EADHIALRCNQ-NETAERWRQGFLQCGELLS 68 (187)
T ss_pred cCcEEEEeeCC-HHHHHHHHHHHHHhchhhh
Confidence 46799999999 4888888877777776554
No 197
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.16 E-value=2.1e+02 Score=22.56 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=37.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCC--eeecCCcc---------c---CC-----CCceEEEEECCCCCEEEEEec
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGG--KITRQPGS---------I---PG-----LNTKITSFVDPDGWKTVLVDN 210 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~--~i~~~p~~---------~---~~-----~~~~~~~~~DPdG~~iElv~~ 210 (220)
|..-|+++++++.+..+.. .+.|. ++.+.+.. . +. +..|..|+.|+||.+..+...
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~----~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~ 138 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFA----EKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRK 138 (157)
T ss_pred CCEEEEEeCCCHHHHHHHH----HHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecC
Confidence 7788999999976555555 46665 44444321 0 11 134889999999999888743
No 198
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=28.28 E-value=2.1e+02 Score=20.04 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=22.6
Q ss_pred ceeeeEEEEECCHHHHHHHHHHhc--CCEEEE
Q 027676 22 RRFLHAVYRVGDLDRTIKFYTECF--GMKLLR 51 (220)
Q Consensus 22 ~~l~Hi~l~V~Dle~s~~FY~~vL--G~~~~~ 51 (220)
..+.|+++.|.|.+.-.++|..+- |.++..
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~ 88 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFK 88 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEc
Confidence 478999999999766666666544 777654
No 199
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.09 E-value=1.5e+02 Score=20.31 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=31.8
Q ss_pred EEeCCHHHHHHHHHHHHHHcCCeeecCCcc--cCCC-CceEEEEECCCCCE
Q 027676 157 ISTDDVYKSAEVVNLVTQELGGKITRQPGS--IPGL-NTKITSFVDPDGWK 204 (220)
Q Consensus 157 f~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~--~~~~-~~~~~~~~DPdG~~ 204 (220)
+.+.|-..++.++.+.+.+.|+.+...-.. ..+. ....||+ |.+|..
T Consensus 5 v~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 5 IRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred EEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 455665666666766668999998866444 3332 2377888 998887
No 200
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=27.05 E-value=83 Score=19.90 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=31.8
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecCCcc-cCCCCceEEEEECCCCCE
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQPGS-IPGLNTKITSFVDPDGWK 204 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~-~~~~~~~~~~~~DPdG~~ 204 (220)
+.+.++|-...+..+...+.+.|+.|..--.. ..+.....+++.+|+|..
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~ 53 (70)
T cd04873 3 VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP 53 (70)
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc
Confidence 45677776666666666668999988653322 122222557778998875
No 201
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.52 E-value=1.6e+02 Score=19.02 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=20.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHHHHHcCCee
Q 027676 151 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 180 (220)
Q Consensus 151 g~~Hiaf~v~Dv~a~~~~l~~~~~~~G~~i 180 (220)
+..++.+.+.+ .+-.+.+...++++|+++
T Consensus 38 ~~v~v~ie~~~-~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPD-REDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHHHHcCCCc
Confidence 55668888887 455666666668999875
No 202
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=24.17 E-value=1.8e+02 Score=24.91 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=28.8
Q ss_pred EeCCHHHHHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCEE
Q 027676 158 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKT 205 (220)
Q Consensus 158 ~v~Dv~a~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~i 205 (220)
.+.|+..-++.+...++++|+++..... ..-.+|+.|||++.+
T Consensus 142 ~t~D~~~h~~~i~k~wk~rgi~F~~~k~-----slISV~~h~~d~~~l 184 (250)
T PF14133_consen 142 NTKDIKVHAEKIQKYWKERGIKFNNDKA-----SLISVFLHDPDDNSL 184 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCceeCCCce-----EEEEEEEEcCCCCeE
Confidence 3457788888888888999999821111 124567777776654
No 203
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.30 E-value=95 Score=16.05 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=9.2
Q ss_pred eEEEEECCCCCEE
Q 027676 193 KITSFVDPDGWKT 205 (220)
Q Consensus 193 ~~~~~~DPdG~~i 205 (220)
-...++|++|+++
T Consensus 7 I~~i~~D~~G~lW 19 (24)
T PF07494_consen 7 IYSIYEDSDGNLW 19 (24)
T ss_dssp EEEEEE-TTSCEE
T ss_pred EEEEEEcCCcCEE
Confidence 3467799999987
No 204
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=22.65 E-value=32 Score=21.39 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=18.6
Q ss_pred eeeeEEEEECCHHHHHHHHHHhc
Q 027676 23 RFLHAVYRVGDLDRTIKFYTECF 45 (220)
Q Consensus 23 ~l~Hi~l~V~Dle~s~~FY~~vL 45 (220)
-++-.++.+++.+++.+||...|
T Consensus 11 p~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 11 PVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred ccccCCCccccccchhHHHHHHH
Confidence 45566777799999999999865
No 205
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=22.64 E-value=64 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.792 Sum_probs=13.6
Q ss_pred EECCHHHHHHHHHHhcCC
Q 027676 30 RVGDLDRTIKFYTECFGM 47 (220)
Q Consensus 30 ~V~Dle~s~~FY~~vLG~ 47 (220)
...|.++++.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 346899999999997744
No 206
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.00 E-value=1.4e+02 Score=19.89 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=22.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHHcCCeeecC-CcccCCCCceEEEEECCCC
Q 027676 155 VAISTDDVYKSAEVVNLVTQELGGKITRQ-PGSIPGLNTKITSFVDPDG 202 (220)
Q Consensus 155 iaf~v~Dv~a~~~~l~~~~~~~G~~i~~~-p~~~~~~~~~~~~~~DPdG 202 (220)
+.|.+.|-..++..+....++.|+.+..= .++.++......|+.|=+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 34444442222333333337899865531 2223333335566677666
No 207
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.87 E-value=94 Score=23.65 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.1
Q ss_pred cccceeeccccCcceeeeEEEEECCHHHHHHHHHHhcCCEEEE
Q 027676 9 ANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLR 51 (220)
Q Consensus 9 ~~~~~~~~~~~~~~~l~Hi~l~V~Dle~s~~FY~~vLG~~~~~ 51 (220)
++-|+.+.+-.+-.-++-+-+.|++.+.+.+-..+ -||.+..
T Consensus 27 agINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~ 68 (142)
T COG4747 27 AGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEE-AGFTVRE 68 (142)
T ss_pred cCCceEEEEeccccCcceEEEEcCChHHHHHHHHH-CCcEEEe
Confidence 44566666666666677778888999999888866 5887643
Done!