BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027681
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC
SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK
ELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPP
SSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL

High Scoring Gene Products

Symbol, full name Information P value
AT5G26990 protein from Arabidopsis thaliana 1.2e-17
AT3G05700 protein from Arabidopsis thaliana 5.3e-17
HRB1
HYPERSENSITIVE TO RED AND BLUE
protein from Arabidopsis thaliana 9.8e-16
AT1G02750 protein from Arabidopsis thaliana 5.6e-13
AT4G02200 protein from Arabidopsis thaliana 1.5e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027681
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2148528 - symbol:AT5G26990 species:3702 "Arabi...   215  1.2e-17   1
TAIR|locus:2078062 - symbol:AT3G05700 species:3702 "Arabi...   209  5.3e-17   1
TAIR|locus:2155934 - symbol:HRB1 "HYPERSENSITIVE TO RED A...   197  9.8e-16   1
TAIR|locus:2196125 - symbol:AT1G02750 species:3702 "Arabi...   171  5.6e-13   1
TAIR|locus:2137819 - symbol:AT4G02200 species:3702 "Arabi...   128  1.5e-06   1


>TAIR|locus:2148528 [details] [associations]
            symbol:AT5G26990 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0009414 "response to water
            deprivation" evidence=ISS] Pfam:PF05605 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AF007270 HOGENOM:HOG000238690
            InterPro:IPR008598 ProtClustDB:CLSN2916570 EMBL:BT011220
            EMBL:BT012151 IPI:IPI00528556 PIR:T01774 RefSeq:NP_198051.1
            UniGene:At.43013 EnsemblPlants:AT5G26990.1 GeneID:832757
            KEGG:ath:AT5G26990 TAIR:At5g26990 eggNOG:NOG318678
            InParanoid:Q6NM26 OMA:FREEYAC PhylomeDB:Q6NM26
            Genevestigator:Q6NM26 Uniprot:Q6NM26
        Length = 222

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 61/193 (31%), Positives = 91/193 (47%)

Query:     1 MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFC--YLEIEAH 57
             MD D W+ R+ SA + +     SR  +DN    +E E +DD +  + CPFC  Y +I + 
Sbjct:     1 MDSDSWSDRLASASRRYQLDFLSR--SDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS- 57

Query:    58 MICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAM 117
              +C H+ E+H  + KN VCP+CA  +  D   H  +QHA+  K  RK  +   R G  +M
Sbjct:    58 -LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSM 114

Query:   118 L---------GKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDD-CTN 167
             L         G   S F G+   V  ++     DPLLS F+    ++D   I +   C +
Sbjct:   115 LSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI--SPMADDFFISESSLCAD 172

Query:   168 KFSLASDLKRYPP 180
               S    L +  P
Sbjct:   173 TSSAKKTLNQSLP 185


>TAIR|locus:2078062 [details] [associations]
            symbol:AT3G05700 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0009414 "response to water
            deprivation" evidence=ISS] Pfam:PF05605 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AC011620 HOGENOM:HOG000238690
            InterPro:IPR008598 EMBL:BT004008 EMBL:BT005154 IPI:IPI00522575
            RefSeq:NP_187221.2 UniGene:At.40625 EnsemblPlants:AT3G05700.1
            GeneID:819739 KEGG:ath:AT3G05700 TAIR:At3g05700 eggNOG:NOG242010
            InParanoid:Q84J70 OMA:HANIFKM PhylomeDB:Q84J70
            ProtClustDB:CLSN2916570 Genevestigator:Q84J70 Uniprot:Q84J70
        Length = 223

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 58/163 (35%), Positives = 86/163 (52%)

Query:     1 MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFC--YLEIEAH 57
             MD D W+ R+ SA + +     SR  +D     +E + +++ +  F CPFC  Y +I + 
Sbjct:     1 MDSDSWSDRLASATRRYQLAFPSR--SDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS- 57

Query:    58 MICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGS-- 115
              +C H+ E+H  E KN VCP+CA  +G D   H  +QHA+  K  RK  K   R GGS  
Sbjct:    58 -LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRK-RKP--RRGGSYS 113

Query:   116 --AMLGKEL------SSFLGSPTIVRGNAPESLP-DPLLSPFL 149
               ++L +E       S F GS  IV  ++  ++  DPLLS F+
Sbjct:   114 TLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFI 156


>TAIR|locus:2155934 [details] [associations]
            symbol:HRB1 "HYPERSENSITIVE TO RED AND BLUE" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0009414 "response to water deprivation" evidence=ISS]
            [GO:0009785 "blue light signaling pathway" evidence=IMP]
            [GO:0010161 "red light signaling pathway" evidence=IMP]
            Pfam:PF05605 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AB016872 GO:GO:0010161 GO:GO:0009785 HOGENOM:HOG000238690
            InterPro:IPR008598 EMBL:AF372963 EMBL:AY133584 IPI:IPI00542988
            RefSeq:NP_199734.2 UniGene:At.64279 STRING:Q9FJ17 PaxDb:Q9FJ17
            PRIDE:Q9FJ17 DNASU:834983 EnsemblPlants:AT5G49230.1 GeneID:834983
            KEGG:ath:AT5G49230 TAIR:At5g49230 eggNOG:NOG317145
            InParanoid:Q9FJ17 OMA:CADEFDI PhylomeDB:Q9FJ17
            ProtClustDB:CLSN2699160 Genevestigator:Q9FJ17 Uniprot:Q9FJ17
        Length = 211

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 53/156 (33%), Positives = 77/156 (49%)

Query:     1 MDIDFWASRVHSAKHFSAVRASRLNTDNHSI-VDETEIDDDVKACFPCPFCYLEIEAHMI 59
             MD + W   ++    FS+  +SR       + + + E +DD+KA F CPFC  E +   +
Sbjct:     1 MDSNSW---INCPPVFSSSPSSRRYQSRSDLYLGDVEGEDDLKAEFMCPFCADEFDIVGL 57

Query:    60 CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLK-RRRKCLKSGLRNGGSAML 118
             C H+   H  E KN VCP+C   +G D   H   QH +  K +RR+ L+ G  +     L
Sbjct:    58 CCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGYSSTYLTL 117

Query:   119 GKEL-----SSFLGSPTIVRGNAPESLPDPLLSPFL 149
              KEL      S  GS T +  +  +S  DPLLS F+
Sbjct:   118 KKELREANLQSLGGSSTFIPSSNIDS--DPLLSSFM 151


>TAIR|locus:2196125 [details] [associations]
            symbol:AT1G02750 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009414 "response to water deprivation" evidence=ISS]
            [GO:0006914 "autophagy" evidence=RCA] InterPro:IPR015880
            SMART:SM00355 Pfam:PF05605 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008270 EMBL:AC022521
            EMBL:AC009525 EMBL:AK118790 EMBL:BT030081 IPI:IPI00521672
            RefSeq:NP_171775.2 UniGene:At.42581 STRING:Q8GWK1
            EnsemblPlants:AT1G02750.1 GeneID:839432 KEGG:ath:AT1G02750
            TAIR:At1g02750 eggNOG:NOG301878 HOGENOM:HOG000238690
            InParanoid:Q8GWK1 OMA:HITSHHR PhylomeDB:Q8GWK1
            ProtClustDB:CLSN2685726 Genevestigator:Q8GWK1 InterPro:IPR008598
            Uniprot:Q8GWK1
        Length = 221

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 31/106 (29%), Positives = 55/106 (51%)

Query:     1 MDIDFWA-SRVHSAKHFSAVRASRLNTDNHSIVDE-TEIDDDVKACFPCPFCYLEIEAHM 58
             M+ D W  S   S++ + +  A++  +  +  ++E  E+DDD+   +PCPFC  + +   
Sbjct:     1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDLEEFEEVDDDIAVEYPCPFCASDYDLVE 60

Query:    59 ICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
             +C H+ EEH  E  N +CP+C+  +     +H    H   LK  +K
Sbjct:    61 LCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQK 106


>TAIR|locus:2137819 [details] [associations]
            symbol:AT4G02200 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009414 "response to water deprivation" evidence=ISS]
            InterPro:IPR015880 SMART:SM00355 Pfam:PF05605 EMBL:CP002687
            GO:GO:0008270 GO:GO:0005622 InterPro:IPR008598 IPI:IPI00938744
            RefSeq:NP_001154200.1 UniGene:At.48823 UniGene:At.73013
            EnsemblPlants:AT4G02200.3 GeneID:827516 KEGG:ath:AT4G02200
            OMA:DESYSAF Uniprot:F4JH94
        Length = 228

 Score = 128 (50.1 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 38/144 (26%), Positives = 61/144 (42%)

Query:    34 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNA--------------VCPLC 79
             E E DD++   +PCPFC  + +   +C H+ EEH  +  N               +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    80 AANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPES 139
             +  +     +H   QH    KR  K       + G+    K L S +  P +   +  +S
Sbjct:    92 SRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTR---KYLQSLIDEP-LSTNHTSKS 147

Query:   140 LPDPLLSPFLCSGTLSDTKGIQKD 163
             + DPLLS      +   +K +Q D
Sbjct:   148 VLDPLLSFIYNPPSPKKSKLVQPD 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.35u 0.20s 22.55t   Elapsed:  00:00:01
  Total cpu time:  22.35u 0.20s 22.55t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:10 2013   End:  Sat May 11 04:26:11 2013

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