BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027682
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54802|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2
Length = 743
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 100 GTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFV 159
G + + G TGV AGLH YLR +CG H++W G Q+ L + P +
Sbjct: 71 GAARVRVRGSTGVAAAAGLHRYLRDFCGCHVAWS---GSQLRLPRPLPAVP----GELTE 123
Query: 160 KRPIPLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINLPLAFTGQETIWQKVF 215
P YYQN T SY+F WWDW RWE+EIDWMAL GINL LA++GQE IWQ+V+
Sbjct: 124 ATPNRYRYYQNVCTQSYSFVWWDWARWEREIDWMALNGINLALAWSGQEAIWQRVY 179
>sp|Q66145|RDRP_CMVMB RNA-directed RNA polymerase 2a OS=Cucumber mosaic virus (strain
MB-8) GN=ORF2a PE=3 SV=1
Length = 857
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 96 SYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVAS------MPKLGSF 149
SYI G ++ V V++ H Y+ W S +S+D + + M K
Sbjct: 388 SYINGN---SLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVK 444
Query: 150 PRVQDAGVFVKRPIP--LNYYQNAVTSSYT 177
P V D + + RPIP + Y++ ++TS ++
Sbjct: 445 PVVSDT-LNIDRPIPATITYHKKSITSQFS 473
>sp|Q96711|RDRP_CMVKO RNA-directed RNA polymerase 2a OS=Cucumber mosaic virus (strain
Kor) GN=ORF2a PE=3 SV=1
Length = 857
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 96 SYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVAS------MPKLGSF 149
SYI G ++ V V++ H Y+ W S +S+D + + M K
Sbjct: 388 SYINGN---SLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVK 444
Query: 150 PRVQDAGVFVKRPIP--LNYYQNAVTSSYT 177
P V D + + RP+P + Y++ ++TS ++
Sbjct: 445 PVVSDT-LNIDRPVPATITYHKKSITSQFS 473
>sp|Q83265|RDRP_CMVY RNA-directed RNA polymerase 2a OS=Cucumber mosaic virus (strain Y)
GN=ORF2a PE=3 SV=1
Length = 857
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 96 SYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVAS------MPKLGSF 149
SYI G ++ V V++ H Y+ W S +S+D + + M K
Sbjct: 388 SYINGN---SLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVK 444
Query: 150 PRVQDAGVFVKRPIP--LNYYQNAVTSSYT 177
P V D + + RP+P + Y++ ++TS ++
Sbjct: 445 PVVSDT-LNIDRPVPATITYHKKSITSQFS 473
>sp|Q66136|RDRP_CMVB RNA-directed RNA polymerase 2a OS=Cucumber mosaic virus (strain B)
GN=ORF2a PE=2 SV=1
Length = 857
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 96 SYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVAS------MPKLGSF 149
SYI G ++ V V++ H Y+ W S +S+D + + M K
Sbjct: 388 SYINGN---SLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVK 444
Query: 150 PRVQDAGVFVKRPIP--LNYYQNAVTSSYT 177
P V D + + RP+P + Y++ ++TS ++
Sbjct: 445 PVVSDT-LNIDRPVPATITYHKKSITSQFS 473
>sp|P16490|RDRP_CMVFN RNA-directed RNA polymerase 2a OS=Cucumber mosaic virus (strain
FNY) GN=ORF2a PE=3 SV=1
Length = 857
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 96 SYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVAS------MPKLGSF 149
SYI G ++ V V++ H Y+ W S +S+D + + M K
Sbjct: 388 SYINGN---SLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVK 444
Query: 150 PRVQDAGVFVKRPIP--LNYYQNAVTSSYT 177
P V D + + RP+P + Y++ ++TS ++
Sbjct: 445 PVVSDT-LNIDRPVPATITYHKKSITSQFS 473
>sp|Q83262|RDRP_CMVII RNA-directed RNA polymerase 2a OS=Cucumber mosaic virus (strain
Iizuka) GN=ORF2a PE=3 SV=1
Length = 857
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 96 SYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVAS------MPKLGSF 149
SYI G ++ V V++ H Y+ W S +S+D + + M K
Sbjct: 388 SYINGN---SLASSNFVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVK 444
Query: 150 PRVQDAGVFVKRPIP--LNYYQNAVTSSYT 177
P V D + + RP+P + Y++ ++TS ++
Sbjct: 445 PVVSDT-LNIDRPVPATITYHKKSITSQFS 473
>sp|Q6CMA5|ATP22_KLULA Mitochondrial translation factor ATP22 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ATP22 PE=3 SV=1
Length = 711
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 46 ERAPPSVQLAAAYAVLQRLLPSHYSAFQFRIISKKQCGGEYCFILRNHPSSYIR 99
+RAP SV L Y V+ S S ++R + K C YC L+NH ++Y++
Sbjct: 453 KRAPDSVALNELYIVVFDYYKSKLSPDEYRELVVK-CYKYYCDFLKNHVNTYLQ 505
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 78 SKKQCGGEYCFILRNHPS-SYIRGTPEIVISGVTGVEV-LAGLHWYLRYWC 126
S K +C +++ P S I+ PE + SG+T + + GL+W L WC
Sbjct: 494 SSKCTPSRHCRVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWC 544
>sp|Q6BKJ4|LONM_DEBHA Lon protease homolog, mitochondrial OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PIM1 PE=3 SV=2
Length = 1079
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 30 TIGVQYISRLLDIQDRERAPPSVQLAAAYAVLQRLLPSHYSAFQFRIISKKQCGGEYCFI 89
+ G+ + S L+ + E PP+V + V R+LP + +I+ K+ G + I
Sbjct: 959 SAGISFTSSLVSLAINESLPPTVAMTGEITVTGRVLP--VGGLREKILGAKRYGCD-TII 1015
Query: 90 LRNHPSSYIRGTPEIVISGVTGVEVLAGLHWY 121
+ + P+ V GVT + V WY
Sbjct: 1016 FPKDIENELEEIPDEVKDGVTFIPV----EWY 1043
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,709,941
Number of Sequences: 539616
Number of extensions: 3244427
Number of successful extensions: 7730
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7728
Number of HSP's gapped (non-prelim): 11
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)