BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027679
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 118/125 (94%)
Query: 96 CELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVG 155
CE +V+PSGLAFCDKVVG GPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPL FR+GVG
Sbjct: 5 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 64
Query: 156 EVIKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVE 215
EVIKGWD+GILG DGIPPMLTGGKR L+IPPELAYG RGAGC+GGSC+IPP SVL+FD+E
Sbjct: 65 EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIE 124
Query: 216 FVGKA 220
++GKA
Sbjct: 125 YIGKA 129
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 70/122 (57%), Gaps = 11/122 (9%)
Query: 96 CELTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVG 155
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G
Sbjct: 1 STVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGG 60
Query: 156 EVIKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVE 215
VIKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE
Sbjct: 61 HVIKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVE 109
Query: 216 FV 217
+
Sbjct: 110 LL 111
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 IVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE +
Sbjct: 159 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE +
Sbjct: 159 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELL 207
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMV 158
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE +
Sbjct: 159 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELL 207
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 7 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 66
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE +
Sbjct: 67 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELL 115
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 23 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 82
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE +
Sbjct: 83 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELL 131
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGA + +IPP++ L+F+VE +
Sbjct: 159 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGA-----AGVIPPNATLVFEVELL 207
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ F SS +R P F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMV 158
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG RGAG +IPP++ L+F+VE +
Sbjct: 159 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGARGAG-----GVIPPNATLVFEVELL 207
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ SGL + D G G EA GQ + HY G L +G+ FDSS +R P F LG G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
IKGWDEG+ G M GG R L IPP+L YG GA +IPP++ L+F+VE +
Sbjct: 63 IKGWDEGVQG------MKVGGVRRLTIPPQLGYGAGGA-----GGVIPPNATLVFEVELL 111
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
KG ++ HY GKLE+G FDSS + +P +F LG G+VIKGWD+G+LG M G K
Sbjct: 8 KGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLG------MCEGEK 61
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
R L IP EL YG RGA + IP + L+F+VE +
Sbjct: 62 RKLVIPSELGYGERGAPPK-----IPGGATLVFEVELL 94
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 56/97 (57%), Gaps = 11/97 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
GQ+ HY G L +GKVFDSS RGKP F +G GEVI+GWDE G+ M G +
Sbjct: 20 GQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDE------GVAQMSVGQRA 73
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L P+ AY G RG +IPP++ L FDVE +
Sbjct: 74 KLVCSPDYAY-----GSRGHPGVIPPNATLTFDVELL 105
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 11/97 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G+ + HY G+ +GK FDSS +RGKP F LG GEVIKGWD+G+ M G K
Sbjct: 43 GKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVA------TMTLGEKA 96
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
+ IP +LAYG RG +IPP + L+F+VE +
Sbjct: 97 LFTIPYQLAYGERGY-----PPVIPPKATLVFEVELL 128
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 11/97 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G L+ HY G LENG+ FDSS +RG P +GVG+VIKGWD GIP + G K
Sbjct: 25 GDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDV------GIPKLSVGEKA 78
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L IP AYG RG +IPP+S L+FDVE +
Sbjct: 79 RLTIPGPYAYGPRGF-----PGLIPPNSTLVFDVELL 110
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP++ L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPNATLIFDVELL 104
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 20 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA------QMSVGQR 73
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 74 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 106
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+GW EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
GQ HY G LE+GK FDSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 19 GQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA------QMSVGQRA 72
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 73 KLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+GW EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS ++ KP F LG EVI+GW+EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AYG G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAYGATGV-----PGIIPPHATLVFDVELL 104
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G ++ HY G L +GK FDSS +R F+LG G+VIKGWD+ GI M G
Sbjct: 30 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQ------GIKTMKKGENA 83
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
+ IPPELAYG G+ IP ++ L FDVE +
Sbjct: 84 LFTIPPELAYGESGS-----PPTIPANATLQFDVELL 115
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 120 KGQLIKAHYVGKLENGKVF-DSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
+G ++ GKL++G VF ++ +P F+ VI+G D +L M G
Sbjct: 262 EGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLN------MKKGE 315
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
++ IPPE AYG + I+PP+S ++++VE V
Sbjct: 316 VALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELV 351
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 170 GIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
+ M G K +L + P+ +G G G +PP++ L+ D+E V
Sbjct: 185 AVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELV 232
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G ++ HY G L +GK FDSS +R F+LG G+VIKGWD+ GI M G
Sbjct: 46 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQ------GIKTMKKGENA 99
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
+ IPPELAYG G+ IP ++ L FDVE +
Sbjct: 100 LFTIPPELAYGESGS-----PPTIPANATLQFDVELL 131
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 120 KGQLIKAHYVGKLENGKVF-DSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
+G ++ GKL++G VF ++ +P F+ VI+G D +L M G
Sbjct: 278 EGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLN------MKKGE 331
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
++ IPPE AYG + I+PP+S ++++VE V
Sbjct: 332 VALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELV 367
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 170 GIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
+ M G K +L + P+ +G G G +PP++ L+ D+E V
Sbjct: 201 AVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELV 248
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK DSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
KGQ HY G L+NGK FDSS +R KP FR+G EVIKG++EG M G +
Sbjct: 18 KGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAA------QMSLGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L P++AY G G +IPP++ L+FDVE +
Sbjct: 72 AKLTCTPDVAY-----GATGHPGVIPPNATLIFDVELL 104
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK DSS +R KP F LG EVI+GW+EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+G++EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 102 PSGLAFCDKVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKG 160
PSGL F G G A + HY G+L +G VFDSS RGKP FR EVIKG
Sbjct: 36 PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKG 93
Query: 161 WDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
W E + M G + L IP +LAYG+ G G +IPP S L FDVE +
Sbjct: 94 WTE------ALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELI 139
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGK 179
+GQ HY G LE+GK FDSS +R KP F LG EVI+G +EG+ M G +
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVA------QMSVGQR 71
Query: 180 RILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
L I P+ AY G G IIPP + L+FDVE +
Sbjct: 72 AKLTISPDYAY-----GATGHPGIIPPHATLVFDVELL 104
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYN-------RGKPLIFRLGVGEVIKGWDEGILGGDGIP 172
KG ++ Y G L++G VFD++ KPL F++GVG+VI+GWDE +L
Sbjct: 19 KGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLT----- 73
Query: 173 PMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
M G K L+I PE AYG +G IPP++ L F+VE V
Sbjct: 74 -MSKGEKARLEIEPEWAYGKKGQ----PDAKIPPNAKLTFEVELV 113
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYN-------RGKPLIFRLGVGEVIKGWDEGILGGDGIP 172
KG ++ Y G L +G VFD++ KPL F++GVG+VI+GWDE +L
Sbjct: 22 KGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLT----- 76
Query: 173 PMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
M G K L+I PE AYG +G IPP++ L+F+VE V
Sbjct: 77 -MSKGEKARLEIEPEWAYGKKGQ----PDAKIPPNTKLIFEVELV 116
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+VIK WD
Sbjct: 38 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD------ 91
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F++E +
Sbjct: 92 IGVATMKRGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELL 135
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F +G G+VIK WD
Sbjct: 38 KRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWD------ 91
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F+VE +
Sbjct: 92 IGVATMKKGEICHLLCKPEYAYGATGSLPK-----IPSNATLFFEVELL 135
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 15/100 (15%)
Query: 121 GQLIKAHYVGKLE-NGKVFDSSY--NRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTG 177
G L+ HY G LE +G +F S++ N G+P+ F LG+ E +KGWD+G+ G M G
Sbjct: 32 GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKG------MCVG 85
Query: 178 GKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
KR L IPP L YG G G IPP+S L+F+++ +
Sbjct: 86 EKRKLIIPPALGYGKEGKGK------IPPESTLIFNIDLL 119
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+VIK WD
Sbjct: 42 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD------ 95
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F++E +
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELL 139
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+VIK WD
Sbjct: 42 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD------ 95
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F++E +
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELL 139
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+VIK WD
Sbjct: 26 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD------ 79
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F++E +
Sbjct: 80 IGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELL 123
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+VIK WD
Sbjct: 42 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD------ 95
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F++E +
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELL 139
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K VG G E + G + HY GKL NGK FDSS++R +P +F LG G+VIK WD
Sbjct: 26 KRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD------ 79
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
G+ M G L PE AYG G+ + IP ++ L F++E +
Sbjct: 80 IGVATMKKGEICHLLCKPEYAYGSAGSLPK-----IPSNATLFFEIELL 123
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 120 KGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
KG + HYVGKLE+ GKVFDSS R P F LG GEVIKGWD + M
Sbjct: 35 KGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWD------ICVASMTKNE 88
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
K +++ + YG G G IP +SVL+F++E +
Sbjct: 89 KCSVRLDSKYGYGEEGCGES-----IPGNSVLIFEIELI 122
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 120 KGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
KG + HYVGKLE+ GKVFDSS++R P F L GEVIKGWD + M
Sbjct: 36 KGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWD------ICVSSMRKNE 89
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
K +++I YG G G IP +SVL+F++E +
Sbjct: 90 KCLVRIESMYGYGDEGCGES-----IPGNSVLLFEIELL 123
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 120 KGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
KG + HYVGKLE+ GKVFDSS++R P F L GEVIKGWD + M
Sbjct: 36 KGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWD------ICVSSMRKNE 89
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
K +++I YG G G IP +SVL+F++E +
Sbjct: 90 KCLVRIESMYGYGDEGCGES-----IPGNSVLLFEIELL 123
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ + +GL + G G + +Y G L +GK FD+SY RG+PL FRL V
Sbjct: 116 VKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--V 173
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
I GW EG+ + GGK L IPPELAYG AG G IPP+S L+FDVE +
Sbjct: 174 IPGWTEGLKN------IKKGGKIKLVIPPELAYGK--AGVPG----IPPNSTLVFDVELL 221
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ + +GL + G G + +Y G L +GK FD+SY RG+PL FRL V
Sbjct: 116 VKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--V 173
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
I GW EG+ + GGK L IPPELAYG AG G IPP+S L+FDVE +
Sbjct: 174 IPGWTEGLK------NIKKGGKIKLVIPPELAYGK--AGVPG----IPPNSTLVFDVELL 221
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G +K HYVG LENG FDSS +RG F LG G VIKGWD G+ M G
Sbjct: 33 GTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDL------GVATMTKGEVA 86
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
I + YG G+ + IP + L+F+VE
Sbjct: 87 EFTIRSDYGYGDAGSPPK-----IPGGATLIFEVEL 117
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G + HY G L +G FDSS +R F LG GEVIK WD I M G
Sbjct: 50 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWD------IAIATMKVGEVC 103
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
+ PE AYG G+ + IPP++ L+F+VE
Sbjct: 104 HITCKPEYAYGSAGSPPK-----IPPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G + HY G L +G FDSS +R F LG GEVIK WD I M G
Sbjct: 54 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWD------IAIATMKVGEVC 107
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
+ PE AYG G+ + IPP++ L+F+VE
Sbjct: 108 HITCKPEYAYGSAGSPPK-----IPPNATLVFEVEL 138
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 103 SGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWD 162
G+ + G GP+ ++ YVG+L +GK+FD S +P FRL VI GW
Sbjct: 117 DGILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQST---QPQWFRL--DSVISGWT 171
Query: 163 EGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFVG 218
+ M TG K L IP + AYG GAG +I P + L+F++E +
Sbjct: 172 SALQN------MPTGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 110 KVVGVGPEA-VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG 168
K G G E + G + HY G L +G FDSS +R F LG GEVIK WD +
Sbjct: 37 KREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVAT- 95
Query: 169 DGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
M G + PE AYG G+ + IPP++ L+F+VE
Sbjct: 96 -----MKVGELCRITCKPEYAYGSAGSPPK-----IPPNATLVFEVEL 133
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 121 GQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKR 180
G + HY G L +G FDSS +R F LG GEVIK WD I M G
Sbjct: 70 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWD------IAIATMKVGEVC 123
Query: 181 ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
+ PE AYG G+ + IPP++ L+F+VE
Sbjct: 124 HITCKPEYAYGSAGSPPK-----IPPNATLVFEVEL 154
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 19/88 (21%)
Query: 120 KGQLIKAHYVGKLENGKVFDSSYN-------------RGKPLIFRLGVGEVIKGWDEGIL 166
KG IK Y+GKLE+G VFD+S +PL F +G G++I+G++E +L
Sbjct: 4 KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63
Query: 167 GGDGIPPMLTGGKRILKIPPELAYGMRG 194
M G ++ +KIP E AYG R
Sbjct: 64 D------MEVGDEKTVKIPAEKAYGNRN 85
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ V PSGL + G G + K + Y G+L +G VFDS+ GKP F+ V +V
Sbjct: 101 VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQ--VSQV 158
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
I GW E + M G + +P LAYG R G I P+ L+F + +
Sbjct: 159 IPGWTE------ALQLMPAGSTWEIYVPSGLAYGPRSVGGP-----IGPNETLIFKIHLI 207
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 98 LTVAPSGLAFCDKVVGVGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEV 157
+ V PSGL + G G + K + Y G+L +G VFDS+ GKP F+ V +V
Sbjct: 25 VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQ--VSQV 82
Query: 158 IKGWDEGILGGDGIPPMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
I GW E + M G + +P LAYG R G I P+ L+F + +
Sbjct: 83 IPGWTEALQ------LMPAGSTWEIYVPSGLAYGPRSVGGP-----IGPNETLIFKIHLI 131
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 124 IKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGGKRILK 183
+ H+ KL++G +S+ N GKP +FRLG + +G ++ +LG + G K
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLG------LKVGDKTTFS 84
Query: 184 IPPELAYGM 192
+ P+ A+G+
Sbjct: 85 LEPDAAFGV 93
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 20/87 (22%)
Query: 120 KGQLIKAHYVGKLENGKVFDSS----------YNRGK---PLIFRLGVGEVIKGWDEGIL 166
KG+++K Y G + +GK+FD++ YN P+ G G+V+ G DE IL
Sbjct: 4 KGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL 62
Query: 167 GGDGIPPMLTGGKRILKIPPELAYGMR 193
D G +R + +PPE A+G R
Sbjct: 63 EMD------VGEEREVVLPPEKAFGKR 83
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 114 VGPEAVKGQLIKAHYVGKLEN-GKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIP 172
V P+A + Y G LE+ + FDS+Y R P + +LG + G + G+L
Sbjct: 41 VAPDAS----VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLS----- 91
Query: 173 PMLTGGKRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFV 217
M G P AYG GC +IPP++ ++F++E +
Sbjct: 92 -MRRGELARFLFKPNYAYGT--LGC---PPLIPPNTTVLFEIELL 130
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 20/87 (22%)
Query: 120 KGQLIKAHYVGKLENGKVFDSS----------YNRGK---PLIFRLGVGEVIKGWDEGIL 166
KG+++K Y G + +GK+FD++ YN P+ G G+V+ G DE IL
Sbjct: 4 KGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL 62
Query: 167 GGDGIPPMLTGGKRILKIPPELAYGMR 193
D G +R + +PPE A+G R
Sbjct: 63 EMD------VGEEREVVLPPEKAFGKR 83
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 119 VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
VKGQ++ H LENG + L+F LG +VI+ D +P M G
Sbjct: 61 VKGQVVTVHLQTSLENG----TRVQEEPELVFTLGDCDVIQALDL------SVPLMDVGE 110
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
++ + YG +G+ S IPP + L +V
Sbjct: 111 TAMVTADSKYCYGPQGS----RSPYIPPHAALCLEVTL 144
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 119 VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
VKGQ++ H LENG + L+F LG +VI+ D +P M G
Sbjct: 35 VKGQVVTVHLQTSLENG----TRVQEEPELVFTLGDCDVIQALDL------SVPLMDVGE 84
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
++ + YG +G+ S IPP + L +V
Sbjct: 85 TAMVTADSKYCYGPQGS----RSPYIPPHAALCLEVTL 118
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 119 VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
VKGQ++ H LENG + L+F LG +VI+ D +P M G
Sbjct: 31 VKGQVVTVHLQTSLENG----TRVQEEPELVFTLGDCDVIQALDL------SVPLMDVGE 80
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
++ + YG +G S IPP + L +V
Sbjct: 81 TAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTL 113
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 119 VKGQLIKAHYVGKLENGKVFDSSYNRGKPLIFRLGVGEVIKGWDEGILGGDGIPPMLTGG 178
VKGQ++ H LENG + L+F LG +VI+ D +P M G
Sbjct: 29 VKGQVVTVHLQTSLENG----TRVQEEPELVFTLGDCDVIQALDL------SVPLMDVGE 78
Query: 179 KRILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEF 216
++ + YG +G S IPP + L +V
Sbjct: 79 TAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTL 111
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 127 HYVGKLENGK-VFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG--DGIPPMLTGGKRILK 183
HY +N + F+ +++ +P+ E++ G ++ L G G+ M +G + ++
Sbjct: 73 HYRAWTKNSQHKFEDTWHEQQPI-------ELVLGKEKKELAGLAIGVASMKSGERALVH 125
Query: 184 IPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFVG 218
+ ELAYG G +PP + L+++VE +G
Sbjct: 126 VGWELAYGKEGNFSFPN---VPPMADLLYEVEVIG 157
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 127 HYVGKLENGK-VFDSSYNRGKPLIFRLGVGEVIKGWDEGILGG--DGIPPMLTGGKRILK 183
HY +N + F+ +++ +P+ E++ G ++ L G G+ M +G + ++
Sbjct: 73 HYRAWTKNSQHKFEDTWHEQQPI-------ELVLGKEKKELAGLAIGVASMKSGERALVH 125
Query: 184 IPPELAYGMRGAGCRGGSCIIPPDSVLMFDVEFVG 218
+ ELAYG G +PP + L+++VE +G
Sbjct: 126 VGWELAYGKEGNFSFPN---VPPMADLLYEVEVIG 157
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
Query: 132 LENGKVFDSS-YNRGKPLIFRLGVGEVIKGWD-EG-----ILGGDGI-------PPMLTG 177
LE K DS YN+ LI R G+ + WD EG +GG G+ P ++
Sbjct: 13 LEAEKTLDSGVYNKHDLLIVR---GQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 69
Query: 178 GKR----ILKIPPELAYGMRGAGCRGGSCIIPPDSVLMFDV 214
KR ++ +P L MRG R + I+PP+ +F V
Sbjct: 70 VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,265,541
Number of Sequences: 62578
Number of extensions: 253123
Number of successful extensions: 572
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 70
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)