Query 027677
Match_columns 220
No_of_seqs 150 out of 1000
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 3.3E-69 7.2E-74 412.9 20.7 217 1-217 1-217 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 2E-34 4.3E-39 225.8 21.2 191 3-194 2-203 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 8.4E-32 1.8E-36 203.0 16.3 175 1-181 1-193 (198)
4 KOG0860 Synaptobrevin/VAMP-lik 100.0 1.2E-29 2.6E-34 180.3 12.5 91 120-210 24-114 (116)
5 PF00957 Synaptobrevin: Synapt 100.0 8.5E-29 1.8E-33 173.7 12.1 88 124-211 2-89 (89)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 2.8E-24 6E-29 166.4 15.4 181 1-186 1-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 5.6E-19 1.2E-23 122.2 10.1 81 28-109 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.6 0.00025 5.4E-09 55.7 7.4 80 126-205 95-174 (190)
9 PF03908 Sec20: Sec20; InterP 97.0 0.038 8.3E-07 38.5 11.7 75 129-206 5-89 (92)
10 PF00957 Synaptobrevin: Synapt 96.8 0.041 8.8E-07 38.0 10.6 76 125-204 10-85 (89)
11 KOG0811 SNARE protein PEP12/VA 96.7 0.025 5.4E-07 47.2 10.3 53 125-177 180-236 (269)
12 KOG0810 SNARE protein Syntaxin 96.3 0.047 1E-06 46.3 10.1 71 125-197 206-279 (297)
13 COG5074 t-SNARE complex subuni 96.1 0.074 1.6E-06 43.1 9.4 76 125-200 185-263 (280)
14 PF04086 SRP-alpha_N: Signal r 95.1 0.081 1.8E-06 44.5 6.9 66 26-94 5-72 (279)
15 PF03908 Sec20: Sec20; InterP 94.3 1.2 2.5E-05 31.0 11.6 37 126-162 9-45 (92)
16 PF03904 DUF334: Domain of unk 93.0 2.3 5.1E-05 34.4 10.9 95 107-212 76-173 (230)
17 PF09426 Nyv1_N: Vacuolar R-SN 92.9 1.2 2.5E-05 33.1 8.2 56 30-85 48-110 (141)
18 KOG0860 Synaptobrevin/VAMP-lik 92.3 3.2 7E-05 30.1 9.9 38 144-184 58-95 (116)
19 COG5325 t-SNARE complex subuni 91.3 2.9 6.2E-05 34.9 9.7 64 125-188 195-262 (283)
20 PF04099 Sybindin: Sybindin-li 91.1 3.5 7.5E-05 31.1 9.5 75 41-116 65-141 (142)
21 PF09753 Use1: Membrane fusion 90.7 3.9 8.5E-05 33.8 10.4 23 160-182 199-221 (251)
22 TIGR01149 mtrG N5-methyltetrah 90.2 2.9 6.4E-05 27.3 7.0 29 153-183 19-47 (70)
23 PF05478 Prominin: Prominin; 90.0 4.4 9.4E-05 39.4 11.4 14 201-214 428-441 (806)
24 PTZ00478 Sec superfamily; Prov 89.8 1.5 3.3E-05 29.7 5.7 59 148-206 9-67 (81)
25 PRK01026 tetrahydromethanopter 89.7 3.4 7.5E-05 27.6 7.3 29 153-183 22-50 (77)
26 PF04628 Sedlin_N: Sedlin, N-t 88.9 3 6.4E-05 31.0 7.5 110 7-116 1-131 (132)
27 COG5074 t-SNARE complex subuni 88.8 3.3 7.1E-05 33.8 7.9 28 182-209 248-275 (280)
28 PF10779 XhlA: Haemolysin XhlA 88.7 5 0.00011 26.4 9.4 51 152-205 19-69 (71)
29 PF04210 MtrG: Tetrahydrometha 88.2 5.5 0.00012 26.1 7.5 30 152-183 18-47 (70)
30 KOG0938 Adaptor complexes medi 88.1 14 0.00031 32.0 11.7 114 4-124 5-122 (446)
31 KOG1983 Tomosyn and related SN 88.0 0.51 1.1E-05 46.7 3.6 46 142-187 944-989 (993)
32 KOG0781 Signal recognition par 87.8 7.1 0.00015 35.5 10.2 86 4-92 4-95 (587)
33 PRK09400 secE preprotein trans 86.5 4.1 8.9E-05 26.1 6.0 52 156-207 4-55 (61)
34 KOG2635 Medium subunit of clat 83.0 31 0.00068 31.0 11.6 48 44-91 47-97 (512)
35 PF13800 Sigma_reg_N: Sigma fa 81.7 3.4 7.4E-05 28.8 4.5 13 176-188 5-17 (96)
36 PF06008 Laminin_I: Laminin Do 81.3 21 0.00046 29.6 9.9 62 106-172 178-239 (264)
37 KOG1666 V-SNARE [Intracellular 81.1 27 0.00059 28.2 11.5 19 125-143 128-146 (220)
38 PHA02557 22 prohead core prote 81.1 17 0.00038 30.3 8.9 92 76-167 89-189 (271)
39 KOG0810 SNARE protein Syntaxin 80.7 35 0.00076 29.1 12.1 43 168-210 245-289 (297)
40 PF04799 Fzo_mitofusin: fzo-li 80.5 16 0.00035 28.5 8.1 51 125-175 109-159 (171)
41 cd07912 Tweety_N N-terminal do 80.3 23 0.00049 31.8 10.2 41 104-146 104-144 (418)
42 PF11657 Activator-TraM: Trans 79.5 25 0.00054 26.7 13.7 70 67-146 20-90 (144)
43 KOG3202 SNARE protein TLG1/Syn 79.4 32 0.00068 28.3 10.0 27 125-151 137-163 (235)
44 PF06789 UPF0258: Uncharacteri 77.8 0.84 1.8E-05 34.6 0.4 31 177-210 125-155 (159)
45 PF01217 Clat_adaptor_s: Clath 77.7 26 0.00057 26.0 13.0 50 43-92 47-96 (141)
46 KOG0812 SNARE protein SED5/Syn 76.7 45 0.00098 28.2 10.5 45 125-169 227-274 (311)
47 KOG0809 SNARE protein TLG2/Syn 76.1 16 0.00034 31.0 7.4 34 125-158 218-251 (305)
48 COG4064 MtrG Tetrahydromethano 76.1 19 0.00041 23.6 6.4 28 153-182 22-49 (75)
49 KOG3498 Preprotein translocase 76.0 11 0.00023 24.4 5.0 54 154-207 3-56 (67)
50 KOG3385 V-SNARE [Intracellular 75.2 13 0.00028 27.0 5.8 19 125-143 36-54 (118)
51 TIGR00327 secE_euk_arch protei 75.0 8.1 0.00018 24.8 4.3 45 163-207 7-51 (61)
52 PF05568 ASFV_J13L: African sw 72.3 7.4 0.00016 29.4 4.2 25 187-211 29-53 (189)
53 KOG2678 Predicted membrane pro 71.2 55 0.0012 26.7 9.6 20 158-177 192-211 (244)
54 PF09889 DUF2116: Uncharacteri 70.5 13 0.00028 23.7 4.4 17 188-204 38-54 (59)
55 KOG1666 V-SNARE [Intracellular 70.0 57 0.0012 26.4 11.5 16 181-196 191-206 (220)
56 PF13800 Sigma_reg_N: Sigma fa 69.3 12 0.00026 26.0 4.6 26 178-204 4-29 (96)
57 PF05781 MRVI1: MRVI1 protein; 68.2 21 0.00046 32.8 6.9 22 199-220 486-507 (538)
58 PF08006 DUF1700: Protein of u 67.6 56 0.0012 25.4 10.6 11 78-88 5-15 (181)
59 KOG3894 SNARE protein Syntaxin 67.0 82 0.0018 27.0 10.3 61 107-172 216-283 (316)
60 PF03164 Mon1: Trafficking pro 66.8 50 0.0011 29.5 9.1 86 7-92 16-104 (415)
61 PF12352 V-SNARE_C: Snare regi 63.4 36 0.00077 21.6 8.2 58 124-181 7-64 (66)
62 PF06837 Fijivirus_P9-2: Fijiv 62.5 17 0.00037 28.7 4.5 36 130-165 21-58 (214)
63 KOG3208 SNARE protein GS28 [In 62.1 86 0.0019 25.5 10.4 12 78-89 96-107 (231)
64 COG1422 Predicted membrane pro 60.1 88 0.0019 25.0 11.1 45 125-173 72-118 (201)
65 PF05739 SNARE: SNARE domain; 58.9 41 0.0009 20.9 8.5 42 125-166 4-45 (63)
66 PF08999 SP_C-Propep: Surfacta 57.5 21 0.00045 24.2 3.7 22 187-208 32-53 (93)
67 PF03904 DUF334: Domain of unk 57.3 1.1E+02 0.0023 25.1 10.5 36 136-177 113-148 (230)
68 KOG3369 Transport protein part 57.2 93 0.002 24.4 8.7 73 41-116 121-196 (199)
69 PF13124 DUF3963: Protein of u 56.8 26 0.00057 19.8 3.4 18 182-199 17-34 (40)
70 PRK10884 SH3 domain-containing 55.9 1.1E+02 0.0023 24.7 12.0 24 151-174 130-153 (206)
71 PF07798 DUF1640: Protein of u 55.9 95 0.0021 24.1 11.6 25 125-149 80-104 (177)
72 PF08372 PRT_C: Plant phosphor 55.7 57 0.0012 25.1 6.4 10 177-186 83-92 (156)
73 PF03607 DCX: Doublecortin; I 55.0 18 0.00038 22.9 3.0 48 22-69 8-57 (60)
74 COG0598 CorA Mg2+ and Co2+ tra 54.7 1.3E+02 0.0029 25.6 9.4 12 204-216 276-287 (322)
75 PF01102 Glycophorin_A: Glycop 54.3 19 0.00041 26.5 3.4 17 190-206 66-82 (122)
76 PF02439 Adeno_E3_CR2: Adenovi 53.8 25 0.00055 20.2 3.1 6 205-210 23-28 (38)
77 PRK10600 nitrate/nitrite senso 53.6 1.7E+02 0.0037 26.9 10.5 20 132-151 68-87 (569)
78 KOG0859 Synaptobrevin/VAMP-lik 53.3 79 0.0017 25.3 6.9 79 132-210 125-207 (217)
79 KOG1326 Membrane-associated pr 53.0 21 0.00046 35.2 4.4 43 168-210 1050-1092(1105)
80 KOG0811 SNARE protein PEP12/VA 52.8 1.4E+02 0.003 25.1 9.4 19 168-186 220-238 (269)
81 PF09753 Use1: Membrane fusion 52.2 1.3E+02 0.0029 24.7 9.3 40 158-203 204-243 (251)
82 PF06072 Herpes_US9: Alphaherp 51.9 60 0.0013 20.6 5.5 9 166-174 8-16 (60)
83 PF14992 TMCO5: TMCO5 family 51.8 1.5E+02 0.0032 25.1 11.8 18 178-195 208-225 (280)
84 PF00558 Vpu: Vpu protein; In 51.6 22 0.00049 24.1 3.2 21 190-210 6-26 (81)
85 PF15339 Afaf: Acrosome format 51.6 28 0.00061 27.1 4.1 23 189-211 129-152 (200)
86 PF05957 DUF883: Bacterial pro 51.6 76 0.0017 21.7 10.4 20 132-151 27-46 (94)
87 PRK10132 hypothetical protein; 51.5 88 0.0019 22.4 10.3 14 153-166 41-54 (108)
88 PF03302 VSP: Giardia variant- 51.2 8.9 0.00019 34.1 1.6 13 200-212 383-395 (397)
89 KOG4433 Tweety transmembrane/c 51.2 82 0.0018 28.7 7.5 15 186-200 211-225 (526)
90 PF10498 IFT57: Intra-flagella 50.6 1.6E+02 0.0035 25.9 9.2 27 158-184 317-345 (359)
91 KOG2740 Clathrin-associated pr 49.7 59 0.0013 28.6 6.1 44 49-92 53-96 (418)
92 PF07204 Orthoreo_P10: Orthore 49.5 13 0.00028 25.9 1.8 23 188-210 41-63 (98)
93 COG4327 Predicted membrane pro 49.4 36 0.00079 23.7 3.9 34 175-208 5-38 (101)
94 PHA02650 hypothetical protein; 49.1 15 0.00032 24.7 2.0 15 188-202 50-64 (81)
95 PHA02844 putative transmembran 49.1 16 0.00035 24.2 2.1 13 190-202 51-63 (75)
96 PHA01811 hypothetical protein 48.4 24 0.00053 22.6 2.8 20 41-60 4-23 (78)
97 PF03839 Sec62: Translocation 47.5 27 0.00058 28.5 3.7 13 200-212 161-173 (224)
98 PRK11546 zraP zinc resistance 47.2 1.1E+02 0.0024 23.1 6.7 32 109-142 75-106 (143)
99 cd01617 DCX Ubiquitin-like dom 46.9 85 0.0018 20.9 5.8 54 18-71 21-78 (80)
100 KOG4331 Polytopic membrane pro 46.8 1.2E+02 0.0027 29.6 8.3 38 125-162 328-366 (865)
101 PF00482 T2SF: Type II secreti 46.7 94 0.002 21.3 8.4 14 105-118 29-42 (124)
102 COG5122 TRS23 Transport protei 46.3 1.1E+02 0.0024 22.2 8.5 75 39-116 55-132 (134)
103 KOG3287 Membrane trafficking p 46.2 1.5E+02 0.0033 24.1 7.6 61 140-200 150-215 (236)
104 smart00096 UTG Uteroglobin. 45.7 47 0.001 21.8 3.9 41 111-151 21-62 (69)
105 smart00397 t_SNARE Helical reg 45.7 70 0.0015 19.6 6.6 43 125-167 12-54 (66)
106 KOG3230 Vacuolar assembly/sort 45.4 75 0.0016 25.4 5.6 22 131-152 132-153 (224)
107 KOG3251 Golgi SNAP receptor co 45.0 1.7E+02 0.0036 23.8 10.3 58 144-203 137-205 (213)
108 PF04510 DUF577: Family of unk 44.8 1.5E+02 0.0033 23.2 8.9 106 63-187 66-171 (174)
109 COG3074 Uncharacterized protei 44.7 89 0.0019 20.5 7.4 50 125-174 18-67 (79)
110 KOG2678 Predicted membrane pro 44.6 1.7E+02 0.0037 23.9 7.7 21 166-186 193-213 (244)
111 PHA03011 hypothetical protein; 44.5 1.1E+02 0.0024 21.6 6.9 58 106-165 61-118 (120)
112 PF04888 SseC: Secretion syste 44.4 1.9E+02 0.0042 24.4 9.1 33 134-166 21-53 (306)
113 cd00193 t_SNARE Soluble NSF (N 43.8 71 0.0015 19.2 6.6 43 125-167 6-48 (60)
114 PF01708 Gemini_mov: Geminivir 43.7 8.7 0.00019 26.5 0.3 27 184-210 33-59 (91)
115 PF06008 Laminin_I: Laminin Do 42.9 1.2E+02 0.0025 25.2 7.0 18 100-118 19-36 (264)
116 PF05527 DUF758: Domain of unk 42.8 90 0.0019 24.7 5.8 45 108-153 140-185 (186)
117 PF06825 HSBP1: Heat shock fac 42.4 53 0.0011 20.5 3.6 40 127-169 12-51 (54)
118 PF02038 ATP1G1_PLM_MAT8: ATP1 42.1 65 0.0014 19.7 3.9 18 185-202 11-28 (50)
119 PF14004 DUF4227: Protein of u 42.1 51 0.0011 21.8 3.7 25 183-207 2-26 (71)
120 PF00429 TLV_coat: ENV polypro 41.7 56 0.0012 30.5 5.3 20 125-144 442-461 (561)
121 TIGR03017 EpsF chain length de 41.6 2.5E+02 0.0055 24.9 9.9 40 110-151 269-308 (444)
122 PHA03054 IMV membrane protein; 41.0 24 0.00052 23.2 2.0 12 189-200 50-61 (72)
123 PRK10299 PhoPQ regulatory prot 40.9 42 0.00091 20.1 2.8 24 187-210 3-28 (47)
124 PF14914 LRRC37AB_C: LRRC37A/B 40.8 27 0.00058 26.5 2.5 6 189-194 120-125 (154)
125 PF03238 ESAG1: ESAG protein; 40.6 1.2E+02 0.0025 24.7 6.1 57 142-198 6-62 (231)
126 PF13937 DUF4212: Domain of un 40.5 87 0.0019 21.2 4.8 26 180-205 3-28 (81)
127 PF12751 Vac7: Vacuolar segreg 40.3 32 0.00069 30.4 3.2 25 180-204 294-318 (387)
128 PF10112 Halogen_Hydrol: 5-bro 40.1 1.7E+02 0.0038 22.9 7.3 45 107-151 134-182 (199)
129 PF02009 Rifin_STEVOR: Rifin/s 39.8 23 0.00051 30.2 2.3 54 108-163 34-93 (299)
130 PF12575 DUF3753: Protein of u 39.5 47 0.001 22.0 3.2 8 134-141 24-31 (72)
131 PHA02819 hypothetical protein; 39.3 27 0.00059 22.9 2.0 9 191-199 50-58 (71)
132 cd00633 Secretoglobin Secretog 39.1 64 0.0014 20.7 3.9 42 109-150 17-59 (67)
133 KOG4782 Predicted membrane pro 39.1 1.1E+02 0.0023 21.4 5.0 38 164-201 29-70 (108)
134 PF12420 DUF3671: Protein of u 39.1 1.4E+02 0.003 21.2 6.3 37 155-199 20-56 (104)
135 PHA02975 hypothetical protein; 38.9 45 0.00097 21.8 2.9 12 191-202 48-59 (69)
136 TIGR03545 conserved hypothetic 38.5 1.6E+02 0.0034 27.6 7.6 69 106-174 168-240 (555)
137 TIGR01478 STEVOR variant surfa 38.4 48 0.0011 28.0 3.9 25 191-215 266-290 (295)
138 PF02009 Rifin_STEVOR: Rifin/s 38.1 32 0.00069 29.4 2.9 8 13-20 19-26 (299)
139 COG1459 PulF Type II secretory 38.1 2.9E+02 0.0064 24.6 9.5 19 146-164 129-147 (397)
140 KOG2927 Membrane component of 37.8 43 0.00094 29.2 3.6 29 132-160 126-154 (372)
141 COG1969 HyaC Ni,Fe-hydrogenase 37.6 38 0.00083 27.2 3.0 39 177-215 96-152 (227)
142 PF10168 Nup88: Nuclear pore c 37.4 3.6E+02 0.0077 26.2 10.0 80 71-157 532-614 (717)
143 PF01099 Uteroglobin: Uteroglo 37.1 45 0.00098 21.5 2.9 42 109-150 17-59 (67)
144 KOG3385 V-SNARE [Intracellular 37.0 1.6E+02 0.0036 21.4 6.1 11 190-200 100-110 (118)
145 PF04048 Sec8_exocyst: Sec8 ex 36.6 1.1E+02 0.0024 22.9 5.3 39 126-164 80-118 (142)
146 COG3524 KpsE Capsule polysacch 36.1 56 0.0012 28.0 3.9 17 125-141 230-246 (372)
147 PF05478 Prominin: Prominin; 35.8 4.3E+02 0.0094 25.9 10.8 43 169-211 399-441 (806)
148 PF09125 COX2-transmemb: Cytoc 35.7 87 0.0019 17.8 3.4 14 189-202 14-27 (38)
149 PF07172 GRP: Glycine rich pro 35.4 44 0.00095 23.4 2.8 14 189-202 4-17 (95)
150 PTZ00370 STEVOR; Provisional 35.3 44 0.00096 28.3 3.2 25 191-215 262-286 (296)
151 PF06695 Sm_multidrug_ex: Puta 35.2 1.5E+02 0.0032 21.6 5.7 23 171-195 57-79 (121)
152 PF13228 DUF4037: Domain of un 35.1 1.6E+02 0.0034 20.6 5.9 54 106-163 24-77 (100)
153 PF07296 TraP: TraP protein; 35.0 2E+02 0.0043 22.9 6.5 44 162-206 6-49 (202)
154 PF14575 EphA2_TM: Ephrin type 34.4 49 0.0011 22.0 2.8 16 195-210 8-23 (75)
155 PF00517 GP41: Retroviral enve 33.8 1.9E+02 0.0041 23.1 6.6 18 129-146 105-122 (204)
156 KOG1691 emp24/gp25L/p24 family 33.7 1.9E+02 0.0042 23.3 6.4 32 132-163 144-175 (210)
157 PRK13664 hypothetical protein; 33.3 89 0.0019 19.7 3.5 16 184-199 3-18 (62)
158 PF14712 Snapin_Pallidin: Snap 33.3 1.5E+02 0.0032 20.1 5.2 22 155-176 66-87 (92)
159 PF13706 PepSY_TM_3: PepSY-ass 33.3 81 0.0017 17.7 3.2 13 184-196 4-16 (37)
160 PF01601 Corona_S2: Coronaviru 33.2 14 0.0003 34.4 -0.1 14 105-118 480-493 (610)
161 PF08858 IDEAL: IDEAL domain; 33.1 93 0.002 17.6 3.4 18 137-154 10-27 (37)
162 PRK14125 cell division suppres 32.7 74 0.0016 22.5 3.6 15 182-196 2-16 (103)
163 PF10031 DUF2273: Small integr 32.6 65 0.0014 19.7 2.9 12 183-194 2-13 (51)
164 TIGR00383 corA magnesium Mg(2+ 32.6 3E+02 0.0065 23.1 16.0 20 125-144 175-194 (318)
165 PF00306 ATP-synt_ab_C: ATP sy 32.5 1.2E+02 0.0026 21.5 4.8 41 141-181 3-45 (113)
166 PRK15041 methyl-accepting chem 32.3 4.1E+02 0.0089 24.5 14.1 10 128-137 123-132 (554)
167 PF06103 DUF948: Bacterial pro 32.0 1.6E+02 0.0035 19.8 8.4 13 127-139 35-47 (90)
168 PHA02673 ORF109 EEV glycoprote 32.0 85 0.0018 24.1 4.0 19 189-207 37-55 (161)
169 PF06422 PDR_CDR: CDR ABC tran 31.6 63 0.0014 22.8 3.1 31 170-200 34-64 (103)
170 PF05393 Hum_adeno_E3A: Human 31.1 43 0.00094 23.0 2.1 9 202-210 46-54 (94)
171 PRK13895 conjugal transfer pro 31.0 2.4E+02 0.0051 21.4 12.6 38 105-143 49-87 (144)
172 PF04799 Fzo_mitofusin: fzo-li 30.5 2.6E+02 0.0057 21.8 7.1 18 129-146 102-119 (171)
173 KOG0994 Extracellular matrix g 30.4 6.4E+02 0.014 26.3 10.4 55 128-182 1664-1718(1758)
174 PF06143 Baculo_11_kDa: Baculo 30.3 1.3E+02 0.0028 20.6 4.2 9 182-190 30-38 (84)
175 PF07352 Phage_Mu_Gam: Bacteri 30.0 2.4E+02 0.0052 21.1 6.7 47 126-172 11-58 (149)
176 PF10392 COG5: Golgi transport 29.9 2.3E+02 0.0049 20.8 7.9 43 140-182 52-94 (132)
177 PTZ00382 Variant-specific surf 29.9 24 0.00051 24.7 0.7 12 200-211 82-93 (96)
178 PHA03386 P10 fibrous body prot 29.8 1.2E+02 0.0025 21.2 4.0 15 125-139 19-33 (94)
179 PRK12430 putative bifunctional 29.7 1E+02 0.0023 27.1 4.6 40 154-193 102-141 (379)
180 PF05399 EVI2A: Ectropic viral 29.4 44 0.00096 27.0 2.2 8 188-195 126-133 (227)
181 KOG0862 Synaptobrevin/VAMP-lik 29.4 3.1E+02 0.0067 22.3 9.5 66 126-193 119-195 (216)
182 PF13980 UPF0370: Uncharacteri 29.3 81 0.0018 20.0 2.9 12 184-195 3-14 (63)
183 PHA02692 hypothetical protein; 29.3 42 0.00091 22.0 1.7 7 134-140 24-30 (70)
184 KOG1690 emp24/gp25L/p24 family 28.9 2E+02 0.0043 23.1 5.7 19 170-188 170-189 (215)
185 KOG2881 Predicted membrane pro 28.6 2.1E+02 0.0045 24.1 6.0 71 111-193 145-218 (294)
186 KOG3637 Vitronectin receptor, 28.4 59 0.0013 32.8 3.3 22 193-214 985-1006(1030)
187 PTZ00046 rifin; Provisional 28.2 1.5E+02 0.0033 26.0 5.4 46 106-152 52-101 (358)
188 PF07439 DUF1515: Protein of u 28.2 2.3E+02 0.005 20.4 9.1 46 127-172 10-59 (112)
189 PF03670 UPF0184: Uncharacteri 27.7 1.3E+02 0.0028 20.5 3.9 30 154-183 41-70 (83)
190 KOG3368 Transport protein part 27.6 2.6E+02 0.0057 20.9 7.8 56 29-86 45-103 (140)
191 PF05823 Gp-FAR-1: Nematode fa 27.4 2.8E+02 0.0061 21.1 7.6 65 108-184 26-93 (154)
192 PF08006 DUF1700: Protein of u 27.2 2.9E+02 0.0063 21.2 9.1 6 110-115 9-14 (181)
193 PF11675 DUF3271: Protein of u 27.2 2.3E+02 0.005 23.4 5.9 50 2-53 30-79 (249)
194 KOG0972 Huntingtin interacting 27.2 4E+02 0.0087 22.9 7.8 16 76-91 246-261 (384)
195 COG3771 Predicted membrane pro 27.0 53 0.0012 22.6 1.9 14 201-214 51-64 (97)
196 PRK10381 LPS O-antigen length 26.9 1E+02 0.0022 27.2 4.2 18 182-199 34-51 (377)
197 PF10372 YojJ: Bacterial membr 26.6 1.9E+02 0.0042 19.0 6.0 47 127-176 19-65 (70)
198 PHA02911 C-type lectin-like pr 26.4 1.7E+02 0.0038 23.5 5.0 24 150-173 2-25 (213)
199 PHA03164 hypothetical protein; 25.7 1.1E+02 0.0024 20.5 3.2 16 191-206 61-76 (88)
200 PF10039 DUF2275: Predicted in 25.7 1.3E+02 0.0029 24.4 4.4 17 182-198 28-44 (218)
201 PF11190 DUF2976: Protein of u 25.6 1.1E+02 0.0023 21.1 3.3 25 181-207 56-80 (87)
202 PLN03223 Polycystin cation cha 25.5 1.4E+02 0.0031 31.1 5.3 62 105-166 1547-1622(1634)
203 PF03030 H_PPase: Inorganic H+ 25.2 2.8E+02 0.0061 26.7 7.0 49 147-206 14-62 (682)
204 PF11166 DUF2951: Protein of u 25.1 2.5E+02 0.0053 19.7 9.5 21 127-147 30-50 (98)
205 PHA02902 putative IMV membrane 25.1 1.2E+02 0.0027 19.5 3.2 13 193-205 8-20 (70)
206 PF07897 DUF1675: Protein of u 24.9 75 0.0016 27.0 2.9 26 48-73 238-263 (284)
207 PF12279 DUF3619: Protein of u 24.5 1.3E+02 0.0029 22.3 3.9 22 181-202 67-88 (131)
208 PF13040 DUF3901: Protein of u 23.9 1.5E+02 0.0033 17.2 3.2 27 138-164 9-35 (40)
209 COG2443 Sss1 Preprotein transl 23.9 2.1E+02 0.0046 18.5 6.3 38 168-205 17-54 (65)
210 KOG3251 Golgi SNAP receptor co 23.8 4E+02 0.0086 21.6 8.7 78 125-207 129-212 (213)
211 PF02937 COX6C: Cytochrome c o 23.7 1.8E+02 0.004 19.2 4.0 25 182-206 11-35 (73)
212 PF04155 Ground-like: Ground-l 23.7 1.2E+02 0.0027 19.8 3.3 12 136-147 10-21 (76)
213 TIGR03007 pepcterm_ChnLen poly 23.7 5.5E+02 0.012 23.2 8.7 33 109-143 261-293 (498)
214 KOG3065 SNAP-25 (synaptosome-a 23.7 3.6E+02 0.0079 22.7 6.7 45 125-170 218-263 (273)
215 PF05399 EVI2A: Ectropic viral 23.5 75 0.0016 25.7 2.5 35 169-203 113-148 (227)
216 COG5547 Small integral membran 23.4 1.3E+02 0.0028 19.0 3.0 14 184-197 3-16 (62)
217 TIGR01478 STEVOR variant surfa 23.3 43 0.00092 28.3 1.1 20 125-144 103-122 (295)
218 PRK06041 flagellar assembly pr 23.3 6.2E+02 0.013 23.6 12.0 49 143-192 148-197 (553)
219 PF05531 NPV_P10: Nucleopolyhe 23.2 1.4E+02 0.0031 19.9 3.4 17 125-141 18-34 (75)
220 PF13908 Shisa: Wnt and FGF in 23.1 38 0.00082 26.3 0.8 18 193-210 80-97 (179)
221 PF00664 ABC_membrane: ABC tra 23.1 3.6E+02 0.0078 20.8 11.4 26 125-150 163-188 (275)
222 PF12725 DUF3810: Protein of u 22.9 1.7E+02 0.0038 25.1 4.9 21 195-216 60-80 (318)
223 TIGR01477 RIFIN variant surfac 22.9 1.9E+02 0.0041 25.4 5.0 44 108-152 57-104 (353)
224 smart00537 DCX Domain in the D 22.7 1.3E+02 0.0027 20.6 3.3 50 22-71 30-83 (89)
225 PF13172 PepSY_TM_1: PepSY-ass 22.6 1.5E+02 0.0032 16.2 3.9 16 181-196 2-17 (34)
226 PF03317 ELF: ELF protein; In 22.5 1E+02 0.0022 24.8 3.0 22 194-215 67-88 (284)
227 KOG2662 Magnesium transporters 22.5 4.3E+02 0.0094 23.7 7.2 9 131-139 296-304 (414)
228 PTZ00370 STEVOR; Provisional 22.4 68 0.0015 27.2 2.2 23 125-147 102-124 (296)
229 PF05803 Chordopox_L2: Chordop 22.4 1.2E+02 0.0026 20.9 3.0 18 182-199 60-77 (87)
230 smart00831 Cation_ATPase_N Cat 22.3 2E+02 0.0044 17.7 4.1 16 184-199 40-55 (64)
231 PHA02681 ORF089 virion membran 22.3 1.1E+02 0.0023 20.9 2.7 7 196-202 14-20 (92)
232 PF11694 DUF3290: Protein of u 22.3 2E+02 0.0043 21.9 4.5 17 184-200 14-30 (149)
233 PF07792 Afi1: Docking domain 22.2 3.5E+02 0.0076 20.4 5.9 49 3-58 2-58 (145)
234 PF05659 RPW8: Arabidopsis bro 22.2 2.6E+02 0.0056 21.1 5.2 49 106-154 31-80 (147)
235 COG5603 TRS20 Subunit of TRAPP 22.1 3.2E+02 0.007 20.0 6.1 39 53-92 71-109 (136)
236 PF14257 DUF4349: Domain of un 22.0 4.5E+02 0.0097 21.6 9.4 13 72-84 103-115 (262)
237 PLN02255 H(+) -translocating i 21.9 1.8E+02 0.004 28.2 5.1 41 162-206 70-110 (765)
238 PRK15321 putative type III sec 21.7 3E+02 0.0065 19.4 5.0 18 106-124 37-54 (120)
239 PRK15471 chain length determin 21.6 1.5E+02 0.0032 25.7 4.1 18 182-199 25-42 (325)
240 KOG3950 Gamma/delta sarcoglyca 21.4 1.6E+02 0.0036 24.4 4.1 32 184-215 32-64 (292)
241 PRK09697 protein secretion pro 21.4 79 0.0017 22.8 2.0 31 182-214 18-51 (139)
242 COG3763 Uncharacterized protei 21.3 1.7E+02 0.0036 19.3 3.3 8 195-202 9-16 (71)
243 PF15188 CCDC-167: Coiled-coil 20.9 2.9E+02 0.0063 18.9 7.1 33 158-194 41-73 (85)
244 PHA02947 S-S bond formation pa 20.8 96 0.0021 25.1 2.6 63 25-92 11-78 (215)
245 COG4499 Predicted membrane pro 20.7 1.3E+02 0.0029 26.7 3.6 30 28-57 40-69 (434)
246 PRK15348 type III secretion sy 20.6 1.9E+02 0.004 24.1 4.4 27 176-202 209-235 (249)
247 PRK10884 SH3 domain-containing 20.5 4.6E+02 0.0099 21.1 11.0 8 160-167 146-153 (206)
248 COG1983 PspC Putative stress-r 20.5 1.9E+02 0.0041 19.0 3.5 11 199-209 49-59 (70)
249 PF05659 RPW8: Arabidopsis bro 20.4 2.9E+02 0.0062 20.9 5.1 17 125-141 66-82 (147)
250 PF08702 Fib_alpha: Fibrinogen 20.3 3.9E+02 0.0084 20.2 7.2 26 65-90 7-37 (146)
251 KOG0812 SNARE protein SED5/Syn 20.3 5.5E+02 0.012 21.9 8.5 40 168-208 266-308 (311)
252 PF10853 DUF2650: Protein of u 20.2 1.3E+02 0.0029 17.2 2.4 18 182-199 18-35 (38)
253 PF15145 DUF4577: Domain of un 20.1 1.2E+02 0.0026 21.9 2.7 21 190-210 67-87 (128)
254 PF13974 YebO: YebO-like prote 20.0 73 0.0016 21.6 1.5 10 199-208 8-17 (80)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-69 Score=412.87 Aligned_cols=217 Identities=47% Similarity=0.867 Sum_probs=212.3
Q ss_pred CcceEEEeEeCCeEEeeecCCCCCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHH
Q 027677 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (220)
Q Consensus 1 M~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 80 (220)
|+|+|+.||||++|||||++.+|||..+|.++|+|+|++++++.+|+.|+|+|||+.+||++|+|++|.+.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 89999999999999999999999999999999999997668899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q 027677 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVD 160 (220)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ 160 (220)
++|++.|.+.|+....++.+|+++++|++.|++.|..|.++|.-|++.+++.|++|+|++|.+|||++++|||+||.|++
T Consensus 81 e~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 027677 161 KTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLAFVCHGLTLPT 217 (220)
Q Consensus 161 ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~~~c~gf~~~~ 217 (220)
||++|+.+|..|++++++++|+|||+|.|+++++++++++++|+|++..||||++|+
T Consensus 161 KTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~s 217 (217)
T KOG0859|consen 161 KTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCPS 217 (217)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999997763
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-34 Score=225.77 Aligned_cols=191 Identities=24% Similarity=0.494 Sum_probs=171.8
Q ss_pred ceEEEeEeC--CeEEeeecC---CCCC----HHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCc
Q 027677 3 ILFSLVARG--SVVLAECSA---TATN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR 73 (220)
Q Consensus 3 i~Ya~Iar~--~~iLae~~~---~~~~----~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~ 73 (220)
|++++|+|. +.|||.-.+ .+|+ ..+.|+.+++++.+.+++|.+++.|+|.|||+++++++|+++||.+||+
T Consensus 2 i~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP~ 81 (216)
T KOG0862|consen 2 ILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYPR 81 (216)
T ss_pred ceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCcH
Confidence 789999995 699997776 2233 2679999999999666999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhchhhhh--cccCCCchhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 74 RIPFAFLEDIHQRFVKTYGRAVLS--AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 74 ~~af~fL~~i~~~f~~~~~~~~~~--~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
++||.||+++.++|.+.|+....+ ++||++ .+|++.|++.-++||++...+.+.++.+++.+|+.+|.+||+.++.|
T Consensus 82 kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~r 160 (216)
T KOG0862|consen 82 KLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQR 160 (216)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 999999999999999999866543 589988 59999999999999765567999999999999999999999999999
Q ss_pred hhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 027677 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAL 194 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii 194 (220)
||.|+.|..++.+|+..|+.++++|+.++++..|.+|.-++.+
T Consensus 161 g~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~ 203 (216)
T KOG0862|consen 161 GEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVF 203 (216)
T ss_pred chHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998844433
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-32 Score=202.97 Aligned_cols=175 Identities=24% Similarity=0.382 Sum_probs=145.7
Q ss_pred CcceEEEeEeCC----eEEeeecC------CC-CC---H-HHHHHHHhccCCCCCCCceEEEeCCEEEEEE-EeCCeEEE
Q 027677 1 MAILFSLVARGS----VVLAECSA------TA-TN---A-SAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTVL 64 (220)
Q Consensus 1 M~i~Ya~Iar~~----~iLae~~~------~~-~~---~-~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l-~~~~~~~~ 64 (220)
|.|++..|-+.+ .+|+.-++ +. ++ | ..+++.+.+|.++ ..|++++++.|..|.. ..||++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~--g~rqsvk~~~Y~~h~yvrndgL~~V 78 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP--GQRQSVKHEEYLVHVYVRNDGLCGV 78 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc--ccccccccceeEEEEEEecCCeeEE
Confidence 778888888762 55554443 22 33 2 3588999999988 9999999999999955 46699999
Q ss_pred EEEcCCcCcchHHHHHHHHHHHHHhhhc-hhhhhcccCCCchhhhHHHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHH
Q 027677 65 CMADDTAGRRIPFAFLEDIHQRFVKTYG-RAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMI 142 (220)
Q Consensus 65 ~itd~~~~~~~af~fL~~i~~~f~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~ 142 (220)
+++|.+||.|+||.+|.++.++|....+ ..|. ....+- .+| |.|..++.+| +||.. |+|.++|+++||+|.||.
T Consensus 79 ~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~-~~~~~~-~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLh 154 (198)
T KOG0861|consen 79 LIADDEYPVRVAFTLLNKVLDEFTTKVPATQWP-VGETAD-LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILH 154 (198)
T ss_pred EEecCcCchhHHHHHHHHHHHHHhhcCcccccC-cCCCcC-CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976554 4454 322222 244 7899999999 78865 999999999999999999
Q ss_pred HhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027677 143 ENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (220)
Q Consensus 143 ~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
++|+.+|+|||+||+|++||++|+.+|+.|.++|++.++
T Consensus 155 kTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 155 KTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred HHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999998764
No 4
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=180.33 Aligned_cols=91 Identities=27% Similarity=0.701 Sum_probs=85.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 027677 120 DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILIL 199 (220)
Q Consensus 120 ~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~ 199 (220)
+++.++++.++|+|+++|.+||++|++|+|||||+|+.|+++|++|+.+|.+|+++|.++||+|||+|.|+.++++++++
T Consensus 24 ~~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~ 103 (116)
T KOG0860|consen 24 NNTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVII 103 (116)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027677 200 VIVYVVLAFVC 210 (220)
Q Consensus 200 ~ii~~i~~~~c 210 (220)
+++++|++++-
T Consensus 104 i~l~iiii~~~ 114 (116)
T KOG0860|consen 104 ILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHh
Confidence 88888877664
No 5
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=8.5e-29 Score=173.70 Aligned_cols=88 Identities=39% Similarity=0.865 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027677 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVY 203 (220)
Q Consensus 124 ~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~ 203 (220)
+|++.++++++++|+++|.+|++++++|||+||+|+++|++|+.+|..|+++|++++|++||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 027677 204 VVLAFVCH 211 (220)
Q Consensus 204 ~i~~~~c~ 211 (220)
+|++++||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999995
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.92 E-value=2.8e-24 Score=166.40 Aligned_cols=181 Identities=20% Similarity=0.382 Sum_probs=144.5
Q ss_pred CcceEEEeEeCC--eEEeeecC-CCCCH--HHHHHHHhccCCCCCCCceEEEeCCEEEEEEEe-CCeEEEEEEcCCcCcc
Q 027677 1 MAILFSLVARGS--VVLAECSA-TATNA--SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRT-DGLTVLCMADDTAGRR 74 (220)
Q Consensus 1 M~i~Ya~Iar~~--~iLae~~~-~~~~~--~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~-~~~~~~~itd~~~~~~ 74 (220)
|+++|..+.++. .++++-.+ .+..| ...+..+|.++.+...++..++.++|.|||... +|++|+|+++++||.+
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~ 80 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK 80 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence 567777777774 44444333 22333 457888888887666778899999999998875 5999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhchhh-hhc-ccCCCchhhhHHHHHHhhhhcCCc-chhHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 75 IPFAFLEDIHQRFVKTYGRAV-LSA-QAYGMNDEFSRVLSQQMEYYSDDP-NADRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 75 ~af~fL~~i~~~f~~~~~~~~-~~~-~~~~~~~~f~~~l~~~~~~yn~~~-~~dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
.|+..++++..+|........ .+. .++. ..+|++.+++ .| ++| .+|++.+++.++++++.+|.+||++++.|
T Consensus 81 la~~~~~~~~~~~~~s~~~~~~~d~~~~~~-~~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R 155 (190)
T COG5143 81 LAYGYLNSIATEFLKSSALEQLIDDTVGIM-RVNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYR 155 (190)
T ss_pred hhhHHHHhhccHhhhhhhHhhcccCccchh-hhhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999887665433 222 2222 2355666555 28 455 45999999999999999999999999999
Q ss_pred hhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 027677 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWR 186 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~ 186 (220)
||+|+.|+++|..|..+|+.|+++|++.++.+||+
T Consensus 156 ~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 156 DEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 99999999999999999999999999999999984
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.80 E-value=5.6e-19 Score=122.18 Aligned_cols=81 Identities=43% Similarity=0.838 Sum_probs=71.8
Q ss_pred HHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc-hhhhhcccCCCchh
Q 027677 28 IARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG-RAVLSAQAYGMNDE 106 (220)
Q Consensus 28 ~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~-~~~~~~~~~~~~~~ 106 (220)
+|+++|++++++.++|.+++.|+|.|||+++||++|+|+||++||+++||.||++|+++|.++|+ +.+.++.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 58999999995445899999999999999999999999999999999999999999999999998 56677788988 78
Q ss_pred hhH
Q 027677 107 FSR 109 (220)
Q Consensus 107 f~~ 109 (220)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 875
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00025 Score=55.66 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVV 205 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i 205 (220)
+...++...++++.+|..|+++.++||++...+.|+.++|..+++.+++-+.+...++|||.-|+=..++....+..-.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999887777666544333
No 9
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.96 E-value=0.038 Score=38.54 Aligned_cols=75 Identities=15% Similarity=0.375 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHH----------HHhHHHHHHHHHHHHhHHHHHHHHHH
Q 027677 129 RIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRF----------RKQARRFRSTVWWRNVKLTVALIILI 198 (220)
Q Consensus 129 ~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f----------~~~a~~l~r~~~~~~~k~~~ii~~vv 198 (220)
.+-+.+..++..|.+.+++- ...++.|.+.|+.|......| ++--+++.|+.|.-++-+++.+++.+
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666666666654432 345555666666665443333 23334567777777776776666666
Q ss_pred HHHHHHHH
Q 027677 199 LVIVYVVL 206 (220)
Q Consensus 199 ~~ii~~i~ 206 (220)
+.++||++
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 66666664
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.78 E-value=0.041 Score=38.04 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYV 204 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~ 204 (220)
+.+..++..+.+.-+.+.++=+++=+=.++-+.|.+.|+....+|...++.... ..++-+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~----~~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWW----RNYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhHHhhhhhhhhHHHH
Confidence 445566666666666666666665555667777888888888888888765532 2234445555555555555544
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.025 Score=47.23 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh----hHHHHHHhHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG----NTFRFRKQAR 177 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~----~s~~f~~~a~ 177 (220)
..+.+++.++.||.+|+.+==.-+=+-|+.+|.+++.-++.+. .+...++.++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999988767777999999999888877664 4444544443
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.047 Score=46.35 Aligned_cols=71 Identities=13% Similarity=0.328 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhh---hhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTAN---MQGNTFRFRKQARRFRSTVWWRNVKLTVALIIL 197 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~---L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~v 197 (220)
+-+.+++..+.|+.++-.+=--.+...||.+|.++...++ -..++..=-++|.+..++.. ++|+++|++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR--K~k~i~ii~~i 279 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR--KWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hceeeeehHHH
Confidence 5567777888888887766556777888888887665544 33444445556665555542 34444444333
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.05 E-value=0.074 Score=43.09 Aligned_cols=76 Identities=13% Similarity=0.261 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh---hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG---NTFRFRKQARRFRSTVWWRNVKLTVALIILILV 200 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~---~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ 200 (220)
..+.+++.-+.|+.+...+=-+.+.++.|.+|.+....++-.. ++..-..+|.+-.|+...++++-++|+++++|+
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence 3355666666666666655557788999999988877766543 333333444444555544455555554444443
No 14
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=95.07 E-value=0.081 Score=44.46 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=42.6
Q ss_pred HHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeC--CeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhchh
Q 027677 26 SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA 94 (220)
Q Consensus 26 ~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~--~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~ 94 (220)
..+++.+|=.=. ....+|++++|.+.|...| +++||+|-..-..-..+=.||+.|+..|...|+..
T Consensus 5 n~LI~~vlleeR---~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~ 72 (279)
T PF04086_consen 5 NALIRDVLLEER---SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ 72 (279)
T ss_dssp HHHHHHTGGG----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhheeec---cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence 456666653311 3445689999999887755 79999999999988888999999999999999755
No 15
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.34 E-value=1.2 Score=30.98 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhh
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKT 162 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks 162 (220)
.|..+.+.+.+.-+-...|++.+.+.-+.|..+.+.=
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~ 45 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEY 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444555555555555554444433
No 16
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=93.00 E-value=2.3 Score=34.43 Aligned_cols=95 Identities=7% Similarity=0.185 Sum_probs=42.5
Q ss_pred hhHHHHHHhhhhcCCc---chhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 107 FSRVLSQQMEYYSDDP---NADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 107 f~~~l~~~~~~yn~~~---~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
....|++..+.|++.. .+|=+..++.++++|.. +++...+.++ +..+.+..+++....++-....+
T Consensus 76 I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~t---de~k~~~~~e--i~k~r~e~~~ml~evK~~~E~y~------ 144 (230)
T PF03904_consen 76 IKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDT---DELKNIAQNE--IKKVREENKSMLQEVKQSHEKYQ------ 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3445555556663221 22555666666666543 4555444443 33333333333332222111111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhCC
Q 027677 184 WWRNVKLTVALIILILVIVYVVLAFVCHG 212 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~~ii~~i~~~~c~g 212 (220)
-|.+.-...+.+..+++++|+.++.+-|+
T Consensus 145 k~~k~~~~gi~aml~Vf~LF~lvmt~g~d 173 (230)
T PF03904_consen 145 KRQKSMYKGIGAMLFVFMLFALVMTIGSD 173 (230)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 11223334455555556666666655555
No 17
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=92.85 E-value=1.2 Score=33.10 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=35.8
Q ss_pred HHHhccCCCCCCC---ceEEE-eCCEEEEEEE---eCCeEEEEEEcCCcCcchHHHHHHHHHH
Q 027677 30 RQILDKIPGNNDS---HVSYS-QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (220)
Q Consensus 30 ~~il~ki~~~~~~---k~~~~-~~~~~~~~l~---~~~~~~~~itd~~~~~~~af~fL~~i~~ 85 (220)
..+++++-|-... |++.. .|||-.+|.. +++-+++|.+..+.|+-++...|.|++.
T Consensus 48 dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 48 DMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred hccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 3346776643333 33333 5899999987 5689999999999999999999999874
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=3.2 Score=30.09 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=25.3
Q ss_pred hHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027677 144 NIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (220)
Q Consensus 144 ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
.++.+- +|-|.|.+-|+.....|...++.-=..+-+|+
T Consensus 58 kL~~L~---drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 58 KLDELD---DRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 45566778899999999999866544444443
No 19
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=91.28 E-value=2.9 Score=34.94 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHh----hhhhhhhHHHHHHhHHHHHHHHHHHHh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDK----TANMQGNTFRFRKQARRFRSTVWWRNV 188 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~k----s~~L~~~s~~f~~~a~~l~r~~~~~~~ 188 (220)
..+..+..-+.|+..|..+==.-+.+-|+-+|.+.-. +.+|+..++...+.-..-||.-.|+-|
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~ 262 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhh
Confidence 3455666777777777777667788999888876544 445555666666655555555444444
No 20
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=91.13 E-value=3.5 Score=31.09 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCceEEEeCCEEEEEE-EeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhh-chhhhhcccCCCchhhhHHHHHHhh
Q 027677 41 DSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLSAQAYGMNDEFSRVLSQQME 116 (220)
Q Consensus 41 ~~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~ 116 (220)
.+..+++.+.|..|+. ...|+-|+++||++.+. ..-.+++.+.+.|..-. .+..-...-+--+..|+..|+++++
T Consensus 65 ~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~ 141 (142)
T PF04099_consen 65 SGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVK 141 (142)
T ss_dssp -SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHH
T ss_pred eeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHh
Confidence 5677889999999976 47999999999999863 44556666666554321 1111111111113467777766654
No 21
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=90.74 E-value=3.9 Score=33.82 Aligned_cols=23 Identities=9% Similarity=0.356 Sum_probs=11.2
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHH
Q 027677 160 DKTANMQGNTFRFRKQARRFRST 182 (220)
Q Consensus 160 ~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
.-.+.+..+...+...+.+++.+
T Consensus 199 ~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 199 RTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555443
No 22
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=90.16 E-value=2.9 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=21.1
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
+|||.+++|-|. .+|.-|++..+++=|..
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 467777777776 56778888888887663
No 23
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=89.98 E-value=4.4 Score=39.43 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=7.0
Q ss_pred HHHHHHHHHhCCCC
Q 027677 201 IVYVVLAFVCHGLT 214 (220)
Q Consensus 201 ii~~i~~~~c~gf~ 214 (220)
+++.++...||..+
T Consensus 428 v~~~~lGLl~G~~G 441 (806)
T PF05478_consen 428 VLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHhhcc
Confidence 34444555665544
No 24
>PTZ00478 Sec superfamily; Provisional
Probab=89.85 E-value=1.5 Score=29.68 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027677 148 VLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVL 206 (220)
Q Consensus 148 ~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~ 206 (220)
+.+..+.++.+.+...+.-.+|.+|-++.+|=.|+-+.+-.+...+..+++-++-|+|=
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~IK 67 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIK 67 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556667788888888888899999999988888888888887776666666656553
No 25
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=89.72 E-value=3.4 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=21.5
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
+|||.+++|-|. .+|.-|++..+++=|..
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 467777777776 56788888888887663
No 26
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=88.91 E-value=3 Score=30.97 Aligned_cols=110 Identities=11% Similarity=0.133 Sum_probs=57.1
Q ss_pred EeEeCCeEEeeecCC--CCC--------HHHHH---HHHhcc-CCC---CCCCceEEEeCCEE-EEEEEeCCeEEEEEEc
Q 027677 7 LVARGSVVLAECSAT--ATN--------ASAIA---RQILDK-IPG---NNDSHVSYSQDRYI-FHVKRTDGLTVLCMAD 68 (220)
Q Consensus 7 ~Iar~~~iLae~~~~--~~~--------~~~~a---~~il~k-i~~---~~~~k~~~~~~~~~-~~~l~~~~~~~~~itd 68 (220)
.|++++.+|.+++.. ++. ++.++ ..+++. +.. ...-+..+..+++. |.|+...++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 367788888777643 222 23232 333332 211 11223556677766 6698888999998888
Q ss_pred ---CCcCcchHHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhh
Q 027677 69 ---DTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQME 116 (220)
Q Consensus 69 ---~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~ 116 (220)
........-.|..++++.|.+..-+........=....|+..++.+.+
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIKSPKFDSRVRALAK 131 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCHHHHHHHHHHhc
Confidence 455566678899999988876443222110000001367777776665
No 27
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=88.75 E-value=3.3 Score=33.84 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=19.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILILVIVYVVLAFV 209 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~~ii~~i~~~~ 209 (220)
+-.|+-|.+.++++++|++++|-++.++
T Consensus 248 kkki~c~gI~~iii~viv~vv~~v~~~v 275 (280)
T COG5074 248 KKKIRCYGICFIIIIVIVVVVFKVVPFV 275 (280)
T ss_pred hcceehhhhHHHHHHHHHHHHhcccchh
Confidence 4456778888888888887776555444
No 28
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.74 E-value=5 Score=26.36 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=23.8
Q ss_pred hhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027677 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVV 205 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i 205 (220)
.++++.|+..++.+.........+-.+++....| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444444433322 22355555555555554
No 29
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=88.16 E-value=5.5 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=21.7
Q ss_pred hhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
.+|||.+++|-|. .+|.-+++..+++=|..
T Consensus 18 ~~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 18 MKRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 4567777777776 56778888888887663
No 30
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=14 Score=31.96 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=70.8
Q ss_pred eEEEeEeCCeEEeeecCC--CCCHHHHHH-HHhccCCCCCCCce-EEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHH
Q 027677 4 LFSLVARGSVVLAECSAT--ATNASAIAR-QILDKIPGNNDSHV-SYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAF 79 (220)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~--~~~~~~~a~-~il~ki~~~~~~k~-~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~f 79 (220)
+|..=.||+++++-.=.. .++..++-+ .++.. .+.|. ..+.++-+|||...+++-.++||..+......|.|
T Consensus 5 lfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n----~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eF 80 (446)
T KOG0938|consen 5 LFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN----LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEF 80 (446)
T ss_pred EEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc----cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHH
Confidence 344455777777754322 244433332 22222 23343 56788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcch
Q 027677 80 LEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNA 124 (220)
Q Consensus 80 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~ 124 (220)
|.++.+.+..-++...+.+....+.--| .-|.++|+ | --|++
T Consensus 81 l~kl~avm~aYfgk~~Eeaiknnf~lI~-ElLDemld-~-G~pqn 122 (446)
T KOG0938|consen 81 LYKLDAVMNAYFGKDREEAIKNNFVLIY-ELLDEMLD-F-GIPQN 122 (446)
T ss_pred HHHHHHHHHHHhcccchhhhhhceEeHH-HHHHHHHh-c-CCCcc
Confidence 9999988876666444444444333222 23444454 4 33544
No 31
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=0.51 Score=46.68 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=38.0
Q ss_pred HHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q 027677 142 IENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRN 187 (220)
Q Consensus 142 ~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~ 187 (220)
..--+.+.+|||+|+.++++|++|++++.+|...|.++.-++-.|.
T Consensus 944 ~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk 989 (993)
T KOG1983|consen 944 SGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKK 989 (993)
T ss_pred hhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhh
Confidence 3345678899999999999999999999999999998865554433
No 32
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=7.1 Score=35.52 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=63.9
Q ss_pred eEEEeEeCCeEEeeecCCCCCH----HHHHHHHhccCCCCCCCceEEEeCCEEEEEEEe--CCeEEEEEEcCCcCcchHH
Q 027677 4 LFSLVARGSVVLAECSATATNA----SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRT--DGLTVLCMADDTAGRRIPF 77 (220)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~~~----~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~--~~~~~~~itd~~~~~~~af 77 (220)
.++.+.+|+.+|..|.....+| ..+++.+|-.=. .+--.++.+.|+.-|-.+ -+++|+|+-.+-..-..+-
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er---~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~ 80 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER---GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVD 80 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh---cCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHH
Confidence 5788899999999999865555 445555543211 111227788888877654 5799999998888888888
Q ss_pred HHHHHHHHHHHhhhc
Q 027677 78 AFLEDIHQRFVKTYG 92 (220)
Q Consensus 78 ~fL~~i~~~f~~~~~ 92 (220)
.||+++.+.|...|.
T Consensus 81 ~ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 81 KLLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998885
No 33
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=86.52 E-value=4.1 Score=26.10 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 156 ELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 156 ~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
+.+.+...++-.++.++-+.+++=.|+..++..|...+..+++-++-|+|=+
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677788888888888888888888877766666665565543
No 34
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.00 E-value=31 Score=30.97 Aligned_cols=48 Identities=6% Similarity=0.142 Sum_probs=32.0
Q ss_pred eEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHH---HHHHHHHHHHHhhh
Q 027677 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPF---AFLEDIHQRFVKTY 91 (220)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af---~fL~~i~~~f~~~~ 91 (220)
..++.+++.|-|-.-|.+-++.||.+.+..-... .+|.++-.+|...+
T Consensus 47 T~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl~TL~Lfskvipey~~sl 97 (512)
T KOG2635|consen 47 TFVETDSVRYVYQPLDNLYIVLITTKQSNILEDLETLRLFSKVIPEYCSSL 97 (512)
T ss_pred cEEecccEEEEEEecccEEEEEEeccccchhhHHHHHHHHHHhchhhhhhh
Confidence 4556678888888889999999999987654433 33344444444333
No 35
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=81.74 E-value=3.4 Score=28.77 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 027677 176 ARRFRSTVWWRNV 188 (220)
Q Consensus 176 a~~l~r~~~~~~~ 188 (220)
.|+.||+..|++.
T Consensus 5 ~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 5 LKKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 36
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.26 E-value=21 Score=29.64 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=36.3
Q ss_pred hhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHH
Q 027677 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRF 172 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f 172 (220)
...+.+++.+..|+ +||..++.-+++..+...+--+.--.+..+++.+..|-+.++..-..+
T Consensus 178 ~l~~~i~~~L~~~~-----~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~ 239 (264)
T PF06008_consen 178 SLAEAIRDDLNDYN-----AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEV 239 (264)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666663 566667766666666666554444555556666666666555443333
No 37
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.12 E-value=27 Score=28.17 Aligned_cols=19 Identities=16% Similarity=0.492 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIE 143 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ 143 (220)
+.|...-+.+.+-+.|+.+
T Consensus 128 erLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 128 ERLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3444444555555555554
No 38
>PHA02557 22 prohead core protein; Provisional
Probab=81.08 E-value=17 Score=30.28 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcC-Ccch--hHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 027677 76 PFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD-DPNA--DRINRIKGEMSQVRNVMIENIDKVLERG 152 (220)
Q Consensus 76 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~-~~~~--dkl~~i~~~v~~v~~im~~ni~~~l~Rg 152 (220)
+-+||+.+.++|....+-.........+..+|-.-|+.+....|= -|.. |-+..+..+|++.+.-...-++...+..
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999876554443344455666777778887766532 2433 7888889999988888887777777766
Q ss_pred hhhHH------HHHhhhhhhh
Q 027677 153 DRLEL------LVDKTANMQG 167 (220)
Q Consensus 153 e~l~~------L~~ks~~L~~ 167 (220)
+.++. +.+.|.+|.+
T Consensus 169 e~i~~~~r~~i~~e~t~gLtd 189 (271)
T PHA02557 169 EYINEVKREVILSEVTKDLTE 189 (271)
T ss_pred HHHHHHHHHHHHHHHHcchhH
Confidence 66654 4455666654
No 39
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.70 E-value=35 Score=29.13 Aligned_cols=43 Identities=28% Similarity=0.500 Sum_probs=23.5
Q ss_pred hHHHHHHh-HHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 027677 168 NTFRFRKQ-ARRFRSTV-WWRNVKLTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 168 ~s~~f~~~-a~~l~r~~-~~~~~k~~~ii~~vv~~ii~~i~~~~c 210 (220)
+|..|-.+ +-.+++.. .-++-+-|-++++++++++.+|++.+-
T Consensus 245 ~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i 289 (297)
T KOG0810|consen 245 NAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVI 289 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhh
Confidence 56666554 33444433 334556667777766666665554433
No 40
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=80.54 E-value=16 Score=28.48 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQ 175 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~ 175 (220)
.-...+..++++++.-|.+.|+++-..=++||.+..++..|...+..+...
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335678899999999999999999888888888888877777666665543
No 41
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=80.34 E-value=23 Score=31.80 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=23.5
Q ss_pred chhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHH
Q 027677 104 NDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENID 146 (220)
Q Consensus 104 ~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~ 146 (220)
|.+|...+.+..+.. ++ .++-+..+.++++.+...+..+++
T Consensus 104 N~~~h~gV~~t~~si-~~-an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 104 NDETHDGVVQLTYSL-RN-ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred cHHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445666666665554 21 335556666666666666655554
No 42
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=79.46 E-value=25 Score=26.66 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=36.5
Q ss_pred EcCCcCcchHHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcchhHHH-HHHHHHHHHHHHHHHhH
Q 027677 67 ADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRIN-RIKGEMSQVRNVMIENI 145 (220)
Q Consensus 67 td~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~-~i~~~v~~v~~im~~ni 145 (220)
-+++-|--+.....+.+.++..+.... ....|...+.....++. +....|-. -+..-+...++-|.+.+
T Consensus 20 L~~DDPILil~TiNe~ll~~~~~aq~~---------~l~~fk~elE~~~~~w~-~dak~kAEkiL~aal~~ske~m~~~l 89 (144)
T PF11657_consen 20 LSRDDPILILQTINERLLEDSAKAQQE---------QLDQFKEELEEIASRWG-EDAKEKAEKILNAALAASKEAMNKIL 89 (144)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666665555554432211 12478888888888873 33333332 23334444555555444
Q ss_pred H
Q 027677 146 D 146 (220)
Q Consensus 146 ~ 146 (220)
.
T Consensus 90 ~ 90 (144)
T PF11657_consen 90 Q 90 (144)
T ss_pred H
Confidence 4
No 43
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.36 E-value=32 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
.-+...|+++-+=++..-++|.+-+.|
T Consensus 137 ~~~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 137 QEIVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 44
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=77.83 E-value=0.84 Score=34.61 Aligned_cols=31 Identities=10% Similarity=0.422 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 027677 177 RRFRSTVWWRNVKLTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 177 ~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~~~c 210 (220)
.+.||.. -+|+..+|+++||.++.+|++.+|
T Consensus 125 ae~kr~K---~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 125 AELKRSK---VCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHheEEEEEEEE
Confidence 3444443 357777888888888888888777
No 45
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=77.69 E-value=26 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=42.7
Q ss_pred ceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 43 HVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 43 k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
--.+.++++.+-|..-+++.|+++++.+...-....||+.+.+.+..-++
T Consensus 47 ~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 47 SPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp TSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 45678899999999899999999999999988889999888887776554
No 46
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.75 E-value=45 Score=28.22 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhh---hhHHHHHhhhhhhhhH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGD---RLELLVDKTANMQGNT 169 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge---~l~~L~~ks~~L~~~s 169 (220)
..+..++..+.|+=+|+.+=-..+=+.|| +||+.++.++-.-+.|
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA 274 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGA 274 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHH
Confidence 45566777777877777765555555665 4555555555433333
No 47
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.13 E-value=16 Score=30.99 Aligned_cols=34 Identities=6% Similarity=0.276 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELL 158 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L 158 (220)
.-+.++-+-+.|+..|+.+==..+++.|--+|.+
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRI 251 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRI 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhe
Confidence 4467778888888888888778888999666654
No 48
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=76.09 E-value=19 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.3
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHhHHHHHHH
Q 027677 153 DRLELLVDKTANMQGNTFRFRKQARRFRST 182 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
++||.+++|-+. ..+.-|++-.+++-|.
T Consensus 22 kRLdeieekvef--~~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 22 KRLDEIEEKVEF--VNGEVYQRIGKKIGRD 49 (75)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHhcch
Confidence 456677777765 4566787778877665
No 49
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.05 E-value=11 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=34.1
Q ss_pred hhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 154 RLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
+++.+.+-+.+...+|.+|.++.++=-|+-+-+-.+-..+-.+++-++-|+|=+
T Consensus 3 ~~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~vKL 56 (67)
T KOG3498|consen 3 QVDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFVKL 56 (67)
T ss_pred hHHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777777777777777766666666655555555555433
No 50
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.24 E-value=13 Score=26.98 Aligned_cols=19 Identities=0% Similarity=0.340 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIE 143 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ 143 (220)
..+..++++|.-.|..-.+
T Consensus 36 e~~e~L~~kV~aLKsLs~d 54 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLD 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456667777766665443
No 51
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=74.99 E-value=8.1 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 163 ANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 163 ~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
.+.-.++.++-+.+++=.|+..++..+...+..+++-++-|+|=+
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikl 51 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKI 51 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888888888888888877766666665555543
No 52
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=72.29 E-value=7.4 Score=29.38 Aligned_cols=25 Identities=28% Similarity=0.717 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhC
Q 027677 187 NVKLTVALIILILVIVYVVLAFVCH 211 (220)
Q Consensus 187 ~~k~~~ii~~vv~~ii~~i~~~~c~ 211 (220)
.+..+++++++|.++++++++..|.
T Consensus 29 thm~tILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666773
No 53
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=71.17 E-value=55 Score=26.67 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=11.3
Q ss_pred HHHhhhhhhhhHHHHHHhHH
Q 027677 158 LVDKTANMQGNTFRFRKQAR 177 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~~~a~ 177 (220)
+.+.++.|...|...++-++
T Consensus 192 ~D~N~~~L~~~Serve~y~k 211 (244)
T KOG2678|consen 192 IDVNSQGLMDVSERVEKYDK 211 (244)
T ss_pred HhHHHHHHHhhhHHHHHHHH
Confidence 33455566666666665554
No 54
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=70.46 E-value=13 Score=23.67 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027677 188 VKLTVALIILILVIVYV 204 (220)
Q Consensus 188 ~k~~~ii~~vv~~ii~~ 204 (220)
.++++.+++++++++++
T Consensus 38 ~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 38 TQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444333333333333
No 55
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=57 Score=26.37 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=6.0
Q ss_pred HHHHHHHhHHHHHHHH
Q 027677 181 STVWWRNVKLTVALII 196 (220)
Q Consensus 181 r~~~~~~~k~~~ii~~ 196 (220)
|++...++-+++||++
T Consensus 191 RR~~~nk~~~~aii~~ 206 (220)
T KOG1666|consen 191 RRLIRNKFTLTAIIAL 206 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334333333333333
No 56
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=69.28 E-value=12 Score=26.01 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027677 178 RFRSTVWWRNVKLTVALIILILVIVYV 204 (220)
Q Consensus 178 ~l~r~~~~~~~k~~~ii~~vv~~ii~~ 204 (220)
-+||..|+..++..++..++ ++++++
T Consensus 4 i~kK~K~k~~l~~~~isi~~-~lvi~~ 29 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIIS-ALVIFI 29 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhHH
Confidence 35666777777777655444 433333
No 57
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=68.18 E-value=21 Score=32.80 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCC
Q 027677 199 LVIVYVVLAFVCHGLTLPTCLQ 220 (220)
Q Consensus 199 ~~ii~~i~~~~c~gf~~~~C~~ 220 (220)
++||+.+++++-.|+-|++|.+
T Consensus 486 liVLLAaLlSfLtg~~fq~~vd 507 (538)
T PF05781_consen 486 LIVLLAALLSFLTGLFFQRCVD 507 (538)
T ss_pred HHHHHHHHHHHHhcccccchhc
Confidence 3355566666777888999975
No 58
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=67.64 E-value=56 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 027677 78 AFLEDIHQRFV 88 (220)
Q Consensus 78 ~fL~~i~~~f~ 88 (220)
.||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 57777776654
No 59
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.01 E-value=82 Score=27.02 Aligned_cols=61 Identities=15% Similarity=0.333 Sum_probs=34.4
Q ss_pred hhHHHHHHhhhhcCCcchhHHHHHHHHH---HHHHHHHHHhHHHHHHhhhhhHHHHH----hhhhhhhhHHHH
Q 027677 107 FSRVLSQQMEYYSDDPNADRINRIKGEM---SQVRNVMIENIDKVLERGDRLELLVD----KTANMQGNTFRF 172 (220)
Q Consensus 107 f~~~l~~~~~~yn~~~~~dkl~~i~~~v---~~v~~im~~ni~~~l~Rge~l~~L~~----ks~~L~~~s~~f 172 (220)
|....+.+...+| ..-|.+.+++..+ ...+++|. +++++...+||.+.+ -+++++..-...
T Consensus 216 ~E~En~~l~~~~n--~~~devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~~~~~teNIk~gNe~i 283 (316)
T KOG3894|consen 216 LETENQRLLNELN--ELLDEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDLQSGATENIKDGNEEI 283 (316)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 4555555555553 1225555555544 44455555 577788888888777 344455444444
No 60
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=66.85 E-value=50 Score=29.54 Aligned_cols=86 Identities=7% Similarity=0.055 Sum_probs=59.0
Q ss_pred EeEeCCeEEeeecCCC---CCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHH
Q 027677 7 LVARGSVVLAECSATA---TNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDI 83 (220)
Q Consensus 7 ~Iar~~~iLae~~~~~---~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i 83 (220)
..+..++|+...--.+ ..+..+.+.++.-.....+.-..++.|+..|.|+..+.+.++||+..+-|......-|+-+
T Consensus 16 IlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~l 95 (415)
T PF03164_consen 16 ILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYL 95 (415)
T ss_pred EECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHH
Confidence 4444556665433211 1234455666554443346667888899999999999999999999998887777888888
Q ss_pred HHHHHhhhc
Q 027677 84 HQRFVKTYG 92 (220)
Q Consensus 84 ~~~f~~~~~ 92 (220)
........+
T Consensus 96 y~qils~lt 104 (415)
T PF03164_consen 96 YSQILSILT 104 (415)
T ss_pred HHHHHHhcc
Confidence 777665544
No 61
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=63.38 E-value=36 Score=21.59 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027677 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (220)
Q Consensus 124 ~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
.+.|.....-++++.++-.+.+..+-.-++.|....++..++...-..-.+--+++.|
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 3677888888999999888888999888999988888888777655555444444444
No 62
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=62.46 E-value=17 Score=28.65 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHH--hHHHHHHhhhhhHHHHHhhhhh
Q 027677 130 IKGEMSQVRNVMIE--NIDKVLERGDRLELLVDKTANM 165 (220)
Q Consensus 130 i~~~v~~v~~im~~--ni~~~l~Rge~l~~L~~ks~~L 165 (220)
.|-+++.++.+|.+ |-+.+++|.-.=.+|.++-++|
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~l 58 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKL 58 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHH
Confidence 45567778888887 8888887743333333333333
No 63
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.08 E-value=86 Score=25.54 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q 027677 78 AFLEDIHQRFVK 89 (220)
Q Consensus 78 ~fL~~i~~~f~~ 89 (220)
..|++-.++|..
T Consensus 96 EILqdy~qef~r 107 (231)
T KOG3208|consen 96 EILQDYTQEFRR 107 (231)
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 64
>COG1422 Predicted membrane protein [Function unknown]
Probab=60.06 E-value=88 Score=25.05 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhh--hhhHHHHHhhhhhhhhHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERG--DRLELLVDKTANMQGNTFRFR 173 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rg--e~l~~L~~ks~~L~~~s~~f~ 173 (220)
.++.++|+..+|.++.+.+ +-++| ++++.|+++=.++.....++.
T Consensus 72 ekm~~~qk~m~efq~e~~e----A~~~~d~~~lkkLq~~qmem~~~Q~elm 118 (201)
T COG1422 72 EKMKELQKMMKEFQKEFRE----AQESGDMKKLKKLQEKQMEMMDDQRELM 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888887776654 33433 566667666665554444443
No 65
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=58.93 E-value=41 Score=20.89 Aligned_cols=42 Identities=10% Similarity=0.318 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 166 (220)
+.|..+...+.+++++..+==+.+-+-|+-||.+.+..+.-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 567888999999999776655666677888888887776533
No 66
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=57.50 E-value=21 Score=24.17 Aligned_cols=22 Identities=18% Similarity=0.541 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 027677 187 NVKLTVALIILILVIVYVVLAF 208 (220)
Q Consensus 187 ~~k~~~ii~~vv~~ii~~i~~~ 208 (220)
+.|-.+|+.++|++++.+|+..
T Consensus 32 ~lKrlliivvVvVlvVvvivg~ 53 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIVGA 53 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHHHH
Confidence 5566666666666655555543
No 67
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=57.26 E-value=1.1e+02 Score=25.09 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHH
Q 027677 136 QVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR 177 (220)
Q Consensus 136 ~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~ 177 (220)
+++.++..++.++- +.+....++....-.++++.=+
T Consensus 113 e~k~~~~~ei~k~r------~e~~~ml~evK~~~E~y~k~~k 148 (230)
T PF03904_consen 113 ELKNIAQNEIKKVR------EENKSMLQEVKQSHEKYQKRQK 148 (230)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655543 2333334444444445544444
No 68
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.17 E-value=93 Score=24.41 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCceEEEeCCEEEEEE-EeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc--hhhhhcccCCCchhhhHHHHHHhh
Q 027677 41 DSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG--RAVLSAQAYGMNDEFSRVLSQQME 116 (220)
Q Consensus 41 ~~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~--~~~~~~~~~~~~~~f~~~l~~~~~ 116 (220)
.+...++.+.+..|+. .-.|+-|++++++.. ..|=.+|+.+...|. .|. +..-+..-+--+.-|++.|+.+++
T Consensus 121 SGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYs-DyvlKNPfYSlEMPIRc~lFDe~lk~~le 196 (199)
T KOG3369|consen 121 SGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYS-DYVLKNPFYSLEMPIRCELFDEKLKFLLE 196 (199)
T ss_pred CceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHH-HHhhcCCccCcccceeHHHhhHHHHHHHh
Confidence 4667888899998854 579999999999887 467788888887665 442 111110000012457777776664
No 69
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=56.78 E-value=26 Score=19.77 Aligned_cols=18 Identities=33% Similarity=0.837 Sum_probs=10.7
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILIL 199 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~ 199 (220)
+.|-||...-+.+.+|++
T Consensus 17 qkwirnit~cfal~vv~l 34 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVL 34 (40)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888766555444433
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.95 E-value=1.1e+02 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=11.0
Q ss_pred hhhhhHHHHHhhhhhhhhHHHHHH
Q 027677 151 RGDRLELLVDKTANMQGNTFRFRK 174 (220)
Q Consensus 151 Rge~l~~L~~ks~~L~~~s~~f~~ 174 (220)
+...++.|.+.-+.|+.+-..-+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544433333
No 71
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.91 E-value=95 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVL 149 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l 149 (220)
....+++.+++.+++-+.+-|+++-
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888777644
No 72
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=55.73 E-value=57 Score=25.06 Aligned_cols=10 Identities=30% Similarity=0.859 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 027677 177 RRFRSTVWWR 186 (220)
Q Consensus 177 ~~l~r~~~~~ 186 (220)
.+++.-.-|+
T Consensus 83 ERl~allsWr 92 (156)
T PF08372_consen 83 ERLQALLSWR 92 (156)
T ss_pred HHHHHhhccC
Confidence 3444444453
No 73
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=54.97 E-value=18 Score=22.86 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEE--eCCeEEEEEEcC
Q 027677 22 ATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKR--TDGLTVLCMADD 69 (220)
Q Consensus 22 ~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~--~~~~~~~~itd~ 69 (220)
-.+|+.+-..+-+++..+..-|..|+.+|...+=+. .+|-.|+|...+
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e 57 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGRE 57 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCC
Confidence 367888888888888876678999999986665443 588889998554
No 74
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=54.68 E-value=1.3e+02 Score=25.65 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=7.4
Q ss_pred HHHHHHhCCCCCC
Q 027677 204 VVLAFVCHGLTLP 216 (220)
Q Consensus 204 ~i~~~~c~gf~~~ 216 (220)
=++.++- |+||+
T Consensus 276 TlIagiy-GMNf~ 287 (322)
T COG0598 276 TLITGFY-GMNFK 287 (322)
T ss_pred HHHHccc-ccCCC
Confidence 3445566 88875
No 75
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.32 E-value=19 Score=26.49 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027677 190 LTVALIILILVIVYVVL 206 (220)
Q Consensus 190 ~~~ii~~vv~~ii~~i~ 206 (220)
+.+|+++|++.++.+|+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 45555566665554444
No 76
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=53.81 E-value=25 Score=20.17 Aligned_cols=6 Identities=17% Similarity=1.004 Sum_probs=2.5
Q ss_pred HHHHHh
Q 027677 205 VLAFVC 210 (220)
Q Consensus 205 i~~~~c 210 (220)
++..+|
T Consensus 23 ~~~YaC 28 (38)
T PF02439_consen 23 MFYYAC 28 (38)
T ss_pred HHHHHH
Confidence 333445
No 77
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=53.55 E-value=1.7e+02 Score=26.95 Aligned_cols=20 Identities=5% Similarity=0.298 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q 027677 132 GEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 132 ~~v~~v~~im~~ni~~~l~R 151 (220)
.+.+++.....+.+...++.
T Consensus 68 ~~~~~~~~~w~~~~~~~~~~ 87 (569)
T PRK10600 68 AQLQALQDYWRNELKPALQQ 87 (569)
T ss_pred HHHHHHHHHHHHhhhHHhhc
Confidence 44444544444455554443
No 78
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.32 E-value=79 Score=25.34 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHH--HHHhHHH--HHHHHHHHHHHHHHHH
Q 027677 132 GEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW--WRNVKLT--VALIILILVIVYVVLA 207 (220)
Q Consensus 132 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~--~~~~k~~--~ii~~vv~~ii~~i~~ 207 (220)
+++..+|..|.|==+-++++=|++-+=-++-|=|-+.+...+.++...|++-. -|..+|. =+-.+++++++++|++
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyi 204 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYI 204 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHH
Confidence 45566666665544444444344333333444455778888888877665542 2222222 2334444444455554
Q ss_pred HHh
Q 027677 208 FVC 210 (220)
Q Consensus 208 ~~c 210 (220)
++-
T Consensus 205 iv~ 207 (217)
T KOG0859|consen 205 IVA 207 (217)
T ss_pred HHH
Confidence 443
No 79
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=53.04 E-value=21 Score=35.24 Aligned_cols=43 Identities=16% Similarity=0.454 Sum_probs=28.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 027677 168 NTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 168 ~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~~~c 210 (220)
.|..-..+--|--++..|+.|+++++..+++++++++.++.+-
T Consensus 1050 tsf~wl~sp~K~~~~i~W~~yr~~il~~l~ililll~l~~fly 1092 (1105)
T KOG1326|consen 1050 TSFLWLTSPCKSFKFILWHRYRWYILLLLLILILLLLLALFLY 1092 (1105)
T ss_pred ccchhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555688999999999887777766655554444
No 80
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.77 E-value=1.4e+02 Score=25.13 Aligned_cols=19 Identities=5% Similarity=0.239 Sum_probs=11.2
Q ss_pred hHHHHHHhHHHHHHHHHHH
Q 027677 168 NTFRFRKQARRFRSTVWWR 186 (220)
Q Consensus 168 ~s~~f~~~a~~l~r~~~~~ 186 (220)
.+..-...+..|++.+..+
T Consensus 220 a~~nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 220 ASVNVEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555667777766443
No 81
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=52.23 E-value=1.3e+02 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027677 158 LVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVY 203 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~ 203 (220)
+...+..|...+.....- .++.|+ ++.|+++++|++++++
T Consensus 204 ~d~n~~~l~~~~~rl~~~----~~~~~~--~~~~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 204 LDRNLSSLKRESKRLKEH----SSKSWG--CWTWLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhccc--HHHHHHHHHHHHHHHH
Confidence 444555666666665443 334443 3444444444444333
No 82
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=51.93 E-value=60 Score=20.61 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=5.3
Q ss_pred hhhHHHHHH
Q 027677 166 QGNTFRFRK 174 (220)
Q Consensus 166 ~~~s~~f~~ 174 (220)
.+.|..|-+
T Consensus 8 nETA~~FL~ 16 (60)
T PF06072_consen 8 NETATEFLR 16 (60)
T ss_pred cccHHHHHH
Confidence 356666754
No 83
>PF14992 TMCO5: TMCO5 family
Probab=51.79 E-value=1.5e+02 Score=25.12 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 027677 178 RFRSTVWWRNVKLTVALI 195 (220)
Q Consensus 178 ~l~r~~~~~~~k~~~ii~ 195 (220)
+-++..|.|.+++.++.+
T Consensus 208 ~~~~~~wkr~lr~l~f~v 225 (280)
T PF14992_consen 208 KNSPTFWKRALRLLFFMV 225 (280)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 334678888888854333
No 84
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.60 E-value=22 Score=24.10 Aligned_cols=21 Identities=10% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027677 190 LTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 190 ~~~ii~~vv~~ii~~i~~~~c 210 (220)
+..|++++|++++-+++|.++
T Consensus 6 i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555554
No 85
>PF15339 Afaf: Acrosome formation-associated factor
Probab=51.59 E-value=28 Score=27.13 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=13.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhC
Q 027677 189 KLTVALIIL-ILVIVYVVLAFVCH 211 (220)
Q Consensus 189 k~~~ii~~v-v~~ii~~i~~~~c~ 211 (220)
|+.+++++. .-+++|++++++|.
T Consensus 129 KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 129 KLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343444333 34667788888883
No 86
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=51.57 E-value=76 Score=21.73 Aligned_cols=20 Identities=20% Similarity=0.337 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q 027677 132 GEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 132 ~~v~~v~~im~~ni~~~l~R 151 (220)
...++.++-+.+.++.+-++
T Consensus 27 ~~~~~~r~~~~~~~~~a~~~ 46 (94)
T PF05957_consen 27 EKADEARDRAEEALDDARDR 46 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 87
>PRK10132 hypothetical protein; Provisional
Probab=51.50 E-value=88 Score=22.42 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=6.0
Q ss_pred hhhHHHHHhhhhhh
Q 027677 153 DRLELLVDKTANMQ 166 (220)
Q Consensus 153 e~l~~L~~ks~~L~ 166 (220)
++++.+-++.+..-
T Consensus 41 ~~~~~lR~r~~~~L 54 (108)
T PRK10132 41 GEAEAARRKAQALL 54 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 88
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=51.24 E-value=8.9 Score=34.07 Aligned_cols=13 Identities=23% Similarity=0.846 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCC
Q 027677 200 VIVYVVLAFVCHG 212 (220)
Q Consensus 200 ~ii~~i~~~~c~g 212 (220)
||-|+.||++|+|
T Consensus 383 lvGfLcWwf~crg 395 (397)
T PF03302_consen 383 LVGFLCWWFICRG 395 (397)
T ss_pred HHHHHhhheeecc
Confidence 4558999999977
No 89
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=51.23 E-value=82 Score=28.74 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.0
Q ss_pred HHhHHHHHHHHHHHH
Q 027677 186 RNVKLTVALIILILV 200 (220)
Q Consensus 186 ~~~k~~~ii~~vv~~ 200 (220)
--+-+.+++.+|||+
T Consensus 211 ~~~v~lL~l~LvvC~ 225 (526)
T KOG4433|consen 211 LAYVLLLTLLLVVCL 225 (526)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444555554
No 90
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.60 E-value=1.6e+02 Score=25.88 Aligned_cols=27 Identities=4% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHhhhhhhhhHH--HHHHhHHHHHHHHH
Q 027677 158 LVDKTANMQGNTF--RFRKQARRFRSTVW 184 (220)
Q Consensus 158 L~~ks~~L~~~s~--~f~~~a~~l~r~~~ 184 (220)
+.++...|+++|. ..++.-++||.-+.
T Consensus 317 meerg~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 317 MEERGSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5667777777777 55556666665543
No 91
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.74 E-value=59 Score=28.56 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=35.2
Q ss_pred CCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 49 DRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 49 ~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
..|.++-...+++.|++++..+.|.-.++.||++|.+-|..-|+
T Consensus 53 p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 53 PHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred CceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 34444444578888888888899999999999999998887666
No 92
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=49.48 E-value=13 Score=25.91 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 027677 188 VKLTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 188 ~k~~~ii~~vv~~ii~~i~~~~c 210 (220)
|+.++..++-+++++++|.+..|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHH
Confidence 55666666666655655656555
No 93
>COG4327 Predicted membrane protein [Function unknown]
Probab=49.42 E-value=36 Score=23.68 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027677 175 QARRFRSTVWWRNVKLTVALIILILVIVYVVLAF 208 (220)
Q Consensus 175 ~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~~ 208 (220)
.+...++..|..|.+++.++.+|-.++-|++++.
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvvi~f 38 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVVILF 38 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888877777666666666443
No 94
>PHA02650 hypothetical protein; Provisional
Probab=49.09 E-value=15 Score=24.69 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHHH
Q 027677 188 VKLTVALIILILVIV 202 (220)
Q Consensus 188 ~k~~~ii~~vv~~ii 202 (220)
+.++++++.++++++
T Consensus 50 ~~~ii~i~~v~i~~l 64 (81)
T PHA02650 50 QNFIFLIFSLIIVAL 64 (81)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444333333333
No 95
>PHA02844 putative transmembrane protein; Provisional
Probab=49.07 E-value=16 Score=24.22 Aligned_cols=13 Identities=8% Similarity=0.396 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027677 190 LTVALIILILVIV 202 (220)
Q Consensus 190 ~~~ii~~vv~~ii 202 (220)
++++++.++++++
T Consensus 51 ~ii~i~~v~~~~~ 63 (75)
T PHA02844 51 WILTIIFVVFATF 63 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 96
>PHA01811 hypothetical protein
Probab=48.37 E-value=24 Score=22.63 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=15.9
Q ss_pred CCceEEEeCCEEEEEEEeCC
Q 027677 41 DSHVSYSQDRYIFHVKRTDG 60 (220)
Q Consensus 41 ~~k~~~~~~~~~~~~l~~~~ 60 (220)
+.-.++...||.+||+.+++
T Consensus 4 ddivtlrvkgyi~hyldd~n 23 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDDN 23 (78)
T ss_pred ccEEEEEEeeEEEEEEcCch
Confidence 55678888999999998653
No 97
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=47.55 E-value=27 Score=28.53 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCC
Q 027677 200 VIVYVVLAFVCHG 212 (220)
Q Consensus 200 ~ii~~i~~~~c~g 212 (220)
+++|+|++.++||
T Consensus 161 lilf~i~w~~~~g 173 (224)
T PF03839_consen 161 LILFLITWFFTGG 173 (224)
T ss_pred HHHHHHHHHHhcC
Confidence 3556777777756
No 98
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.22 E-value=1.1e+02 Score=23.13 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHH
Q 027677 109 RVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMI 142 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~ 142 (220)
..|+.++.. +.|...++.++..|+.+++..|.
T Consensus 75 ~ELnALl~~--~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 75 YEYNALLTA--NPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 344445432 34666778888888888877554
No 99
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=46.87 E-value=85 Score=20.91 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=38.6
Q ss_pred ecCCCCCHHHHHHHHhccCCC-CCCCceEEEeCC-EEEEEEE--eCCeEEEEEEcCCc
Q 027677 18 CSATATNASAIARQILDKIPG-NNDSHVSYSQDR-YIFHVKR--TDGLTVLCMADDTA 71 (220)
Q Consensus 18 ~~~~~~~~~~~a~~il~ki~~-~~~~k~~~~~~~-~~~~~l~--~~~~~~~~itd~~~ 71 (220)
......+|+.+...+-+++.. +..-+..++.+| ....-+. ++|-.|+|...+.+
T Consensus 21 ~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 21 NRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred ChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 333447899988888888874 467788999888 5554432 68999999866543
No 100
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=46.79 E-value=1.2e+02 Score=29.57 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhh-hhHHHHHhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGD-RLELLVDKT 162 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge-~l~~L~~ks 162 (220)
|.+..+...++.+.+|...|+..+.+||+ .++.|.+|.
T Consensus 328 ~qlp~vd~~~~gm~~V~~sei~~~~q~~~s~~n~l~~kv 366 (865)
T KOG4331|consen 328 DQLPNVDAFLSGMPNVVTSEILQSVQRGNSLFNVLPDKV 366 (865)
T ss_pred hhCCCchHHHhccccchHHHHHHHHHhhhhhhhhhhHHH
Confidence 55556667778888888899999999885 345555544
No 101
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=46.66 E-value=94 Score=21.33 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=7.6
Q ss_pred hhhhHHHHHHhhhh
Q 027677 105 DEFSRVLSQQMEYY 118 (220)
Q Consensus 105 ~~f~~~l~~~~~~y 118 (220)
..+...++++..+.
T Consensus 29 ~~l~~~~~~~~~~l 42 (124)
T PF00482_consen 29 GPLREELQKIRRRL 42 (124)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555555
No 102
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=46.34 E-value=1.1e+02 Score=22.16 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred CCCCceEEEeCCEEEEEE-EeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhchh--hhhcccCCCchhhhHHHHHHh
Q 027677 39 NNDSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA--VLSAQAYGMNDEFSRVLSQQM 115 (220)
Q Consensus 39 ~~~~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~--~~~~~~~~~~~~f~~~l~~~~ 115 (220)
.+.++..+..+.+..|.. ...|.-|+.++.+... ..+++ |+.+...|. +|--. .-+..-+--+.-|++.+++..
T Consensus 55 gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~t~-na~~q-l~kiY~lYs-dYV~knPfys~EMPI~c~lFde~lkrm~ 131 (134)
T COG5122 55 GSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKRTV-NALFQ-LQKIYSLYS-DYVTKNPFYSPEMPIQCSLFDEHLKRMF 131 (134)
T ss_pred CCCceEEEEeccEEEEEEEecCCcEEEEEecCCch-hHHHH-HHHHHHHHH-HHhhcCCCCCcccceehhhhhHHHHHHh
Confidence 457788888899888854 5789999999944332 23344 344444333 23211 111100111246777777665
Q ss_pred h
Q 027677 116 E 116 (220)
Q Consensus 116 ~ 116 (220)
+
T Consensus 132 e 132 (134)
T COG5122 132 E 132 (134)
T ss_pred c
Confidence 4
No 103
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.17 E-value=1.5e+02 Score=24.14 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHH-----HHHHHHHHhHHHHHHHHHHHH
Q 027677 140 VMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRF-----RSTVWWRNVKLTVALIILILV 200 (220)
Q Consensus 140 im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l-----~r~~~~~~~k~~~ii~~vv~~ 200 (220)
.+..+++.+.++-+++..-..|+..+..-+..+..+=+.+ .|--||.-+-...+|++.++-
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQ 215 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQ 215 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhh
Confidence 3444556666666666666667777776666655544443 344577777666655444433
No 104
>smart00096 UTG Uteroglobin.
Probab=45.73 E-value=47 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 111 LSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 111 l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
-+..++.||.+|.. +...++++=+|....-=++||-+++++
T Consensus 21 Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 21 YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44557778665543 556677777777666666666666643
No 105
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=45.69 E-value=70 Score=19.59 Aligned_cols=43 Identities=9% Similarity=0.393 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+..+...+.+++++..+=-..+-+.++.|+.+.+..+....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~ 54 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADV 54 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6678888888888887765555666677888888777665443
No 106
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.39 E-value=75 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh
Q 027677 131 KGEMSQVRNVMIENIDKVLERG 152 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~~~l~Rg 152 (220)
.+.++-..+.|.++||..|+..
T Consensus 132 se~Mdm~~Emm~daIDdal~~~ 153 (224)
T KOG3230|consen 132 SEIMDMKEEMMDDAIDDALGDD 153 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 3556777788999999999543
No 107
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.03 E-value=1.7e+02 Score=23.75 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=32.9
Q ss_pred hHHHHHHhh-hhhHHHHHhhhhhhhhHHHHHHhHHH----------HHHHHHHHHhHHHHHHHHHHHHHHH
Q 027677 144 NIDKVLERG-DRLELLVDKTANMQGNTFRFRKQARR----------FRSTVWWRNVKLTVALIILILVIVY 203 (220)
Q Consensus 144 ni~~~l~Rg-e~l~~L~~ks~~L~~~s~~f~~~a~~----------l~r~~~~~~~k~~~ii~~vv~~ii~ 203 (220)
-+|.+|++| .-+|+|+++-..|+..-+.+..-+.. +.|+. +.=|+++++++++|++++
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~--~~Dk~iF~~G~i~~~v~~ 205 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRV--REDKIIFYGGVILTLVIM 205 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 456677777 55677777777777655555543332 23332 233566666666665443
No 108
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=44.85 E-value=1.5e+02 Score=23.20 Aligned_cols=106 Identities=10% Similarity=0.186 Sum_probs=56.4
Q ss_pred EEEEEcCCcCcchHHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHH
Q 027677 63 VLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMI 142 (220)
Q Consensus 63 ~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~ 142 (220)
|.|.+-+- -....-.|++.+..++.+...++...... .-.-.|....+-.+.-- +++.. .+-+.++-.+|.
T Consensus 66 F~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~-~W~LAl~~a~~~~Iql~-e~~~~------~~~vk~L~~~mv 136 (174)
T PF04510_consen 66 FICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVE-DWVLALTGAVCMAIQLL-ESSMR------VDLVKELLPKMV 136 (174)
T ss_pred HHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHH-HHHHHHHHHHHHHHHHh-ccccH------HHHHHHHHHHHH
Confidence 55555333 33345577777777777655432210000 00012333333333333 22221 123555666699
Q ss_pred HhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q 027677 143 ENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRN 187 (220)
Q Consensus 143 ~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~ 187 (220)
+.+.++++||...+-+.+ .|+.=.+-++|.++|=+
T Consensus 137 ~Sv~elV~~g~E~~~l~r----------gl~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 137 KSVKELVERGMEVGFLRR----------GLRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHcccHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 999999999988776654 44444466777777644
No 109
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.74 E-value=89 Score=20.53 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRK 174 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~ 174 (220)
|.++-+|.++++.|+.-..=-..+-+-.+..+.|+...+.|+..-...+.
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888877643222222223334455566666665555444443
No 110
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=44.59 E-value=1.7e+02 Score=23.90 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=13.8
Q ss_pred hhhHHHHHHhHHHHHHHHHHH
Q 027677 166 QGNTFRFRKQARRFRSTVWWR 186 (220)
Q Consensus 166 ~~~s~~f~~~a~~l~r~~~~~ 186 (220)
..++...+-.+.+++++-.-+
T Consensus 193 D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 193 DVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred hHHHHHHHhhhHHHHHHHHhh
Confidence 346666667777777776544
No 111
>PHA03011 hypothetical protein; Provisional
Probab=44.53 E-value=1.1e+02 Score=21.61 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=39.3
Q ss_pred hhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhh
Q 027677 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANM 165 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L 165 (220)
.....+.++.-+|| .-.|...-+..+..+...+..+|.|.+.--...+|.|.+.-.++
T Consensus 61 ai~e~ldeL~~qYN--~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 61 AIIEILDELIAQYN--ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 44556666777773 33355666777888888888888887776666777776655544
No 112
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=44.40 E-value=1.9e+02 Score=24.35 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhh
Q 027677 134 MSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (220)
Q Consensus 134 v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 166 (220)
.++.+.....+.+++-++.++++..+++.++++
T Consensus 21 ~~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaq 53 (306)
T PF04888_consen 21 KEQIERASEAQEKKAEEKAEEIEEAQEKAEEAQ 53 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333455666677777777777765543
No 113
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=43.82 E-value=71 Score=19.17 Aligned_cols=43 Identities=14% Similarity=0.395 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+..+...+.+++++..+==..+-+-|+.|+.+.+..+....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~ 48 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887664444555666788888776665443
No 114
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=43.75 E-value=8.7 Score=26.50 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 027677 184 WWRNVKLTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~~ii~~i~~~~c 210 (220)
-|.++-..+|+.++.++++|+.+.++-
T Consensus 33 ~ws~vv~v~i~~lvaVg~~YL~y~~fL 59 (91)
T PF01708_consen 33 PWSRVVEVAIFTLVAVGCLYLAYTWFL 59 (91)
T ss_pred cceeEeeeeehHHHHHHHHHHHHHHHH
Confidence 366777777888888888888887764
No 115
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.89 E-value=1.2e+02 Score=25.18 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=7.6
Q ss_pred cCCCchhhhHHHHHHhhhh
Q 027677 100 AYGMNDEFSRVLSQQMEYY 118 (220)
Q Consensus 100 ~~~~~~~f~~~l~~~~~~y 118 (220)
+|.+...+. .+.+.+..|
T Consensus 19 ~~~l~~~~e-~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIE-DLTNQLRSY 36 (264)
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 444443333 344444444
No 116
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=42.85 E-value=90 Score=24.73 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=25.5
Q ss_pred hHHHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 027677 108 SRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGD 153 (220)
Q Consensus 108 ~~~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~Rge 153 (220)
...++.....| .+|+- +.+-.-+.+..+.-.-+.+.++++||+|.
T Consensus 140 ~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~Lnklld~g~ 185 (186)
T PF05527_consen 140 HGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGLNKLLDEGS 185 (186)
T ss_dssp HHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHHHHHHhCCC
Confidence 34555666666 34432 33333344566666667788999999985
No 117
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=42.41 E-value=53 Score=20.45 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhH
Q 027677 127 INRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNT 169 (220)
Q Consensus 127 l~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s 169 (220)
|.++|.+.+.+-+-+..-|| +=|.+||+|+..-.+|..+|
T Consensus 12 L~qmq~kFq~mS~~I~~riD---eM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRID---EMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhc
Confidence 34445555554443333333 33667777776666665554
No 118
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=42.12 E-value=65 Score=19.71 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=9.6
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 027677 185 WRNVKLTVALIILILVIV 202 (220)
Q Consensus 185 ~~~~k~~~ii~~vv~~ii 202 (220)
|...++..++.++|+.++
T Consensus 11 y~tLrigGLi~A~vlfi~ 28 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLFIL 28 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHHHHH
Confidence 566666555554444333
No 119
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=42.06 E-value=51 Score=21.78 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 183 VWWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 183 ~~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
.||+..|..++..+..+++-|.+.+
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~w 26 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAILW 26 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888887776666654454443
No 120
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=41.72 E-value=56 Score=30.50 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027677 125 DRINRIKGEMSQVRNVMIEN 144 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~n 144 (220)
+.+..++++++.+.++..+|
T Consensus 442 ~~i~~l~~~~~sl~~~v~qn 461 (561)
T PF00429_consen 442 DSISALQEQLTSLAEVVLQN 461 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 78889999999999988887
No 121
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.58 E-value=2.5e+02 Score=24.88 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=27.5
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 110 VLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 110 ~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
.+.++...| .|...++..++.++++++..+.+.+.++...
T Consensus 269 ~l~~l~~~y--~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 269 KLAELSQRL--GPNHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456 3566788888889999888887777766543
No 122
>PHA03054 IMV membrane protein; Provisional
Probab=40.97 E-value=24 Score=23.18 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 027677 189 KLTVALIILILV 200 (220)
Q Consensus 189 k~~~ii~~vv~~ 200 (220)
.++++++.++++
T Consensus 50 ~~ii~l~~v~~~ 61 (72)
T PHA03054 50 WLIIIFFIVLIL 61 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 123
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=40.86 E-value=42 Score=20.14 Aligned_cols=24 Identities=13% Similarity=0.530 Sum_probs=12.9
Q ss_pred HhHHHHH-HHHHHHHHHHHHHH-HHh
Q 027677 187 NVKLTVA-LIILILVIVYVVLA-FVC 210 (220)
Q Consensus 187 ~~k~~~i-i~~vv~~ii~~i~~-~~c 210 (220)
++|+.++ +++++|+++|...+ .-|
T Consensus 3 k~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 4455444 44555666665544 456
No 124
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=40.80 E-value=27 Score=26.52 Aligned_cols=6 Identities=50% Similarity=0.755 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027677 189 KLTVAL 194 (220)
Q Consensus 189 k~~~ii 194 (220)
|+++.+
T Consensus 120 klilai 125 (154)
T PF14914_consen 120 KLILAI 125 (154)
T ss_pred hhHHHH
Confidence 444333
No 125
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=40.57 E-value=1.2e+02 Score=24.67 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=42.8
Q ss_pred HHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 027677 142 IENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 198 (220)
Q Consensus 142 ~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv 198 (220)
.+.++|++.-|..+.+|+.|...|=..-+.--+.-|+.=--...+.-|.|..|+=++
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI~ 62 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEIV 62 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998877766665555554456677778887766543
No 126
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=40.51 E-value=87 Score=21.21 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027677 180 RSTVWWRNVKLTVALIILILVIVYVV 205 (220)
Q Consensus 180 ~r~~~~~~~k~~~ii~~vv~~ii~~i 205 (220)
++..|-+|.+++.++.++=.++.|+.
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678788888777655555555544
No 127
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=40.27 E-value=32 Score=30.35 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 027677 180 RSTVWWRNVKLTVALIILILVIVYV 204 (220)
Q Consensus 180 ~r~~~~~~~k~~~ii~~vv~~ii~~ 204 (220)
+++-||.++...+++.+++++++..
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~ 318 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGF 318 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHH
Confidence 4567999998877765555444433
No 128
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=40.12 E-value=1.7e+02 Score=22.95 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=25.0
Q ss_pred hhHHHHHHhhhhcC---Cc-chhHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 107 FSRVLSQQMEYYSD---DP-NADRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 107 f~~~l~~~~~~yn~---~~-~~dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
.-|.+.+++++|.. .| .++.+.+..++.+++-+.+.+++++.+++
T Consensus 134 yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~ 182 (199)
T PF10112_consen 134 YLPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDK 182 (199)
T ss_pred HhhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777721 22 23555555555666655566666555544
No 129
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.81 E-value=23 Score=30.21 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=29.9
Q ss_pred hHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHH----HHhHHHHHHhhhhhH--HHHHhhh
Q 027677 108 SRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVM----IENIDKVLERGDRLE--LLVDKTA 163 (220)
Q Consensus 108 ~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im----~~ni~~~l~Rge~l~--~L~~ks~ 163 (220)
+|.+++.|+.|| +.......+=++.+.+.++.. -++|++++-. +++| .|.||.|
T Consensus 34 DPeMK~Vme~F~-rqTsQRF~EYdErm~~kRqkcKEqcDKeIQKIIlK-DKiEKKSladKvE 93 (299)
T PF02009_consen 34 DPEMKSVMENFD-RQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILK-DKIEKKSLADKVE 93 (299)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHhccccceeecc-cchhhhhHHHHHH
Confidence 788888888884 333344444444443333333 3466666644 3444 5556655
No 130
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=39.54 E-value=47 Score=21.99 Aligned_cols=8 Identities=25% Similarity=0.629 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 027677 134 MSQVRNVM 141 (220)
Q Consensus 134 v~~v~~im 141 (220)
+|.|+.+|
T Consensus 24 i~vVksVl 31 (72)
T PF12575_consen 24 INVVKSVL 31 (72)
T ss_pred HHHHHHHH
Confidence 44444444
No 131
>PHA02819 hypothetical protein; Provisional
Probab=39.29 E-value=27 Score=22.93 Aligned_cols=9 Identities=11% Similarity=0.645 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 027677 191 TVALIILIL 199 (220)
Q Consensus 191 ~~ii~~vv~ 199 (220)
+++++.+++
T Consensus 50 ii~l~~~~~ 58 (71)
T PHA02819 50 IIGLVTIVF 58 (71)
T ss_pred HHHHHHHHH
Confidence 333333333
No 132
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=39.12 E-value=64 Score=20.67 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=26.0
Q ss_pred HHHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027677 109 RVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLE 150 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~ 150 (220)
..+...++.||.+|.. +...++|+=+++....=..|+-++|+
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 4567778888665543 66667777776665544555555543
No 133
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=39.08 E-value=1.1e+02 Score=21.35 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHhHHHHHHH----HHHHHhHHHHHHHHHHHHH
Q 027677 164 NMQGNTFRFRKQARRFRST----VWWRNVKLTVALIILILVI 201 (220)
Q Consensus 164 ~L~~~s~~f~~~a~~l~r~----~~~~~~k~~~ii~~vv~~i 201 (220)
+|.-.-..|.+++.++++. .+-+|||-.+-.+++..++
T Consensus 29 dL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alV 70 (108)
T KOG4782|consen 29 DLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALV 70 (108)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 4444455565555554432 2345666655554444433
No 134
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=39.08 E-value=1.4e+02 Score=21.18 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 027677 155 LELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILIL 199 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~ 199 (220)
++.+.+-+++.+.+.+.|. +.-|+++...+++-+++.
T Consensus 20 ~~~I~k~~~~~n~~kk~fk--------ki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 20 IDYIDKLKKDPNIDKKKFK--------KIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHHhhCCChhHHHHH--------HHHHHHhhHHHHHHHHHH
Confidence 3344444555555555553 345566666555554444
No 135
>PHA02975 hypothetical protein; Provisional
Probab=38.90 E-value=45 Score=21.80 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 027677 191 TVALIILILVIV 202 (220)
Q Consensus 191 ~~ii~~vv~~ii 202 (220)
+++++.++++++
T Consensus 48 ii~i~~v~~~~~ 59 (69)
T PHA02975 48 IIFIIFITCIAV 59 (69)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 136
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.48 E-value=1.6e+02 Score=27.60 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=44.4
Q ss_pred hhhHHHHHHhhhhc----CCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHH
Q 027677 106 EFSRVLSQQMEYYS----DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRK 174 (220)
Q Consensus 106 ~f~~~l~~~~~~yn----~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~ 174 (220)
++...+++.-.+|+ +-|+.+++...++++++++.-=.+|...+.++-+.++.|....+........|++
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 3466688899999999988844456667778888888777766665554444443
No 137
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.41 E-value=48 Score=28.03 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Q 027677 191 TVALIILILVIVYVVLAFVCHGLTL 215 (220)
Q Consensus 191 ~~ii~~vv~~ii~~i~~~~c~gf~~ 215 (220)
.++++++|++||+.||+.-=..=+|
T Consensus 266 lvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4445555666677788765555555
No 138
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.13 E-value=32 Score=29.41 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=4.9
Q ss_pred eEEeeecC
Q 027677 13 VVLAECSA 20 (220)
Q Consensus 13 ~iLae~~~ 20 (220)
..|||..-
T Consensus 19 R~LcECel 26 (299)
T PF02009_consen 19 RSLCECEL 26 (299)
T ss_pred cchhhhcc
Confidence 56776653
No 139
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.07 E-value=2.9e+02 Score=24.60 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=11.4
Q ss_pred HHHHHhhhhhHHHHHhhhh
Q 027677 146 DKVLERGDRLELLVDKTAN 164 (220)
Q Consensus 146 ~~~l~Rge~l~~L~~ks~~ 164 (220)
=.+-||+++|+..-++..+
T Consensus 129 v~~gE~~G~L~~~l~~la~ 147 (397)
T COG1459 129 VAAGERSGNLDEVLQRLAK 147 (397)
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 3455677777766555554
No 140
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.76 E-value=43 Score=29.19 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q 027677 132 GEMSQVRNVMIENIDKVLERGDRLELLVD 160 (220)
Q Consensus 132 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ 160 (220)
...++++..|.+|.++.-+|+.+.+....
T Consensus 126 ~~~de~~~l~~e~~~~~~d~v~k~~~k~e 154 (372)
T KOG2927|consen 126 KAKDEVKALLKEGLKKLCDRVAKTEEKGE 154 (372)
T ss_pred hHHHHHHHhhccchhhhccchhcccccch
Confidence 35678888888998888766655555444
No 141
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=37.62 E-value=38 Score=27.16 Aligned_cols=39 Identities=18% Similarity=0.525 Sum_probs=25.9
Q ss_pred HHHHHHHHHH----HhHHHHHH-------------H-HHHHHHHHHHHHHHhCCCCC
Q 027677 177 RRFRSTVWWR----NVKLTVAL-------------I-ILILVIVYVVLAFVCHGLTL 215 (220)
Q Consensus 177 ~~l~r~~~~~----~~k~~~ii-------------~-~vv~~ii~~i~~~~c~gf~~ 215 (220)
..+.|+.||+ .+|+++.+ + +.......+|++.+|.||..
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf~L 152 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGFAL 152 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5678899999 88888765 2 22223344666778888753
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.37 E-value=3.6e+02 Score=26.17 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=38.8
Q ss_pred cCcchHHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcchhHHHHHHHH---HHHHHHHHHHhHHH
Q 027677 71 AGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGE---MSQVRNVMIENIDK 147 (220)
Q Consensus 71 ~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~---v~~v~~im~~ni~~ 147 (220)
.+...++.||.+-.+.|++.|-.....+. ..+..-++.+..... .+-+++..++++ +.+..+.+.+.++.
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar-----~ei~~rv~~Lk~~~e--~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAR-----EEIQRRVKLLKQQKE--QQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666888888888888777632211110 122233333333321 122333434433 33334445666666
Q ss_pred HHHhhhhhHH
Q 027677 148 VLERGDRLEL 157 (220)
Q Consensus 148 ~l~Rge~l~~ 157 (220)
+.+|.+.|..
T Consensus 605 a~d~Qe~L~~ 614 (717)
T PF10168_consen 605 AKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 143
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=37.11 E-value=45 Score=21.46 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=24.1
Q ss_pred HHHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027677 109 RVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLE 150 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~ 150 (220)
+..+..+.+|+.+|.. ....++++-+++...-=..|+.++|+
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 59 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLE 59 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566777888554432 55566777776666666666666664
No 144
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=1.6e+02 Score=21.37 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 027677 190 LTVALIILILV 200 (220)
Q Consensus 190 ~~~ii~~vv~~ 200 (220)
.|.+++++|++
T Consensus 100 ~~m~~f~lV~~ 110 (118)
T KOG3385|consen 100 CWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 145
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=36.63 E-value=1.1e+02 Score=22.86 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhh
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTAN 164 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~ 164 (220)
.+...++++.++++-+.+-=..+-.|.+.|..|-..+..
T Consensus 80 ~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~ 118 (142)
T PF04048_consen 80 SISESQERIRELKESLQEAKSLLGCRREELKELWQRSQE 118 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444444444444444333444444445444444433
No 146
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=36.08 E-value=56 Score=28.04 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVM 141 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im 141 (220)
|.|..++.+++.++.+|
T Consensus 230 ~eL~~iqaqL~tvks~m 246 (372)
T COG3524 230 DELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77788899999999999
No 147
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=35.75 E-value=4.3e+02 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.449 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC
Q 027677 169 TFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLAFVCH 211 (220)
Q Consensus 169 s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~~~c~ 211 (220)
+..|.....+--.-.|--..-+-.++.+|+++.++..+...||
T Consensus 399 ~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 399 SRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344333344433334444444555566667777777777777
No 148
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=35.72 E-value=87 Score=17.80 Aligned_cols=14 Identities=7% Similarity=0.320 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 027677 189 KLTVALIILILVIV 202 (220)
Q Consensus 189 k~~~ii~~vv~~ii 202 (220)
|-|++.+++.++++
T Consensus 14 r~Wi~F~l~mi~vF 27 (38)
T PF09125_consen 14 RGWIAFALAMILVF 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 44555555544433
No 149
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.44 E-value=44 Score=23.37 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 027677 189 KLTVALIILILVIV 202 (220)
Q Consensus 189 k~~~ii~~vv~~ii 202 (220)
|..++++++++++|
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 34455554444433
No 150
>PTZ00370 STEVOR; Provisional
Probab=35.29 E-value=44 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Q 027677 191 TVALIILILVIVYVVLAFVCHGLTL 215 (220)
Q Consensus 191 ~~ii~~vv~~ii~~i~~~~c~gf~~ 215 (220)
.++++++|++||+.||+.-=..=+|
T Consensus 262 lvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3444555566667777764433333
No 151
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=35.18 E-value=1.5e+02 Score=21.56 Aligned_cols=23 Identities=9% Similarity=0.006 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHH
Q 027677 171 RFRKQARRFRSTVWWRNVKLTVALI 195 (220)
Q Consensus 171 ~f~~~a~~l~r~~~~~~~k~~~ii~ 195 (220)
...+++++ ++.++++|.+..+..
T Consensus 57 ~~~~k~~~--~~~~i~kyg~~GL~l 79 (121)
T PF06695_consen 57 WLEKKAEK--KSKKIEKYGFWGLAL 79 (121)
T ss_pred HHHHHHHH--HHHHHHHHhHHHHHH
Confidence 34444444 566778887655443
No 152
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=35.14 E-value=1.6e+02 Score=20.64 Aligned_cols=54 Identities=28% Similarity=0.484 Sum_probs=36.7
Q ss_pred hhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhh
Q 027677 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTA 163 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~ 163 (220)
.|. .+++.++.| |..=...++..+...+.+-..-|+.+.+.|||-+..-.-.++
T Consensus 24 ~~~-~~R~~l~~Y---P~dl~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~ 77 (100)
T PF13228_consen 24 EFT-ALRERLAYY---PEDLRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISE 77 (100)
T ss_pred hHH-HHHHHHHHC---hHHHHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHH
Confidence 554 455555777 554455566667777666666799999999998876555444
No 153
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=34.97 E-value=2e+02 Score=22.86 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027677 162 TANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVL 206 (220)
Q Consensus 162 s~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~ 206 (220)
+.++...|-.| .-+.=|++-.|.=+|-++.-++...++++|+.|
T Consensus 6 ~~~~a~~a~~~-~Va~vLRWl~W~vky~VI~PlATmaLmalfVlw 49 (202)
T PF07296_consen 6 SSRQAGHALRY-VVARVLRWLFWCVKYAVIWPLATMALMALFVLW 49 (202)
T ss_pred hhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566555 456678999999999888888888888888877
No 154
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=34.41 E-value=49 Score=21.97 Aligned_cols=16 Identities=31% Similarity=0.843 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 027677 195 IILILVIVYVVLAFVC 210 (220)
Q Consensus 195 ~~vv~~ii~~i~~~~c 210 (220)
++++++++.+++..+|
T Consensus 8 ~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 8 VGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhheeEEEE
Confidence 3333334444444455
No 155
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=33.78 E-value=1.9e+02 Score=23.12 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 027677 129 RIKGEMSQVRNVMIENID 146 (220)
Q Consensus 129 ~i~~~v~~v~~im~~ni~ 146 (220)
+=.++++...+...+-++
T Consensus 105 ~W~~~i~~~~~~i~~ll~ 122 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLE 122 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHH
Confidence 344555554444433333
No 156
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.67 E-value=1.9e+02 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhh
Q 027677 132 GEMSQVRNVMIENIDKVLERGDRLELLVDKTA 163 (220)
Q Consensus 132 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~ 163 (220)
..++|+-+-+.+++.-+-+|.|.+.++.++|+
T Consensus 144 rrLed~~~sI~~e~~YLr~REeemr~~nesTN 175 (210)
T KOG1691|consen 144 RRLEDLVESIHEEMYYLREREEEMRNTNESTN 175 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45677777778888888899988888877665
No 157
>PRK13664 hypothetical protein; Provisional
Probab=33.30 E-value=89 Score=19.69 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=9.1
Q ss_pred HHHHhHHHHHHHHHHH
Q 027677 184 WWRNVKLTVALIILIL 199 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~ 199 (220)
|...|.+++|+.+.|-
T Consensus 3 WLadyWWilill~lvG 18 (62)
T PRK13664 3 WLAKYWWILVLVFLVG 18 (62)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6666777655444333
No 158
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.29 E-value=1.5e+02 Score=20.07 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=8.0
Q ss_pred hHHHHHhhhhhhhhHHHHHHhH
Q 027677 155 LELLVDKTANMQGNTFRFRKQA 176 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a 176 (220)
|..+..+-..+..-....++++
T Consensus 66 L~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 66 LVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 159
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=33.25 E-value=81 Score=17.71 Aligned_cols=13 Identities=0% Similarity=-0.184 Sum_probs=5.5
Q ss_pred HHHHhHHHHHHHH
Q 027677 184 WWRNVKLTVALII 196 (220)
Q Consensus 184 ~~~~~k~~~ii~~ 196 (220)
+.+-.++..++..
T Consensus 4 ~~~~H~W~Gl~~g 16 (37)
T PF13706_consen 4 LRKLHRWLGLILG 16 (37)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 160
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=33.17 E-value=14 Score=34.44 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=0.6
Q ss_pred hhhhHHHHHHhhhh
Q 027677 105 DEFSRVLSQQMEYY 118 (220)
Q Consensus 105 ~~f~~~l~~~~~~y 118 (220)
.+|.+++.++.+.+
T Consensus 480 iDfnkel~e~~~n~ 493 (610)
T PF01601_consen 480 IDFNKELDEIFKNL 493 (610)
T ss_dssp -------------S
T ss_pred CChHHHHHHHHHhc
Confidence 36677777777766
No 161
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=33.15 E-value=93 Score=17.56 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHhhhh
Q 027677 137 VRNVMIENIDKVLERGDR 154 (220)
Q Consensus 137 v~~im~~ni~~~l~Rge~ 154 (220)
-++.+.+.||..|++|++
T Consensus 10 ~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 10 RKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 445577889999998865
No 162
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=32.72 E-value=74 Score=22.54 Aligned_cols=15 Identities=0% Similarity=0.233 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHHHHH
Q 027677 182 TVWWRNVKLTVALII 196 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~ 196 (220)
++.|+.++..+|+++
T Consensus 2 ~~~~~~~~~~ii~~~ 16 (103)
T PRK14125 2 KLKESKIHVSIFFVL 16 (103)
T ss_pred chHHHHHHHHHHHHH
Confidence 456777766664443
No 163
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=32.63 E-value=65 Score=19.71 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=7.1
Q ss_pred HHHHHhHHHHHH
Q 027677 183 VWWRNVKLTVAL 194 (220)
Q Consensus 183 ~~~~~~k~~~ii 194 (220)
.+|+++|..++-
T Consensus 2 e~~~~~~~~iiG 13 (51)
T PF10031_consen 2 EFWKNHRGKIIG 13 (51)
T ss_pred hHHHHCcchHHH
Confidence 367777754443
No 164
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=32.62 E-value=3e+02 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027677 125 DRINRIKGEMSQVRNVMIEN 144 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~n 144 (220)
+.+..++.++...+..+..+
T Consensus 175 ~~l~~l~~~l~~l~~~l~~~ 194 (318)
T TIGR00383 175 DEILSLRTELLALRRSLWPL 194 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 165
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=32.50 E-value=1.2e+02 Score=21.50 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHhHHHHHHhhhhhHHHHHh--hhhhhhhHHHHHHhHHHHHH
Q 027677 141 MIENIDKVLERGDRLELLVDK--TANMQGNTFRFRKQARRFRS 181 (220)
Q Consensus 141 m~~ni~~~l~Rge~l~~L~~k--s~~L~~~s~~f~~~a~~l~r 181 (220)
+...+..+|.++..|+.+..- +++|+.........++.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 456677788888888888886 77788888888888888876
No 166
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=32.31 E-value=4.1e+02 Score=24.55 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 027677 128 NRIKGEMSQV 137 (220)
Q Consensus 128 ~~i~~~v~~v 137 (220)
..+++..+.-
T Consensus 123 ~~~~~~~~~y 132 (554)
T PRK15041 123 AEIKRNYDIY 132 (554)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 167
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.05 E-value=1.6e+02 Score=19.81 Aligned_cols=13 Identities=8% Similarity=0.432 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 027677 127 INRIKGEMSQVRN 139 (220)
Q Consensus 127 l~~i~~~v~~v~~ 139 (220)
+..++++++++..
T Consensus 35 i~~l~~~~~~i~~ 47 (90)
T PF06103_consen 35 IDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHhHHHHHH
Confidence 4444555544443
No 168
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=31.97 E-value=85 Score=24.14 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027677 189 KLTVALIILILVIVYVVLA 207 (220)
Q Consensus 189 k~~~ii~~vv~~ii~~i~~ 207 (220)
|+.+++.++++.++-++++
T Consensus 37 Ri~~~iSIisL~~l~v~La 55 (161)
T PHA02673 37 RLMAAIAIIVLAILVVILA 55 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 169
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=31.57 E-value=63 Score=22.76 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027677 170 FRFRKQARRFRSTVWWRNVKLTVALIILILV 200 (220)
Q Consensus 170 ~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ 200 (220)
.+|-..+-.....-.|||+-+.+...++.++
T Consensus 34 ~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~ 64 (103)
T PF06422_consen 34 DDYLEESYGYSYSHRWRNFGILIAFWIFFIV 64 (103)
T ss_pred HHHHhhhccccccchhhhHHHHHHHHHHHHH
Confidence 4555555556666788998776655444333
No 170
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=31.08 E-value=43 Score=23.04 Aligned_cols=9 Identities=56% Similarity=1.132 Sum_probs=5.1
Q ss_pred HHHHHHHHh
Q 027677 202 VYVVLAFVC 210 (220)
Q Consensus 202 i~~i~~~~c 210 (220)
+.+|.+.+|
T Consensus 46 l~VilwfvC 54 (94)
T PF05393_consen 46 LLVILWFVC 54 (94)
T ss_pred HHHHHHHHH
Confidence 345556666
No 171
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=30.99 E-value=2.4e+02 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=22.2
Q ss_pred hhhhHHHHHHhhhhcCCcchhHHH-HHHHHHHHHHHHHHH
Q 027677 105 DEFSRVLSQQMEYYSDDPNADRIN-RIKGEMSQVRNVMIE 143 (220)
Q Consensus 105 ~~f~~~l~~~~~~yn~~~~~dkl~-~i~~~v~~v~~im~~ 143 (220)
..|...+..+..+|.++ ..+|-. -++..+...|+.|..
T Consensus 49 ~~FkeelE~iasrW~~d-ak~KAEkiLnaaLaaSKeam~~ 87 (144)
T PRK13895 49 DQFKEELESIASRWGDD-AKEKAERILNAALAASKEAMAK 87 (144)
T ss_pred HHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhhHHHHHH
Confidence 57899999999999443 222222 234445555555443
No 172
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.48 E-value=2.6e+02 Score=21.80 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 027677 129 RIKGEMSQVRNVMIENID 146 (220)
Q Consensus 129 ~i~~~v~~v~~im~~ni~ 146 (220)
+++++++++-.-+..-+|
T Consensus 102 QVqqeL~~tf~rL~~~Vd 119 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVD 119 (171)
T ss_dssp --------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555444444443
No 173
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.41 E-value=6.4e+02 Score=26.25 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHH
Q 027677 128 NRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRST 182 (220)
Q Consensus 128 ~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
..+++..+-+++.+.+-.+....-.++.+.|.+.++.|-.+|+.-...-+.|.+.
T Consensus 1664 ~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~ 1718 (1758)
T KOG0994|consen 1664 EILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELE 1718 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444445566666666666666666555555555433
No 174
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=30.32 E-value=1.3e+02 Score=20.60 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=4.7
Q ss_pred HHHHHHhHH
Q 027677 182 TVWWRNVKL 190 (220)
Q Consensus 182 ~~~~~~~k~ 190 (220)
+...|.+-+
T Consensus 30 ~sfirdFvL 38 (84)
T PF06143_consen 30 RSFIRDFVL 38 (84)
T ss_pred hHHHHHHHH
Confidence 344555655
No 175
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=30.03 E-value=2.4e+02 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh-hhhHHHHHhhhhhhhhHHHH
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERG-DRLELLVDKTANMQGNTFRF 172 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rg-e~l~~L~~ks~~L~~~s~~f 172 (220)
+|..++.+++.+...|.+.|+.+-++- ..+..|....+.|...-..|
T Consensus 11 ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 11 KIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666555554433 33444444444444444333
No 176
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.90 E-value=2.3e+02 Score=20.81 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHH
Q 027677 140 VMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRST 182 (220)
Q Consensus 140 im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
...+|-+.++..-..++.+..-.+.++.+-........+++.+
T Consensus 52 ~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 52 QVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666665555665555555555555544
No 177
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=29.87 E-value=24 Score=24.74 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhC
Q 027677 200 VIVYVVLAFVCH 211 (220)
Q Consensus 200 ~ii~~i~~~~c~ 211 (220)
++.++.|+++|.
T Consensus 82 lv~~l~w~f~~r 93 (96)
T PTZ00382 82 LVGFLCWWFVCR 93 (96)
T ss_pred HHHHHhheeEEe
Confidence 334566666664
No 178
>PHA03386 P10 fibrous body protein; Provisional
Probab=29.79 E-value=1.2e+02 Score=21.18 Aligned_cols=15 Identities=0% Similarity=0.403 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRN 139 (220)
Q Consensus 125 dkl~~i~~~v~~v~~ 139 (220)
+|+..+|.+|++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 566666666666553
No 179
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=29.69 E-value=1e+02 Score=27.11 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=25.4
Q ss_pred hhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHH
Q 027677 154 RLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVA 193 (220)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~i 193 (220)
..|+..+|+++---.++.|-.+-+.-+|-+|-|.++.-++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 102 SKDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred chhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556677666677777778777766655
No 180
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.44 E-value=44 Score=26.95 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 027677 188 VKLTVALI 195 (220)
Q Consensus 188 ~k~~~ii~ 195 (220)
.|+-++|.
T Consensus 126 ~K~amLIC 133 (227)
T PF05399_consen 126 NKMAMLIC 133 (227)
T ss_pred cchhHHHH
Confidence 34433333
No 181
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.43 E-value=3.1e+02 Score=22.27 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHh--------hhhhHHHHHh---hhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHH
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLER--------GDRLELLVDK---TANMQGNTFRFRKQARRFRSTVWWRNVKLTVA 193 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~R--------ge~l~~L~~k---s~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~i 193 (220)
=|.+++..-++++. .+|+.++.+- -++|+++... .+.|+..|..+...|++-+.....=|.+..+.
T Consensus 119 ~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 119 FIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 35677777777753 3444433322 1345555444 34455677777777765554444334444333
No 182
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=29.30 E-value=81 Score=19.98 Aligned_cols=12 Identities=25% Similarity=0.532 Sum_probs=7.4
Q ss_pred HHHHhHHHHHHH
Q 027677 184 WWRNVKLTVALI 195 (220)
Q Consensus 184 ~~~~~k~~~ii~ 195 (220)
|...|+++++++
T Consensus 3 WladYWWiiLl~ 14 (63)
T PF13980_consen 3 WLADYWWIILLI 14 (63)
T ss_pred HHHHHHHHHHHH
Confidence 667777765443
No 183
>PHA02692 hypothetical protein; Provisional
Probab=29.29 E-value=42 Score=22.02 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027677 134 MSQVRNV 140 (220)
Q Consensus 134 v~~v~~i 140 (220)
+|-|+.+
T Consensus 24 i~vVksV 30 (70)
T PHA02692 24 LNIVRTV 30 (70)
T ss_pred HHHHHHH
Confidence 3333333
No 184
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.92 E-value=2e+02 Score=23.15 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=11.6
Q ss_pred HHHHHhHHHHHH-HHHHHHh
Q 027677 170 FRFRKQARRFRS-TVWWRNV 188 (220)
Q Consensus 170 ~~f~~~a~~l~r-~~~~~~~ 188 (220)
..|+..|...+. -|||.-.
T Consensus 170 ~~FR~tSES~NsRvm~Wsv~ 189 (215)
T KOG1690|consen 170 ETFRDTSESANSRVMWWSVA 189 (215)
T ss_pred HHHHhhhhhhcceeeehhHH
Confidence 467777776654 4676543
No 185
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=28.55 E-value=2.1e+02 Score=24.14 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhh---hhHHHHHHhHHHHHHHHHHHH
Q 027677 111 LSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ---GNTFRFRKQARRFRSTVWWRN 187 (220)
Q Consensus 111 l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~---~~s~~f~~~a~~l~r~~~~~~ 187 (220)
++-+++-+.-.|... +++++||+..+..+ ++..+.+++.-..-. .+...+++.....=...||+.
T Consensus 145 lkmL~eg~~~~~~~~-----~eE~eEVe~el~~~-------~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifika 212 (294)
T KOG2881|consen 145 LKMLKEGWEMSPSEG-----QEELEEVEAELAKR-------EDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKA 212 (294)
T ss_pred HHHHHHhhcCCCccc-----hhhHHHHHHHHHhc-------cchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHH
Confidence 566666552112211 78888888876543 333332222222111 122456666666666678787
Q ss_pred hHHHHH
Q 027677 188 VKLTVA 193 (220)
Q Consensus 188 ~k~~~i 193 (220)
+-+.++
T Consensus 213 FsltF~ 218 (294)
T KOG2881|consen 213 FSLTFL 218 (294)
T ss_pred HHHHHH
Confidence 765543
No 186
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=28.41 E-value=59 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC
Q 027677 193 ALIILILVIVYVVLAFVCHGLT 214 (220)
Q Consensus 193 ii~~vv~~ii~~i~~~~c~gf~ 214 (220)
+++++++++++++++|-||.|.
T Consensus 985 vl~GLLlL~llv~~LwK~GFFK 1006 (1030)
T KOG3637|consen 985 VLGGLLLLALLVLLLWKCGFFK 1006 (1030)
T ss_pred HHHHHHHHHHHHHHHHhcCccc
Confidence 3344455556677789997663
No 187
>PTZ00046 rifin; Provisional
Probab=28.19 E-value=1.5e+02 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=27.4
Q ss_pred hhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHH----HhHHHHHHhh
Q 027677 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMI----ENIDKVLERG 152 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~----~ni~~~l~Rg 152 (220)
+=+|.+++.|+.|+ +....+..+=.+.+.+.+.... ++|++++-.+
T Consensus 52 DNDPeMK~Vme~F~-rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKD 101 (358)
T PTZ00046 52 DNDPEMKSVMENFD-RQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKD 101 (358)
T ss_pred CCcHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 34788999999884 4444444444444444444444 4777777553
No 188
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.19 E-value=2.3e+02 Score=20.37 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-h---hhhhHHHHHhhhhhhhhHHHH
Q 027677 127 INRIKGEMSQVRNVMIENIDKVLE-R---GDRLELLVDKTANMQGNTFRF 172 (220)
Q Consensus 127 l~~i~~~v~~v~~im~~ni~~~l~-R---ge~l~~L~~ks~~L~~~s~~f 172 (220)
+..++.+++++++=|.+.-++.-. | ..++|.|++....|......+
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~l 59 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTL 59 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443332221 1 134445555555444433333
No 189
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.73 E-value=1.3e+02 Score=20.53 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=19.8
Q ss_pred hhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 154 RLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
-||.|++|++.|...-..+-...++.|+.+
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777766666666544
No 190
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.60 E-value=2.6e+02 Score=20.87 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=41.3
Q ss_pred HHHHhccCCCC--CCCceEEEeCCEEEEEEE-eCCeEEEEEEcCCcCcchHHHHHHHHHHH
Q 027677 29 ARQILDKIPGN--NDSHVSYSQDRYIFHVKR-TDGLTVLCMADDTAGRRIPFAFLEDIHQR 86 (220)
Q Consensus 29 a~~il~ki~~~--~~~k~~~~~~~~~~~~l~-~~~~~~~~itd~~~~~~~af~fL~~i~~~ 86 (220)
.+.+..|+.+. +++-.+++-+.|..||.. ..|+=++..||+.... .-..|+.|.+.
T Consensus 45 lkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~~--ir~vLq~IYs~ 103 (140)
T KOG3368|consen 45 LKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAGS--IRDVLQYIYSH 103 (140)
T ss_pred HHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCccc--HHHHHHHHHHH
Confidence 46667788753 466678888899999764 7899999999998753 23556666663
No 191
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=27.37 E-value=2.8e+02 Score=21.08 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=31.4
Q ss_pred hHHHHHHhhhhcCCcch--hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh-HHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027677 108 SRVLSQQMEYYSDDPNA--DRINRIKGEMSQVRNVMIENIDKVLERGDRL-ELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (220)
Q Consensus 108 ~~~l~~~~~~yn~~~~~--dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l-~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
.+.+++....| .++.+ +-+..++++-.+ +-++=+++ +.+..|-+.|+..|+.|-+.-...-|.+.
T Consensus 26 K~~lkev~~~~-~~~~~~de~i~~LK~ksP~-----------L~~k~~~l~~~~k~ki~~L~peak~Fv~~li~~~~~l~ 93 (154)
T PF05823_consen 26 KAELKEVAKNY-AKFKNEDEMIAALKEKSPS-----------LYEKAEKLRDKLKKKIDKLSPEAKAFVKELIAKARSLY 93 (154)
T ss_dssp HHHHHHHHTT--------TTHHHHHHHH-HH-----------HHHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cccCCHHHHHHHHHHhCHH-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56777777777 33322 333344443333 33333222 34667788888888888776554444443
No 192
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.23 E-value=2.9e+02 Score=21.25 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.2
Q ss_pred HHHHHh
Q 027677 110 VLSQQM 115 (220)
Q Consensus 110 ~l~~~~ 115 (220)
.|++.+
T Consensus 9 ~L~~~L 14 (181)
T PF08006_consen 9 ELEKYL 14 (181)
T ss_pred HHHHHH
Confidence 333333
No 193
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=27.19 E-value=2.3e+02 Score=23.39 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=34.0
Q ss_pred cceEEEeEeCCeEEeeecCCCCCHHHHHHHHhccCCCCCCCceEEEeCCEEE
Q 027677 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIF 53 (220)
Q Consensus 2 ~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~ 53 (220)
||-|+.||.-+..+......-..+-.++..++..-. .+.+..++-++|.|
T Consensus 30 ~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eS--eN~Kyayeg~nYHw 79 (249)
T PF11675_consen 30 PIAYISVAQPTATFEHDEKKHTKYLDIINDILRDES--ENIKYAYEGGNYHW 79 (249)
T ss_pred ceeEEeccCceEEEeecCccchhHHHHHHHHHhccc--cccceeeeCCceEE
Confidence 478888887766666555544567789999997644 36666666666544
No 194
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.17 E-value=4e+02 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 027677 76 PFAFLEDIHQRFVKTY 91 (220)
Q Consensus 76 af~fL~~i~~~f~~~~ 91 (220)
+-.||+.++++|....
T Consensus 246 ~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKAL 261 (384)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4578888888887654
No 195
>COG3771 Predicted membrane protein [Function unknown]
Probab=26.96 E-value=53 Score=22.59 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCCC
Q 027677 201 IVYVVLAFVCHGLT 214 (220)
Q Consensus 201 ii~~i~~~~c~gf~ 214 (220)
+-+++-|.+||+|-
T Consensus 51 ~G~~lgwli~g~fy 64 (97)
T COG3771 51 AGFALGWLICGLFY 64 (97)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566677888773
No 196
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=26.85 E-value=1e+02 Score=27.23 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILIL 199 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~ 199 (220)
+.+|++.+++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~ 51 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFA 51 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456676666665544443
No 197
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=26.65 E-value=1.9e+02 Score=18.99 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhH
Q 027677 127 INRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQA 176 (220)
Q Consensus 127 l~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a 176 (220)
|.++..++.++.+.|.++=.=+| .++|.+.++-.++..-|..|+-++
T Consensus 19 L~~I~~~~~~i~~~ld~~~~ClL---~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 19 LEQIEEEISQIIQTLDEDDCCLL---CEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp HHHHHHHHHHHHHHTT-TT--GG---GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCceec---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554433211122 367788888888888888887654
No 198
>PHA02911 C-type lectin-like protein; Provisional
Probab=26.41 E-value=1.7e+02 Score=23.51 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=16.4
Q ss_pred HhhhhhHHHHHhhhhhhhhHHHHH
Q 027677 150 ERGDRLELLVDKTANMQGNTFRFR 173 (220)
Q Consensus 150 ~Rge~l~~L~~ks~~L~~~s~~f~ 173 (220)
+|-..++.|++++.-+.+.|.-++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQ 25 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhh
Confidence 455677888888776666666554
No 199
>PHA03164 hypothetical protein; Provisional
Probab=25.72 E-value=1.1e+02 Score=20.46 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027677 191 TVALIILILVIVYVVL 206 (220)
Q Consensus 191 ~~ii~~vv~~ii~~i~ 206 (220)
.++-++++..++|+|+
T Consensus 61 lvLtgLaIamILfiif 76 (88)
T PHA03164 61 LVLTGLAIAMILFIIF 76 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444555444
No 200
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=25.68 E-value=1.3e+02 Score=24.42 Aligned_cols=17 Identities=6% Similarity=0.390 Sum_probs=8.1
Q ss_pred HHHHHHhHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILI 198 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv 198 (220)
+||.+++|.+.++++++
T Consensus 28 ~~~~k~~r~~Al~alil 44 (218)
T PF10039_consen 28 RMWRKYKRAIALAALIL 44 (218)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554444433
No 201
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=25.62 E-value=1.1e+02 Score=21.13 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 181 STVWWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 181 r~~~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
.|.-|..+...+++++ ++++++||+
T Consensus 56 gK~~W~~fg~~~vVGv--vLlv~viwL 80 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGV--VLLVFVIWL 80 (87)
T ss_pred CcccHHHhhhHHHHHH--HHHHHHHHH
Confidence 4555677777776655 344555655
No 202
>PLN03223 Polycystin cation channel protein; Provisional
Probab=25.53 E-value=1.4e+02 Score=31.07 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=45.4
Q ss_pred hhhhHHHHHHhhhhcCCcc--------------hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhh
Q 027677 105 DEFSRVLSQQMEYYSDDPN--------------ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (220)
Q Consensus 105 ~~f~~~l~~~~~~yn~~~~--------------~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 166 (220)
.+.+..-.-+|+++-.-|. .|.|.+.++.+-+++..+.++=-++++|.+++.++++|--+|.
T Consensus 1547 ~ei~~aa~~~~~~~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~ 1622 (1634)
T PLN03223 1547 DEIDQAAHMLMDQVGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLE 1622 (1634)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445555567777633221 1677788888888999999999999999999998888876654
No 203
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=25.20 E-value=2.8e+02 Score=26.67 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027677 147 KVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVL 206 (220)
Q Consensus 147 ~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~ 206 (220)
.++.+.+.-+.+.+-++..++.|..|- .|.||.+.++.++++++++++.
T Consensus 14 ~v~~~~~G~~~m~~Ia~~I~eGA~aFL-----------~reYk~i~~~~vi~~~ll~~~~ 62 (682)
T PF03030_consen 14 WVLKQDEGNEKMQEIAAAIQEGAMAFL-----------KREYKTIAIFIVIVAILLFFLL 62 (682)
T ss_dssp HHHTS----HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333455555555555555553 2457887777776666665443
No 204
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=25.09 E-value=2.5e+02 Score=19.67 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 027677 127 INRIKGEMSQVRNVMIENIDK 147 (220)
Q Consensus 127 l~~i~~~v~~v~~im~~ni~~ 147 (220)
+..-+...++|.+-|..++|+
T Consensus 30 Ik~gq~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 30 IKDGQHDQELVNQKLDRTLDE 50 (98)
T ss_pred HHHhHhhHHHHHHHHHhhHHH
Confidence 333345556666666667776
No 205
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.07 E-value=1.2e+02 Score=19.51 Aligned_cols=13 Identities=8% Similarity=0.595 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 027677 193 ALIILILVIVYVV 205 (220)
Q Consensus 193 ii~~vv~~ii~~i 205 (220)
|++++|+++-++|
T Consensus 8 i~~v~v~Ivclli 20 (70)
T PHA02902 8 ILAVIVIIFCLLI 20 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 206
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=24.89 E-value=75 Score=26.97 Aligned_cols=26 Identities=4% Similarity=0.385 Sum_probs=21.5
Q ss_pred eCCEEEEEEEeCCeEEEEEEcCCcCc
Q 027677 48 QDRYIFHVKRTDGLTVLCMADDTAGR 73 (220)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~itd~~~~~ 73 (220)
.+|++|-|-..+++.++|+|+-++-.
T Consensus 238 i~g~ly~y~~~~~v~i~c~chg~~~~ 263 (284)
T PF07897_consen 238 IEGFLYKYGKGEEVRIVCVCHGSFLS 263 (284)
T ss_pred eeEEEEEecCCCeEEEEEEecCCCCC
Confidence 46788888778899999999988753
No 207
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=24.49 E-value=1.3e+02 Score=22.28 Aligned_cols=22 Identities=27% Similarity=0.767 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 027677 181 STVWWRNVKLTVALIILILVIV 202 (220)
Q Consensus 181 r~~~~~~~k~~~ii~~vv~~ii 202 (220)
..-||.+....+.+++++++++
T Consensus 67 ~~~~~~r~~~~~pl~aLv~gL~ 88 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAGLA 88 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 4568888887666666554433
No 208
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=23.91 E-value=1.5e+02 Score=17.17 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHhhhh
Q 027677 138 RNVMIENIDKVLERGDRLELLVDKTAN 164 (220)
Q Consensus 138 ~~im~~ni~~~l~Rge~l~~L~~ks~~ 164 (220)
.+.+.+|-+.+|...+.++.++++-+.
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIEE 35 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 345678888888888888888777653
No 209
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=23.87 E-value=2.1e+02 Score=18.52 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=18.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027677 168 NTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVV 205 (220)
Q Consensus 168 ~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i 205 (220)
+..+|-+.|++=-|.-..+-.|...+..+++-++-|+|
T Consensus 17 e~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI 54 (65)
T COG2443 17 EYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFII 54 (65)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444433433
No 210
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.82 E-value=4e+02 Score=21.62 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhh------hhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTA------NMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 198 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~------~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv 198 (220)
|.+......+|++-.-=..-++.+.+-+..|.....|.- .|+.+.-.. -=++++.-.| +.+...+.++|
T Consensus 129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~l--IeRR~~~Dk~---iF~~G~i~~~v 203 (213)
T KOG3251|consen 129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRL--IERRVREDKI---IFYGGVILTLV 203 (213)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH--HHHHHHhhHH---HHHHHHHHHHH
Confidence 677777777777665444455556665555555444433 344444333 3344444433 66667777777
Q ss_pred HHHHHHHHH
Q 027677 199 LVIVYVVLA 207 (220)
Q Consensus 199 ~~ii~~i~~ 207 (220)
++.++.-|+
T Consensus 204 ~~yl~~~wl 212 (213)
T KOG3251|consen 204 IMYLFYRWL 212 (213)
T ss_pred HHHHHHHHh
Confidence 777776664
No 211
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=23.70 E-value=1.8e+02 Score=19.22 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=15.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILILVIVYVVL 206 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~~ii~~i~ 206 (220)
-++++..|.-+++++++++++.+.+
T Consensus 11 gll~~~l~~~i~~a~~ls~~~~~~~ 35 (73)
T PF02937_consen 11 GLLAKRLKRHIVVAFVLSLGVAAAY 35 (73)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777766554443
No 212
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=23.68 E-value=1.2e+02 Score=19.80 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=6.3
Q ss_pred HHHHHHHHhHHH
Q 027677 136 QVRNVMIENIDK 147 (220)
Q Consensus 136 ~v~~im~~ni~~ 147 (220)
+.+.+|.+|++.
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 445555555554
No 213
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.68 E-value=5.5e+02 Score=23.19 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHH
Q 027677 109 RVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIE 143 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ 143 (220)
..+..+..+| .++..++..++.++++++..+.+
T Consensus 261 ~~l~~l~~~y--~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 261 KQLDALRLRY--TDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHh--cccChHHHHHHHHHHHHHHHHHh
Confidence 3444455566 24446667777777777776544
No 214
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=3.6e+02 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.389 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHh-hhhhHHHHHhhhhhhhhHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLER-GDRLELLVDKTANMQGNTF 170 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~R-ge~l~~L~~ks~~L~~~s~ 170 (220)
..|.++..-+..+|+... .+..=|++ .+.||.|.+|++.+...=.
T Consensus 218 ~NL~qis~~lg~LK~mA~-dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~ 263 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMAL-DMGSEIESQNERLDRIEDKVDRLDLRVD 263 (273)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHhHHHHHHHhhhhHHH
Confidence 334455555555555333 33333444 4788889999988665433
No 215
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.55 E-value=75 Score=25.67 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Q 027677 169 TFRFRKQARRFR-STVWWRNVKLTVALIILILVIVY 203 (220)
Q Consensus 169 s~~f~~~a~~l~-r~~~~~~~k~~~ii~~vv~~ii~ 203 (220)
..-|++..-.-+ .+|-.-.+-++|.+.++||.++|
T Consensus 113 ~~~~kk~~CEen~~K~amLIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 113 SEIFKKEICEENNNKMAMLICLIIIAVLFLICTLLF 148 (227)
T ss_pred ccccchhhhhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 344555444333 45554445444444444554444
No 216
>COG5547 Small integral membrane protein [Function unknown]
Probab=23.37 E-value=1.3e+02 Score=19.03 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=7.5
Q ss_pred HHHHhHHHHHHHHH
Q 027677 184 WWRNVKLTVALIIL 197 (220)
Q Consensus 184 ~~~~~k~~~ii~~v 197 (220)
|.+.+|+-+|-+++
T Consensus 3 flk~fkypIIgglv 16 (62)
T COG5547 3 FLKKFKYPIIGGLV 16 (62)
T ss_pred HHHHhccchHHHHH
Confidence 55666665554443
No 217
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.35 E-value=43 Score=28.35 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027677 125 DRINRIKGEMSQVRNVMIEN 144 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~n 144 (220)
+...+++.++-+.=+-|-.+
T Consensus 103 e~~~klEKel~e~~~~~fg~ 122 (295)
T TIGR01478 103 EPMSTIEKELLEKYEEMFGD 122 (295)
T ss_pred chhhHHHHHHHHHHHHHhCC
Confidence 33445555555555544433
No 218
>PRK06041 flagellar assembly protein J; Reviewed
Probab=23.27 E-value=6.2e+02 Score=23.65 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=31.0
Q ss_pred HhHHHHHHhhhhhHH-HHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHH
Q 027677 143 ENIDKVLERGDRLEL-LVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTV 192 (220)
Q Consensus 143 ~ni~~~l~Rge~l~~-L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ 192 (220)
+++-..++.|+.+++ |.++++.+.++....++++-.. -.+|-.-|-..+
T Consensus 148 ~~l~~~i~sG~~l~~fL~~e~~~~~~~~~~~~~~~le~-L~~~~E~Yvt~l 197 (553)
T PRK06041 148 DRLAYSIDSGEPLKEFLKQEQDTVMEDYKTFYERALYS-LDVWKDLYVSLL 197 (553)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 456667788988877 8888888887777666554322 134544443333
No 219
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.17 E-value=1.4e+02 Score=19.91 Aligned_cols=17 Identities=6% Similarity=0.466 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVM 141 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im 141 (220)
+|+..+|.++++++.-+
T Consensus 18 ~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 18 DKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67777777776655433
No 220
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=23.06 E-value=38 Score=26.32 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027677 193 ALIILILVIVYVVLAFVC 210 (220)
Q Consensus 193 ii~~vv~~ii~~i~~~~c 210 (220)
|++.||+++++||++++|
T Consensus 80 iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeehhhHHHHHHHhHhh
Confidence 333444444555555666
No 221
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=23.06 E-value=3.6e+02 Score=20.84 Aligned_cols=26 Identities=8% Similarity=0.247 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLE 150 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~ 150 (220)
.++.+..++..+..+.+.+.+.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
T PF00664_consen 163 KKIRKLSKKYQEANSELNSFLSESLS 188 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchh
Confidence 33344444444444444444444443
No 222
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.91 E-value=1.7e+02 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.603 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC
Q 027677 195 IILILVIVYVVLAFVCHGLTLP 216 (220)
Q Consensus 195 ~~vv~~ii~~i~~~~c~gf~~~ 216 (220)
++.++.++|++....| |++..
T Consensus 60 ~~~~~~~~y~~F~~~W-GlNY~ 80 (318)
T PF12725_consen 60 ILFFLSVLYFLFYLLW-GLNYY 80 (318)
T ss_pred HHHHHHHHHHHHHHHh-hhhcC
Confidence 3334445566666677 77664
No 223
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.86 E-value=1.9e+02 Score=25.35 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=23.5
Q ss_pred hHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHH----HHhHHHHHHhh
Q 027677 108 SRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVM----IENIDKVLERG 152 (220)
Q Consensus 108 ~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im----~~ni~~~l~Rg 152 (220)
+|.+++.|+.|+ +....+..+=.+.+.+.+... -++|++++-.+
T Consensus 57 DPeMK~Vm~nF~-rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILKD 104 (353)
T TIGR01477 57 DPEMKSVMEQFD-RQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILKD 104 (353)
T ss_pred cHHHHHHHHHHh-HHHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHHH
Confidence 678888888884 343333433333333333333 34666666543
No 224
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=22.66 E-value=1.3e+02 Score=20.59 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhc--cCCCCCCCceEEEeCCEEEEEEE--eCCeEEEEEEcCCc
Q 027677 22 ATNASAIARQILD--KIPGNNDSHVSYSQDRYIFHVKR--TDGLTVLCMADDTA 71 (220)
Q Consensus 22 ~~~~~~~a~~il~--ki~~~~~~k~~~~~~~~~~~~l~--~~~~~~~~itd~~~ 71 (220)
..+|+.+-..+-+ +++.+..-+..++.+|....-+. .+|-.|+|...+.+
T Consensus 30 ~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~l~~l~~g~~yVa~g~e~f 83 (89)
T smart00537 30 FKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKKVTSLDELEDGGSYVASGTEAF 83 (89)
T ss_pred cCCHHHHHHHHhhhcccCCCCCeeEEEcCCCCEECCHHHhCcCCEEEEEcCCcc
Confidence 4678888888777 55544358889999886554332 57888999877643
No 225
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=22.59 E-value=1.5e+02 Score=16.15 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=7.3
Q ss_pred HHHHHHHhHHHHHHHH
Q 027677 181 STVWWRNVKLTVALII 196 (220)
Q Consensus 181 r~~~~~~~k~~~ii~~ 196 (220)
|+.|++-.++..++++
T Consensus 2 r~~~~~~H~~~g~~~~ 17 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAA 17 (34)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444555444433
No 226
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=22.53 E-value=1e+02 Score=24.78 Aligned_cols=22 Identities=18% Similarity=0.581 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC
Q 027677 194 LIILILVIVYVVLAFVCHGLTL 215 (220)
Q Consensus 194 i~~vv~~ii~~i~~~~c~gf~~ 215 (220)
|.+++.+++|-|++.+|.-|+.
T Consensus 67 i~l~~fi~~yri~lpi~~~fs~ 88 (284)
T PF03317_consen 67 ISLLRFIVFYRIVLPICNLFSL 88 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788999977754
No 227
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=22.48 E-value=4.3e+02 Score=23.67 Aligned_cols=9 Identities=0% Similarity=0.280 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 027677 131 KGEMSQVRN 139 (220)
Q Consensus 131 ~~~v~~v~~ 139 (220)
+++++|+.-
T Consensus 296 ~dd~eElEM 304 (414)
T KOG2662|consen 296 EDDVEELEM 304 (414)
T ss_pred cccHHHHHH
Confidence 455555443
No 228
>PTZ00370 STEVOR; Provisional
Probab=22.45 E-value=68 Score=27.20 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDK 147 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~ 147 (220)
+...+++.++-+.=+-|-.+=..
T Consensus 102 e~k~klEKel~e~~ee~fg~~~~ 124 (296)
T PTZ00370 102 EPMSTLEKELLETYEEMFGDESD 124 (296)
T ss_pred chhHHHHHHHHHHHHHHhcCccc
Confidence 44555666666555555544333
No 229
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=22.40 E-value=1.2e+02 Score=20.88 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILIL 199 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~ 199 (220)
++.|||+++.+++++...
T Consensus 60 Rlv~RN~~ill~l~l~~~ 77 (87)
T PF05803_consen 60 RLVKRNYKILLILALSYA 77 (87)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 578899988777655443
No 230
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=22.32 E-value=2e+02 Score=17.67 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=6.2
Q ss_pred HHHHhHHHHHHHHHHH
Q 027677 184 WWRNVKLTVALIILIL 199 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~ 199 (220)
+|+.++=.+++.++++
T Consensus 40 ~l~~~~~p~~~iL~~~ 55 (64)
T smart00831 40 FLRQFHNPLIYILLAA 55 (64)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3344443333333333
No 231
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.29 E-value=1.1e+02 Score=20.87 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027677 196 ILILVIV 202 (220)
Q Consensus 196 ~vv~~ii 202 (220)
.+||+++
T Consensus 14 ~IVclli 20 (92)
T PHA02681 14 SIVCYIV 20 (92)
T ss_pred HHHHHHH
Confidence 3333333
No 232
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.29 E-value=2e+02 Score=21.87 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=7.2
Q ss_pred HHHHhHHHHHHHHHHHH
Q 027677 184 WWRNVKLTVALIILILV 200 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~~ 200 (220)
++.-+++.+++++++++
T Consensus 14 ~~~~~~~~~i~~ll~~l 30 (149)
T PF11694_consen 14 QNDYLRYILIIILLLVL 30 (149)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 233
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=22.24 E-value=3.5e+02 Score=20.41 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=33.0
Q ss_pred ceEEEeE-----eCCeEEeeecCC-CC--CHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEe
Q 027677 3 ILFSLVA-----RGSVVLAECSAT-AT--NASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRT 58 (220)
Q Consensus 3 i~Ya~Ia-----r~~~iLae~~~~-~~--~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~ 58 (220)
|-|.++| +|.++-.+|+.. .| +...+|..+|+-- .+. ..++++++++..
T Consensus 2 veyIL~AEFDid~Gp~l~hQYP~~i~g~~de~~LAelMLPDg---~h~----r~~DwTvFfL~~ 58 (145)
T PF07792_consen 2 VEYILLAEFDIDKGPVLKHQYPSPIPGLEDEHMLAELMLPDG---AHK----RSEDWTVFFLNR 58 (145)
T ss_pred eeEEEEEEEecCcCCEEEEeCCCCccCCccHHHHHHhhCCcc---ccc----ccCCEEEEEEcc
Confidence 4577777 678999999985 33 6677888888431 122 224788887764
No 234
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=22.18 E-value=2.6e+02 Score=21.10 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=26.7
Q ss_pred hhhHHHHHHhhhhcC-CcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 027677 106 EFSRVLSQQMEYYSD-DPNADRINRIKGEMSQVRNVMIENIDKVLERGDR 154 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~-~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~ 154 (220)
.|.+.++++...-+. .|.-+.+.....+++.-+.--.+-+.+.|++|+.
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 455555555543311 2444666666666666644444555666666654
No 235
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=22.10 E-value=3.2e+02 Score=19.96 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=30.0
Q ss_pred EEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 53 FHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 53 ~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
=-|++..|.-|+-+-..+- ..-+-.|++++++.|.++.-
T Consensus 71 sAYi~pSgmkf~~iH~n~s-~~N~rsF~qevHely~ktLm 109 (136)
T COG5603 71 SAYIMPSGMKFLFIHQNQS-RKNARSFLQEVHELYAKTLM 109 (136)
T ss_pred EEEEccCCceEEEEeccch-hhhHHHHHHHHHHHHHHHhh
Confidence 3477888888888775544 55688999999999987654
No 236
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.04 E-value=4.5e+02 Score=21.57 Aligned_cols=13 Identities=15% Similarity=0.186 Sum_probs=7.1
Q ss_pred CcchHHHHHHHHH
Q 027677 72 GRRIPFAFLEDIH 84 (220)
Q Consensus 72 ~~~~af~fL~~i~ 84 (220)
|....-.||+++.
T Consensus 103 P~~~~~~~l~~l~ 115 (262)
T PF14257_consen 103 PADKFDSFLDELS 115 (262)
T ss_pred CHHHHHHHHHHHh
Confidence 4444456666665
No 237
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=21.94 E-value=1.8e+02 Score=28.18 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=25.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027677 162 TANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVL 206 (220)
Q Consensus 162 s~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~ 206 (220)
++.|++-|...+..|+ -...|.||.+.++.+++.+++++++
T Consensus 70 ~~~m~~Ia~~I~eGA~----afL~rqyk~i~~~~vv~~~~l~~~~ 110 (765)
T PLN02255 70 VAKCAEIQNAISEGAT----SFLFTEYKYVGIFMVIFAAVIFVFL 110 (765)
T ss_pred CHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666655554 2344568888887777776665443
No 238
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=21.74 E-value=3e+02 Score=19.43 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=14.1
Q ss_pred hhhHHHHHHhhhhcCCcch
Q 027677 106 EFSRVLSQQMEYYSDDPNA 124 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~~~~~ 124 (220)
..+..|.+.|..| .||+.
T Consensus 37 ~~KD~I~q~m~~F-~dp~~ 54 (120)
T PRK15321 37 TLKDSIYQEMNAF-KDPNS 54 (120)
T ss_pred HHHHHHHHHHHHh-CCCCC
Confidence 4567899999999 67754
No 239
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=21.58 E-value=1.5e+02 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILIL 199 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~ 199 (220)
...|++.++++.++++++
T Consensus 25 ~~L~r~k~~Ii~~~~~~~ 42 (325)
T PRK15471 25 VQLWRGKMTIIISVIVAI 42 (325)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 456666665555444333
No 240
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=21.44 E-value=1.6e+02 Score=24.41 Aligned_cols=32 Identities=19% Similarity=0.561 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHH-HHHHHHHhCCCCC
Q 027677 184 WWRNVKLTVALIILILVIV-YVVLAFVCHGLTL 215 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~~ii-~~i~~~~c~gf~~ 215 (220)
|.|++-+.+++.+.+.+++ +..-+|+-+-++|
T Consensus 32 WRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~F 64 (292)
T KOG3950|consen 32 WRKRCLYTFVLLLMILIVVNLALTIWILKVMNF 64 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555555555544444333 2333444444555
No 241
>PRK09697 protein secretion protein GspB; Provisional
Probab=21.39 E-value=79 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh---CCCC
Q 027677 182 TVWWRNVKLTVALIILILVIVYVVLAFVC---HGLT 214 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~~ii~~i~~~~c---~gf~ 214 (220)
-||-+...-. |+.|+++.++..|...| ||..
T Consensus 18 ~~~~~~~~~T--I~~Vi~L~~~~L~~AG~~~~GGYA 51 (139)
T PRK09697 18 GIFSRQKHST--IIYVICLLLICLWFAGMVLVGGYA 51 (139)
T ss_pred chhhhhhccc--hHHHHHHHHHHHHHhcceeechhH
Confidence 4565544333 34456666666666666 5543
No 242
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.27 E-value=1.7e+02 Score=19.32 Aligned_cols=8 Identities=13% Similarity=0.621 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027677 195 IILILVIV 202 (220)
Q Consensus 195 ~~vv~~ii 202 (220)
.+++++++
T Consensus 9 ~ivl~ll~ 16 (71)
T COG3763 9 LIVLALLA 16 (71)
T ss_pred HHHHHHHH
Confidence 33333333
No 243
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.85 E-value=2.9e+02 Score=18.92 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=17.9
Q ss_pred HHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 027677 158 LVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAL 194 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii 194 (220)
|++--..+........+.=+.+++ .|-|.+++-
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~Lrk----ENrK~~~ls 73 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRK----ENRKSMLLS 73 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH----hhhhhHHHH
Confidence 445555555566666666666654 345554443
No 244
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=20.81 E-value=96 Score=25.10 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCC---CCCCceEEEeCCEEEEEEEeCCeEE--EEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 25 ASAIARQILDKIPG---NNDSHVSYSQDRYIFHVKRTDGLTV--LCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 25 ~~~~a~~il~ki~~---~~~~k~~~~~~~~~~~~l~~~~~~~--~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
+.......|+++.. |.+..+-+..|... +....=.+.. +|.++++.. |..|-+-..+.....+
T Consensus 11 Y~~f~~ryL~kL~~~s~~~n~~C~I~IG~I~-g~~k~C~v~V~N~C~sna~~s----f~lli~a~~Et~~~Lp 78 (215)
T PHA02947 11 YNLFIERYLQNLSLYSVPTNTTCGIHIGEIK-GQFKRCKLRIINKCLNNKRLS----FTLLIKTFKEVISTLP 78 (215)
T ss_pred HHHHHHHHHHHHHhccCcccccccEEEeeee-eecCCceEEEEEhhcCCHHHH----HHHHHHHHHHHHHhCC
Confidence 45556666666543 34556666666544 3322212333 455555444 4444444444444443
No 245
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.68 E-value=1.3e+02 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=13.0
Q ss_pred HHHHHhccCCCCCCCceEEEeCCEEEEEEE
Q 027677 28 IARQILDKIPGNNDSHVSYSQDRYIFHVKR 57 (220)
Q Consensus 28 ~a~~il~ki~~~~~~k~~~~~~~~~~~~l~ 57 (220)
.-..++++.+|--+...+-..|++.+||-+
T Consensus 40 ~~~~lld~~~~f~~~eit~~~Ds~vIsy~i 69 (434)
T COG4499 40 LLAELLDKSPPFIVAEITEDNDSFVISYPI 69 (434)
T ss_pred HHHHHhccCCCccceeecccCceeEEEecC
Confidence 445566665431122222333455555543
No 246
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=20.64 E-value=1.9e+02 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027677 176 ARRFRSTVWWRNVKLTVALIILILVIV 202 (220)
Q Consensus 176 a~~l~r~~~~~~~k~~~ii~~vv~~ii 202 (220)
+.+-+--.||..+.+++++++.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLG 235 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444579999998888777655444
No 247
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.48 E-value=4.6e+02 Score=21.06 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=2.9
Q ss_pred Hhhhhhhh
Q 027677 160 DKTANMQG 167 (220)
Q Consensus 160 ~ks~~L~~ 167 (220)
+.-+.++.
T Consensus 146 ~~l~~~~~ 153 (206)
T PRK10884 146 NQLIVAQK 153 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 248
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=20.46 E-value=1.9e+02 Score=19.03 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 027677 199 LVIVYVVLAFV 209 (220)
Q Consensus 199 ~~ii~~i~~~~ 209 (220)
.+++|+|++++
T Consensus 49 ~ii~Yiia~~i 59 (70)
T COG1983 49 GIIAYIIAALI 59 (70)
T ss_pred HHHHHHHHHHH
Confidence 34556665544
No 249
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=20.35 E-value=2.9e+02 Score=20.88 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVM 141 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im 141 (220)
..+..+.+.+++-+..+
T Consensus 66 ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 66 EEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 250
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=20.32 E-value=3.9e+02 Score=20.16 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=13.6
Q ss_pred EEEcCCcCcch-----HHHHHHHHHHHHHhh
Q 027677 65 CMADDTAGRRI-----PFAFLEDIHQRFVKT 90 (220)
Q Consensus 65 ~itd~~~~~~~-----af~fL~~i~~~f~~~ 90 (220)
|.+|++++..- .-.||.+-...|...
T Consensus 7 ~~~de~~G~~CPTgC~i~~~L~k~~~~v~~~ 37 (146)
T PF08702_consen 7 CCADEDFGSYCPTGCGIQDFLDKYERDVDKD 37 (146)
T ss_dssp ECSSTTTTEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred cccCccccCCCCCcchHHHHHHHHccchHHH
Confidence 44555554322 246666666666543
No 251
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=5.5e+02 Score=21.93 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=18.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Q 027677 168 NTFRFRKQARRFRSTVWWRNV---KLTVALIILILVIVYVVLAF 208 (220)
Q Consensus 168 ~s~~f~~~a~~l~r~~~~~~~---k~~~ii~~vv~~ii~~i~~~ 208 (220)
.+.---..|...=++.| .++ ||.++=++.|++++|++|+.
T Consensus 266 ds~lnI~gA~~ellKy~-e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 266 DSDLNIEGAHSELLKYF-ERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred hhhhhhHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHHHHH
Confidence 34333445555554544 443 44444444444445555544
No 252
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=20.24 E-value=1.3e+02 Score=17.23 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027677 182 TVWWRNVKLTVALIILIL 199 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~vv~ 199 (220)
+.+.-+.+.++++.++++
T Consensus 18 ~eCCf~lq~Wv~v~l~v~ 35 (38)
T PF10853_consen 18 KECCFRLQIWVIVLLAVL 35 (38)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 345556666766555444
No 253
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.06 E-value=1.2e+02 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027677 190 LTVALIILILVIVYVVLAFVC 210 (220)
Q Consensus 190 ~~~ii~~vv~~ii~~i~~~~c 210 (220)
+++.+.+-.+++.|+|++++=
T Consensus 67 lii~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 67 LIIVLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred HHHHHHHHHHHHHHHHHheee
Confidence 334444444556677766543
No 254
>PF13974 YebO: YebO-like protein
Probab=20.03 E-value=73 Score=21.57 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027677 199 LVIVYVVLAF 208 (220)
Q Consensus 199 ~~ii~~i~~~ 208 (220)
+++.+++|.+
T Consensus 8 ~lv~livWFF 17 (80)
T PF13974_consen 8 LLVGLIVWFF 17 (80)
T ss_pred HHHHHHHHHH
Confidence 3333444443
Done!