BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027683
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 35/187 (18%)
Query: 41 EGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDL------- 88
+ AL +++ L +P L SW PT + C TW + C+ D RV LDL
Sbjct: 7 DKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 89 --------------------GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL 128
G +NL G + P + KL L YL + N+ G IP L +
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL-KVVDVSSN 187
K+L++LD N +SG +PPS++ L +LV + + NR++G IP S L + +S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 188 DLCGTIP 194
L G IP
Sbjct: 185 RLTGKIP 191
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 47/181 (25%)
Query: 79 QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDLY 137
Q + LD + LSG L P + L +L + N I G IP G+ L S+ +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 138 NNNISGKIPPSLAKLK---------------------------------SLVF------- 157
N ++GKIPP+ A L SL F
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 158 ------LRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSF 211
L L +NR+ G +P+ L + L ++VS N+LCG IP G + ++ Y ++
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Query: 212 C 212
C
Sbjct: 303 C 303
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%)
Query: 95 GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKS 154
G P + +L++ N + G IP E+G++ L L+L +N+ISG IP + L+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 155 LVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYV 208
L L L+ N+L G+IP+ + ++ L +D+S+N+L G IP G FE P K++
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 86 LDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
LDL ++N SG ++P L + LQ L L N G IP L N L+SL L N +SG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 144 KIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 195
IP SL L L L+L N L G+IP+EL+ + +L+ + + NDL G IP+
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 64 PTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV 123
P L N C N N + L L N+ +G++ P L L L L N + GTIP
Sbjct: 380 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVD 183
LG+L L L L+ N + G+IP L +K+L L L+ N LTG+IP L ++L +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 184 VSSNDLCGTIP 194
+S+N L G IP
Sbjct: 494 LSNNRLTGEIP 504
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 67/103 (65%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
LSG + LG L L+ L+L+ N ++G IP EL +K+L +L L N+++G+IP L+
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 153 KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 195
+L ++ L++NRLTG+IP+ + + +L ++ +S+N G IP
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
T + + + LD+ + LSG + E+G + +L L L N+I G+IP E+G+L+ L LD
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPR 171
L +N + G+IP +++ L L + L++N L+G IP
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
L G + EL ++ L+ L L N++ G IP L N +L + L NN ++G+IP + +L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 153 KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
++L L+L++N +G IP EL SL +D+++N GTIP +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 92 NLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLK-SLISLDLYNNNISGKIPPSL 149
N SG L + L K+ L+ L+L N G +P L NL SL++LDL +NN SG I P+L
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 150 AK--LKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
+ +L L L +N TG+IP L S L + +S N L GTIP+S
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LD+ ++N S +P LG LQ+L++ N + G + L L++ +N G I
Sbjct: 202 LDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPRELVGI-SSLKVVDVSSNDLCGTIP 194
PP LKSL +L L +N+ TG+IP L G +L +D+S N G +P
Sbjct: 261 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 104 LEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
L+ LQYL L +N G IP L G +L LDL N+ G +PP L L L+
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 163 NRLTGQIPRE-LVGISSLKVVDVSSNDLCGTIPTS 196
N +G++P + L+ + LKV+D+S N+ G +P S
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+ L N+ L+G + +G+LE+L L+L N+ G IP ELG+ +SLI LDL N +G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 146 PPSLAK 151
P ++ K
Sbjct: 552 PAAMFK 557
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 81 NRVTRLDLGNSNLSGR------LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISL 134
N + LDL +++SG L G+L+HL + N I G V++ +L L
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGD--VDVSRCVNLEFL 202
Query: 135 DLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
D+ +NN S IP L +L L ++ N+L+G R + + LK++++SSN G IP
Sbjct: 203 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLS---GRLVPELGKLEHLQYL 110
PD N+L W NPCT+ +TC +D++VT +DL + L+ + L L L+ L
Sbjct: 22 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFLRLNDNRLTGQ 168
L ++I G++ SL SLDL N++SG + SL L FL ++ N L
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 169 IPRELVG---ISSLKVVDVSSNDLCGT 192
P ++ G ++SL+V+D+S+N + G
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGA 163
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 46/155 (29%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-------------------- 125
L L N++ SG + ELG L +L+L N GTIP +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 126 ------------GNLKSLISL--------------DLYNNNISGKIPPSLAKLKSLVFLR 159
GNL + ++ + G P+ S++FL
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
++ N L+G IP+E+ + L ++++ ND+ G+IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%)
Query: 95 GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKS 154
G P + +L++ N + G IP E+G++ L L+L +N+ISG IP + L+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 155 LVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYV 208
L L L+ N+L G+IP+ + ++ L +D+S+N+L G IP G FE P K++
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 86 LDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
LDL ++N SG ++P L + LQ L L N G IP L N L+SL L N +SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 144 KIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 195
IP SL L L L+L N L G+IP+EL+ + +L+ + + NDL G IP+
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 71/114 (62%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
+ L L + LSG + LG L L+ L+L+ N ++G IP EL +K+L +L L N++
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 142 SGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 195
+G+IP L+ +L ++ L++NRLTG+IP+ + + +L ++ +S+N G IP
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 64 PTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV 123
P L N C N N + L L N+ +G++ P L L L L N + GTIP
Sbjct: 383 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVD 183
LG+L L L L+ N + G+IP L +K+L L L+ N LTG+IP L ++L +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 184 VSSNDLCGTIP 194
+S+N L G IP
Sbjct: 497 LSNNRLTGEIP 507
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
T + + + LD+ + LSG + E+G + +L L L N+I G+IP E+G+L+ L LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPR 171
L +N + G+IP +++ L L + L++N L+G IP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
L G + EL ++ L+ L L N++ G IP L N +L + L NN ++G+IP + +L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 153 KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
++L L+L++N +G IP EL SL +D+++N GTIP +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 92 NLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNL-KSLISLDLYNNNISGKIPPSL 149
N SG L + L K+ L+ L+L N G +P L NL SL++LDL +NN SG I P+L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 150 AK--LKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
+ +L L L +N TG+IP L S L + +S N L GTIP+S
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LD+ ++N S +P LG LQ+L++ N + G + L L++ +N G I
Sbjct: 205 LDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPRELVGI-SSLKVVDVSSNDLCGTIP 194
PP LKSL +L L +N+ TG+IP L G +L +D+S N G +P
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 104 LEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
L+ LQYL L +N G IP L G +L LDL N+ G +PP L L L+
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 163 NRLTGQIPRE-LVGISSLKVVDVSSNDLCGTIPTS 196
N +G++P + L+ + LKV+D+S N+ G +P S
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+ L N+ L+G + +G+LE+L L+L N+ G IP ELG+ +SLI LDL N +G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 146 PPSLAK 151
P ++ K
Sbjct: 555 PAAMFK 560
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 81 NRVTRLDLGNSNLSGR------LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISL 134
N + LDL +++SG L G+L+HL + N I G V++ +L L
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGD--VDVSRCVNLEFL 205
Query: 135 DLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
D+ +NN S IP L +L L ++ N+L+G R + + LK++++SSN G IP
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLS---GRLVPELGKLEHLQYL 110
PD N+L W NPCT+ +TC +D++VT +DL + L+ + L L L+ L
Sbjct: 25 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFLRLNDNRLTGQ 168
L ++I G++ SL SLDL N++SG + SL L FL ++ N L
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 169 IPRELVG---ISSLKVVDVSSNDLCGT 192
P ++ G ++SL+V+D+S+N + G
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGA 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 46/155 (29%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-------------------- 125
L L N++ SG + ELG L +L+L N GTIP +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 126 ------------GNLKSLISL--------------DLYNNNISGKIPPSLAKLKSLVFLR 159
GNL + ++ + G P+ S++FL
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
++ N L+G IP+E+ + L ++++ ND+ G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 111 ELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQI 169
ELY + Q T +P EL N K L +DL NN IS S + + L+ L L+ NRL
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 170 PRELVGISSLKVVDVSSNDL 189
PR G+ SL+++ + ND+
Sbjct: 95 PRTFDGLKSLRLLSLHGNDI 114
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 98 VPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
VPE L L L L++N + P +L L++L L+ NN+S +LA L++L
Sbjct: 167 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 226
Query: 156 VFLRLNDN 163
+LRLNDN
Sbjct: 227 QYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L LQYL L N +Q +L +L L L+ N IS + L SL L L+ N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 164 RLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSG 197
R+ P + L + + +N+L +PT
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEA 219
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 98 VPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
VPE L L L L++N + P +L L++L L+ NN+S +LA L++L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 156 VFLRLNDN 163
+LRLNDN
Sbjct: 228 QYLRLNDN 235
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L LQYL L N +Q +L +L L L+ N IS + L SL L L+ N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 164 RLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSG 197
R+ P + L + + +N+L +PT
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEA 220
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
T LDL N+++S + L+HL L L N I L+ L L + N++
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 143 GKIPPSLAKLKSLVFLRLNDNRLTGQIPRELV-GISSLKVVDVSSNDLCGTIPTSGPFEH 201
+IPP+L SLV LR++DNR+ ++P+ + G+ ++ +++ N L + G F+
Sbjct: 116 -EIPPNLPS--SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 202 IPLN 205
+ LN
Sbjct: 172 LKLN 175
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 59 LQSWDPTLVNPCTWFHITCNQDNRVTRL------DLGNSN---LSGRLVPELGK-----L 104
LQ P L QDN + L DLGN L G +P + + L
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L L L++N++ P +L L++L L+ NN+S L L+SL +LRLNDN
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L LQYL L NN+Q +L +L L L+ N I + L SL L L+ N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 164 RLTGQIPRELVGISSLKVVDVSSNDL 189
+ P + L + + +N+L
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 90 NSNLSGRLVPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147
N N GR+ + G+L HL LEL +N + G P + L L N I
Sbjct: 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 148 SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSN 187
L L L L DN+++ +P ++SL ++++SN
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LDLG + + E HL+ LEL +N + P NL +L +L L +N +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDL 189
L +L L +++N++ + + +LK ++V NDL
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 30/63 (47%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
KL +L YL LY N +Q L +L LDL NN + KL L L LND
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 163 NRL 165
N+L
Sbjct: 191 NQL 193
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
Q L LY N I P L L LDL NN ++ KL L L LNDN+L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 168 QIPR 171
IPR
Sbjct: 93 -IPR 95
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NL+SL + L NN
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
Q L LY N I P L L LDL NN ++ KL L L LNDN+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 168 QIPR 171
IPR
Sbjct: 93 -IPR 95
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NLKSL + L NN
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
Q L LY N I P L L LDL NN ++ KL L L LNDN+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 168 QIPR 171
IPR
Sbjct: 100 SIPR 103
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NLKSL + L NN
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 213 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 266
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 267 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 305
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L NN +S SLA L ++ +
Sbjct: 301 ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDV--SSLANLTNINW 356
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 357 LSAGHNQISDLTP 369
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 267
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 306
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L YNN +S SLA L ++ +
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDV--SSLANLTNINW 357
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 358 LSAGHNQISDLTP 370
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
N +T+++ N+ L+ + L L L + + N I P L NL +L L L+NN
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 141 ISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
I+ P L L +L L L+ N ++ L G++SL+ + SSN + P
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP 168
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L NN +S SLA L ++ +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDV--SSLANLTNINW 353
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 354 LSAGHNQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+T L+L + L + + L++L YL LY NNI PV +L L L YNN +S
Sbjct: 285 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS 340
Query: 143 GKIPPSLAKLKSLVFLRLNDNRLTGQIP 170
SLA L ++ +L N+++ P
Sbjct: 341 DV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
N +T+++ N+ L+ + L L L + + N I P L NL +L L L+NN
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 141 ISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
I+ P L L +L L L+ N ++ L G++SL+ + SSN + P
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP 168
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 263 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L YNN +S SLA L ++ +
Sbjct: 297 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLANLTNINW 352
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 353 LSAGHNQISDLTP 365
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
N +T+++ N+ L+ + L L L + + N I P L NL +L L L+NN
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 141 ISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194
I+ P L L +L L L+ N ++ L G++SL+ ++ SSN + P
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP 168
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+T L+L + L + + L++L YL LY NNI PV +L L L YNN +S
Sbjct: 285 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS 340
Query: 143 GKIPPSLAKLKSLVFLRLNDNRLTGQIP 170
SLA L ++ +L N+++ P
Sbjct: 341 DV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196
L+L N+++ P L G+++L ++++ N L P S
Sbjct: 263 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L NN +S SLA L ++ +
Sbjct: 297 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDV--SSLANLTNINW 352
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 353 LSAGHNQISDLTP 365
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY----N 138
+T+LDL +NL L L+YL L NNIQ P L +L L L
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 139 NNISGKIPP-----SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVS 185
++S P S LK L +L ++DN + G+ SLK + +S
Sbjct: 310 QSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 90 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK--SLISLDLYNNNISGKIPP 147
N +L+ +L EL +Q L L N + T LK +L LDL NN+
Sbjct: 208 NPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 148 SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDV 184
S + L SL +L L N + PR G+S+L+ + +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L L+L N+I N K+LI LDL +N +S + +L++L L L N++
Sbjct: 99 LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKIL 158
Query: 167 GQIPREL--VGISSLKVVDVSSNDLCGTIPTSGPFEHI 202
EL +G SSL+ +D+SSN L P G F+ I
Sbjct: 159 ALRSEELEFLGNSSLRKLDLSSNPLKEFSP--GCFQTI 194
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNR 164
E + + L +N I+ P K L +DL NN IS P + L+SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 165 LTGQIPREL 173
+T ++P+ L
Sbjct: 92 IT-ELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNR 164
E + + L +N I+ P K L +DL NN IS P + L+SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 165 LTGQIPREL 173
+T ++P+ L
Sbjct: 92 IT-ELPKSL 99
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 82 RVTRLDLGNSNLSGRLVPELG---KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
++ LD +SNL + + E L +L YL++ + + L SL L +
Sbjct: 397 QLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 139 NNISGKIPPSL-AKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDL 189
N+ P + +L++L FL L+ +L P +SSL+V++++SN L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 72 WFHITCNQD-NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL--GNL 128
+ H+ C + T L+ + + + L+ LQ L L +N ++ V L N+
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402
Query: 129 KSLISLDLYNNNI-SGKIPPSLAKLKSLVFLRLNDNRLTGQ------------------- 168
SL +LD+ N++ S + A +S++ L L+ N LTG
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462
Query: 169 --IPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYV 208
IP+++ + +L+ ++V+SN L ++P G F+ + +Y+
Sbjct: 463 MSIPKDVTHLQALQELNVASNQL-KSVP-DGVFDRLTSLQYI 502
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 76 TCNQDNRVTRLDLGNSNLSG---RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI 132
TC + L+L ++ L+G R +P K+ L+L+ N I +IP ++ +L++L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKV-----LDLHNNRIM-SIPKDVTHLQALQ 476
Query: 133 SLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L++ +N + +L SL ++ L+DN
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%)
Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L L YL L N +Q L SL L LYNN + + KL L L+L++N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 164 RLTGQIPRELVGISSLKVVDVSSN 187
+L + LK++ + N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNI 141
+LDL ++ LS +L L+ L L N +Q T+P + LK+L +L + +N +
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 142 SGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDL 189
+L +L LRL+ N+L PR ++ L + + N+L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
++T L LG + L KL L+ L LY N ++ L L +L L NN +
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 142 SGKIPPSLAKLKSLVFLRLNDN 163
+ L+ L L+L +N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L+YL+L N++ +L++L L LYNN+I + + L L L+ N+++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 167 GQIPRELV----GISSLKVVDVSSNDL 189
+ P EL+ + L ++D+SSN L
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
++ LDL ++LS L HLQ L + ++ IQ NL+SL+ ++L +NN+
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 142 S 142
+
Sbjct: 268 T 268
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
V L HL+ L+L +N+I+ L +L +L+L++N ++ + L L
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 158 LRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVS-SFCNL 214
L L +N + I SL+ +D+ I + G FE + +Y++ + CNL
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNL 197
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 85 RLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNIS 142
LD N+ L+ + G L L+ L L N ++ I +KSL LD+ N++S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 143 -GKIPPSLAKLKSLVFLRLNDNRLT---------------------GQIPRELVGISSLK 180
+ + KSL+ L ++ N LT IP+++V + +L+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQ 447
Query: 181 VVDVSSNDLCGTIPTSGPFEHI 202
++V+SN L ++P G F+ +
Sbjct: 448 ELNVASNQL-KSVP-DGIFDRL 467
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 187 NDLCGTIPTSGPFEHIPLNKYVSSFCNLLLASLL 220
N LC IP++G FE IPL + SS NL + SLL
Sbjct: 165 NGLCRYIPSNGKFEGIPLPVH-SSQSNLFVNSLL 197
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 187 NDLCGTIPTSGPFEHIPLNKYVSSFCNLLLASLL 220
N LC IP++G FE IPL + SS NL + SLL
Sbjct: 165 NGLCRYIPSNGKFEGIPLPVH-SSQSNLFVNSLL 197
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180
+P E+ NL +L LDL +N ++ +P L L + DN +T +P E + +L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 181 VVDVSSNDL 189
+ V N L
Sbjct: 320 FLGVEGNPL 328
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 133 SLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLC 190
+LDL N I I ++ K L L LN N LT ++P E+ +S+L+V+D+S N L
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 30/164 (18%)
Query: 67 VNPCTWFHITCNQDNRVTRL-DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL 125
+ P F C+ RV + DLG + L P+ L+L N I +
Sbjct: 21 MGPVCPFRCQCHL--RVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDF 72
Query: 126 GNLKSLISLDLYNNNISGKIPPSLAKL---------------------KSLVFLRLNDNR 164
NLK+L +L L NN IS P + A L K+L LR+++N
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132
Query: 165 LTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYV 208
+T G++ + VV++ +N L + +G F+ + Y+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L L L N I L L +L L L N+IS SLA L L LN+N+L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 167 GQIPRELVGISSLKVV--------DVSSNDLC 190
++P L ++VV + SND C
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 30/164 (18%)
Query: 67 VNPCTWFHITCNQDNRVTRL-DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL 125
+ P F C+ RV + DLG + L P+ L+L N I +
Sbjct: 21 MGPVCPFRCQCHL--RVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDF 72
Query: 126 GNLKSLISLDLYNNNISGKIPPSLAKL---------------------KSLVFLRLNDNR 164
NLK+L +L L NN IS P + A L K+L LR+++N
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132
Query: 165 LTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYV 208
+T G++ + VV++ +N L + +G F+ + Y+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L L L N I L L +L L L N+IS SLA L L LN+N+L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 167 GQIPRELVGISSLKVV--------DVSSNDLC 190
++P L ++VV + SND C
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
K+E+ L+ + T+ L L + LDL +N + +PP+LA L+ L L+ +D
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 163 NRL 165
N L
Sbjct: 496 NAL 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
K+E+ L+ + T+ L L + LDL +N + +PP+LA L+ L L+ +D
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 163 NRL 165
N L
Sbjct: 496 NAL 498
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 30/136 (22%)
Query: 81 NRVTRLDLG------NSNLSGRLVPELGKLEHLQYLELYKNNI---QGTIPVELGNLK-- 129
NR+T +DL ++N+S L+ L ++ L+ N+I +G + VEL LK
Sbjct: 175 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234
Query: 130 --------------SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVG 175
L+ +DL N + + K++ L L +++NRL + L G
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYG 291
Query: 176 --ISSLKVVDVSSNDL 189
I +LKV+D+S N L
Sbjct: 292 QPIPTLKVLDLSHNHL 307
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNN 139
++T L+L + L+ V KL L +L L+ N ++ +IP+ + NLKSL + L+NN
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 105 EHLQYLELYKNNIQGTIPVE--LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
E +Q + + NN++ T PVE L K L L+ N + GK+P +++K L L L
Sbjct: 305 EKIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAY 362
Query: 163 NRLTGQIPRELVGISS 178
N++T +IP G +
Sbjct: 363 NQIT-EIPANFCGFTE 377
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG NL +P L L L+ LEL N + P L SL L L + ++
Sbjct: 161 LNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPREL 173
+ LKSL L L+ N L +P +L
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMS-LPHDL 245
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG NL +P L L L+ LEL N + P L SL L L + ++
Sbjct: 161 LNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPREL 173
+ LKSL L L+ N L +P +L
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMS-LPHDL 245
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L L+L NN+ T L N L+ +DL N + + K++ L L +++NRL
Sbjct: 234 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 290
Query: 167 GQIPRELVG--ISSLKVVDVSSNDLCGTIPTSGPFEHI 202
+ L G I +LKV+D+S N L F+ +
Sbjct: 291 --VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159
KL L L+L N+++ NLKSL + LYNN P + + +++LR
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN-------PWDCECRDIMYLR 128
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG N+ +P L L L+ LE+ N+ P L SL L + N+ +S
Sbjct: 201 LNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPREL 173
+ L SLV L L N L+ +P +L
Sbjct: 259 RNAFDGLASLVELNLAHNNLSS-LPHDL 285
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
C+ N+ +++ LS VP+ G + +YL L +NNIQ +L L L
Sbjct: 49 VCSCSNQFSKVVCTRRGLSE--VPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQ 105
Query: 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L N+I + L SL L L DN LT
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
KL +L YL L N +Q L +L LDL N + KL L LRL
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 163 NRL 165
N+L
Sbjct: 191 NQL 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,671,598
Number of Sequences: 62578
Number of extensions: 216553
Number of successful extensions: 757
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 165
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)