Query 027682
Match_columns 220
No_of_seqs 127 out of 250
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a4a_A Alpha-N-acetylglucosami 100.0 1.7E-59 5.7E-64 471.3 15.4 154 52-220 192-347 (914)
2 2cho_A Glucosaminidase, hexosa 92.9 0.6 2E-05 46.3 10.7 85 84-201 77-161 (716)
3 2v5d_A O-GLCNACASE NAGJ; famil 86.2 2.3 7.8E-05 42.0 8.6 84 84-200 99-182 (737)
4 2v5c_A O-GLCNACASE NAGJ; glyco 85.9 2.3 7.9E-05 41.2 8.3 84 84-200 99-182 (594)
5 3gh5_A HEX1, beta-hexosaminida 85.5 4.8 0.00016 38.5 10.2 110 70-200 106-215 (525)
6 1jak_A Beta-N-acetylhexosamini 84.0 7.5 0.00026 36.8 10.8 106 71-200 85-190 (512)
7 1jek_B ENV polyprotein; envelo 79.8 0.58 2E-05 29.9 1.0 13 182-194 1-13 (36)
8 3rcn_A Beta-N-acetylhexosamini 74.5 24 0.00082 33.7 11.0 105 71-200 66-171 (543)
9 3vh7_B CP32M; 6-helix bundle, 63.2 2.7 9.1E-05 25.8 1.2 11 182-192 9-19 (34)
10 2z2t_D Fusion inhibitor peptid 62.9 2.5 8.4E-05 26.3 1.0 12 182-193 1-12 (36)
11 3vgx_D Envelope glycoprotein G 62.3 2.9 9.8E-05 25.2 1.2 11 182-192 7-17 (32)
12 3vie_B Sifuvirtide; 6-helix bu 59.5 3.4 0.00012 25.9 1.2 11 182-192 2-12 (37)
13 3o3y_A Chimeric alpha+alpha/be 55.9 3.8 0.00013 26.1 0.9 11 182-192 3-13 (40)
14 1c7s_A Beta-N-acetylhexosamini 43.3 55 0.0019 33.2 7.5 86 85-200 259-344 (858)
15 2gjx_A Beta-hexosaminidase alp 40.2 90 0.0031 29.3 8.1 89 84-201 90-179 (507)
16 1gqi_A Alpha-glucuronidase; (a 39.7 22 0.00075 35.5 3.9 41 84-127 93-133 (708)
17 1df4_A HIV-1 envelope glycopro 37.2 11 0.00039 26.7 1.1 11 182-192 40-50 (68)
18 1l8n_A Alpha-D-glucuronidase; 35.8 44 0.0015 33.2 5.3 41 84-127 87-127 (679)
19 3ozo_A N-acetylglucosaminidase 35.6 3E+02 0.01 26.3 11.9 96 83-200 124-220 (572)
20 1now_A Beta-hexosaminidase bet 35.3 1.1E+02 0.0038 28.7 7.9 89 85-201 97-185 (507)
21 1jq0_A GP41 envelope protein; 31.8 16 0.00054 27.0 1.2 12 182-193 46-57 (84)
22 2x7r_B Transmembrane protein G 31.3 16 0.00055 25.5 1.0 12 182-193 7-18 (63)
23 1hji_B NUN-protein; bacterioph 30.7 25 0.00087 20.4 1.6 14 184-197 13-26 (26)
24 2c0h_A Mannan endo-1,4-beta-ma 29.6 17 0.00059 30.7 1.2 21 183-203 44-64 (353)
25 3vup_A Beta-1,4-mannanase; TIM 28.7 19 0.00064 29.0 1.2 24 181-204 39-62 (351)
26 3p30_A HIV-1 GP41; HIV, GP41, 28.3 18 0.00062 27.3 1.0 12 182-193 54-65 (96)
27 2epl_X N-acetyl-beta-D-glucosa 25.2 4.7E+02 0.016 25.2 10.8 94 71-201 26-119 (627)
28 4aw7_A GH86A beta-porphyranase 22.9 27 0.00091 34.2 1.2 30 173-202 190-225 (591)
29 3lqv_P Splicing factor 3B subu 20.9 32 0.0011 22.2 0.9 13 185-202 11-23 (39)
30 1env_A HIV-1 envelope protein 20.7 31 0.001 27.3 1.0 12 182-193 85-96 (123)
31 3enc_A Protein PCC1; dimerizat 20.3 1E+02 0.0035 22.6 3.8 22 103-124 56-77 (87)
32 1uuq_A Mannosyl-oligosaccharid 20.2 46 0.0016 29.8 2.2 24 181-204 59-82 (440)
No 1
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=100.00 E-value=1.7e-59 Score=471.30 Aligned_cols=154 Identities=26% Similarity=0.533 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHhhcCCC-CCceEEEEeecCCCCCceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCcee
Q 027682 52 VQLAAAYAVLQRLLPSH-YSAFQFRIISKKQCGGEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHI 130 (220)
Q Consensus 52 ~q~~aa~~ll~Rllp~~-~~~F~~~i~~~~~~~g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~i 130 (220)
.-+.++++||+|+||+| +++|+|++.+. ++|.|+|+|++. .+ +||+|+|||+|++|+|||||||||||+||
T Consensus 192 ~~~~~~~~li~R~l~~~~~~~F~~~~~~~--~~~~d~F~~~~~----~~--gki~I~Gns~va~a~Gl~~YLk~~c~~~~ 263 (914)
T 4a4a_A 192 KTLNEIKNLVGRVIGREFKDKFIFEIRDQ--LNGNDVFEVSDS----GD--GKVLIKGNNGVSLASGFNYYLKNYCNVSY 263 (914)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEECCC--BTTBCEEEEEEC----SS--SCEEEEESSHHHHHHHHHHHHHHHSCCBC
T ss_pred cchHHHHHHHHhhcCccccceEEEEEecC--CCCCceEEEeeC----CC--CeEEEEeCCHHHHHHHHHHHHHHHhCcee
Confidence 44579999999999997 57899999753 368999999842 23 69999999999999999999999999999
Q ss_pred e-ecCCCCcccccCCCCCCCCCCCCCceeEecccceeeecccccCCccccccChhhHhhhHhHHHhcCCCccccccchHH
Q 027682 131 S-WDKTGGVQVASMPKLGSFPRVQDAGVFVKRPIPLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINLPLAFTGQET 209 (220)
Q Consensus 131 S-W~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINlpLA~~GqEa 209 (220)
| |+ |+|++ +|.+||.|++ +|++++|++|||||||||||||||||||+|||||||||||||||||||++|||+
T Consensus 264 s~w~---g~~l~---lP~~LP~v~~-~v~~~t~~~~RY~~N~cT~sYT~~~WdW~rWEreIDWMAL~GiNlpLa~~GqEa 336 (914)
T 4a4a_A 264 NPIM---GSNLK---MPETMPSVGE-RVVIDTPYEHRYALNFCTYSYTMSFWDWDQYEEFLDWCAMNGVNLVLDIIGQEE 336 (914)
T ss_dssp CTTT---CCBCC---CCSSCCCCCS-CEEEECSCSEEEECCTTHHHHTTTTCCHHHHHHHHHHHHHTTCCEEECCTTHHH
T ss_pred eccC---CCccc---CCcCCCCCCC-ceEeccCCceEEEecccCCcccccccChHHHHHHHHHHHHhCCchhhhhhhhHH
Confidence 9 66 55874 6889999997 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 027682 210 IWQKVFQVAFC 220 (220)
Q Consensus 210 IW~~V~~~~~~ 220 (220)
||+|||+++|.
T Consensus 337 vw~~v~~~lG~ 347 (914)
T 4a4a_A 337 VLRRTLNEFGY 347 (914)
T ss_dssp HHHHHHGGGTC
T ss_pred HHHHHHHHcCC
Confidence 99999999984
No 2
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=92.92 E-value=0.6 Score=46.26 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=58.5
Q ss_pred CceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEeccc
Q 027682 84 GEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRPI 163 (220)
Q Consensus 84 g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~ 163 (220)
+.+.|+|+-. . +.|+|+|++...+.+|+...+.-.-.. .||.+ .|+=.-.+
T Consensus 77 ~~E~Y~L~i~-----~--~~i~I~a~~~~G~fyg~qTL~Qll~~~-------------------~lp~~---~I~D~P~f 127 (716)
T 2cho_A 77 HKEGYYLSVN-----E--KEIVLAGNDERGTYYALQTFAQLLKDG-------------------KLPEV---EIKDYPSV 127 (716)
T ss_dssp STTCEEEEEC-----S--SEEEEEESSHHHHHHHHHHHHHHCBTT-------------------EEEEE---EEEECCSS
T ss_pred CCCceEEEEe-----C--CEEEEEEcCHHHHHHHHHHHHHHhhcC-------------------CCCce---EEEECCCC
Confidence 3567888742 2 479999999999999998765533110 12322 13444455
Q ss_pred ceeeecccccCCccccccChhhHhhhHhHHHhcCCCcc
Q 027682 164 PLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINLP 201 (220)
Q Consensus 164 ~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINlp 201 (220)
+||=++ -++...+|.-+...+.||+||+++.|.=
T Consensus 128 ~~RG~m----~d~~r~~~s~~~ik~~id~ma~~KlN~~ 161 (716)
T 2cho_A 128 RYRGVV----EGFYGTPWSHQARLSQLKFYGKNKMNTY 161 (716)
T ss_dssp SEEEEE----ECCSSSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cccccc----cCcCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 677444 4444558999999999999999999973
No 3
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=86.24 E-value=2.3 Score=41.96 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=58.7
Q ss_pred CceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEeccc
Q 027682 84 GEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRPI 163 (220)
Q Consensus 84 g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~ 163 (220)
+.+.|+|+-. . +.|+|+|++...+.+|+...+.-.-. | .||.+. |+=.-.+
T Consensus 99 ~~e~Y~L~i~-----~--~~i~I~a~~~~G~~~g~~Tl~Ql~~~---------~----------~~p~~~---I~D~P~f 149 (737)
T 2v5d_A 99 KEEGYALVSN-----D--GKIAIEGKDGDGTFYGVQTFKQLVKE---------S----------NIPEVN---ITDYPTV 149 (737)
T ss_dssp CTTCEEEEEC-----S--SEEEEEESSHHHHHHHHHHHHHHCSS---------S----------EECCEE---EEECCSS
T ss_pred CCCceEEEEe-----C--CeEEEEECCHhHHHHHHHHHHHHhhc---------C----------CCCceE---EEECCCC
Confidence 4566888742 2 47999999999999998876443211 1 233321 4444556
Q ss_pred ceeeecccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 164 PLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 164 ~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
+||=++ ..++.-||.-+...+.||.||++++|.
T Consensus 150 ~~RG~m----~d~~r~~~~~~~~~~~id~ma~~K~N~ 182 (737)
T 2v5d_A 150 SARGIV----EGFYGTPWTHQDRLDQIKFYGENKLNT 182 (737)
T ss_dssp SEEEEE----CCCSSSCCCHHHHHHHHHHHHHTTCCE
T ss_pred ceeeee----cccCCCCCCHHHHHHHHHHHHHhCCeE
Confidence 777655 444456799999999999999999996
No 4
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=85.86 E-value=2.3 Score=41.23 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=58.4
Q ss_pred CceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEeccc
Q 027682 84 GEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRPI 163 (220)
Q Consensus 84 g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~ 163 (220)
+.+.|+|+-. + +.|+|+|++...+.+|+...+.-.-. | .+|.+. |+=.-.+
T Consensus 99 ~~E~Y~L~i~-----~--~~i~I~a~~~~G~fyg~qTL~Qll~~---------~----------~lp~~~---I~D~P~f 149 (594)
T 2v5c_A 99 KEEGYALVSN-----D--GKIAIEGKDGDGTFYGVQTFKQLVKE---------S----------NIPEVN---ITDYPTV 149 (594)
T ss_dssp CTTCEEEEEE-----T--TEEEEEESSHHHHHHHHHHHHHHCBT---------T----------EECCEE---EEECCSS
T ss_pred CCCCeEEEEe-----C--CEEEEEECCHHHHHHHHHHHHHHhhc---------C----------CCCceE---EEECCCC
Confidence 4566888642 2 47999999999999998876443211 1 123322 4444556
Q ss_pred ceeeecccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 164 PLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 164 ~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
+||=++ ..++.-||.-+...+.||.||+++.|.
T Consensus 150 ~~RG~m----lD~~R~~~~~~~ik~~id~ma~~KlN~ 182 (594)
T 2v5c_A 150 SARGIV----EGFYGTPWTHQDRLDQIKFYGENKLNT 182 (594)
T ss_dssp SEEEEE----CCCCSSCCCHHHHHHHHHHHHHTTCCE
T ss_pred Ceecee----eeecCCCCCHHHHHHHHHHHHHhCCcE
Confidence 777655 444556799999999999999999996
No 5
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=85.52 E-value=4.8 Score=38.47 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=64.7
Q ss_pred CceEEEEeecCCCCCceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCC
Q 027682 70 SAFQFRIISKKQCGGEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSF 149 (220)
Q Consensus 70 ~~F~~~i~~~~~~~g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~L 149 (220)
..+.|++.+.....+.+.|+|+-.+ +.|+|+|++...+.+|+.-.+.-.- .+. . +..... -.+..+
T Consensus 106 ~~I~l~~~~~~~~~~~E~Y~L~v~~-------~~i~I~a~~~~G~~~glqTL~QLl~-~~~--~---~~~~~~-g~~~~l 171 (525)
T 3gh5_A 106 GSIYLTTVGGNAALGNEGYDLITTS-------NQVTLTANKPEGVFRGNQTLLQLLP-AGI--E---KNTVVS-GVQWVI 171 (525)
T ss_dssp TEEEEECTTCCGGGTTTCEEEEECS-------SEEEEEESSHHHHHHHHHHHHHHSC-TTT--T---CSSCCC-SCCCEE
T ss_pred CcEEEEEcCCCCCCCCCceEEEEeC-------CEEEEEECCHHHHHHHHHHHHHHHh-hhc--c---cccccc-Ccceec
Confidence 3466666421112345778887431 4799999999999999988665332 111 0 001100 001134
Q ss_pred CCCCCCceeEecccceeeecccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 150 PRVQDAGVFVKRPIPLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 150 P~v~~~~v~~~s~~~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
|.+. |+=.-.++||=.+=.|- --|..=+.-+|.||.||++++|.
T Consensus 172 p~~~---I~D~Prf~~RG~mLDvs----R~f~~~~~ik~~id~mA~~KlN~ 215 (525)
T 3gh5_A 172 PHSN---ISDKPEYEYRGLMLDVA----RHFFTVDEVKRQIDLASQYKINK 215 (525)
T ss_dssp EEEE---EEECCSCSEEEEEEECS----SSCCCHHHHHHHHHHHHTTTCCE
T ss_pred cceE---EeecCCcceeccccCCC----CCCCCHHHHHHHHHHHHHcCCcE
Confidence 5432 44555677884443332 22556788999999999999995
No 6
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=84.03 E-value=7.5 Score=36.77 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=63.1
Q ss_pred ceEEEEeecCCCCCceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCC
Q 027682 71 AFQFRIISKKQCGGEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFP 150 (220)
Q Consensus 71 ~F~~~i~~~~~~~g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP 150 (220)
.+.+.+... ..+.+.|+|+-. . +.|+|+|++...+.+|+...+.-.- .+. +.. .... .+..+|
T Consensus 85 ~i~l~~~~~--~~~~E~Y~L~v~-----~--~~i~I~a~~~~G~~~g~qTL~Ql~~-~~~--~~~---~~~~--~~~~lp 147 (512)
T 1jak_A 85 GIRLRLAGG--PYGDEGYRLDSG-----P--AGVTITARKAAGLFHGVQTLRQLLP-PAV--EKD---SAQP--GPWLVA 147 (512)
T ss_dssp SEEEEECCS--TTTTTCEEEEEE-----T--TEEEEEESSHHHHHHHHHHHHHHSC-GGG--GCS---SCCC--CCCEEC
T ss_pred eEEEEECCC--CCCCcCeEEEEe-----C--CEEEEEEcCHHHHHHHHHHHHHHhh-hhh--ccc---cccc--Cccccc
Confidence 466666322 134567888742 1 4799999999999999988654332 111 000 0000 011244
Q ss_pred CCCCCceeEecccceeeecccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 151 RVQDAGVFVKRPIPLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 151 ~v~~~~v~~~s~~~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
.+. |+=.-.++||=.+=.| +--|+.=+...|.||.||++++|.
T Consensus 148 ~~~---I~D~Prf~~RG~mLD~----aR~f~~~~~ik~~id~ma~~KlN~ 190 (512)
T 1jak_A 148 GGT---IEDTPRYAWRSAMLDV----SRHFFGVDEVKRYIDRVARYKYNK 190 (512)
T ss_dssp CEE---EEECCSCSEEEEEEEC----SSSCCCHHHHHHHHHHHHTTTCCE
T ss_pred ceE---EeecCCCCccceeecc----CCCCCCHHHHHHHHHHHHHcCCcE
Confidence 432 4445566788444333 222556688999999999999995
No 7
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=79.75 E-value=0.58 Score=29.91 Aligned_cols=13 Identities=38% Similarity=1.101 Sum_probs=10.1
Q ss_pred ChhhHhhhHhHHH
Q 027682 182 DWKRWEKEIDWMA 194 (220)
Q Consensus 182 dW~rWErEIDWMA 194 (220)
.|.+||||||=.-
T Consensus 1 TWqqWereI~~~t 13 (36)
T 1jek_B 1 XWQQWEEEIEQHE 13 (36)
T ss_dssp -CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 4999999998543
No 8
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=74.54 E-value=24 Score=33.73 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=62.4
Q ss_pred ceEEEEeecCCCCCceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCC
Q 027682 71 AFQFRIISKKQCGGEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFP 150 (220)
Q Consensus 71 ~F~~~i~~~~~~~g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP 150 (220)
.+.|++.+ . .+.+.|+|+- + +.|+|+|++...+.+|+.-.+.-.- .++ ..+. .... -....+|
T Consensus 66 ~I~l~~~~-~--l~~E~Y~L~v-~-------~~i~I~a~~~~G~f~glqTL~QLl~-~~~-~~~~---~~~~-~~~~~ip 128 (543)
T 3rcn_A 66 GIRLLLDP-S--LDAEAYRLEV-S-------DAVVISAGGAAGAFYGAQTLLQLLG-PAA-LRQA---PVVA-VEGWSVP 128 (543)
T ss_dssp SEEEEECT-T--SCTTCEEEEE-S-------SSEEEEESSHHHHHHHHHHHHHHHC-GGG-GSSS---CCSC-CSCEEEE
T ss_pred cEEEEeCC-C--CCCCceEEEE-C-------CeEEEEECCHHHHHHHHHHHHHHHh-hhc-cccc---cccc-Ccceecc
Confidence 57777754 2 3567788875 2 3699999999999999988665332 111 1110 0000 0000234
Q ss_pred CCCCCceeEecccceee-ecccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 151 RVQDAGVFVKRPIPLNY-YQNAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 151 ~v~~~~v~~~s~~~~RY-y~N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
.+. |+=.-.++||= .+-+.-. |..=+.=.|.||-||++.+|.
T Consensus 129 ~~~---I~D~Prf~~RG~mLDvsRh-----f~~~~~ik~~ID~MA~~KlN~ 171 (543)
T 3rcn_A 129 RVS---VEDKPRFGYRGTMLDVARH-----FMPKDNVLRFIEVMAMHKLNV 171 (543)
T ss_dssp EEE---EEECCSCSEEEEEEETTTS-----CCCHHHHHHHHHHHHHTTCCE
T ss_pred CEE---EEecCCCCccccccccCCC-----ccCHHHHHHHHHHHHHcCCcE
Confidence 332 44455667883 3344333 333477899999999999995
No 9
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_D
Probab=63.22 E-value=2.7 Score=25.76 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=9.5
Q ss_pred ChhhHhhhHhH
Q 027682 182 DWKRWEKEIDW 192 (220)
Q Consensus 182 dW~rWErEIDW 192 (220)
.|..||||||=
T Consensus 9 TW~qWekei~n 19 (34)
T 3vh7_B 9 TWMEWEREIEN 19 (34)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 58999999983
No 10
>2z2t_D Fusion inhibitor peptide SC34EK; coiled-coil, viral protein/inhibitor complex; 2.10A {Synthetic}
Probab=62.92 E-value=2.5 Score=26.34 Aligned_cols=12 Identities=25% Similarity=1.000 Sum_probs=9.4
Q ss_pred ChhhHhhhHhHH
Q 027682 182 DWKRWEKEIDWM 193 (220)
Q Consensus 182 dW~rWErEIDWM 193 (220)
.|..||||||=+
T Consensus 1 TW~qWekei~n~ 12 (36)
T 2z2t_D 1 XWLEWDRKIEEY 12 (36)
T ss_dssp -CHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 489999999843
No 11
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1}
Probab=62.28 E-value=2.9 Score=25.23 Aligned_cols=11 Identities=36% Similarity=1.181 Sum_probs=9.4
Q ss_pred ChhhHhhhHhH
Q 027682 182 DWKRWEKEIDW 192 (220)
Q Consensus 182 dW~rWErEIDW 192 (220)
.|..||||||=
T Consensus 7 TW~qw~kei~n 17 (32)
T 3vgx_D 7 TWMEWDREINN 17 (32)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 48999999983
No 12
>3vie_B Sifuvirtide; 6-helix bundle, membrane fusion inhibition, HIV, viral prote antiviral protein complex; 1.80A {Human immunodeficiency virus 1}
Probab=59.52 E-value=3.4 Score=25.85 Aligned_cols=11 Identities=45% Similarity=1.298 Sum_probs=9.5
Q ss_pred ChhhHhhhHhH
Q 027682 182 DWKRWEKEIDW 192 (220)
Q Consensus 182 dW~rWErEIDW 192 (220)
.|..||||||=
T Consensus 2 TW~qWekei~n 12 (37)
T 3vie_B 2 SWETWEREIEN 12 (37)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 58999999984
No 13
>3o3y_A Chimeric alpha+alpha/beta peptide based on the CH sequence of GP41; HIV fusion inhibitor, HIV GP41, mixed alpha-residue / beta-R backbone; HET: XPC B3E XCP; 1.35A {Synthetic} PDB: 3f4y_D 3g7a_B* 4dzu_B 4dzv_B* 3o42_B* 3o3z_B* 3f4z_A* 3f50_B* 3o43_B* 3o40_B*
Probab=55.90 E-value=3.8 Score=26.09 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=9.3
Q ss_pred ChhhHhhhHhH
Q 027682 182 DWKRWEKEIDW 192 (220)
Q Consensus 182 dW~rWErEIDW 192 (220)
.|..||||||=
T Consensus 3 TW~qWekeI~n 13 (40)
T 3o3y_A 3 TWEAWDXAIAX 13 (40)
T ss_dssp CTTTHHHHHHH
T ss_pred cHHHhhhhhhh
Confidence 48999999984
No 14
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=43.27 E-value=55 Score=33.20 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=54.2
Q ss_pred ceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEecccc
Q 027682 85 EYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRPIP 164 (220)
Q Consensus 85 ~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~~ 164 (220)
.+.|+|+-.+ +.|+|+|++...+.+|+.-.+.-.- . + +.. .+|.+. |+=.-.++
T Consensus 259 ~E~Y~L~v~~-------~~i~I~a~~~~G~fyglqTL~QLl~-~----~---~~~--------~ip~~~---I~D~Prf~ 312 (858)
T 1c7s_A 259 SGAYELKIGK-------KEAQVIGFDQAGVFYGLQSILSLVP-S----D---GSG--------KIATLD---ASDAPRFP 312 (858)
T ss_dssp TTCEEEEECS-------SCEEEEESSHHHHHHHHHHHHHHSC-T----T---SCC--------EEEEEE---EEECCSCS
T ss_pred CCceEEEEeC-------CeEEEEEecccceeHHHHHHHHHhh-h----c---CCc--------cccceE---EEeCCCcc
Confidence 4678887431 3699999999999999887654321 1 1 100 233321 44445566
Q ss_pred eeeecccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 165 LNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 165 ~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
||=.+=.|- --|+.=+.-.|.||.||++++|.
T Consensus 313 ~RG~mLDvs----R~f~~~~~ik~~Id~mA~~KlN~ 344 (858)
T 1c7s_A 313 YRGIFLDVA----RNFHKKDAVLRLLDQMAAYKLNK 344 (858)
T ss_dssp EEEEEEECS----SSCCCHHHHHHHHHHHHHTTCCE
T ss_pred eeeeeecCC----CCCCCHHHHHHHHHHHHHhCCcE
Confidence 774433332 22355688999999999999995
No 15
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=40.21 E-value=90 Score=29.30 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=54.8
Q ss_pred CceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEeccc
Q 027682 84 GEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRPI 163 (220)
Q Consensus 84 g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~ 163 (220)
+.+.|+|+-.+ +.|+|+|++...+.+|+...+.-. .-+.. | .. .+|.+. |+=.-.+
T Consensus 90 ~~E~Y~L~v~~-------~~i~I~a~~~~G~~~g~qTl~QL~-----~~~~~-~-~~-------~ip~~~---I~D~P~f 145 (507)
T 2gjx_A 90 SVENYTLTIND-------DQCLLLSETVWGALRGLETFSQLV-----WKSAE-G-TF-------FINKTE---IEDFPRF 145 (507)
T ss_dssp CCCCEEEEESS-------SCEEEEESSHHHHHHHHHHHHHHE-----EECTT-C-CE-------EEECEE---EEECCSC
T ss_pred CCCCeEEEEeC-------CeEEEEECCHHHHHHHHHHHHHHh-----hhccC-C-ce-------eeccEE---EeecCCc
Confidence 45679887432 369999999999999988755422 11111 1 11 133322 4444556
Q ss_pred ceeeec-ccccCCccccccChhhHhhhHhHHHhcCCCcc
Q 027682 164 PLNYYQ-NAVTSSYTFAWWDWKRWEKEIDWMALQGINLP 201 (220)
Q Consensus 164 ~~RYy~-N~cTfsYS~awWdW~rWErEIDWMAL~GINlp 201 (220)
+||=.+ -+.-. |..=+.-+|.||-||++++|.=
T Consensus 146 ~~RG~mlD~aR~-----f~~~~~ik~~id~mA~~KlN~l 179 (507)
T 2gjx_A 146 PHRGLLLDTSRH-----YLPLSSILDTLDVMAYNKLNVF 179 (507)
T ss_dssp SEEEEEEETTTS-----CCCHHHHHHHHHHHHHTTCCEE
T ss_pred ceeeeeeccCCC-----CCCHHHHHHHHHHHHHhCCceE
Confidence 777433 33322 2334678999999999999963
No 16
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase; 1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2 PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Probab=39.69 E-value=22 Score=35.47 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=31.6
Q ss_pred CceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcC
Q 027682 84 GEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCG 127 (220)
Q Consensus 84 g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~ 127 (220)
+.|-|.|...+. +|.+.|+|.|+|...+.+|..+|||....
T Consensus 93 geEGY~I~t~~~---~~~~~lvIaG~T~rGLLYGaFhLLRllq~ 133 (708)
T 1gqi_A 93 GAEGYLLEQTRI---NKRHVVIVAANSDVGVLYGSFHLLRLIQT 133 (708)
T ss_dssp TTTCEEEEEEEE---TTEEEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEeccc---CCCceEEEEeCCCceehhhHHHHHHHHhc
Confidence 457788864321 12257899999999999999999999865
No 17
>1df4_A HIV-1 envelope glycoprotein GP41; membrane fusion, protein-detergent interaction; 1.45A {Human immunodeficiency virus 1} SCOP: h.3.2.1 PDB: 1df5_A 1szt_A 2ot5_A 1i5y_A 1qr9_A 1k34_A 1k33_A 1i5x_A 1dlb_A 1qr8_A 3g7a_A* 3vie_A 2zzo_N 1aik_N
Probab=37.24 E-value=11 Score=26.70 Aligned_cols=11 Identities=36% Similarity=1.184 Sum_probs=9.2
Q ss_pred ChhhHhhhHhH
Q 027682 182 DWKRWEKEIDW 192 (220)
Q Consensus 182 dW~rWErEIDW 192 (220)
.|..||||||=
T Consensus 40 TW~qwdkei~n 50 (68)
T 1df4_A 40 GWMEWDREINN 50 (68)
T ss_dssp CCHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67999999973
No 18
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A* 1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Probab=35.84 E-value=44 Score=33.24 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=31.0
Q ss_pred CceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcC
Q 027682 84 GEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCG 127 (220)
Q Consensus 84 g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~ 127 (220)
+.|-|.|.+... +|.+.|+|.|+|...+.+|.++|||....
T Consensus 87 geEGY~I~s~~~---~g~~~lvIaG~T~rGLLYGaFhLLRllq~ 127 (679)
T 1l8n_A 87 HPEGYVIRSDVD---DGPFRIYIIGKTDAGVLYGVFHFLRLLQM 127 (679)
T ss_dssp STTCEEEEECCC-----CCEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEeecc---CCcceEEEEeCCCcchhhHHHHHHHHHhc
Confidence 557898873211 11147999999999999999999998865
No 19
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=35.62 E-value=3e+02 Score=26.35 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEecc
Q 027682 83 GGEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRP 162 (220)
Q Consensus 83 ~g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~ 162 (220)
+..+.|+++-.+. +++...|.|+|++...+.+|+.-.+.- +..+..++... .+|.+ .|+=.-.
T Consensus 124 ~~~E~Y~L~V~~~--~~~~~~i~I~a~~~~G~~~glqTL~QL-----l~~~~~~~~~~-------~~p~~---~I~D~Pr 186 (572)
T 3ozo_A 124 EMDESYGLRVSPS--GADRVNATITANSFFGMRHGLETLSQL-----FVFDDIRDHLL-------MVRDV---NISDKPV 186 (572)
T ss_dssp TCCCCEEEEEEEE--TTTEEEEEEEESSHHHHHHHHHHHHTT-----EEEETTTTEEE-------EESSE---EEEECCS
T ss_pred CCCCCeEEEeccC--CCcceEEEEEECCHHHHHHHHHHHHHH-----Hhhcccccccc-------ccCce---eEEecCC
Confidence 3456788864320 111026899999999999998876542 22222111111 12332 1444456
Q ss_pred cceeeec-ccccCCccccccChhhHhhhHhHHHhcCCCc
Q 027682 163 IPLNYYQ-NAVTSSYTFAWWDWKRWEKEIDWMALQGINL 200 (220)
Q Consensus 163 ~~~RYy~-N~cTfsYS~awWdW~rWErEIDWMAL~GINl 200 (220)
++||=.+ -+.-. |..=+.-+|.||-||++++|.
T Consensus 187 f~~RG~mLDvsR~-----f~~~~~ik~~id~mA~~KlN~ 220 (572)
T 3ozo_A 187 YPYRGILLDTARN-----YYSIESIKRTIEAMAAVKLNT 220 (572)
T ss_dssp CSEEEEEEECSSS-----CCCHHHHHHHHHHHHHTTCCE
T ss_pred CccccceeccCCC-----CCCHHHHHHHHHHHHHcCCce
Confidence 6777433 33222 334567899999999999995
No 20
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=35.25 E-value=1.1e+02 Score=28.70 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=55.2
Q ss_pred ceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCCCCCCCceeEecccc
Q 027682 85 EYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFPRVQDAGVFVKRPIP 164 (220)
Q Consensus 85 ~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP~v~~~~v~~~s~~~ 164 (220)
.+.|+|+-.+ +.|+|+|++...+.+|+...+.-. .-+++ | .. .+|.+. |+=.-.++
T Consensus 97 ~E~Y~L~v~~-------~~i~I~a~~~~G~~~g~qTl~QL~-----~~~~~-~-~~-------~ip~~~---I~D~P~f~ 152 (507)
T 1now_A 97 DESYTLLVKE-------PVAVLKANRVWGALRGLETFSQLV-----YQDSY-G-TF-------TINEST---IIDSPRFS 152 (507)
T ss_dssp CCCEEEEECS-------SEEEEEESSHHHHHHHHHHHHHHC-----EECTT-S-CE-------EEEEEE---EEECCSCS
T ss_pred CcceEEEEcC-------CeEEEEECCHHHHHHHHHHHHHHH-----hhccC-c-eE-------EeccEE---EEecCccc
Confidence 5779887432 479999999999999988765432 11111 1 11 133322 44445567
Q ss_pred eeeecccccCCccccccChhhHhhhHhHHHhcCCCcc
Q 027682 165 LNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINLP 201 (220)
Q Consensus 165 ~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINlp 201 (220)
||=.+=.|- --|+.=+.-+|.||.||++++|.=
T Consensus 153 ~RG~mlD~a----R~f~~~~~ik~~id~ma~~KlN~l 185 (507)
T 1now_A 153 HRGILIDTS----RHYLPVKIILKTLDAMAFNKFNVL 185 (507)
T ss_dssp EEEEEEESS----SSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eeeeeeccC----CCCCCHHHHHHHHHHHHHhCCcEE
Confidence 774442222 223455678999999999999953
No 21
>1jq0_A GP41 envelope protein; SIV, HIV-1, membrane fusion, six-helix bundle, trimer- hairpins, viral protein; 1.70A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1jpx_A
Probab=31.84 E-value=16 Score=27.00 Aligned_cols=12 Identities=25% Similarity=1.379 Sum_probs=9.6
Q ss_pred ChhhHhhhHhHH
Q 027682 182 DWKRWEKEIDWM 193 (220)
Q Consensus 182 dW~rWErEIDWM 193 (220)
.|..||||||=+
T Consensus 46 TW~qWdrei~ny 57 (84)
T 1jq0_A 46 GWQEWKRKVDFL 57 (84)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 389999999743
No 22
>2x7r_B Transmembrane protein GP41; envelope glycoprotein, membrane anchored fusion protein, viral protein; 2.00A {Human immunodeficiency virus type 1LW12}
Probab=31.34 E-value=16 Score=25.54 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.6
Q ss_pred ChhhHhhhHhHH
Q 027682 182 DWKRWEKEIDWM 193 (220)
Q Consensus 182 dW~rWErEIDWM 193 (220)
.|..||||||=.
T Consensus 7 TW~qWekeI~ny 18 (63)
T 2x7r_B 7 DKMEWDREINNY 18 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 489999999743
No 23
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=30.66 E-value=25 Score=20.42 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=10.8
Q ss_pred hhHhhhHhHHHhcC
Q 027682 184 KRWEKEIDWMALQG 197 (220)
Q Consensus 184 ~rWErEIDWMAL~G 197 (220)
.|||+.|...--||
T Consensus 13 arwekriayalkng 26 (26)
T 1hji_B 13 ARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC
Confidence 58999998766555
No 24
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Probab=29.56 E-value=17 Score=30.70 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=18.8
Q ss_pred hhhHhhhHhHHHhcCCCcccc
Q 027682 183 WKRWEKEIDWMALQGINLPLA 203 (220)
Q Consensus 183 W~rWErEIDWMAL~GINlpLA 203 (220)
+++||+.|+.|+-.|+|+.=.
T Consensus 44 ~~~~~~d~~~~k~~G~N~vR~ 64 (353)
T 2c0h_A 44 KSTFESTLSDMQSHGGNSVRV 64 (353)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHcCCCEEEE
Confidence 789999999999999998643
No 25
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=28.70 E-value=19 Score=29.02 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=20.4
Q ss_pred cChhhHhhhHhHHHhcCCCccccc
Q 027682 181 WDWKRWEKEIDWMALQGINLPLAF 204 (220)
Q Consensus 181 WdW~rWErEIDWMAL~GINlpLA~ 204 (220)
.+-+++|++|+.|+-+|+|+.=.+
T Consensus 39 ~~~~~~~~~l~~~k~~G~N~vRv~ 62 (351)
T 3vup_A 39 RNKNRIEPEFKKLHDAGGNSMRLW 62 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEC
Confidence 467899999999999999987544
No 26
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system; 3.30A {Human immunodeficiency virus 1}
Probab=28.26 E-value=18 Score=27.28 Aligned_cols=12 Identities=42% Similarity=1.058 Sum_probs=9.2
Q ss_pred ChhhHhhhHhHH
Q 027682 182 DWKRWEKEIDWM 193 (220)
Q Consensus 182 dW~rWErEIDWM 193 (220)
.|..||||||=.
T Consensus 54 TW~qWekeI~ny 65 (96)
T 3p30_A 54 GWLQWDKEISNY 65 (96)
T ss_dssp -CHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 379999999843
No 27
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=25.21 E-value=4.7e+02 Score=25.22 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=55.7
Q ss_pred ceEEEEeecCCCCCceeEEEecCCCCCCCCCCeEEEEecCHHHHHHHHHHHHHHhcCceeeecCCCCcccccCCCCCCCC
Q 027682 71 AFQFRIISKKQCGGEYCFILRNHPSSYIRGTPEIVISGVTGVEVLAGLHWYLRYWCGSHISWDKTGGVQVASMPKLGSFP 150 (220)
Q Consensus 71 ~F~~~i~~~~~~~g~d~F~i~~~~~~~~~g~~kI~I~G~s~vala~Gln~YLK~~c~~~iSW~~~~G~ql~~lp~P~~LP 150 (220)
...+++... +.+.|+++-. . +.|+|+|++...+-+|+...+. -...+ + +
T Consensus 26 ~~~i~~~~~----~~E~Y~L~i~-----~--~~i~I~a~~~~G~~~glqTL~Q-L~~~~-------~------------~ 74 (627)
T 2epl_X 26 EIAVSLVTD----SATSIKVEGR-----Q--GYYQVSYKQPHQLYRALALLSA-ALRSG-------Q------------D 74 (627)
T ss_dssp SCEEEEEEC----SSSSEEEEEE-----T--TEEEEEESSTTHHHHHHHHHHH-HHHTT-------C------------S
T ss_pred CceeEEEeC----CCCcEEEEEe-----C--CEEEEEECCHHHHHHHHHHHHH-HhhcC-------C------------C
Confidence 355555542 2455887642 1 4799999999999999987443 22110 0 0
Q ss_pred CCCCCceeEecccceeeecccccCCccccccChhhHhhhHhHHHhcCCCcc
Q 027682 151 RVQDAGVFVKRPIPLNYYQNAVTSSYTFAWWDWKRWEKEIDWMALQGINLP 201 (220)
Q Consensus 151 ~v~~~~v~~~s~~~~RYy~N~cTfsYS~awWdW~rWErEIDWMAL~GINlp 201 (220)
.+ .|+=.-.++||=.+=.|-= -+|+.=+.=.+.||-||++++|.-
T Consensus 75 ~~---~I~D~P~f~~RG~mlD~sR---~~f~~~~~ik~~id~ma~~KlN~l 119 (627)
T 2epl_X 75 EV---QIEEEAAYEDLAYMADCSR---NAVLNLSSAKKMIEVLALMGYSTF 119 (627)
T ss_dssp SE---EEEECCSCSEEEEEEECSS---SCCBCHHHHHHHHHHHHHHTCCEE
T ss_pred ce---EEEeCCCCCccceEEecCC---CCCCCHHHHHHHHHHHHHcCCcEE
Confidence 00 1222334456644333321 125666778999999999999964
No 28
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}
Probab=22.88 E-value=27 Score=34.15 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=24.7
Q ss_pred cCCccccc-----cChhhHh-hhHhHHHhcCCCccc
Q 027682 173 TSSYTFAW-----WDWKRWE-KEIDWMALQGINLPL 202 (220)
Q Consensus 173 TfsYS~aw-----WdW~rWE-rEIDWMAL~GINlpL 202 (220)
-=||+.|| +||.+|. +.++.|-..|.+|=.
T Consensus 190 VGGpasA~p~~e~~nF~~W~~~~k~Fmd~ag~~mDf 225 (591)
T 4aw7_A 190 VIGYAAAYPAWEDGNFNYWNTRMKMFIDRAGAYMDG 225 (591)
T ss_dssp EEEEEESCCCTTTTTTHHHHHTHHHHHHHHGGGCSE
T ss_pred EeccccccccccccchhhhhHHHHHHHHhcCCCcCE
Confidence 34788998 8999998 559999999988754
No 29
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.86 E-value=32 Score=22.17 Aligned_cols=13 Identities=69% Similarity=1.216 Sum_probs=10.6
Q ss_pred hHhhhHhHHHhcCCCccc
Q 027682 185 RWEKEIDWMALQGINLPL 202 (220)
Q Consensus 185 rWErEIDWMAL~GINlpL 202 (220)
||||||| .-|.||
T Consensus 11 ~~~~ei~-----~RNrpl 23 (39)
T 3lqv_P 11 RWEREID-----ERNRPL 23 (39)
T ss_dssp HHHHHHH-----HTTCCC
T ss_pred Hhhccch-----hhcCCC
Confidence 8999996 567777
No 30
>1env_A HIV-1 envelope protein chimera consisting of A FR GCN4 zipper cloned N-terminal TO...; viral fusion, coat protein, viral protein; 2.60A {Saccharomyces cerevisiae} SCOP: h.3.2.1 PDB: 1fav_A*
Probab=20.75 E-value=31 Score=27.32 Aligned_cols=12 Identities=33% Similarity=1.077 Sum_probs=8.8
Q ss_pred ChhhHhhhHhHH
Q 027682 182 DWKRWEKEIDWM 193 (220)
Q Consensus 182 dW~rWErEIDWM 193 (220)
.|..||||||=+
T Consensus 85 TW~qWdreI~ny 96 (123)
T 1env_A 85 TWMEWDREINNY 96 (123)
T ss_dssp -CHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 578999999743
No 31
>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C
Probab=20.34 E-value=1e+02 Score=22.60 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.7
Q ss_pred eEEEEecCHHHHHHHHHHHHHH
Q 027682 103 EIVISGVTGVEVLAGLHWYLRY 124 (220)
Q Consensus 103 kI~I~G~s~vala~Gln~YLK~ 124 (220)
.|.|.+...++|=.+||-||+-
T Consensus 56 ~i~i~A~D~~aLRA~lNs~lRl 77 (87)
T 3enc_A 56 ILDIKATDSSALRGTVNSYLRW 77 (87)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHHHHHHHHHHHHH
Confidence 4679999999999999999984
No 32
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Probab=20.24 E-value=46 Score=29.77 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.9
Q ss_pred cChhhHhhhHhHHHhcCCCccccc
Q 027682 181 WDWKRWEKEIDWMALQGINLPLAF 204 (220)
Q Consensus 181 WdW~rWErEIDWMAL~GINlpLA~ 204 (220)
|+-++|++.|+.|+-.|+|..=..
T Consensus 59 ~~~~~~~~dl~~~k~~G~N~vR~~ 82 (440)
T 1uuq_A 59 GDRDRLAKELDNLKAIGVNNLRVL 82 (440)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 678999999999999999986543
Done!