Query 027677
Match_columns 220
No_of_seqs 150 out of 1000
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 23:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 6.8E-60 2.3E-64 373.7 4.7 188 1-189 2-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 3.2E-50 1.1E-54 320.6 12.3 184 3-187 3-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 1.9E-38 6.6E-43 251.9 6.4 173 1-181 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 4.1E-34 1.4E-38 221.9 15.2 119 1-120 54-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 8.6E-32 2.9E-36 187.5 12.3 88 123-210 3-90 (91)
6 2vx8_A Nucleoporin-like protei 100.0 5.2E-30 1.8E-34 198.2 13.5 120 1-121 44-163 (169)
7 2kog_A Vesicle-associated memb 100.0 3.5E-31 1.2E-35 192.6 4.5 91 121-211 29-119 (119)
8 2nps_A VAMP-4, vesicle-associa 99.9 2.5E-25 8.4E-30 149.1 5.6 71 121-191 4-74 (74)
9 1sfc_A VAMP 2, protein (synapt 99.9 1.3E-24 4.6E-29 152.2 9.2 72 120-191 25-96 (96)
10 3bw6_A Synaptobrevin homolog Y 99.9 6.5E-24 2.2E-28 160.5 12.6 121 1-126 5-144 (144)
11 1l4a_A Synaptobrevin; snare, s 99.9 5.1E-25 1.7E-29 149.7 4.6 71 120-190 10-80 (80)
12 1n7s_A Vesicle-associated memb 99.9 8.1E-22 2.8E-26 128.0 8.1 63 122-184 1-63 (63)
13 3b5n_A Synaptobrevin homolog 1 99.9 2E-21 6.9E-26 125.2 7.9 60 125-184 2-61 (61)
14 1gl2_A Endobrevin; membrane pr 99.8 1.5E-19 5.1E-24 117.8 6.4 61 121-181 5-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 4.8E-17 1.6E-21 104.5 6.8 59 125-183 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.2 1E-09 3.5E-14 63.0 -8.7 33 121-153 5-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.2 1.1E-06 3.8E-11 73.8 4.6 32 124-155 279-310 (310)
18 3hd7_B Syntaxin-1A; membrane p 97.8 0.0018 6.1E-08 45.8 14.2 53 109-167 11-63 (109)
19 2fh5_A Signal recognition part 97.7 0.00065 2.2E-08 52.4 11.3 110 4-116 13-135 (185)
20 3hd7_A Vesicle-associated memb 94.9 0.54 1.9E-05 31.7 11.8 52 126-177 13-64 (91)
21 2j3w_A Sedlin, trafficking pro 94.8 0.72 2.5E-05 33.7 11.9 75 43-118 64-139 (142)
22 2j3t_C Trafficking protein par 94.4 0.79 2.7E-05 33.7 11.3 116 1-118 1-137 (145)
23 2fz0_A R-snare NYV1P, V-snare 93.5 0.43 1.5E-05 34.4 7.8 61 25-85 46-114 (149)
24 3tjz_C Coatomer subunit zeta-1 92.0 2 6.8E-05 31.8 10.2 87 3-91 13-105 (153)
25 1w63_Q Adapter-related protein 90.6 4 0.00014 30.2 11.5 49 44-92 48-96 (158)
26 2vgl_S AP-2 complex subunit si 89.3 3.7 0.00013 29.7 9.4 50 43-92 47-96 (142)
27 2j3t_D Trafficking protein par 88.3 5.9 0.0002 31.1 10.4 89 30-120 119-211 (219)
28 2kog_A Vesicle-associated memb 87.6 0.16 5.6E-06 36.1 1.0 56 125-180 40-95 (119)
29 1w63_M Adaptor-related protein 85.9 6.1 0.00021 34.0 10.3 91 1-92 1-96 (423)
30 2ww9_B Protein transport prote 85.8 2.7 9.4E-05 27.5 6.0 44 163-206 26-69 (80)
31 3cue_A Transport protein parti 85.8 6 0.00021 31.0 9.1 77 42-118 118-218 (219)
32 1jth_B Syntaxin 1A; coiled-coi 84.2 6.3 0.00021 25.3 7.6 42 125-166 10-51 (77)
33 3cue_C Transport protein parti 83.5 4.4 0.00015 30.1 7.2 87 30-118 52-156 (159)
34 2vgl_M AP-2 complex subunit MU 82.3 20 0.00068 30.9 12.0 49 44-92 46-94 (435)
35 1rh5_B Preprotein translocase 81.1 1 3.4E-05 29.2 2.5 52 154-205 4-55 (74)
36 3hd7_B Syntaxin-1A; membrane p 77.6 15 0.0005 25.3 12.2 9 138-146 47-55 (109)
37 2k1a_A Integrin alpha-IIB; sin 75.6 6 0.00021 22.5 4.4 17 197-213 21-37 (42)
38 1t3j_A Mitofusin 1; coiled coi 75.6 12 0.00042 25.2 6.6 44 126-169 37-80 (96)
39 2knc_A Integrin alpha-IIB; tra 75.4 2.3 8E-05 25.6 2.7 19 195-213 21-39 (54)
40 2l8s_A Integrin alpha-1; trans 72.7 3.9 0.00013 24.6 3.2 19 195-213 18-36 (54)
41 2nps_B Syntaxin 13, vesicle-as 71.7 16 0.00054 22.9 7.4 43 125-167 6-48 (71)
42 2wwb_B SEC61gamma, protein tra 71.7 0.72 2.5E-05 29.3 -0.2 52 156-207 5-56 (68)
43 1urq_A M-tomosyn isoform; tran 68.9 18 0.00061 22.4 7.1 50 125-174 11-60 (63)
44 3b5n_B Protein SSO1; snare com 64.2 23 0.0008 22.0 8.3 43 125-167 10-52 (69)
45 1txp_A HnRNP C, heterogeneous 62.7 6.4 0.00022 20.0 2.3 24 129-156 3-26 (28)
46 3mp7_B Preprotein translocase 61.8 3.9 0.00013 25.3 1.7 48 158-205 4-51 (61)
47 1n7s_A Vesicle-associated memb 61.3 25 0.00086 21.4 8.0 52 132-183 4-55 (63)
48 1n7s_B Syntaxin 1A; neuronal s 61.0 27 0.00091 21.6 6.9 43 125-167 12-54 (68)
49 1sfc_A VAMP 2, protein (synapt 57.8 39 0.0013 22.6 8.9 48 129-176 41-88 (96)
50 1gl2_B Syntaxin 7; membrane pr 57.2 31 0.0011 21.2 7.0 43 125-167 9-51 (65)
51 3b5n_A Synaptobrevin homolog 1 56.3 31 0.0011 20.9 8.0 51 133-183 3-53 (61)
52 2zxe_G FXYD10, phospholemman-l 50.2 24 0.00082 22.5 4.0 28 185-213 16-43 (74)
53 1pi7_A VPU protein, U ORF prot 50.0 20 0.00068 19.6 3.1 17 192-208 7-23 (36)
54 1spf_A Pulmonary surfactant-as 49.8 28 0.00094 18.4 3.9 20 188-207 10-29 (35)
55 3h3g_B Parathyroid hormone-rel 49.1 13 0.00043 18.3 2.0 13 176-188 4-16 (24)
56 4a4y_A Protein MXIG; protein b 48.4 37 0.0013 23.1 5.0 42 3-57 86-127 (146)
57 1l4a_C S-SNAP25 fusion protein 47.7 55 0.0019 21.3 5.9 58 110-168 13-70 (83)
58 1ccd_A Clara cell 17 KD protei 46.1 27 0.00092 22.4 3.9 43 109-151 21-64 (77)
59 2ygg_A Sodium/hydrogen exchang 44.1 25 0.00087 22.2 3.4 23 131-153 6-28 (70)
60 1sfc_B Protein (syntaxin 1A), 44.1 62 0.0021 20.8 8.2 43 125-167 21-63 (83)
61 1utg_A Uteroglobin; steroid bi 40.3 25 0.00084 22.1 3.0 42 110-151 20-62 (70)
62 3lcn_C MRNA transport factor G 39.8 38 0.0013 17.2 3.1 22 123-144 4-25 (29)
63 3fym_A Putative uncharacterize 39.0 6.4 0.00022 27.8 0.0 24 184-207 101-124 (130)
64 2nps_A VAMP-4, vesicle-associa 38.3 73 0.0025 20.0 5.9 50 127-176 17-66 (74)
65 2h8b_B Insulin-like 3; insulin 38.1 26 0.0009 18.4 2.3 13 205-217 17-29 (31)
66 4ev6_A Magnesium transport pro 36.0 1.8E+02 0.006 23.7 15.7 11 205-216 294-304 (339)
67 1n7s_C SNAP-25A; neuronal snar 35.4 87 0.003 20.0 7.6 46 123-168 21-66 (79)
68 1l4a_A Synaptobrevin; snare, s 34.7 76 0.0026 20.3 4.8 50 126-175 23-72 (80)
69 2jp3_A FXYD domain-containing 34.3 52 0.0018 20.5 3.6 16 185-200 14-29 (67)
70 2iub_A CORA, divalent cation t 33.9 2E+02 0.0068 23.7 15.1 18 125-142 221-238 (363)
71 1nhl_A Synaptosomal-associated 32.8 76 0.0026 18.6 6.8 39 130-168 5-43 (54)
72 1dn1_B Syntaxin 1A, syntaxin b 31.5 38 0.0013 27.1 3.5 42 125-166 200-241 (267)
73 4ftx_A Protein SLM4; EGO compl 31.3 1.6E+02 0.0053 21.7 6.3 42 51-92 106-158 (170)
74 1afo_A Glycophorin A; integral 30.2 73 0.0025 17.6 3.6 19 189-207 11-29 (40)
75 1gl2_A Endobrevin; membrane pr 30.2 95 0.0033 18.9 6.9 52 131-182 8-59 (65)
76 1iij_A ERBB-2 receptor protein 28.9 53 0.0018 17.7 2.6 17 190-206 7-23 (35)
77 3f4m_A Tumor necrosis factor, 28.5 1.7E+02 0.0059 21.5 6.3 74 69-153 86-160 (161)
78 2jo1_A Phospholemman; FXYD1, N 28.1 72 0.0025 20.1 3.5 15 185-199 13-27 (72)
79 3b5n_C Protein transport prote 27.8 1.1E+02 0.0039 19.0 8.2 53 128-180 15-67 (70)
80 3t97_C Nuclear pore glycoprote 27.5 71 0.0024 19.7 3.5 24 148-171 7-30 (64)
81 3vmt_A Monofunctional glycosyl 26.8 33 0.0011 27.5 2.3 25 178-202 26-50 (263)
82 2fhw_B Relaxin 3 (prorelaxin H 26.4 48 0.0016 16.8 2.0 11 205-215 17-27 (27)
83 2jqq_A Conserved oligomeric go 25.8 25 0.00085 26.8 1.3 87 71-166 12-112 (204)
84 3n2f_G Na+/K+ ATPase gamma sub 25.8 55 0.0019 17.1 2.3 19 185-203 7-25 (31)
85 1j3w_A Giding PROTEIN-MGLB; gl 24.9 2E+02 0.0069 20.9 11.1 82 5-87 31-129 (163)
86 2kfe_A Meucin-24; alpha-helix, 24.2 56 0.0019 16.3 2.0 17 126-142 6-22 (26)
87 1utr_A Uteroglobin; clara cell 23.5 36 0.0012 22.7 1.7 42 110-151 41-83 (96)
88 1zkr_A Major allergen I polype 23.4 1E+02 0.0034 22.6 4.1 42 110-151 21-64 (153)
89 2cly_A ATP synthase B chain, m 22.8 2.6E+02 0.009 21.5 7.6 33 131-163 90-122 (214)
90 2pjw_V Vacuolar protein sortin 22.4 1.7E+02 0.0059 19.3 7.0 40 124-163 32-71 (91)
91 1f5n_A Interferon-induced guan 22.3 3.1E+02 0.011 24.5 8.0 18 105-122 434-451 (592)
92 2oo9_A E3 ubiquitin-protein li 21.7 44 0.0015 19.2 1.5 40 106-145 3-43 (46)
93 2p22_A Suppressor protein STP2 21.5 2.6E+02 0.0087 20.8 9.3 81 108-190 44-166 (174)
94 2kmf_A Photosystem II 11 kDa p 21.4 1.7E+02 0.0057 20.3 4.8 63 76-139 43-109 (115)
95 1bm4_A Protein (moloney murine 20.9 91 0.0031 16.4 2.5 18 72-89 11-28 (32)
96 3kf9_B MLCK2, myosin light cha 20.5 30 0.001 16.6 0.5 7 182-188 2-8 (22)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=6.8e-60 Score=373.74 Aligned_cols=188 Identities=37% Similarity=0.677 Sum_probs=151.5
Q ss_pred CcceEEEeEeCCeEEeeecCCCCCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHH
Q 027677 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (220)
Q Consensus 1 M~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 80 (220)
|||+|||||||++|||||+..+|||..+|+.+|+++| ++++|.++++|+|.|||+.++|++|+|+||++||+++||.||
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip-~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCC-SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCC-CCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q 027677 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVD 160 (220)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ 160 (220)
++|+++|...|+..+.++.+++++.+|.+.|+++|++|++.+..|++.+++.+|+||++||.+||+++|+|||+||.|++
T Consensus 81 ~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ 160 (189)
T 4b93_A 81 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLID 160 (189)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEE
T ss_pred HHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999988778889999999999999999999766677999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHHhH
Q 027677 161 KTANMQGNTFRFRKQARRFRSTVWWRNVK 189 (220)
Q Consensus 161 ks~~L~~~s~~f~~~a~~l~r~~~~~~~k 189 (220)
||++|+.+|..|+++|++++|+|||+|+|
T Consensus 161 ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 161 KTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp TTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=3.2e-50 Score=320.60 Aligned_cols=184 Identities=23% Similarity=0.454 Sum_probs=116.2
Q ss_pred ceEEEeEeC--CeEEeeecCCC---CC----HHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCc
Q 027677 3 ILFSLVARG--SVVLAECSATA---TN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR 73 (220)
Q Consensus 3 i~Ya~Iar~--~~iLae~~~~~---~~----~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~ 73 (220)
|+|+||||+ ++|||+|++.+ |+ |.++++.++++++++.++|.+++.|+|.|||+.++|++|+||||++||+
T Consensus 3 i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~ 82 (196)
T 2nut_C 3 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPK 82 (196)
T ss_dssp CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcch
Confidence 899999999 79999999843 44 8899999999999557899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhchhhhh-cccCCCchhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 027677 74 RIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERG 152 (220)
Q Consensus 74 ~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rg 152 (220)
++||.||++|+++|...|+..+.+ +.++++. +|++.|+++|++|++.+..|++.+++.+|+||++||.+||+++|+||
T Consensus 83 r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rg 161 (196)
T 2nut_C 83 KLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRG 161 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999866544 4688885 99999999999996545679999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q 027677 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRN 187 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~ 187 (220)
|+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 162 e~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 162 EALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp -----------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-38 Score=251.90 Aligned_cols=173 Identities=23% Similarity=0.404 Sum_probs=147.9
Q ss_pred CcceEEEeEeCC----eEEeeecCCC----------CCHH-HHHHHHhccCCCCCCCceEEEeCCEEEE-EEEeCCeEEE
Q 027677 1 MAILFSLVARGS----VVLAECSATA----------TNAS-AIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL 64 (220)
Q Consensus 1 M~i~Ya~Iar~~----~iLae~~~~~----------~~~~-~~a~~il~ki~~~~~~k~~~~~~~~~~~-~l~~~~~~~~ 64 (220)
|.|++.+|.+.+ .+|+...+-+ ++|. .+++.+++++++ ++|.++++|+|.|| |+.++|++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 778999999852 5666655522 3343 466799999885 78999999999999 9999999999
Q ss_pred EEEcCCcCcchHHHHHHHHHHHHHhhhchhhh-hc--ccCCCchhhhHHHHHHhhhhcCCcc-hhHHHHHHHHHHHHHHH
Q 027677 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRAVL-SA--QAYGMNDEFSRVLSQQMEYYSDDPN-ADRINRIKGEMSQVRNV 140 (220)
Q Consensus 65 ~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~-~~--~~~~~~~~f~~~l~~~~~~yn~~~~-~dkl~~i~~~v~~v~~i 140 (220)
|+||++||+++||.||++|+++|.+.|+...+ +. .++ .| +.|+++|.+|+ ||. .|++.+++.+|+||++|
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~----~f-~~l~~~m~~Y~-dp~~~d~l~~~q~el~evk~i 153 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI----HY-TALDGHLSRYQ-NPREADPMSKVQAELDETKII 153 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC----CC-CTHHHHHHHTT-SGGGCCCCHHHHHHHHTCCCE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc----cc-HHHHHHHHHhC-CchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985432 22 233 46 67899999995 565 49999999999999999
Q ss_pred HHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027677 141 MIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (220)
Q Consensus 141 m~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
|.+||+++|+|||+||+|++||++|+.+|..|+++|+++++
T Consensus 154 M~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 154 LHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp EESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999985
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=221.86 Aligned_cols=119 Identities=40% Similarity=0.699 Sum_probs=114.8
Q ss_pred CcceEEEeEeCCeEEeeecCCCCCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHH
Q 027677 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (220)
Q Consensus 1 M~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 80 (220)
|+|+|||||||++|||||+..+|||..+|+.+|+|++ +.++|.+++.++|.|||+.++|++|+|+||.+||+++||.||
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip-~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSC-SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCC-CCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 9999999999999999999999999999999999999 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcC
Q 027677 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120 (220)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~ 120 (220)
++|+++|.+.|+..+.++.+|+++.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999998777889999999999999999999964
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.97 E-value=8.6e-32 Score=187.46 Aligned_cols=88 Identities=25% Similarity=0.603 Sum_probs=85.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027677 123 NADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIV 202 (220)
Q Consensus 123 ~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii 202 (220)
.+|++.+++++++||+++|.+||+++++|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027677 203 YVVLAFVC 210 (220)
Q Consensus 203 ~~i~~~~c 210 (220)
|+|++++|
T Consensus 83 ~ii~~~~~ 90 (91)
T 3hd7_A 83 IIIIVYFS 90 (91)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99999998
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=5.2e-30 Score=198.22 Aligned_cols=120 Identities=40% Similarity=0.699 Sum_probs=108.0
Q ss_pred CcceEEEeEeCCeEEeeecCCCCCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHH
Q 027677 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (220)
Q Consensus 1 M~i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 80 (220)
|+|+|+||+||++|||||++..+||..+++.++++++ +.++|.+++.|+|.|||+.+||++|+||||++||+++||.||
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~-~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSC-SSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCC-CCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 9999999999999999999999999999999999999 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCC
Q 027677 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDD 121 (220)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~ 121 (220)
++|+++|.+.|+..+.++.+++++.+|++.|++.|++||++
T Consensus 123 edI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 99999999999877766678999889999999999999654
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=3.5e-31 Score=192.63 Aligned_cols=91 Identities=24% Similarity=0.568 Sum_probs=88.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027677 121 DPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILV 200 (220)
Q Consensus 121 ~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ 200 (220)
+++.|++.+++.+++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++
T Consensus 29 ~~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~i 108 (119)
T 2kog_A 29 LTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAI 108 (119)
T ss_dssp SSSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 027677 201 IVYVVLAFVCH 211 (220)
Q Consensus 201 ii~~i~~~~c~ 211 (220)
++|+|++++|.
T Consensus 109 ii~iIi~~~c~ 119 (119)
T 2kog_A 109 ILIIIIVYFST 119 (119)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhhhheeC
Confidence 99999999993
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.91 E-value=2.5e-25 Score=149.11 Aligned_cols=71 Identities=37% Similarity=0.782 Sum_probs=62.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHH
Q 027677 121 DPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLT 191 (220)
Q Consensus 121 ~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~ 191 (220)
+|..|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 4 ~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 4 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp --CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999974
No 9
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.91 E-value=1.3e-24 Score=152.20 Aligned_cols=72 Identities=28% Similarity=0.600 Sum_probs=66.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHH
Q 027677 120 DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLT 191 (220)
Q Consensus 120 ~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~ 191 (220)
+++..|+|.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 25 ~~~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 25 NLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 356779999999999999999999999999999999999999999999999999999999999999999975
No 10
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=6.5e-24 Score=160.47 Aligned_cols=121 Identities=19% Similarity=0.306 Sum_probs=99.8
Q ss_pred CcceEEEeEeC----CeEEeeecCCC----------CCH-HHHHHHHhccCCCCCCCceEEEeCCEEEEEE-EeCCeEEE
Q 027677 1 MAILFSLVARG----SVVLAECSATA----------TNA-SAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTVL 64 (220)
Q Consensus 1 M~i~Ya~Iar~----~~iLae~~~~~----------~~~-~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l-~~~~~~~~ 64 (220)
|.|+|++|+|+ .++|+++++.+ ++| ..+++.+++|+++ ++|.++++++|.|||+ .++|++|+
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence 77999999998 68999999865 455 6789999999986 6899999999999999 78999999
Q ss_pred EEEcCCcCcchHHHHHHHHHHHHHhhhchh-hhhc-ccCCCchhhhHHHHHHhhhhcCCcch-hH
Q 027677 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSA-QAYGMNDEFSRVLSQQMEYYSDDPNA-DR 126 (220)
Q Consensus 65 ~itd~~~~~~~af~fL~~i~~~f~~~~~~~-~~~~-~~~~~~~~f~~~l~~~~~~yn~~~~~-dk 126 (220)
||||++||+++||.||++|.++|.+.|+.. +.++ .+++ ...| +.|++.|.+| +||.+ |+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 999999999999999999999999999866 5543 3111 3355 7899999999 56643 53
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.91 E-value=5.1e-25 Score=149.70 Aligned_cols=71 Identities=27% Similarity=0.595 Sum_probs=62.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHH
Q 027677 120 DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 190 (220)
Q Consensus 120 ~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~ 190 (220)
+.+..|+|.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999985
No 12
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.86 E-value=8.1e-22 Score=128.01 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027677 122 PNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (220)
Q Consensus 122 ~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
|..|++.+++.++++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+||
T Consensus 1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 1 GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 567999999999999999999999999999999999999999999999999999999999998
No 13
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.85 E-value=2e-21 Score=125.19 Aligned_cols=60 Identities=33% Similarity=0.627 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.79 E-value=1.5e-19 Score=117.83 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=52.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027677 121 DPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (220)
Q Consensus 121 ~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
.+..|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|
T Consensus 5 ~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 5 SAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.69 E-value=4.8e-17 Score=104.53 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
.++..++.++++|+++|.+|++++++|||+|+.|++||++|..+|..|++.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999875
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.25 E-value=1e-09 Score=62.98 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 027677 121 DPNADRINRIKGEMSQVRNVMIENIDKVLERGD 153 (220)
Q Consensus 121 ~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge 153 (220)
.+..|++.+++.+|+||++||.+||+++|+||+
T Consensus 5 ~~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 5 LTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 345699999999999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.19 E-value=1.1e-06 Score=73.82 Aligned_cols=32 Identities=34% Similarity=0.808 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 027677 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRL 155 (220)
Q Consensus 124 ~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l 155 (220)
.|++.++|++++||++||.+|||++++|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999986
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.76 E-value=0.0018 Score=45.78 Aligned_cols=53 Identities=9% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 109 RVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+..+-++. +.+.++++.+.|+.+++.+==..+-+.|+.+|.+++..++-..
T Consensus 11 ~~l~~i~eR~------~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 11 QALSEIETRH------SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555554 5688999999999999888777888999999998877766443
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.66 E-value=0.00065 Score=52.41 Aligned_cols=110 Identities=16% Similarity=0.321 Sum_probs=73.1
Q ss_pred eEEEeEeCCeEEeeecCCCC----CHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeC--CeEEEEEEcCCcCcchHH
Q 027677 4 LFSLVARGSVVLAECSATAT----NASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIPF 77 (220)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~----~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~--~~~~~~itd~~~~~~~af 77 (220)
+.+.+.+|+.||.+|+.... ....+++.+|=.=. .+..++++|+|...+..+| +++|+++-..-.+-..+=
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 57888999999999954332 24667777753322 2234688899999887754 799999988888878888
Q ss_pred HHHHHHHHHHHhhhchhhhh---c----ccCCCchhhhHHHHHHhh
Q 027677 78 AFLEDIHQRFVKTYGRAVLS---A----QAYGMNDEFSRVLSQQME 116 (220)
Q Consensus 78 ~fL~~i~~~f~~~~~~~~~~---~----~~~~~~~~f~~~l~~~~~ 116 (220)
.||+.++..|...|+..-.. . ....+...|...+++.-.
T Consensus 90 ~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~ 135 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEE 135 (185)
T ss_dssp HHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHH
Confidence 99999999999999644221 1 122344556655555443
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.85 E-value=0.54 Score=31.69 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHH
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR 177 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~ 177 (220)
.+..++.-+.+.-+.+.++=+++=+=.++-++|.+.|.....+|...+++.-
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmw 64 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 64 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555666777777777777765543
No 21
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=94.81 E-value=0.72 Score=33.69 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=49.6
Q ss_pred ceEEEeCCEEEE-EEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhh
Q 027677 43 HVSYSQDRYIFH-VKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYY 118 (220)
Q Consensus 43 k~~~~~~~~~~~-~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y 118 (220)
..+...++|..| |....|+=|+.++|+. .....-.||++|.+.|....-+..-....+=-...|+..+++++++|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHh
Confidence 355566777766 6678899999999974 23456789999998776533222111111112357999999999887
No 22
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=94.43 E-value=0.79 Score=33.66 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=70.0
Q ss_pred CcceEEEeEeC-CeEEeeecCCC----C-CHHH----------HHHHHhccCCC--CCCCceEEEeCCEEEE-EEEeCCe
Q 027677 1 MAILFSLVARG-SVVLAECSATA----T-NASA----------IARQILDKIPG--NNDSHVSYSQDRYIFH-VKRTDGL 61 (220)
Q Consensus 1 M~i~Ya~Iar~-~~iLae~~~~~----~-~~~~----------~a~~il~ki~~--~~~~k~~~~~~~~~~~-~l~~~~~ 61 (220)
|++++..|... +.+|.+..-.. + +.++ -...+.+++.+ +.....+++.+.|..| |....|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 77777766654 57777654321 1 1111 12444556553 2345678888888777 5567899
Q ss_pred EEEEEEcCCcCcchHHHHHHHHH-HHHHhhh-chhhhhcccCCCchhhhHHHHHHhhhh
Q 027677 62 TVLCMADDTAGRRIPFAFLEDIH-QRFVKTY-GRAVLSAQAYGMNDEFSRVLSQQMEYY 118 (220)
Q Consensus 62 ~~~~itd~~~~~~~af~fL~~i~-~~f~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~y 118 (220)
=|+.++|+..+ -.-.||.+|. +.|.... .+..-....+=-...|+..++.+++++
T Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 81 KVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred EEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence 99999998755 3568899999 5665421 122111111112357999999999876
No 23
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.43 Score=34.41 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=44.9
Q ss_pred HHHH-HHHHhccCCCCCCCc---eEEE-eCCEEEEEEE---eCCeEEEEEEcCCcCcchHHHHHHHHHH
Q 027677 25 ASAI-ARQILDKIPGNNDSH---VSYS-QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (220)
Q Consensus 25 ~~~~-a~~il~ki~~~~~~k---~~~~-~~~~~~~~l~---~~~~~~~~itd~~~~~~~af~fL~~i~~ 85 (220)
|..+ ...+++++-+-...| ++.. .|||-.+|.. +++.+|+|.|..+.|+-++...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4443 345577776433333 3333 5899999986 4578999999999999999999999975
No 24
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=92.04 E-value=2 Score=31.76 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=61.1
Q ss_pred ceEEEeE--eCCeEEeeecCCC-CCH---HHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchH
Q 027677 3 ILFSLVA--RGSVVLAECSATA-TNA---SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIP 76 (220)
Q Consensus 3 i~Ya~Ia--r~~~iLae~~~~~-~~~---~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~a 76 (220)
|....|- +|..+|+-|=... .+. ....+.+.+++.+ .+ .-.+..+++.+.|....++.|+++++.+...-..
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 4444554 3457777665532 222 2234455555443 22 3577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027677 77 FAFLEDIHQRFVKTY 91 (220)
Q Consensus 77 f~fL~~i~~~f~~~~ 91 (220)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988887666
No 25
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.63 E-value=4 Score=30.16 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=42.6
Q ss_pred eEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
-.++.+++.|-|...+++.|+++++.+...-..+.||..+.+.+..-++
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4677899999999899999999999999999999999998887776555
No 26
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=89.26 E-value=3.7 Score=29.68 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=42.7
Q ss_pred ceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 43 HVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 43 k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
--.++.+++.|-|...+++.|+++++.+...-..+.||..+.+.+..-++
T Consensus 47 ~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 47 TNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34677889999999889999999999999999999999998887775554
No 27
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=88.27 E-value=5.9 Score=31.05 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=58.3
Q ss_pred HHHhccCCCC--CCCceEEEeCCEEEE-EEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhh-chhhhhcccCCCch
Q 027677 30 RQILDKIPGN--NDSHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLSAQAYGMND 105 (220)
Q Consensus 30 ~~il~ki~~~--~~~k~~~~~~~~~~~-~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~-~~~~~~~~~~~~~~ 105 (220)
..+-+++.|. ...-..++.+.|..| |....|+-|+.++|+. ....-.||++|.+.|.... .+..-....+=-..
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~ 196 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCE 196 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCH
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccchH
Confidence 3344566531 234567888888877 5667899999999987 4456789999997766431 22221111111235
Q ss_pred hhhHHHHHHhhhhcC
Q 027677 106 EFSRVLSQQMEYYSD 120 (220)
Q Consensus 106 ~f~~~l~~~~~~yn~ 120 (220)
.|+..++.+++.+++
T Consensus 197 ~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 197 LFDQNLKLALEVAEK 211 (219)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 799999999999854
No 28
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=87.60 E-value=0.16 Score=36.13 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~ 180 (220)
+.+..++..+.+.-+.+.+.=+++=+=.++-++|.+.|.....+|...+++.---+
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn 95 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKN 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666656654444444455556666778888888877776554333
No 29
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.86 E-value=6.1 Score=33.98 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=59.4
Q ss_pred CcceEEEeEeC-CeEEeeec-CC--CCC-HHHHHHHHhccCCCCCCCceEEEeCCEEEEEEEeCCeEEEEEEcCCcCcch
Q 027677 1 MAILFSLVARG-SVVLAECS-AT--ATN-ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRI 75 (220)
Q Consensus 1 M~i~Ya~Iar~-~~iLae~~-~~--~~~-~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~ 75 (220)
|.|....|... +.++.+.- .. ..+ .+..-+.++.+.. ....--.++.+++.|.|...+++.|+|+++.+...-.
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~-~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEE-EGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHH-TSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccc-cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 66777777654 44444322 21 122 2333444454321 0122346778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 027677 76 PFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 76 af~fL~~i~~~f~~~~~ 92 (220)
.+.||..+.+.+..-++
T Consensus 80 ~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998887776554
No 30
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=85.76 E-value=2.7 Score=27.49 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027677 163 ANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVL 206 (220)
Q Consensus 163 ~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~ 206 (220)
.++-.++.+|-+.+++=.|+-+++..|...+..+++-++-|+|=
T Consensus 26 ~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIk 69 (80)
T 2ww9_B 26 VEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIK 69 (80)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555777788888887776666666666543
No 31
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=85.75 E-value=6 Score=30.98 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=49.6
Q ss_pred CceEEEeCCEEEE-EEEeCCeEEEEEEcCCcCc----------------------chHHHHHHHHHHHHHhhh-chhhhh
Q 027677 42 SHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGR----------------------RIPFAFLEDIHQRFVKTY-GRAVLS 97 (220)
Q Consensus 42 ~k~~~~~~~~~~~-~l~~~~~~~~~itd~~~~~----------------------~~af~fL~~i~~~f~~~~-~~~~~~ 97 (220)
.-..+..+.|..| |....|+=|++++|+..+. ...-.||.+|.+.|.+.. .+..-.
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4567777887766 6668899999999997743 456789999997776522 121111
Q ss_pred cccCCCchhhhHHHHHHhhhh
Q 027677 98 AQAYGMNDEFSRVLSQQMEYY 118 (220)
Q Consensus 98 ~~~~~~~~~f~~~l~~~~~~y 118 (220)
....=-...|+..++.+++.+
T Consensus 198 ~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHhc
Confidence 000111257888888888765
No 32
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=84.24 E-value=6.3 Score=25.31 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 166 (220)
+.+.+++..+.++.+++.+=-..+.+.|+-||.++...++-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 568899999999999998877788899999998877666544
No 33
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=83.47 E-value=4.4 Score=30.09 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHhccCCCCC--CCceEEEeCCEEEEE-EEeCCeEEEEEEcCCcCcchHHHHHHHHHH-HHHhhh-chh-----hhhcc
Q 027677 30 RQILDKIPGNN--DSHVSYSQDRYIFHV-KRTDGLTVLCMADDTAGRRIPFAFLEDIHQ-RFVKTY-GRA-----VLSAQ 99 (220)
Q Consensus 30 ~~il~ki~~~~--~~k~~~~~~~~~~~~-l~~~~~~~~~itd~~~~~~~af~fL~~i~~-~f~~~~-~~~-----~~~~~ 99 (220)
+.+.+++.+.. +.-..++-+.|..|+ ....|+=|++++|+..+ -.-.+|.+|.+ .|..-. .+. .-...
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 55566776422 455677778888775 45789999999998744 45678889987 665411 222 00000
Q ss_pred --------cCCCchhhhHHHHHHhhhh
Q 027677 100 --------AYGMNDEFSRVLSQQMEYY 118 (220)
Q Consensus 100 --------~~~~~~~f~~~l~~~~~~y 118 (220)
.+=-...|+..++++++.+
T Consensus 130 ~~~~~~~~~pI~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKITNRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred cccccccCcCcccHHHHHHHHHHHHhc
Confidence 0112357888888888766
No 34
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=82.26 E-value=20 Score=30.86 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=42.6
Q ss_pred eEEEeCCEEEEEEEeCCeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
-.++.+++.|.|...+++.|+|+++.+...-..+.||..+.+.+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999999999999999999999998887776555
No 35
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=81.15 E-value=1 Score=29.15 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=30.9
Q ss_pred hhHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027677 154 RLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVV 205 (220)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i 205 (220)
+++.+.+...+.-.++.+|-+.+++=.|+.+++..|...+..+++-++-|+|
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666677777777777788888888887776666555555544
No 36
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=77.65 E-value=15 Score=25.31 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=4.1
Q ss_pred HHHHHHhHH
Q 027677 138 RNVMIENID 146 (220)
Q Consensus 138 ~~im~~ni~ 146 (220)
++-|.++|+
T Consensus 47 Qge~Id~Ie 55 (109)
T 3hd7_B 47 QGEMIDRIE 55 (109)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 444444444
No 37
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=75.63 E-value=6 Score=22.47 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027677 197 LILVIVYVVLAFVCHGL 213 (220)
Q Consensus 197 vv~~ii~~i~~~~c~gf 213 (220)
++++.+.+.+++-||.|
T Consensus 21 LllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 21 LLLLTILVLAMWKVGFF 37 (42)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 33344456677899666
No 38
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=75.61 E-value=12 Score=25.25 Aligned_cols=44 Identities=14% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhH
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNT 169 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s 169 (220)
-...+..+|+++++-|.+-|+.+-..=..||.+..++..|..-|
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35678999999999999998888777777776665555444333
No 39
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.41 E-value=2.3 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.119 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 027677 195 IILILVIVYVVLAFVCHGL 213 (220)
Q Consensus 195 ~~vv~~ii~~i~~~~c~gf 213 (220)
++++++.+.+.+++-||.|
T Consensus 21 ~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3333444556677899766
No 40
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=72.72 E-value=3.9 Score=24.60 Aligned_cols=19 Identities=11% Similarity=0.182 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 027677 195 IILILVIVYVVLAFVCHGL 213 (220)
Q Consensus 195 ~~vv~~ii~~i~~~~c~gf 213 (220)
++++++.+.+.+++-||.|
T Consensus 18 ~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 18 AGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3333444456677899766
No 41
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=71.73 E-value=16 Score=22.94 Aligned_cols=43 Identities=9% Similarity=0.256 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+.+++..+.++.+++.+=-..+.+-|+-||.++...++-..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5688899999999999988777888999999998877666543
No 42
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=71.71 E-value=0.72 Score=29.34 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 156 ELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 156 ~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
+.+.+...+.-.++.+|-+.++|=.|+..++..|...+..+++-++-|+|=+
T Consensus 5 ~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 5 MQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKL 56 (68)
T ss_dssp SSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556667777777777788888888777666666665565433
No 43
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=68.89 E-value=18 Score=22.36 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRK 174 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~ 174 (220)
..+..+...+.+..+.+.+.-+++-.=.++-+.|.+.+++.+.+|..+++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666667777676666677777888888888888887765
No 44
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=64.16 E-value=23 Score=22.01 Aligned_cols=43 Identities=9% Similarity=0.280 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+.+++..+.++.+++.+=-..+.+.|+.||.+....+.-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQL 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5688999999999999988778888999999998887776543
No 45
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=62.68 E-value=6.4 Score=20.03 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q 027677 129 RIKGEMSQVRNVMIENIDKVLERGDRLE 156 (220)
Q Consensus 129 ~i~~~v~~v~~im~~ni~~~l~Rge~l~ 156 (220)
.++.++.+++ .++|.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4566666643 57788887766653
No 46
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=61.77 E-value=3.9 Score=25.28 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHhhhhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027677 158 LVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILILVIVYVV 205 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~vv~~ii~~i 205 (220)
+.+...+.-.++.++-+.+++=.|+...+..|...+..+++-++-|+|
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777777777777888888887776666555555544
No 47
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=61.30 E-value=25 Score=21.42 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 132 GEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 132 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
+++..++.-+.+..+-+.++-+++-.=-++-+.|.+.|......|...++..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444555556666666666666665554
No 48
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=60.96 E-value=27 Score=21.63 Aligned_cols=43 Identities=7% Similarity=0.231 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+.+++..+.++.+++.+=-..+.+.|+.||.+....+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5688999999999999988778888999999998877775443
No 49
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=57.81 E-value=39 Score=22.58 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhH
Q 027677 129 RIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQA 176 (220)
Q Consensus 129 ~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a 176 (220)
.++..+.+.-+.+.+.=+++-+=.++-+.|.+.|.....+|...++..
T Consensus 41 eVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 41 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333333334444445555555555555554443
No 50
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=57.20 E-value=31 Score=21.16 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+.+++..+.++.+++.+=-..+.+.|+.||.+....+.-..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999988777888999999998877775443
No 51
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=56.35 E-value=31 Score=20.89 Aligned_cols=51 Identities=4% Similarity=0.142 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027677 133 EMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (220)
Q Consensus 133 ~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
++..+++-+.+..+-+.++-+++-.=.++-+.|.+.|......|...++..
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444444444444444455556666666665555443
No 52
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=50.17 E-value=24 Score=22.47 Aligned_cols=28 Identities=4% Similarity=0.284 Sum_probs=13.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 027677 185 WRNVKLTVALIILILVIVYVVLAFVCHGL 213 (220)
Q Consensus 185 ~~~~k~~~ii~~vv~~ii~~i~~~~c~gf 213 (220)
|...++..++..+|+.++ .|++..+|..
T Consensus 16 Y~tLRigGLifA~vLfi~-GI~iilS~kc 43 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLCVI-GIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTTC-
T ss_pred hHHheeccchhHHHHHHH-HHHHHHcCcc
Confidence 556666655555444333 3333344444
No 53
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=49.95 E-value=20 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027677 192 VALIILILVIVYVVLAF 208 (220)
Q Consensus 192 ~ii~~vv~~ii~~i~~~ 208 (220)
.++++++++++-+++|.
T Consensus 7 ~ivalivalIiaIVVWt 23 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWS 23 (36)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 54
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=49.82 E-value=28 Score=18.40 Aligned_cols=20 Identities=15% Similarity=0.569 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027677 188 VKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 188 ~k~~~ii~~vv~~ii~~i~~ 207 (220)
.|-.+|+.+++++++.+|+.
T Consensus 10 lKrLlivVvVvVlvVvVivG 29 (35)
T 1spf_A 10 LKRLLVVVVVVVLVVVVIVG 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hheEEEEEeeehhhHHHHHH
Confidence 44455555555555555543
No 55
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=49.14 E-value=13 Score=18.32 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q 027677 176 ARRFRSTVWWRNV 188 (220)
Q Consensus 176 a~~l~r~~~~~~~ 188 (220)
-+.+||+||..+.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578999998875
No 56
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=48.39 E-value=37 Score=23.11 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=31.1
Q ss_pred ceEEEeEeCCeEEeeecCCCCCHHHHHHHHhccCCCCCCCceEEEeCCEEEEEEE
Q 027677 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKR 57 (220)
Q Consensus 3 i~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~ki~~~~~~k~~~~~~~~~~~~l~ 57 (220)
|+|..|+++. +|++++..| +++. -+.+.-+++++|..||...
T Consensus 86 iiyltiskdn--icqfsdekg----------eqid-insqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 86 IIYLTISKDN--ICQFSDEKG----------EQID-INSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEECTTC--CEEEECTTS----------CEEC-CCSSSSEEEETTEEEEEEE
T ss_pred EEEEEEecCc--ceecccccC----------cEee-ccccccceeecceEeehhc
Confidence 7788888876 477887666 3454 3455668999999999864
No 57
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=47.73 E-value=55 Score=21.30 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhh
Q 027677 110 VLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (220)
Q Consensus 110 ~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (220)
.++..+... .+...+.....-.-+++.+++....+..+..-||+|+......+.+...
T Consensus 13 ~l~~~~~~~-~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 13 EIQQQCNQV-TDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 2333455566667788888888899999999999999888777766543
No 58
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=46.07 E-value=27 Score=22.42 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=29.1
Q ss_pred HHHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 109 RVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
+..+..+.+|+.+|.. +...++++-++....-=..|+.++|++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466678888665543 666777777777666666777777754
No 59
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=44.12 E-value=25 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhh
Q 027677 131 KGEMSQVRNVMIENIDKVLERGD 153 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~~~l~Rge 153 (220)
.++++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46799999999999999988854
No 60
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=44.08 E-value=62 Score=20.80 Aligned_cols=43 Identities=7% Similarity=0.231 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+.+++..+.++.+++.+=-..+.+.|+-||.++...+.-..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5688999999999999988777888999999998777765443
No 61
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=40.33 E-value=25 Score=22.12 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 110 VLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 110 ~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
..+..+.+|+.+|.. +...++++-++....-=+.|+.+++++
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667888655543 555666766666666566677666654
No 62
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=39.85 E-value=38 Score=17.15 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 027677 123 NADRINRIKGEMSQVRNVMIEN 144 (220)
Q Consensus 123 ~~dkl~~i~~~v~~v~~im~~n 144 (220)
..+|+.-++.+++|-++|..++
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3478889999999999988765
No 63
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=38.99 E-value=6.4 Score=27.85 Aligned_cols=24 Identities=4% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 027677 184 WWRNVKLTVALIILILVIVYVVLA 207 (220)
Q Consensus 184 ~~~~~k~~~ii~~vv~~ii~~i~~ 207 (220)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444443
No 64
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=38.25 E-value=73 Score=19.97 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhH
Q 027677 127 INRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQA 176 (220)
Q Consensus 127 l~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a 176 (220)
+..++.-+.+.-+.+.+.=+++=+=.++-+.|...|.....+|...++..
T Consensus 17 l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 17 VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555667777888888887776654
No 65
>2h8b_B Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_B 2k6u_B
Probab=38.07 E-value=26 Score=18.38 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=10.0
Q ss_pred HHHHHhCCCCCCC
Q 027677 205 VLAFVCHGLTLPT 217 (220)
Q Consensus 205 i~~~~c~gf~~~~ 217 (220)
.++.+|||.+|.+
T Consensus 17 a~I~vCG~s~w~~ 29 (31)
T 2h8b_B 17 ALVRVCGGPRWST 29 (31)
T ss_dssp HHHHHHCTTTCSS
T ss_pred HHHHHcCCCCcCC
Confidence 4578999998853
No 66
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=36.00 E-value=1.8e+02 Score=23.74 Aligned_cols=11 Identities=9% Similarity=0.320 Sum_probs=6.8
Q ss_pred HHHHHhCCCCCC
Q 027677 205 VLAFVCHGLTLP 216 (220)
Q Consensus 205 i~~~~c~gf~~~ 216 (220)
++.++- |+||+
T Consensus 294 ~IaGiy-GMNf~ 304 (339)
T 4ev6_A 294 WITGIY-GMNFS 304 (339)
T ss_dssp HHHHHT-TCCCS
T ss_pred HHHhhc-cCcCC
Confidence 334555 88875
No 67
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=35.41 E-value=87 Score=20.01 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhh
Q 027677 123 NADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (220)
Q Consensus 123 ~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (220)
..+.+.....-+.++.++-...+..+-..||.|+...+..++....
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~ 66 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH
Confidence 3477777888899999999999999999999999887777665543
No 68
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=34.65 E-value=76 Score=20.26 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHh
Q 027677 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQ 175 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~ 175 (220)
.+..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...++.
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544554455555666778888888888887654
No 69
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=34.27 E-value=52 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHH
Q 027677 185 WRNVKLTVALIILILV 200 (220)
Q Consensus 185 ~~~~k~~~ii~~vv~~ 200 (220)
|...++..++.++|+.
T Consensus 14 Y~tLRigGLifA~vLf 29 (67)
T 2jp3_A 14 WESLQLGGLIFGGLLC 29 (67)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHHHH
Confidence 4556665555444443
No 70
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=33.93 E-value=2e+02 Score=23.71 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027677 125 DRINRIKGEMSQVRNVMI 142 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~ 142 (220)
..+..++.++-..+..+.
T Consensus 221 ~~l~~lrr~l~~lrr~l~ 238 (363)
T 2iub_A 221 QRTHQLKRNLVELRKTIW 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555544444443
No 71
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=32.80 E-value=76 Score=18.58 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhh
Q 027677 130 IKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (220)
Q Consensus 130 i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (220)
...-++++.++-.+.+..+-+.||+|+...+.-++....
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 455678888899999999999999999887776655443
No 72
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=31.50 E-value=38 Score=27.07 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhh
Q 027677 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (220)
Q Consensus 125 dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 166 (220)
.-+.++...+.++.+++.+=-..+.+.|+-||.++...+.-.
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 446777788888888877766678899999999888776644
No 73
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=31.26 E-value=1.6e+02 Score=21.67 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=30.0
Q ss_pred EEEEEEEeC-----------CeEEEEEEcCCcCcchHHHHHHHHHHHHHhhhc
Q 027677 51 YIFHVKRTD-----------GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (220)
Q Consensus 51 ~~~~~l~~~-----------~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 92 (220)
+.|+|-.+| ++--+-|+|.+||.-..-.=++.....|..-|+
T Consensus 106 rIYTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~af~dlyG 158 (170)
T 4ftx_A 106 KIYTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLFG 158 (170)
T ss_dssp EEEEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHGGGGGGTT
T ss_pred EEEEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHHHHHHHhc
Confidence 557787776 899999999999976654445555556665554
No 74
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=30.21 E-value=73 Score=17.56 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027677 189 KLTVALIILILVIVYVVLA 207 (220)
Q Consensus 189 k~~~ii~~vv~~ii~~i~~ 207 (220)
.+.+|+.++++.++-.|++
T Consensus 11 ~i~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4566666777766655444
No 75
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.21 E-value=95 Score=18.88 Aligned_cols=52 Identities=8% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHHHH
Q 027677 131 KGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRST 182 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
...+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|......|...++.
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555554544444455555666666666666665544
No 76
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.91 E-value=53 Score=17.71 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027677 190 LTVALIILILVIVYVVL 206 (220)
Q Consensus 190 ~~~ii~~vv~~ii~~i~ 206 (220)
...|++.++.+++++|+
T Consensus 7 ~~sIaagVvglll~vii 23 (35)
T 1iij_A 7 VTFIIATVVGVLLFLIL 23 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHHHH
Confidence 34455555554444443
No 77
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=28.54 E-value=1.7e+02 Score=21.48 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=36.7
Q ss_pred CCcCcchHHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHH
Q 027677 69 DTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDK 147 (220)
Q Consensus 69 ~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~ 147 (220)
.+|.+......|.|.++...+... +.+..+=...++.....| .+|+- +.+-.- +..+.-.-+.+.+++
T Consensus 86 fTfD~~~L~~~L~ec~~lL~~lv~--------~HLT~KS~~Ri~~vF~~f-~~~efL~~lf~~--~~~~~L~kI~~~Lnk 154 (161)
T 3f4m_A 86 FTFEAAVLAGLLTECRDVLLELVE--------HHLTPKSHGRIRHVFDHF-SDPGLLTALYGP--DFTQHLGKICDGLRK 154 (161)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHT--------TTSCHHHHHHHHHHHHHH-TCHHHHHHHTSG--GGHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH--------hhCCcchHHHHHHHHHHh-CCHHHHHHHhCc--HHHHHHHHHHHHHHH
Confidence 344554555555555554443221 122222234555556666 34432 222221 445555556778889
Q ss_pred HHHhhh
Q 027677 148 VLERGD 153 (220)
Q Consensus 148 ~l~Rge 153 (220)
+|++|.
T Consensus 155 lld~g~ 160 (161)
T 3f4m_A 155 LLDEGK 160 (161)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 998884
No 78
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.09 E-value=72 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.9
Q ss_pred HHHhHHHHHHHHHHH
Q 027677 185 WRNVKLTVALIILIL 199 (220)
Q Consensus 185 ~~~~k~~~ii~~vv~ 199 (220)
|...++..++.++|+
T Consensus 13 Y~tLRiGGLifA~vL 27 (72)
T 2jo1_A 13 YQSLQIGGLVIAGIL 27 (72)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hHHhhccchHHHHHH
Confidence 445555444443333
No 79
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=27.84 E-value=1.1e+02 Score=19.03 Aligned_cols=53 Identities=4% Similarity=0.022 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhhhhhhhHHHHHHhHHHHH
Q 027677 128 NRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180 (220)
Q Consensus 128 ~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~ 180 (220)
...-.-.++..++=..++..+-+-||+|+..+..-+.+....+.=.+..+.++
T Consensus 15 rr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 15 RNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566677777788889999999999988888887777666665555554
No 80
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=27.51 E-value=71 Score=19.69 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=12.8
Q ss_pred HHHhhhhhHHHHHhhhhhhhhHHH
Q 027677 148 VLERGDRLELLVDKTANMQGNTFR 171 (220)
Q Consensus 148 ~l~Rge~l~~L~~ks~~L~~~s~~ 171 (220)
++++|++|..|.+.+.........
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q~~ 30 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQKR 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555554443333
No 81
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=26.76 E-value=33 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 027677 178 RFRSTVWWRNVKLTVALIILILVIV 202 (220)
Q Consensus 178 ~l~r~~~~~~~k~~~ii~~vv~~ii 202 (220)
+-.+|.|+++.-.++++++++++++
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~~~~~ 50 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILIIIAL 50 (263)
T ss_dssp ---------CCTTHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344566666554444444444333
No 82
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=26.39 E-value=48 Score=16.77 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.7
Q ss_pred HHHHHhCCCCC
Q 027677 205 VLAFVCHGLTL 215 (220)
Q Consensus 205 i~~~~c~gf~~ 215 (220)
.++.+|||.+|
T Consensus 17 a~I~vCG~srw 27 (27)
T 2fhw_B 17 AVIFTCGGSRW 27 (27)
T ss_dssp HHHHHHTSSCC
T ss_pred HHHHhhcccCC
Confidence 45678988754
No 83
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=25.77 E-value=25 Score=26.84 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=26.6
Q ss_pred cCcchHHHHHHHHHHHH------HhhhchhhhhcccCCCc------hhhhHHHHHHhhhhcCCcchhHHHHHHHHHHHHH
Q 027677 71 AGRRIPFAFLEDIHQRF------VKTYGRAVLSAQAYGMN------DEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVR 138 (220)
Q Consensus 71 ~~~~~af~fL~~i~~~f------~~~~~~~~~~~~~~~~~------~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~ 138 (220)
..+.+...+|++|...| .+.|+... +..-..++ .+|...|+++.+.- +...++.++++-
T Consensus 12 Lsq~m~~~LLe~i~~~YddY~~fC~~f~~~n-~E~l~eLQ~v~~Dl~~F~~QL~qL~~~~--------i~~Tre~v~d~l 82 (204)
T 2jqq_A 12 LSQKMVQTLLEQIRSNYDDYLTFSNTYTDEE-NETLINLEKTQSDLQKFMTQLDHLIKDD--------ISNTQEIIKDVL 82 (204)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHS--------CSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhHHHHHHHHH
Confidence 34455566777777654 33443311 11111122 35556666655532 222333344443
Q ss_pred HHHH--HhHHHHHHhhhhhHHHHHhhhhhh
Q 027677 139 NVMI--ENIDKVLERGDRLELLVDKTANMQ 166 (220)
Q Consensus 139 ~im~--~ni~~~l~Rge~l~~L~~ks~~L~ 166 (220)
+-+. ++|...|+....|.....-+..|+
T Consensus 83 ~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs 112 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQLTEALSLGKRLS 112 (204)
T ss_dssp HHHHHHHHHHHTCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3332 355555666666665555555554
No 84
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=25.75 E-value=55 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=8.9
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 027677 185 WRNVKLTVALIILILVIVY 203 (220)
Q Consensus 185 ~~~~k~~~ii~~vv~~ii~ 203 (220)
|...++-.++...+..++.
T Consensus 7 y~tLrigGLi~a~vLfi~g 25 (31)
T 3n2f_G 7 YETVRNGGLIFAALAFIVG 25 (31)
T ss_dssp HHHHHHHHTTTHHHHHHHH
T ss_pred hHHHhhcchhHHHHHHHHH
Confidence 4555555544444443333
No 85
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=24.91 E-value=2e+02 Score=20.92 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=47.1
Q ss_pred EEEeE-eCCeEEee-----ecCCCCCHHH----------HHHHHhccCCCCCCCceEEEeC-CEEEEEEEeCCeEEEEEE
Q 027677 5 FSLVA-RGSVVLAE-----CSATATNASA----------IARQILDKIPGNNDSHVSYSQD-RYIFHVKRTDGLTVLCMA 67 (220)
Q Consensus 5 Ya~Ia-r~~~iLae-----~~~~~~~~~~----------~a~~il~ki~~~~~~k~~~~~~-~~~~~~l~~~~~~~~~it 67 (220)
+++|+ +++.+++. ....+ +-+. .++.+.+.+....-....++.+ ++.|-.-..++.+.++++
T Consensus 31 ~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla 109 (163)
T 1j3w_A 31 YALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVF 109 (163)
T ss_dssp EEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEE
T ss_pred EEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEe
Confidence 44444 56799998 44433 4432 3344445555322333444544 555656668888889999
Q ss_pred cCCcCcchHHHHHHHHHHHH
Q 027677 68 DDTAGRRIPFAFLEDIHQRF 87 (220)
Q Consensus 68 d~~~~~~~af~fL~~i~~~f 87 (220)
+++.+--...-.+.+..++.
T Consensus 110 ~~~a~lG~v~~~m~~~v~~l 129 (163)
T 1j3w_A 110 DETAPLGKVKLHGKRASEAL 129 (163)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHH
Confidence 99988555544444444433
No 86
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=24.22 E-value=56 Score=16.31 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027677 126 RINRIKGEMSQVRNVMI 142 (220)
Q Consensus 126 kl~~i~~~v~~v~~im~ 142 (220)
-+.++++.+.++++.|.
T Consensus 6 i~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667777777777664
No 87
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=23.48 E-value=36 Score=22.74 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=25.1
Q ss_pred HHHHHhhhhcCCcch-hHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 027677 110 VLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (220)
Q Consensus 110 ~l~~~~~~yn~~~~~-dkl~~i~~~v~~v~~im~~ni~~~l~R 151 (220)
..+..+++||.+|.. +...++++-+++....=+.|+.+++++
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556688655432 556666766666666566666666643
No 88
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=23.38 E-value=1e+02 Score=22.56 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=25.5
Q ss_pred HHHHHhhhhcCCcch-hHHHHHHHHHH-HHHHHHHHhHHHHHHh
Q 027677 110 VLSQQMEYYSDDPNA-DRINRIKGEMS-QVRNVMIENIDKVLER 151 (220)
Q Consensus 110 ~l~~~~~~yn~~~~~-dkl~~i~~~v~-~v~~im~~ni~~~l~R 151 (220)
..+..+.+|+.+|.. ....++++-++ ....-=..|+.+++++
T Consensus 21 eYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 21 EYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 456677888665543 55567777777 4444445566666544
No 89
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=22.78 E-value=2.6e+02 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhh
Q 027677 131 KGEMSQVRNVMIENIDKVLERGDRLELLVDKTA 163 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~ 163 (220)
.+.++++++.=.+.++..++....+...++.+.
T Consensus 90 ~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~ 122 (214)
T 2cly_A 90 IAQLEEVKQASIKQIQDAIDMEKSQQALVQKRH 122 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333333333333333333333
No 90
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=22.43 E-value=1.7e+02 Score=19.26 Aligned_cols=40 Identities=5% Similarity=0.097 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhh
Q 027677 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTA 163 (220)
Q Consensus 124 ~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~ 163 (220)
..++..+-.++..++-.|..++++-.++.+.+-++.+|-.
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls 71 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKIS 71 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999999988888877766666654
No 91
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.29 E-value=3.1e+02 Score=24.53 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.4
Q ss_pred hhhhHHHHHHhhhhcCCc
Q 027677 105 DEFSRVLSQQMEYYSDDP 122 (220)
Q Consensus 105 ~~f~~~l~~~~~~yn~~~ 122 (220)
..|...+.++...|+..|
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 357777888888896655
No 92
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=21.70 E-value=44 Score=19.20 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred hhhHHHHHHhhhh-cCCcchhHHHHHHHHHHHHHHHHHHhH
Q 027677 106 EFSRVLSQQMEYY-SDDPNADRINRIKGEMSQVRNVMIENI 145 (220)
Q Consensus 106 ~f~~~l~~~~~~y-n~~~~~dkl~~i~~~v~~v~~im~~ni 145 (220)
+.+..|..+|..- +.+.....|...+.+++...+|+.++.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 4556677777643 111122556677788888888887763
No 93
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.49 E-value=2.6e+02 Score=20.84 Aligned_cols=81 Identities=10% Similarity=0.164 Sum_probs=49.3
Q ss_pred hHHHHHHhhhhcCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhh-------------------------
Q 027677 108 SRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKT------------------------- 162 (220)
Q Consensus 108 ~~~l~~~~~~yn~~~~~dkl~~i~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks------------------------- 162 (220)
...|++.-..++ .+.++|......++.-++.+..|++.+-++-++++.+..++
T Consensus 44 q~sl~~~~~~l~--~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~ 121 (174)
T 2p22_A 44 QESIARFHEIIA--IDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLV 121 (174)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHH
Confidence 334444444441 34467888888888888888888777766544444333221
Q ss_pred -hhhh----------------hhHHHHHHhHHHHHHHHHHHHhHH
Q 027677 163 -ANMQ----------------GNTFRFRKQARRFRSTVWWRNVKL 190 (220)
Q Consensus 163 -~~L~----------------~~s~~f~~~a~~l~r~~~~~~~k~ 190 (220)
++.. -.-..|-|..|.+.|..+|.+.-+
T Consensus 122 Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~ 166 (174)
T 2p22_A 122 AQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHI 166 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 134578888999999888877644
No 94
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=21.43 E-value=1.7e+02 Score=20.29 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhhcccCCCchhhhHHHHHHhhhhcCCcc----hhHHHHHHHHHHHHHH
Q 027677 76 PFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN----ADRINRIKGEMSQVRN 139 (220)
Q Consensus 76 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~----~dkl~~i~~~v~~v~~ 139 (220)
+-.=+.+....|...|..........++ ..+...|..+--+|++.+. .+....+.++++++..
T Consensus 43 a~~~ar~~ind~vsrYRr~~~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~ 109 (115)
T 2kmf_A 43 VQDTARGQINDYISRYRRKGDAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAER 109 (115)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3344444455677777543222222222 2556788888888854331 1444667777766544
No 95
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=20.87 E-value=91 Score=16.37 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=14.2
Q ss_pred CcchHHHHHHHHHHHHHh
Q 027677 72 GRRIPFAFLEDIHQRFVK 89 (220)
Q Consensus 72 ~~~~af~fL~~i~~~f~~ 89 (220)
+...+..||+.+.+.|+.
T Consensus 11 ~~EsPs~FlerL~eayR~ 28 (32)
T 1bm4_A 11 PNESPSAFLERLKEAYRR 28 (32)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 445678999999998873
No 96
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=20.51 E-value=30 Score=16.55 Aligned_cols=7 Identities=29% Similarity=0.720 Sum_probs=5.2
Q ss_pred HHHHHHh
Q 027677 182 TVWWRNV 188 (220)
Q Consensus 182 ~~~~~~~ 188 (220)
+.||+++
T Consensus 2 ~~WkK~f 8 (22)
T 3kf9_B 2 RRWKKNF 8 (26)
T ss_dssp HHHHHHH
T ss_pred chHHHHH
Confidence 4688886
Done!