BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027677
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 117/189 (61%), Gaps = 1/189 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 60
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 61 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 120
Query: 121 DPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180
+ + D++ + ++ +++ +M+ NID V +RG+RLELL+DKT N+ ++ F+ +R
Sbjct: 121 NKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLA 180
Query: 181 STVWWRNVK 189
+ +N+K
Sbjct: 181 RAMCMKNIK 189
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 8 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 66
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL +I +RF TYG +A Y MN EFS VL+ Q++++S
Sbjct: 67 IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAPPYAMNSEFSSVLAAQLKHHSS 126
Query: 121 DPNA 124
P++
Sbjct: 127 GPSS 130
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
Length = 173
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 112
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 113 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172
Query: 121 D 121
+
Sbjct: 173 N 173
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
Length = 169
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 102
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQME 116
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++
Sbjct: 103 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLK 158
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 38 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 97
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKV 148
+ +G+ V + EF + + + Y D + I E+ V+ +M+ NI++V
Sbjct: 98 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 157
Query: 149 LERGDRLELLVDKTANMQGNTFRFRKQAR--RFRST 182
L+RG+ L L K N+ + ++R+ A+ RST
Sbjct: 158 LQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST 193
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%)
Query: 122 PNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181
P D+I ++ ++ +V +VM ENI KV+ERG+RL+ L DK+ ++ N F ++++ R
Sbjct: 5 PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRR 64
Query: 182 TVWWRNVKL 190
+WWR K+
Sbjct: 65 QMWWRGCKI 73
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 42 SHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGR------A 94
S S + Y+ HV R+D L + +AD R+ F LE + F K R +
Sbjct: 56 SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGS 115
Query: 95 VLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDR 154
+ ++ SR Y + AD +++++ E+ + + ++ ++ +LERG++
Sbjct: 116 PATIHYTALDGHLSR--------YQNPREADPMSKVQAELDETKIILHNTMESLLERGEK 167
Query: 155 LELLVDKTANMQGNTFRFRKQARR 178
L+ LV K+ + + F K AR+
Sbjct: 168 LDDLVSKSEVLGTQSKAFYKTARK 191
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKV 148
+ +G+ V + EF + + + Y D + I E+ V+ +M+ NI++V
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156
Query: 149 L 149
L
Sbjct: 157 L 157
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWW 185
R+ + + ++ +V ++M N+DKVLER +L L D+ +Q +F A + + WW
Sbjct: 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 65
Query: 186 RNVKLTV 192
+N+K+ +
Sbjct: 66 KNLKMMI 72
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWW 185
R+ + + ++ +V ++M N+DKVLER +L L D+ +Q +F A + + WW
Sbjct: 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 93
Query: 186 RNVKLTV 192
+N+K+ +
Sbjct: 94 KNLKMMI 100
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWW 185
R+ + + ++ +V ++M N+DKVLER +L L D+ +Q +F A + + WW
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 186 RNVKL 190
+N+K+
Sbjct: 91 KNLKM 95
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWW 185
R+ + + ++ +V ++M N+DKVLER ++ L D+ +Q +F A + + WW
Sbjct: 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75
Query: 186 RNVKL 190
+N K+
Sbjct: 76 KNCKM 80
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWW 185
R+ + + ++ +V ++M N+DKVLER +L L D+ +Q +F A + + WW
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 64
Query: 186 RN 187
+N
Sbjct: 65 KN 66
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 37/54 (68%)
Query: 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARR 178
DR+ ++ E+ V+N+M +N++++L RG+ L+ L +KT +++ + F+ +++
Sbjct: 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQK 62
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184
R ++ E+ +M +NI+KV ERG+RL + DK N+ + F++ A R R +W
Sbjct: 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184
R+ + + ++ +V ++M N+DKVLER +L L D+ +Q +F A + + W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 48 AKQLFRKLNEQSPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 107
Query: 89 KTYGRAV 95
+ +G+ V
Sbjct: 108 EQHGKKV 114
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 119 SDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRL 155
S + DR+ ++ E+ V+N+M +N++++L RG+ L
Sbjct: 274 SGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310
>pdb|1I0L|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Asparagine
Mutant
pdb|1I0L|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Asparagine
Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVNTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1P17|A Chain A, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P17|B Chain B, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P17|C Chain C, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P17|D Chain D, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P18|A Chain A, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Ternary Substrates Complex
pdb|1P18|B Chain B, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Ternary Substrates Complex
Length = 221
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1I0I|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamine
Mutant
pdb|1I0I|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamine
Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVQTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1TC2|A Chain A, Ternary Substrate Complex Of The Hypoxanthine
Phosphoribosyltransferase From Trypanosoma Cruzi
pdb|1TC2|B Chain B, Ternary Substrate Complex Of The Hypoxanthine
Phosphoribosyltransferase From Trypanosoma Cruzi
pdb|1P19|A Chain A, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
pdb|1P19|B Chain B, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
pdb|1P19|C Chain C, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
pdb|1P19|D Chain D, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
Length = 221
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1I14|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamic
Acid Mutant
pdb|1I14|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamic
Acid Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVETALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1I13|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Alanine
Mutant
pdb|1I13|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Alanine
Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVATALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1TC1|A Chain A, A 1.4 Angstrom Crystal Structure For The Hypoxanthine
Phosphoribosyltransferase Of Trypanosoma Cruzi
pdb|1TC1|B Chain B, A 1.4 Angstrom Crystal Structure For The Hypoxanthine
Phosphoribosyltransferase Of Trypanosoma Cruzi
Length = 220
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 67 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMY 126
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 127 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 168
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 76 PFAFLEDIHQRFVKTYGRAV--LSAQAYGMNDEFSRVLSQQMEYY 118
P A LE++ + V + RA+ LSA AYG+ +R+ ++ YY
Sbjct: 323 PIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYY 367
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIEN 144
EF R+ + Q E Y DPN + + R E+S++ I +
Sbjct: 412 EFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 450
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYG 102
LT C+A D G RIP L V T G +VL+A A G
Sbjct: 344 LTYFCVAGDVEGARIPAYILP------VDTDGTSVLTAWAAG 379
>pdb|3NDY|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDZ|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
Length = 345
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 25 ASAIARQILDKIPGNNDSHVSYSQDRY--IFHVKRTDGLTVLCMADDTAGRRIPFAFLED 82
ASA++ I D + NNDS V S Y F +G + D + F +
Sbjct: 200 ASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEF---DA 256
Query: 83 IHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRI 130
++ +FVK GRAV+ + +N + EYY+ A + I
Sbjct: 257 VYNKFVKN-GRAVVIGEMGSINKNNTAARVTHAEYYAKSAKARGLTPI 303
>pdb|2JAA|A Chain A, Semet Substituted Shigella Flexneri Ipad
pdb|2JAA|B Chain B, Semet Substituted Shigella Flexneri Ipad
Length = 212
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 80 LEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVR 138
+ DI+++++K Y AV S Q Y +FS VLS + S P + N +K +++ ++
Sbjct: 22 INDINEQYLKVYEHAVSSYTQXY---QDFSAVLSSLAGWIS--PGGNDGNSVKLQVNSLK 76
Query: 139 NVMIE 143
+ E
Sbjct: 77 KALEE 81
>pdb|2J0N|A Chain A, A Proteolytically Truncated Form Of Shigella Flexneri Ipad
pdb|2J0N|B Chain B, A Proteolytically Truncated Form Of Shigella Flexneri Ipad
Length = 200
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 80 LEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRN 139
+ DI+++++K Y AV S M +FS VLS + S P + N +K +++ ++
Sbjct: 10 INDINEQYLKVYEHAVSSYTQ--MYQDFSAVLSSLAGWIS--PGGNDGNSVKLQVNSLKK 65
Query: 140 VMIE 143
+ E
Sbjct: 66 ALEE 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,463,988
Number of Sequences: 62578
Number of extensions: 196120
Number of successful extensions: 771
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 36
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)