Query 027683
Match_columns 220
No_of_seqs 368 out of 3770
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.7E-23 6E-28 195.9 17.0 174 38-212 27-224 (968)
2 PLN03150 hypothetical protein; 99.8 2.7E-18 6E-23 154.6 14.6 158 36-195 368-533 (623)
3 PLN00113 leucine-rich repeat r 99.7 1.3E-16 2.8E-21 150.8 9.0 131 81-211 475-605 (968)
4 KOG0617 Ras suppressor protein 99.6 5.4E-17 1.2E-21 120.8 -4.0 127 80-210 32-160 (264)
5 KOG0617 Ras suppressor protein 99.5 3.2E-16 7E-21 116.7 -4.3 133 81-217 56-190 (264)
6 KOG4194 Membrane glycoprotein 99.4 4.5E-15 9.7E-20 128.2 -2.4 136 81-216 269-408 (873)
7 PLN03150 hypothetical protein; 99.4 2.8E-13 6.1E-18 122.3 7.7 106 106-211 419-526 (623)
8 KOG0472 Leucine-rich repeat pr 99.3 4E-14 8.7E-19 117.6 -3.8 131 82-218 184-315 (565)
9 KOG0472 Leucine-rich repeat pr 99.3 1.2E-13 2.5E-18 114.9 -3.5 130 82-214 389-542 (565)
10 KOG4194 Membrane glycoprotein 99.3 1.1E-12 2.4E-17 113.6 1.7 133 83-215 199-332 (873)
11 KOG0618 Serine/threonine phosp 99.2 4.3E-13 9.4E-18 121.0 -3.1 129 81-212 359-488 (1081)
12 KOG0444 Cytoskeletal regulator 99.2 8.8E-13 1.9E-17 115.3 -2.5 129 82-214 56-187 (1255)
13 KOG0444 Cytoskeletal regulator 99.2 2.1E-12 4.5E-17 113.0 -1.6 133 82-217 127-285 (1255)
14 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-11 5.7E-16 92.2 4.3 119 82-206 20-146 (175)
15 PF14580 LRR_9: Leucine-rich r 99.2 2.4E-11 5.3E-16 92.4 3.6 107 101-213 15-126 (175)
16 KOG4237 Extracellular matrix p 99.1 5.9E-12 1.3E-16 104.6 -1.7 130 81-211 67-199 (498)
17 PRK15370 E3 ubiquitin-protein 99.1 3.2E-09 7E-14 97.4 14.0 118 82-213 179-296 (754)
18 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 99.6 -1.5 128 82-215 285-414 (490)
19 PF13855 LRR_8: Leucine rich r 99.0 1.2E-10 2.6E-15 73.3 2.2 59 106-164 2-60 (61)
20 PF13855 LRR_8: Leucine rich r 99.0 1.5E-10 3.3E-15 72.8 2.5 60 130-189 2-61 (61)
21 PLN03210 Resistant to P. syrin 99.0 2.2E-09 4.8E-14 103.4 11.0 128 82-214 612-739 (1153)
22 PRK15370 E3 ubiquitin-protein 99.0 1.7E-09 3.6E-14 99.3 8.8 98 81-190 199-296 (754)
23 cd00116 LRR_RI Leucine-rich re 98.9 1.4E-10 3E-15 96.3 -0.2 86 81-166 81-178 (319)
24 PLN03210 Resistant to P. syrin 98.9 8.4E-09 1.8E-13 99.5 11.4 126 82-211 590-715 (1153)
25 KOG0532 Leucine-rich repeat (L 98.9 1E-10 2.2E-15 101.3 -2.3 130 81-217 121-251 (722)
26 PRK15387 E3 ubiquitin-protein 98.9 3.8E-09 8.2E-14 96.9 6.9 123 81-213 302-458 (788)
27 cd00116 LRR_RI Leucine-rich re 98.9 3.1E-10 6.7E-15 94.2 -0.6 132 82-213 138-291 (319)
28 KOG0618 Serine/threonine phosp 98.8 4.6E-10 9.9E-15 101.9 -0.7 106 80-189 382-488 (1081)
29 PRK15387 E3 ubiquitin-protein 98.8 1.8E-08 4E-13 92.4 8.6 98 81-195 222-319 (788)
30 KOG4237 Extracellular matrix p 98.7 8.7E-10 1.9E-14 91.9 -1.9 129 86-217 51-181 (498)
31 PF08263 LRRNT_2: Leucine rich 98.7 3.6E-08 7.8E-13 57.4 4.4 40 39-78 2-43 (43)
32 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.4E-13 87.7 3.0 104 81-188 116-220 (394)
33 KOG1259 Nischarin, modulator o 98.7 3.6E-09 7.7E-14 85.7 -0.6 110 101-215 280-389 (490)
34 COG4886 Leucine-rich repeat (L 98.6 9.7E-09 2.1E-13 88.1 1.5 127 82-213 141-290 (394)
35 KOG0532 Leucine-rich repeat (L 98.6 5.1E-09 1.1E-13 90.9 -0.6 107 82-194 144-250 (722)
36 KOG3207 Beta-tubulin folding c 98.5 1.7E-08 3.7E-13 85.1 0.7 142 70-213 186-339 (505)
37 KOG1859 Leucine-rich repeat pr 98.5 8.4E-10 1.8E-14 98.1 -8.8 126 82-213 165-292 (1096)
38 KOG4579 Leucine-rich repeat (L 98.4 3.2E-09 6.9E-14 76.7 -6.2 111 81-194 53-163 (177)
39 KOG4658 Apoptotic ATPase [Sign 98.4 1.3E-07 2.9E-12 88.3 2.4 106 82-188 546-653 (889)
40 KOG0531 Protein phosphatase 1, 98.3 1.2E-07 2.5E-12 82.2 -0.1 106 101-212 91-198 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.3 5E-07 1.1E-11 84.5 3.8 126 82-210 524-652 (889)
42 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.4E-11 51.3 3.2 16 149-164 20-35 (44)
43 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 51.4 2.7 40 153-194 1-40 (44)
44 KOG0531 Protein phosphatase 1, 98.2 2.7E-07 5.8E-12 79.9 0.1 105 80-190 94-199 (414)
45 KOG1644 U2-associated snRNP A' 98.2 2.9E-06 6.2E-11 65.2 5.5 101 82-185 43-148 (233)
46 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.7E-12 68.5 -2.7 112 80-196 26-141 (177)
47 KOG3207 Beta-tubulin folding c 98.1 5.8E-07 1.3E-11 76.1 0.1 131 81-212 146-313 (505)
48 KOG1644 U2-associated snRNP A' 98.0 7.6E-06 1.6E-10 63.0 5.0 121 84-209 22-149 (233)
49 KOG1859 Leucine-rich repeat pr 97.9 4.8E-07 1E-11 81.1 -5.1 103 105-212 164-266 (1096)
50 KOG2739 Leucine-rich acidic nu 97.6 4.3E-05 9.3E-10 60.9 3.0 81 82-166 44-129 (260)
51 KOG2123 Uncharacterized conser 97.5 1.8E-06 3.8E-11 69.6 -5.9 102 77-183 15-123 (388)
52 KOG2982 Uncharacterized conser 97.5 2.1E-05 4.6E-10 64.0 -0.0 83 81-163 71-156 (418)
53 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.6E-10 71.0 0.6 131 81-213 122-263 (699)
54 PRK15386 type III secretion pr 97.5 0.00056 1.2E-08 58.8 8.0 13 178-190 157-169 (426)
55 KOG1909 Ran GTPase-activating 97.3 2.9E-05 6.3E-10 64.3 -1.6 132 80-212 156-310 (382)
56 KOG1909 Ran GTPase-activating 97.3 0.0001 2.2E-09 61.1 1.5 62 81-142 92-170 (382)
57 KOG2739 Leucine-rich acidic nu 97.3 0.00024 5.1E-09 56.7 3.1 92 96-191 34-130 (260)
58 KOG3665 ZYG-1-like serine/thre 97.1 0.00016 3.5E-09 66.4 1.0 111 80-192 147-265 (699)
59 KOG2982 Uncharacterized conser 97.0 0.00014 3E-09 59.4 -0.3 108 83-190 47-159 (418)
60 PRK15386 type III secretion pr 96.6 0.012 2.6E-07 50.8 7.9 96 81-188 72-188 (426)
61 COG5238 RNA1 Ran GTPase-activa 96.3 0.004 8.8E-08 50.5 3.5 113 101-214 88-228 (388)
62 PF13306 LRR_5: Leucine rich r 96.2 0.014 3E-07 41.5 5.6 101 81-186 12-112 (129)
63 COG5238 RNA1 Ran GTPase-activa 96.2 0.011 2.4E-07 48.0 5.2 109 81-190 92-227 (388)
64 KOG2120 SCF ubiquitin ligase, 96.1 0.00025 5.5E-09 58.0 -4.2 39 151-189 311-350 (419)
65 PF13306 LRR_5: Leucine rich r 96.1 0.014 3.1E-07 41.5 5.4 105 99-209 6-112 (129)
66 KOG2123 Uncharacterized conser 96.1 0.00018 3.9E-09 58.2 -5.3 99 104-206 18-123 (388)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0023 5E-08 31.2 0.2 11 108-118 3-13 (22)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0037 7.9E-08 30.5 0.8 21 130-151 1-21 (22)
69 KOG0473 Leucine-rich repeat pr 95.3 0.00019 4.1E-09 56.7 -7.7 84 80-166 41-124 (326)
70 KOG0473 Leucine-rich repeat pr 95.2 0.0003 6.4E-09 55.6 -6.8 89 99-190 36-124 (326)
71 PF13504 LRR_7: Leucine rich r 94.5 0.021 4.5E-07 25.9 1.1 13 178-190 2-14 (17)
72 KOG2120 SCF ubiquitin ligase, 94.4 0.00019 4.1E-09 58.7 -10.0 85 82-166 186-273 (419)
73 smart00369 LRR_TYP Leucine-ric 91.0 0.22 4.7E-06 24.9 2.0 13 130-142 3-15 (26)
74 smart00370 LRR Leucine-rich re 91.0 0.22 4.7E-06 24.9 2.0 13 130-142 3-15 (26)
75 smart00364 LRR_BAC Leucine-ric 84.4 0.73 1.6E-05 23.3 1.4 17 130-147 3-19 (26)
76 KOG3864 Uncharacterized conser 83.9 0.15 3.2E-06 39.7 -1.9 81 82-162 102-185 (221)
77 KOG1947 Leucine rich repeat pr 83.2 0.31 6.8E-06 42.4 -0.4 89 101-189 210-307 (482)
78 smart00365 LRR_SD22 Leucine-ri 82.5 1.3 2.8E-05 22.4 1.8 13 130-142 3-15 (26)
79 PF13516 LRR_6: Leucine Rich r 78.1 1.5 3.3E-05 21.3 1.3 12 106-117 3-14 (24)
80 KOG3864 Uncharacterized conser 77.0 0.19 4E-06 39.2 -3.4 81 106-186 102-185 (221)
81 smart00368 LRR_RI Leucine rich 76.9 2.3 4.9E-05 21.7 1.8 13 130-142 3-15 (28)
82 KOG3763 mRNA export factor TAP 58.1 5.3 0.00011 35.9 1.2 62 104-167 217-284 (585)
83 KOG3763 mRNA export factor TAP 57.5 5.5 0.00012 35.7 1.2 79 126-206 215-307 (585)
84 KOG1947 Leucine rich repeat pr 56.9 5.4 0.00012 34.7 1.1 87 80-166 213-308 (482)
85 TIGR00864 PCC polycystin catio 47.4 15 0.00032 39.4 2.5 32 135-166 1-32 (2740)
86 KOG4308 LRR-containing protein 46.1 0.67 1.5E-05 41.1 -6.2 108 83-190 146-275 (478)
87 smart00367 LRR_CC Leucine-rich 41.1 21 0.00046 17.5 1.4 11 129-139 2-12 (26)
88 TIGR00864 PCC polycystin catio 39.7 22 0.00048 38.2 2.4 32 111-142 1-32 (2740)
89 KOG4341 F-box protein containi 27.2 37 0.00081 29.7 1.5 108 81-188 320-437 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.7e-23 Score=195.89 Aligned_cols=174 Identities=32% Similarity=0.571 Sum_probs=125.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcC
Q 027683 38 GNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI 117 (220)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 117 (220)
.++|+.+|++||+.+.+|.....+|+.. .++|.|.||+|+..++|+.|++++|++.+.++..+..+++|++|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 5588999999999998887788999754 579999999998778999999999999988888888999999999999998
Q ss_pred CCCCccccC-CCCCCcEEeCcCCcCCCC----------------------CcccccCCCCCCEEEccCCcCCCCCccccc
Q 027683 118 QGTIPVELG-NLKSLISLDLYNNNISGK----------------------IPPSLAKLKSLVFLRLNDNRLTGQIPRELV 174 (220)
Q Consensus 118 ~~~~p~~l~-~l~~L~~L~Ls~n~l~~~----------------------~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 174 (220)
++.+|..+. .+++|++|++++|.+++. +|..++.+++|++|++++|.+.+.+|..+.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 877776544 666777777666666544 444455555555555555555555555555
Q ss_pred CCCCCcEEEeecCcCCCcCCCC-CCCCCCCccccccccc
Q 027683 175 GISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFC 212 (220)
Q Consensus 175 ~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~ 212 (220)
++++|++|++++|.+.+.+|.. +.+++|+.+++.+|..
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 5555555555555555555543 4555555555555543
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.78 E-value=2.7e-18 Score=154.65 Aligned_cols=158 Identities=35% Similarity=0.488 Sum_probs=134.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCCCcceeeCCC-----CCEEEEEcCCCCCCccCCcccCCCCCCc
Q 027683 36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVN--PCTWFHITCNQD-----NRVTRLDLGNSNLSGRLVPELGKLEHLQ 108 (220)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~--~c~~~gv~c~~~-----~~l~~L~L~~n~l~~~~~~~l~~l~~L~ 108 (220)
....+|..+|..+|..+.++.. .+|....+. .|.|.||.|... ..++.|+|++|.+.|.+|..+..+++|+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~ 445 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQ 445 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCC
Confidence 3455789999999999876532 479643211 127999999521 2489999999999999999999999999
Q ss_pred EEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCC-CCCcEEEeecC
Q 027683 109 YLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI-SSLKVVDVSSN 187 (220)
Q Consensus 109 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~N 187 (220)
.|++++|.+.|.+|..+..+++|+.|++++|+++|.+|+.++++++|++|++++|+++|.+|..+... .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988754 46788999999
Q ss_pred cCCCcCCC
Q 027683 188 DLCGTIPT 195 (220)
Q Consensus 188 ~l~g~~p~ 195 (220)
...+..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 76655554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.67 E-value=1.3e-16 Score=150.79 Aligned_cols=131 Identities=38% Similarity=0.649 Sum_probs=111.7
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++++|++++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888899
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSF 211 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~ 211 (220)
++|++.+.+|..+..+++|+++++++|++.|.+|..+.+..+....+.+|+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 888888888888888888888899888888888887777777777777775
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.4e-17 Score=120.83 Aligned_cols=127 Identities=23% Similarity=0.450 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.+++++|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 356777788888877 56667777788888888888877 56777777777888887777777 6777777777777777
Q ss_pred ccCCcCCC-CCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCccccccc
Q 027683 160 LNDNRLTG-QIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSS 210 (220)
Q Consensus 160 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n 210 (220)
+.+|++.. .+|+.|..+..|+.|++++|.+. .+|. .+.+.++++|.+..|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 77777653 34544444444444444444444 2332 244444444444333
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.2e-16 Score=116.73 Aligned_cols=133 Identities=23% Similarity=0.415 Sum_probs=120.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCC-CCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS-GKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ 159 (220)
.+++.|++.+|+++ .+|..+..+++|+.|+++-|++. ..|..|+.++.|+.||+.+|++. ..+|..|..++.|+.|+
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 46888999999999 78889999999999999999998 78999999999999999999986 35788888999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhhh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~~ 217 (220)
+++|.+. .+|..++++++|+.|.+..|.+- ++|.. +.+..++.|.+.||....++.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 9999998 88989999999999999999988 77765 888999999999998887764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=4.5e-15 Score=128.18 Aligned_cols=136 Identities=24% Similarity=0.216 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|+|+.|++...-...+.+++.|+.|++++|.|....++.+...++|++|+|++|+++..-+..|..+..|++|+|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 46777888888887655666777888888888888888777777888888888888888888655667777777777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC----CCCCCCCcccccccccchhh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS----GPFEHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~----~~l~~l~~l~l~~n~~~~l~ 216 (220)
++|+++..-...|..+++|++|||++|.+++.|-+. ..++.|+.|++.||..+.++
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 777777655566667777777777777777555432 33666777777777766554
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=2.8e-13 Score=122.35 Aligned_cols=106 Identities=32% Similarity=0.592 Sum_probs=96.0
Q ss_pred CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEee
Q 027683 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVS 185 (220)
Q Consensus 106 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 185 (220)
.++.|+|++|.+.|.+|..+..+++|+.|++++|.++|.+|..++.+++|+.|++++|+++|.+|+.+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCcCCCC--CCCCCCCcccccccc
Q 027683 186 SNDLCGTIPTS--GPFEHIPLNKYVSSF 211 (220)
Q Consensus 186 ~N~l~g~~p~~--~~l~~l~~l~l~~n~ 211 (220)
+|+++|.+|.. ..+.++..+.+.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99999999975 223445567777764
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=4e-14 Score=117.64 Aligned_cols=131 Identities=31% Similarity=0.463 Sum_probs=108.1
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCccccc-CCCCCCEEEc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLA-KLKSLVFLRL 160 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L 160 (220)
+++.+|...|-++ .+|++++.+.+|+.|++..|++. ..| .|+++..|+++.++.|.+. .+|.+.. +++++.+||+
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 4566666666665 77888888888888888888887 566 7888888888888888888 6777655 8999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchhhhc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLLLAS 218 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l~~~ 218 (220)
.+|+++ ++|+.+.-+++|..||+++|.+++-.+..+++ .++.+.+.|||.+-+-..
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHH
Confidence 999999 89999999999999999999999444444888 889999999998765443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=1.2e-13 Score=114.92 Aligned_cols=130 Identities=26% Similarity=0.405 Sum_probs=99.6
Q ss_pred CEEEEEcCCCCCC-----------------------ccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcC
Q 027683 82 RVTRLDLGNSNLS-----------------------GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138 (220)
Q Consensus 82 ~l~~L~L~~n~l~-----------------------~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 138 (220)
-|+.+++++|++. +.+|..+..+++|..|++++|-+. .+|..++.+..|+.++++.
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 3788888888766 123344566777777777777776 5677777777777777777
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccch
Q 027683 139 NNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 139 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~ 214 (220)
|+|. .+|..+..+..++.+-.++|++....|+.+.++++|..||+.+|.+. .+|+. +++.+++.|.+.|||+.+
T Consensus 468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 7777 66776666666776666677777666667889999999999999998 77776 999999999999999874
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=1.1e-12 Score=113.57 Aligned_cols=133 Identities=24% Similarity=0.238 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccC
Q 027683 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (220)
Q Consensus 83 l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (220)
+..|.|+.|+++...+..|.++++|+.|+|..|+|.-.---.|.++++|+.|.+.+|.++..-...|..+.++++|+|+.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 34444444444433333344444444444444444311112233333333333333333322223355556666666666
Q ss_pred CcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchh
Q 027683 163 NRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l 215 (220)
|+++..-.+.+.+++.|++|++++|.+...-++. ...++|+.|+++.|.++-+
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 6666555555666666777777776666333443 3446666666666666544
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=4.3e-13 Score=120.98 Aligned_cols=129 Identities=29% Similarity=0.434 Sum_probs=111.8
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
..++.|.+.+|.+++..-+.+.++.+|+.|+|++|++.......+.++..|+.|+||+|+++ .+|+.+..++.|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 35788899999999988888999999999999999998555566889999999999999999 88999999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCc-CCCCCCCCCCCccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGT-IPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-~p~~~~l~~l~~l~l~~n~~ 212 (220)
.+|++. ..| .+..++.|+.+|++.|+++.. +|.....++|+.|+++||..
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999998 677 788999999999999999833 44444448999999999984
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.20 E-value=8.8e-13 Score=115.27 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=95.9
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCC-CCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
+++.|.+++|++. .+..++..++.|+.+++..|++.. -+|..+-.+..|..||||+|+++ +.|..+..-+++.+|+|
T Consensus 56 kLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence 4666777777776 455566777777777777777742 36777778888888888888888 77888888888888888
Q ss_pred cCCcCCCCCc-ccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccch
Q 027683 161 NDNRLTGQIP-RELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 161 ~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~~ 214 (220)
++|++. .+| ..+.++..|-.||+++|++. .+|+ ...+..|++|++++||.+.
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH
Confidence 888887 445 34567788888888888887 4554 4778888888888888764
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=2.1e-12 Score=112.98 Aligned_cols=133 Identities=24% Similarity=0.379 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCC------------------
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG------------------ 143 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------------ 143 (220)
+...|+|++|+|...+.+-|.++..|-.|||++|++. .+|+.+..+.+|+.|+|++|.+.-
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 3445555555555333333455555556666666665 455555666666666666654321
Q ss_pred -------CCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchh
Q 027683 144 -------KIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 144 -------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l 215 (220)
.+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|++++|+++ .+... +.+.++.+|.++.|-...+
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc
Confidence 23444445555566666666665 56666666666666666666666 33322 5556666666666655554
Q ss_pred hh
Q 027683 216 LA 217 (220)
Q Consensus 216 ~~ 217 (220)
+.
T Consensus 284 P~ 285 (1255)
T KOG0444|consen 284 PD 285 (1255)
T ss_pred hH
Confidence 43
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.6e-11 Score=92.23 Aligned_cols=119 Identities=28% Similarity=0.441 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCCccCCcccC-CCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccc-cCCCCCCEEE
Q 027683 82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVFLR 159 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 159 (220)
++++|+|.+|.|+. + +.++ .+.+|+.|++++|.++. ++ .+..++.|+.|++++|+++ .+.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 57899999999983 3 3455 57899999999999984 44 5788999999999999998 454444 4689999999
Q ss_pred ccCCcCCCC-CcccccCCCCCcEEEeecCcCCCcCCCC-----CCCCCCCccc
Q 027683 160 LNDNRLTGQ-IPRELVGISSLKVVDVSSNDLCGTIPTS-----GPFEHIPLNK 206 (220)
Q Consensus 160 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p~~-----~~l~~l~~l~ 206 (220)
+++|++... .-..+..+++|++|++.+|+++.. +.. ..+|+|+.|+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 999999742 124567889999999999999833 332 3455566555
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.4e-11 Score=92.39 Aligned_cols=107 Identities=27% Similarity=0.369 Sum_probs=40.6
Q ss_pred cCCCCCCcEEEccCCcCCCCCccccC-CCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccc-cCCCC
Q 027683 101 LGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPREL-VGISS 178 (220)
Q Consensus 101 l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~ 178 (220)
+.+..++++|+|++|.|+. +. .++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|+++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 4555678999999999983 43 455 5889999999999998 443 57889999999999999994 44444 46899
Q ss_pred CcEEEeecCcCCCcCCCC---CCCCCCCcccccccccc
Q 027683 179 LKVVDVSSNDLCGTIPTS---GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 179 L~~L~l~~N~l~g~~p~~---~~l~~l~~l~l~~n~~~ 213 (220)
|++|++++|++. .+-.. ..+++|+.|++.+||+.
T Consensus 90 L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence 999999999998 33332 67899999999999975
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=5.9e-12 Score=104.56 Aligned_cols=130 Identities=25% Similarity=0.279 Sum_probs=112.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcC-CcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 159 (220)
...++|+|..|+|+...+..|..+++|++|||++|.|+.+.|+.|.++.+|..|-+.+ |+|+......|+++..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3678999999999977788899999999999999999988999999999988876666 999955556799999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC--CCCCCCCcccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS--GPFEHIPLNKYVSSF 211 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~--~~l~~l~~l~l~~n~ 211 (220)
+.-|++.-...+.|..++++..|.+.+|.+. .++.. ..+..++.+.+.-|+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 9999998777888999999999999999987 66652 556777777777776
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=3.2e-09 Score=97.43 Aligned_cols=118 Identities=23% Similarity=0.353 Sum_probs=62.2
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
+.+.|++++++++ .+|..+. +.|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4567777777777 4454443 45777777777776 4454432 46666777766666 4454332 245555555
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+|++. .+|..+. ++|+.|++++|+++ .+|.. ..++|+.|++++|..+
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~-l~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN-LPEELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccc-cCCCCcEEECCCCccc
Confidence 55555 3443332 24555555555554 33331 1234444444444333
No 18
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.3e-11 Score=99.62 Aligned_cols=128 Identities=23% Similarity=0.255 Sum_probs=100.1
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
.++++||++|.++ .+..+..-++.++.|++++|.+. .+. .+..+++|+.||+++|.++ .+...-..+.+.++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4678899999888 66677777889999999999987 333 3788899999999999988 555555567788889999
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCC--cCCCCCCCCCCCcccccccccchh
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCG--TIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g--~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
+|.+.. -..+..+=+|..||+++|++.. .+-..|.+|.+..+.+.+||...+
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 998862 2346667788999999998872 233448899999999999997654
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=1.2e-10 Score=73.29 Aligned_cols=59 Identities=34% Similarity=0.546 Sum_probs=28.9
Q ss_pred CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCc
Q 027683 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNR 164 (220)
Q Consensus 106 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (220)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333444555555555555555543333444455555555554443
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1.5e-10 Score=72.85 Aligned_cols=60 Identities=37% Similarity=0.538 Sum_probs=34.2
Q ss_pred CCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcC
Q 027683 130 SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDL 189 (220)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l 189 (220)
+|++|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666533334555566666666666666544445555666666666665543
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.01 E-value=2.2e-09 Score=103.44 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
++++|++.++.+. .++..+..+++|++|+++++...+.+| .+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4555666666555 344455556666666666554333444 35556666666666655444566666666666666666
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccch
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~ 214 (220)
+|...+.+|..+ ++++|+.|++++|...+.+|.. ..+++.|++.+|....
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE 739 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc
Confidence 654333455433 4556666666555444444432 3344555555554433
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.98 E-value=1.7e-09 Score=99.26 Aligned_cols=98 Identities=27% Similarity=0.435 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 46788888888888 4555443 47888888888877 4555443 35777777777776 5555443 35667777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCC
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
++|+++ .+|..+. ++|+.|++++|+++
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc
Confidence 766666 4554432 35666666666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=1.4e-10 Score=96.32 Aligned_cols=86 Identities=27% Similarity=0.306 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCC---CcEEEccCCcCCC----CCccccCCC-CCCcEEeCcCCcCCCC----Cccc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEH---LQYLELYKNNIQG----TIPVELGNL-KSLISLDLYNNNISGK----IPPS 148 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~ 148 (220)
.++++|++++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 34555555555554333333333322 5555555555442 111223333 4455555555554421 1122
Q ss_pred ccCCCCCCEEEccCCcCC
Q 027683 149 LAKLKSLVFLRLNDNRLT 166 (220)
Q Consensus 149 ~~~l~~L~~L~L~~n~l~ 166 (220)
+..+++|++|++++|.++
T Consensus 161 ~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 161 LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHhCCCcCEEECcCCCCc
Confidence 333444555555554444
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.92 E-value=8.4e-09 Score=99.51 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
.++.|.+.++.+. .+|..+ ...+|++|++.+|.+. .++..+..+++|++++++++.....+|. +..+++|++|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 4667777777665 555555 4678999999999887 5677788899999999998764446664 7888999999999
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSF 211 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~ 211 (220)
+|.....+|..+..+++|+.|++++|...+.+|....+++|+.|.+.++.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 98766688999999999999999987655688876678888888888753
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=1e-10 Score=101.28 Aligned_cols=130 Identities=30% Similarity=0.438 Sum_probs=85.2
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
..++.++|+.|+++ ..|..+..|+ |+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|++
T Consensus 121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence 34566677777766 5555555554 677777777776 56666676677777777777776 56666677777777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhhh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~~ 217 (220)
..|++. .+|+.+..+ .|..||++.|++. .||.. ..|..|+.+-+.+||...-++
T Consensus 197 rRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 197 RRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 777666 455555533 4566777777776 66643 666667777777777665444
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=3.8e-09 Score=96.87 Aligned_cols=123 Identities=23% Similarity=0.251 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCCCCccC--Cccc----------CC---C-CCCcEEEccCCcCCCCCccccCC-----------------
Q 027683 81 NRVTRLDLGNSNLSGRL--VPEL----------GK---L-EHLQYLELYKNNIQGTIPVELGN----------------- 127 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~--~~~l----------~~---l-~~L~~L~L~~n~l~~~~p~~l~~----------------- 127 (220)
.+++.|++++|.+++.. |..+ .. + .+|++|++++|++++ +|.....
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l 380 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPAL 380 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCccc
Confidence 46777777777776421 1111 11 1 257777777777773 4432111
Q ss_pred CCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCccc
Q 027683 128 LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNK 206 (220)
Q Consensus 128 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~ 206 (220)
..+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.. ..++++..++
T Consensus 381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 123455555555555 23332 234556666666665 34432 234566666666666 56653 5666777777
Q ss_pred ccccccc
Q 027683 207 YVSSFCN 213 (220)
Q Consensus 207 l~~n~~~ 213 (220)
+.+|+.+
T Consensus 452 Ls~N~Ls 458 (788)
T PRK15387 452 LEGNPLS 458 (788)
T ss_pred CCCCCCC
Confidence 7777665
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=3.1e-10 Score=94.19 Aligned_cols=132 Identities=30% Similarity=0.338 Sum_probs=58.8
Q ss_pred CEEEEEcCCCCCCcc----CCcccCCCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCCC----Ccccc
Q 027683 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPSL 149 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~ 149 (220)
++++|++++|.+++. +...+..+++|++|++++|.+++. ++..+...++|++|++++|.+++. +...+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 455555555555421 122233444555555555555421 122233344555555555555422 12233
Q ss_pred cCCCCCCEEEccCCcCCCCCccccc-----CCCCCcEEEeecCcCC--Cc--CCCC-CCCCCCCcccccccccc
Q 027683 150 AKLKSLVFLRLNDNRLTGQIPRELV-----GISSLKVVDVSSNDLC--GT--IPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~--g~--~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
..+++|++|++++|.+++.....+. ..+.|++|++++|.++ +. +... ..+++++.+++.+|...
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 4455566666665555531111111 1245566666665554 11 1111 22345555555555443
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.83 E-value=4.6e-10 Score=101.85 Aligned_cols=106 Identities=31% Similarity=0.411 Sum_probs=92.1
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..+++.|+|++|++.......+.++..|+.|++++|+++ .+|..+..++.|++|...+|++. .+| .+..++.|+.+|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 468999999999999665566899999999999999999 78899999999999999999998 788 789999999999
Q ss_pred ccCCcCCCC-CcccccCCCCCcEEEeecCcC
Q 027683 160 LNDNRLTGQ-IPRELVGISSLKVVDVSSNDL 189 (220)
Q Consensus 160 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l 189 (220)
++.|+++.. +|.. ..-++|++||+++|.-
T Consensus 459 lS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 999999853 3332 2338999999999973
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.80 E-value=1.8e-08 Score=92.42 Aligned_cols=98 Identities=28% Similarity=0.455 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++++|.++ .+|..+ .+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 357777788777773 443 2467888888888887 34532 356777788877776 445422 45777888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 195 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 195 (220)
++|+++ .+|.. .++|+.|++++|+++ .+|.
T Consensus 290 s~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~ 319 (788)
T PRK15387 290 FGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA 319 (788)
T ss_pred cCCccc-ccccc---ccccceeECCCCccc-cCCC
Confidence 888887 45542 467888888888887 3443
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=8.7e-10 Score=91.88 Aligned_cols=129 Identities=23% Similarity=0.248 Sum_probs=104.1
Q ss_pred EEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccC-Cc
Q 027683 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND-NR 164 (220)
Q Consensus 86 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~ 164 (220)
++-++.+++ .+|..+. +.-..++|..|+|+...|..|+.+++|+.|||++|.|+..-|+.|.+++++..|-+.+ |+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 344445555 5555543 3568899999999987888999999999999999999988899999999998887766 99
Q ss_pred CCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhhh
Q 027683 165 LTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 165 l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~~ 217 (220)
|+...-+.|.++..|+.|.+.-|++....... +.+++++.|++-.|-++.+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 99666678899999999999999998444333 778888888888887777665
No 31
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.68 E-value=3.6e-08 Score=57.36 Aligned_cols=40 Identities=45% Similarity=1.061 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhCC-CCCCCCCCCCCCC-CCCCCCcceeeC
Q 027683 39 NSEGDALYALRRSLS-DPDNVLQSWDPTL-VNPCTWFHITCN 78 (220)
Q Consensus 39 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~-~~~c~~~gv~c~ 78 (220)
++|+++|++||+++. ++...+.+|+... .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999998 5678899998763 789999999995
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.1e-08 Score=87.71 Aligned_cols=104 Identities=37% Similarity=0.603 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCC-CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLE-HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++.+++.+|.++ .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 35677777777777 4555555553 7777777777776 45556677777777777777777 5555555667777777
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSND 188 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 188 (220)
+++|++. .+|........|+++.+++|+
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 7777776 555544444446666666664
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=3.6e-09 Score=85.74 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=88.4
Q ss_pred cCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 027683 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (220)
Q Consensus 101 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 180 (220)
+...+.|+++|+++|.|+ .+..+..-.|.++.|++++|.+. .+ +.+..+++|+.|||++|.++ .+.+.-..+.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 344567899999999998 56667788899999999999997 33 44888999999999999988 5555556788899
Q ss_pred EEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 181 VVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 181 ~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
.|.+++|.+. .+...+.+..+..|++.+|.++.+
T Consensus 356 tL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 356 TLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred eeehhhhhHh-hhhhhHhhhhheeccccccchhhH
Confidence 9999999887 555557788888888988877654
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=9.7e-09 Score=88.13 Aligned_cols=127 Identities=29% Similarity=0.491 Sum_probs=91.4
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
+++.+++++|.+. .++..+..++.|+.|++++|++. .+|......+.|+.|++++|+++ .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 7999999999998 55566788999999999999998 56655557888888899998888 666655455556666666
Q ss_pred CCc-----------------------CCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 162 DNR-----------------------LTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 162 ~n~-----------------------l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+|. +. ..+..+..+++++.|++++|.++ .++..+.+.+++.+++.+|...
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 663 22 12344556667777777777777 5555666777777777776543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=5.1e-09 Score=90.90 Aligned_cols=107 Identities=31% Similarity=0.528 Sum_probs=95.9
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
-++.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+.+|++. .+|+++..+ .|..||++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence 3788889999998 77888999999999999999998 78889999999999999999998 788888854 58999999
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCC
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 194 (220)
.|++. .+|-.|.+++.|++|-|.+|.++ +-|
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP 250 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP 250 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence 99999 88999999999999999999998 434
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.7e-08 Score=85.15 Aligned_cols=142 Identities=20% Similarity=0.150 Sum_probs=92.1
Q ss_pred CCCcceeeCCCCCEEEEEcCCCCCCccC-CcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCc--
Q 027683 70 CTWFHITCNQDNRVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-- 146 (220)
Q Consensus 70 c~~~gv~c~~~~~l~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-- 146 (220)
|.|....-....+++.|.+++|+++... ......+++|+.|++..|...........-+..|+.|||++|.+- ..+
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~ 264 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQG 264 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccc
Confidence 3333333334566777777777777221 223455778888888888532233333455677888999998876 334
Q ss_pred ccccCCCCCCEEEccCCcCCCC-Cccc-----ccCCCCCcEEEeecCcCCCcCCCC---CCCCCCCcccccccccc
Q 027683 147 PSLAKLKSLVFLRLNDNRLTGQ-IPRE-----LVGISSLKVVDVSSNDLCGTIPTS---GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~g~~p~~---~~l~~l~~l~l~~n~~~ 213 (220)
...+.++.|+.|+++.+++... .|+. -..+++|++|++..|++. .++.. ..++++..+.+..|+.|
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 3467888899999998888752 3332 346789999999999986 44443 45566667777676654
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=8.4e-10 Score=98.15 Aligned_cols=126 Identities=22% Similarity=0.205 Sum_probs=98.2
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
.+...+.+.|.+. .....+.-++.|+.|+|++|+++... .+..+++|++|||++|.++ .+|..-..-.+|+.|++.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4566777888777 55667788899999999999998543 7889999999999999998 666532222349999999
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCc--CCCCCCCCCCCcccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGT--IPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~--~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+|-++. + ..+.++++|+.||+++|-+.+. +-..+.+..|..|.+.|||.-
T Consensus 241 nN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999873 2 3578899999999999988743 222367788888999999853
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=3.2e-09 Score=76.66 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
-+++.+++++|.+....+.--..++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 46777778888777333332334556777777777777 56767777777777777777777 66766666777777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCC
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 194 (220)
.+|.+. ++|-.+..-...-..++.++.+.+.-+
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 777766 444333222222333445555554443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=1.3e-07 Score=88.27 Aligned_cols=106 Identities=28% Similarity=0.401 Sum_probs=74.1
Q ss_pred CEEEEEcCCCC--CCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 82 RVTRLDLGNSN--LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 82 ~l~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++.|-+.+|. +.......|..++.|++||+++|.--+.+|..++.+-+|++|++++..++ .+|..++++.+|.+||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46666666664 33233333667778888888877666677777887888888888888877 7777788888888888
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSND 188 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 188 (220)
+..+.....+|.....+.+|++|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 77776554556666667778877776543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=1.2e-07 Score=82.18 Aligned_cols=106 Identities=31% Similarity=0.361 Sum_probs=50.2
Q ss_pred cCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 027683 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (220)
Q Consensus 101 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 180 (220)
+..+.+|+.+++.+|.+.+ +...+..+++|++|++++|.|+.. ..+..++.|+.|++.+|.+.. + ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-c-cCCccchhhh
Confidence 4445555555555555552 222244455555555555555522 123444445555555555541 1 2233355555
Q ss_pred EEEeecCcCCCcCCC--CCCCCCCCccccccccc
Q 027683 181 VVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 181 ~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~ 212 (220)
.+++++|+++ .+.. ...+.++..+.+.+|..
T Consensus 166 ~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIV-DIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhh-hhhhhhhhhccchHHHhccCCch
Confidence 5555555555 2322 23444444454444443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.29 E-value=5e-07 Score=84.50 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=99.3
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCc--CCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN--IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++.+.+-+|.+. .++... ..+.|++|-+.+|. +.......|..++.|++||+++|.=-+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4667777777665 333322 33479999999996 5534455688999999999999876669999999999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSS 210 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n 210 (220)
+++..++ .+|..+.+++.|.+|++..+.....+|.. ..+.+|+.|.+...
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 9999999 89999999999999999988766566554 45888888876554
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=1.1e-06 Score=51.28 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=5.9
Q ss_pred ccCCCCCCEEEccCCc
Q 027683 149 LAKLKSLVFLRLNDNR 164 (220)
Q Consensus 149 ~~~l~~L~~L~L~~n~ 164 (220)
++++++|++|++++|+
T Consensus 20 l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNP 35 (44)
T ss_dssp GTTCTTSSEEEETSSC
T ss_pred HhCCCCCCEEEecCCC
Confidence 3333333333333333
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1e-06 Score=51.43 Aligned_cols=40 Identities=33% Similarity=0.581 Sum_probs=33.3
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCC
Q 027683 153 KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194 (220)
Q Consensus 153 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 194 (220)
++|++|++++|+++ .+|..+.++++|++|++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 47899999999999 67777999999999999999998 444
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2.7e-07 Score=79.92 Aligned_cols=105 Identities=32% Similarity=0.381 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
...++.+++.+|.+. .+...+..+.+|++|++++|.|+... .+..++.|+.|++++|.++ .+ ..+..++.|+.++
T Consensus 94 ~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 467899999999998 34333778999999999999998543 3677778999999999998 33 3456688999999
Q ss_pred ccCCcCCCCCccc-ccCCCCCcEEEeecCcCC
Q 027683 160 LNDNRLTGQIPRE-LVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 160 L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 190 (220)
+++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 99999984433 1 466777888888888766
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.21 E-value=2.9e-06 Score=65.24 Aligned_cols=101 Identities=28% Similarity=0.302 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCc--ccccCCCCCCEEE
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFLR 159 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ 159 (220)
....+||++|.+.. .+.|..++.|.+|.+++|+|+...|.--..+++|+.|.+.+|.+. .+- +.+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 34567777776652 234666777777777777777555544445566777777777765 221 2355667777777
Q ss_pred ccCCcCCCC---CcccccCCCCCcEEEee
Q 027683 160 LNDNRLTGQ---IPRELVGISSLKVVDVS 185 (220)
Q Consensus 160 L~~n~l~~~---~p~~~~~l~~L~~L~l~ 185 (220)
+-+|.+... ---.+..+|+|++||..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 777766521 11234566777777664
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.3e-07 Score=68.49 Aligned_cols=112 Identities=27% Similarity=0.366 Sum_probs=89.6
Q ss_pred CCCEEEEEcCCCCCCccCCc---ccCCCCCCcEEEccCCcCCCCCccccC-CCCCCcEEeCcCCcCCCCCcccccCCCCC
Q 027683 80 DNRVTRLDLGNSNLSGRLVP---ELGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNNISGKIPPSLAKLKSL 155 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 155 (220)
...+-.++|+.+.+. .+++ .+....+|...++++|.+.. .|..|. ..+.++.+++++|.++ .+|.++..++.|
T Consensus 26 akE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL 102 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL 102 (177)
T ss_pred HHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh
Confidence 344556777887765 3333 35556778889999999984 455554 4568999999999999 789999999999
Q ss_pred CEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC
Q 027683 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 196 (220)
Q Consensus 156 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~ 196 (220)
+.+++..|.+. ..|+.+..+.++..|+..+|... .+|..
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 99999999999 77888888999999999999887 66654
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.8e-07 Score=76.10 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCCCccC--CcccCCCCCCcEEEccCCcCCCCCccc-cCCCCCCcEEeCcCCcCCC--------------
Q 027683 81 NRVTRLDLGNSNLSGRL--VPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNISG-------------- 143 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~-------------- 143 (220)
.+++.|||++|-+.... -.....+++|+.|+++.|++....... -..+++|+.|.++.|.++.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 45667777776555221 122455666666666666664221111 1133445555555554442
Q ss_pred -----------CCcccccCCCCCCEEEccCCcCCCCCc--ccccCCCCCcEEEeecCcCCCc-CCCC------CCCCCCC
Q 027683 144 -----------KIPPSLAKLKSLVFLRLNDNRLTGQIP--RELVGISSLKVVDVSSNDLCGT-IPTS------GPFEHIP 203 (220)
Q Consensus 144 -----------~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~-~p~~------~~l~~l~ 203 (220)
.......-+..|+.|||++|++.. .+ ...+.++.|+.|+++.+.+... +|+. -.+++++
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 111222334566777777777653 22 3345677777777777766521 2222 4567777
Q ss_pred ccccccccc
Q 027683 204 LNKYVSSFC 212 (220)
Q Consensus 204 ~l~l~~n~~ 212 (220)
.|.+..|++
T Consensus 305 ~L~i~~N~I 313 (505)
T KOG3207|consen 305 YLNISENNI 313 (505)
T ss_pred eeecccCcc
Confidence 777766665
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=7.6e-06 Score=62.96 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=87.5
Q ss_pred EEEEcCCCCCCccCCcccCC-CCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccC
Q 027683 84 TRLDLGNSNLSGRLVPELGK-LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (220)
Q Consensus 84 ~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (220)
+++++.+..+.. +- .++. +.....+|+++|.+.. + ..|..++.|.+|.+++|+|+..-|..-.-+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~-ie-nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPV-IE-NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccc-hh-hccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 456676665541 11 1222 3467789999999863 3 4688999999999999999966666555678899999999
Q ss_pred CcCCCC-CcccccCCCCCcEEEeecCcCCCcCCCC-----CCCCCCCcccccc
Q 027683 163 NRLTGQ-IPRELVGISSLKVVDVSSNDLCGTIPTS-----GPFEHIPLNKYVS 209 (220)
Q Consensus 163 n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p~~-----~~l~~l~~l~l~~ 209 (220)
|.+... .-+.+..+|+|++|.+-+|.++. -+.. ..++.++.++|++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 998732 12346788999999999999883 3322 4677788888765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=4.8e-07 Score=81.08 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEe
Q 027683 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDV 184 (220)
Q Consensus 105 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 184 (220)
..|...+.++|.+. .....+.-++.++.|+|++|+++.. +.+..+++|++||+++|.++ .+|..-..--.|+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 35677788888887 5566778889999999999999843 47889999999999999998 56653322234999999
Q ss_pred ecCcCCCcCCCCCCCCCCCccccccccc
Q 027683 185 SSNDLCGTIPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 185 ~~N~l~g~~p~~~~l~~l~~l~l~~n~~ 212 (220)
++|.++ .+-...++.+|+-|+++.|..
T Consensus 240 rnN~l~-tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 240 RNNALT-TLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cccHHH-hhhhHHhhhhhhccchhHhhh
Confidence 999998 665667888888888887643
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=4.3e-05 Score=60.91 Aligned_cols=81 Identities=28% Similarity=0.333 Sum_probs=40.7
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCC--cCCCCCccccCCCCCCcEEeCcCCcCCCCCccc---ccCCCCCC
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN--NIQGTIPVELGNLKSLISLDLYNNNISGKIPPS---LAKLKSLV 156 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~ 156 (220)
.++.+++.+.+++.. ..+..+++|++|.++.| ++.+..+.-...+++|+++++++|++.. +.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 344444554444421 23445566666666666 4444444334444666666666666551 222 33344455
Q ss_pred EEEccCCcCC
Q 027683 157 FLRLNDNRLT 166 (220)
Q Consensus 157 ~L~L~~n~l~ 166 (220)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5566555544
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=1.8e-06 Score=69.57 Aligned_cols=102 Identities=27% Similarity=0.294 Sum_probs=73.4
Q ss_pred eCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCc--ccccCCCC
Q 027683 77 CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKS 154 (220)
Q Consensus 77 c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~ 154 (220)
|.....++.|+.-|+++++.. ...+++.|++|.|+-|+|+..- .+..|++|+.|+|..|.|.. +. .-+.++++
T Consensus 15 ~sdl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlps 89 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPS 89 (388)
T ss_pred hhHHHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCch
Confidence 333456777888888877432 3567888999999999988443 37788899999999998873 32 23678889
Q ss_pred CCEEEccCCcCCCCCcc-----cccCCCCCcEEE
Q 027683 155 LVFLRLNDNRLTGQIPR-----ELVGISSLKVVD 183 (220)
Q Consensus 155 L~~L~L~~n~l~~~~p~-----~~~~l~~L~~L~ 183 (220)
|+.|.|..|...|.-+. .+..+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998888765543 344577777665
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=2.1e-05 Score=64.04 Aligned_cols=83 Identities=29% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCCCCcc--CCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCc-ccccCCCCCCE
Q 027683 81 NRVTRLDLGNSNLSGR--LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-PSLAKLKSLVF 157 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 157 (220)
.+|+++||.+|.+++. +...+.+++.|++|+++.|++...+...-....+|+.|-|.+..+.+.-. ..+..+|+++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3677777777777632 22335667777777777777764332211244567777776666654322 23455666666
Q ss_pred EEccCC
Q 027683 158 LRLNDN 163 (220)
Q Consensus 158 L~L~~n 163 (220)
++++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 666666
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=3.1e-05 Score=71.00 Aligned_cols=131 Identities=20% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCCCCc-cCCccc-CCCCCCcEEEccCCcCCCC-CccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCE
Q 027683 81 NRVTRLDLGNSNLSG-RLVPEL-GKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 157 (220)
.+++.|+++|...-. ..+..+ .-+|.|+.|.+.+-.+... ......++++|..||+|+.+++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 356777777654321 111222 3367777777777666422 123345677777777777777633 55667777777
Q ss_pred EEccCCcCCC-CCcccccCCCCCcEEEeecCcCCCc--CC-----CCCCCCCCCcccccccccc
Q 027683 158 LRLNDNRLTG-QIPRELVGISSLKVVDVSSNDLCGT--IP-----TSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 158 L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~--~p-----~~~~l~~l~~l~l~~n~~~ 213 (220)
|.+.+=.+.. ..-..+.++++|++||+|....... +. -...+|+|+.|+.+|...+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7665544442 1223456677777777776544311 11 1134666666666665444
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00056 Score=58.75 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=7.3
Q ss_pred CCcEEEeecCcCC
Q 027683 178 SLKVVDVSSNDLC 190 (220)
Q Consensus 178 ~L~~L~l~~N~l~ 190 (220)
+|++|++++|...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 4666666655543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.30 E-value=2.9e-05 Score=64.27 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCCCCCccCC----cccCCCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCCC----Ccc
Q 027683 80 DNRVTRLDLGNSNLSGRLV----PELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPP 147 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 147 (220)
...++.+....|++..... ..|...+.|+.+.+..|.|... +...+..+++|++||+.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3578888888888764322 2355667888888888887421 223467788888888888888732 223
Q ss_pred cccCCCCCCEEEccCCcCCCCCcc----cc-cCCCCCcEEEeecCcCCCc------CCCCCCCCCCCccccccccc
Q 027683 148 SLAKLKSLVFLRLNDNRLTGQIPR----EL-VGISSLKVVDVSSNDLCGT------IPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~p~----~~-~~l~~L~~L~l~~N~l~g~------~p~~~~l~~l~~l~l~~n~~ 212 (220)
.+..++.|+.++++++.+...-.. .+ ...|+|+++.+.+|.++.. .+. +..+.+..|.+.+|..
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCcccc
Confidence 466677888888888888643222 22 2467888888888887721 111 3467777777777765
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.30 E-value=0.0001 Score=61.13 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCCCccCCcc----cCCCCCCcEEEccCCcCCCC-------------CccccCCCCCCcEEeCcCCcCC
Q 027683 81 NRVTRLDLGNSNLSGRLVPE----LGKLEHLQYLELYKNNIQGT-------------IPVELGNLKSLISLDLYNNNIS 142 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~Ls~n~l~ 142 (220)
+++++|+|++|.+...-++. +..+..|++|.|.+|.+... .....+.-++|+++..++|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 47788888888776444333 33456677777777766421 1112234456666666666654
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00024 Score=56.73 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=69.6
Q ss_pred cCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCC--cCCCCCcccccCCCCCCEEEccCCcCCCCCcc--
Q 027683 96 RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN--NISGKIPPSLAKLKSLVFLRLNDNRLTGQIPR-- 171 (220)
Q Consensus 96 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-- 171 (220)
.+......+..|+.+++.+..++. -..+..+++|+.|.++.| ++++.++.....+++|+++++++|+++. ++
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred Ccccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 344445566778888887777762 235788999999999999 6666666666677999999999999973 33
Q ss_pred -cccCCCCCcEEEeecCcCCC
Q 027683 172 -ELVGISSLKVVDVSSNDLCG 191 (220)
Q Consensus 172 -~~~~l~~L~~L~l~~N~l~g 191 (220)
.+..+.+|..|++.+|..++
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcchhhhhcccCCccc
Confidence 34567788899999888774
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00016 Score=66.40 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCCCcc-CCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCC-CCcccccCCCCCCE
Q 027683 80 DNRVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF 157 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~ 157 (220)
.+.++.|.+.+..+... ...-..++++|..||+++..++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 56788999988776522 223456789999999999998843 678889999998887766652 11234678899999
Q ss_pred EEccCCcCCCCC--c----ccccCCCCCcEEEeecCcCCCc
Q 027683 158 LRLNDNRLTGQI--P----RELVGISSLKVVDVSSNDLCGT 192 (220)
Q Consensus 158 L~L~~n~l~~~~--p----~~~~~l~~L~~L~l~~N~l~g~ 192 (220)
||+|..+..... . +.-..+|+|+.||.+++.+.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999987765321 1 2224588999999998876633
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00014 Score=59.39 Aligned_cols=108 Identities=25% Similarity=0.236 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCCccCCc-cc-CCCCCCcEEEccCCcCCCC--CccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEE
Q 027683 83 VTRLDLGNSNLSGRLVP-EL-GKLEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (220)
Q Consensus 83 l~~L~L~~n~l~~~~~~-~l-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 158 (220)
+.-+.+.++.+...-.. .| ...+.++.+|+.+|.++.. +-..+.++|.|+.|+++.|.+...+...-....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 34455566655422111 12 2356789999999999742 33446789999999999999884433222466789999
Q ss_pred EccCCcCCCC-CcccccCCCCCcEEEeecCcCC
Q 027683 159 RLNDNRLTGQ-IPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 159 ~L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
-|.+..+... ....+..+|.++.|.++.|.+.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 9988877542 3344567888888888888554
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.55 E-value=0.012 Score=50.79 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCC-cCCCCCccccCCCCCCcEEeCcCCcCC--CCCcccccCC-----
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN-NIQGTIPVELGNLKSLISLDLYNNNIS--GKIPPSLAKL----- 152 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l----- 152 (220)
..|++|.++++.--..+|..+. .+|++|++++| .+. .+|. +|+.|++..+... +.+|..+..+
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheecccc
Confidence 3577777766433224443332 46777777776 443 3443 3555555544321 1344443322
Q ss_pred -------------CCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCc
Q 027683 153 -------------KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSND 188 (220)
Q Consensus 153 -------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 188 (220)
++|++|++++|... ..|+.+. .+|+.|+++.|.
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 47888999888865 4454333 488999998763
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.33 E-value=0.004 Score=50.49 Aligned_cols=113 Identities=22% Similarity=0.188 Sum_probs=56.4
Q ss_pred cCCCCCCcEEEccCCcCCCCCccc----cCCCCCCcEEeCcCCcCCCCCccc-------------ccCCCCCCEEEccCC
Q 027683 101 LGKLEHLQYLELYKNNIQGTIPVE----LGNLKSLISLDLYNNNISGKIPPS-------------LAKLKSLVFLRLNDN 163 (220)
Q Consensus 101 l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~-------------~~~l~~L~~L~L~~n 163 (220)
+.++++|+..++|.|.+....|.. +..-+.|++|.+++|.+...--.- ...-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445666666666666665444332 334456666666666553111011 123355666666666
Q ss_pred cCCCCCccccc----CC-CCCcEEEeecCcCCCcC-C-----CCCCCCCCCcccccccccch
Q 027683 164 RLTGQIPRELV----GI-SSLKVVDVSSNDLCGTI-P-----TSGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 164 ~l~~~~p~~~~----~l-~~L~~L~l~~N~l~g~~-p-----~~~~l~~l~~l~l~~n~~~~ 214 (220)
++. ..+.... .. ..|+++.+..|.+...- . .....++|..|+++.|....
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 664 2222111 11 25666666666655210 0 00345667777777765543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.014 Score=41.54 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.+.+.. .+.......|..+.+|+.+.+..+ +.......|..+++++.+.+.. .+.......+..+++++.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3567777764 455444556777778888888775 5544555677777788888865 333233345666788888887
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeec
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSS 186 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~ 186 (220)
..+ +.......+.+. +++.+.+..
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC
Confidence 665 442333445554 777766654
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.15 E-value=0.011 Score=48.01 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCCCccCCcc----cCCCCCCcEEEccCCcCCCCCccc-------------cCCCCCCcEEeCcCCcCCC
Q 027683 81 NRVTRLDLGNSNLSGRLVPE----LGKLEHLQYLELYKNNIQGTIPVE-------------LGNLKSLISLDLYNNNISG 143 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~Ls~n~l~~ 143 (220)
.+++.++|++|.+....|+. +.+-..|++|.+++|.+...--.. ..+-|.|+.....+|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 57888888988888666654 445577888888888775321111 234577888888888876
Q ss_pred CCccc-----ccCCCCCCEEEccCCcCCCCC-----cccccCCCCCcEEEeecCcCC
Q 027683 144 KIPPS-----LAKLKSLVFLRLNDNRLTGQI-----PRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 144 ~~p~~-----~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~l~~N~l~ 190 (220)
..|.. +..-..|.++.+..|.+...- -..+..+.+|++||+..|-++
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 33321 233356777777777765210 112345667777777777766
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.00025 Score=57.96 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCCCCEEEccCCcC-CCCCcccccCCCCCcEEEeecCcC
Q 027683 151 KLKSLVFLRLNDNRL-TGQIPRELVGISSLKVVDVSSNDL 189 (220)
Q Consensus 151 ~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~l~~N~l 189 (220)
.+++|.+|||++|.. +...-..|.+++.|++|.++.++.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 456667777766543 322223445666677777666653
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.14 E-value=0.014 Score=41.48 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=60.9
Q ss_pred cccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 027683 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISS 178 (220)
Q Consensus 99 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 178 (220)
..|.++.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......+.++++++.+.+.+ .+.......|...++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4577888999999985 566556677899999999999886 6644445688888999999976 444344456777899
Q ss_pred CcEEEeecCcCCCcCCCC--CCCCCCCcccccc
Q 027683 179 LKVVDVSSNDLCGTIPTS--GPFEHIPLNKYVS 209 (220)
Q Consensus 179 L~~L~l~~N~l~g~~p~~--~~l~~l~~l~l~~ 209 (220)
++.+++..+ +. .++.. ... ++..+.+.+
T Consensus 83 l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 999999765 43 33332 233 555555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.00018 Score=58.24 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=74.1
Q ss_pred CCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEE
Q 027683 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIP-RELVGISSLKVV 182 (220)
Q Consensus 104 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 182 (220)
+.+.+.|+.-++.++.+ .....++.|++|.|+-|+|+.. ..+..+++|++|+|..|.|..... ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677888888888732 3456889999999999999844 447899999999999999974211 345789999999
Q ss_pred EeecCcCCCcCCCC------CCCCCCCccc
Q 027683 183 DVSSNDLCGTIPTS------GPFEHIPLNK 206 (220)
Q Consensus 183 ~l~~N~l~g~~p~~------~~l~~l~~l~ 206 (220)
-|..|.-.|.-+.. ..+++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999988765432 3455555443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.0023 Score=31.20 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=4.4
Q ss_pred cEEEccCCcCC
Q 027683 108 QYLELYKNNIQ 118 (220)
Q Consensus 108 ~~L~L~~n~l~ 118 (220)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0037 Score=30.45 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=13.3
Q ss_pred CCcEEeCcCCcCCCCCcccccC
Q 027683 130 SLISLDLYNNNISGKIPPSLAK 151 (220)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~~~~ 151 (220)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777777 56655543
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.29 E-value=0.00019 Score=56.72 Aligned_cols=84 Identities=26% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..+++.||++.|++- .....|..++.+..|+++.|.+. ..|..+.....+..+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 457888999888876 44455777788888999998887 67888888888888888888888 7888888889999888
Q ss_pred ccCCcCC
Q 027683 160 LNDNRLT 166 (220)
Q Consensus 160 L~~n~l~ 166 (220)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888765
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.24 E-value=0.0003 Score=55.64 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=74.8
Q ss_pred cccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 027683 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISS 178 (220)
Q Consensus 99 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 178 (220)
.++..+...+.||++.|++- ..-..|.-++.+..||++.|.+. ..|..++....++.+++..|..+ ..|..++..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34566778889999999886 34556777888999999999998 78888888888999999988888 78888999999
Q ss_pred CcEEEeecCcCC
Q 027683 179 LKVVDVSSNDLC 190 (220)
Q Consensus 179 L~~L~l~~N~l~ 190 (220)
++++++-.|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999888776
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.52 E-value=0.021 Score=25.90 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=4.8
Q ss_pred CCcEEEeecCcCC
Q 027683 178 SLKVVDVSSNDLC 190 (220)
Q Consensus 178 ~L~~L~l~~N~l~ 190 (220)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555555443
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.00019 Score=58.66 Aligned_cols=85 Identities=24% Similarity=0.213 Sum_probs=49.6
Q ss_pred CEEEEEcCCCCCCcc-CCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCc-CCCC-CcccccCCCCCCEE
Q 027683 82 RVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN-ISGK-IPPSLAKLKSLVFL 158 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L 158 (220)
+++.+||+...++.. ....+..+.+|+.|.+.++++...+-..+..-.+|+.++++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466777777666522 12234556677777777777766555556666677777776653 3311 11124556666666
Q ss_pred EccCCcCC
Q 027683 159 RLNDNRLT 166 (220)
Q Consensus 159 ~L~~n~l~ 166 (220)
+++++.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66666543
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.96 E-value=0.22 Score=24.92 Aligned_cols=13 Identities=54% Similarity=0.687 Sum_probs=6.4
Q ss_pred CCcEEeCcCCcCC
Q 027683 130 SLISLDLYNNNIS 142 (220)
Q Consensus 130 ~L~~L~Ls~n~l~ 142 (220)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555544
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.96 E-value=0.22 Score=24.92 Aligned_cols=13 Identities=54% Similarity=0.687 Sum_probs=6.4
Q ss_pred CCcEEeCcCCcCC
Q 027683 130 SLISLDLYNNNIS 142 (220)
Q Consensus 130 ~L~~L~Ls~n~l~ 142 (220)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555544
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.41 E-value=0.73 Score=23.32 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=9.1
Q ss_pred CCcEEeCcCCcCCCCCcc
Q 027683 130 SLISLDLYNNNISGKIPP 147 (220)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~ 147 (220)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555555555555 4443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.87 E-value=0.15 Score=39.69 Aligned_cols=81 Identities=27% Similarity=0.258 Sum_probs=46.4
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCC-Ccccc-CCCCCCcEEeCcCC-cCCCCCcccccCCCCCCEE
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVEL-GNLKSLISLDLYNN-NISGKIPPSLAKLKSLVFL 158 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L 158 (220)
.|+.++-++..|..+--..+..++.++.|.+.++.--+. .-..+ +-.++|+.|++++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 477777777777655555566677777777766642110 00001 13457777777766 3554434445566666666
Q ss_pred EccC
Q 027683 159 RLND 162 (220)
Q Consensus 159 ~L~~ 162 (220)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6544
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.25 E-value=0.31 Score=42.43 Aligned_cols=89 Identities=24% Similarity=0.154 Sum_probs=43.2
Q ss_pred cCCCCCCcEEEccCC-cCCCCC----ccccCCCCCCcEEeCcCCc-CCCCCccccc-CCCCCCEEEccCCc-CCCC-Ccc
Q 027683 101 LGKLEHLQYLELYKN-NIQGTI----PVELGNLKSLISLDLYNNN-ISGKIPPSLA-KLKSLVFLRLNDNR-LTGQ-IPR 171 (220)
Q Consensus 101 l~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~-~p~ 171 (220)
....+.|+.|+++++ ...... ......+++|+.++++.+. ++...-..+. .+++|++|.+.++. +++. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 445566677776652 111011 1123345666667766666 4432222222 25667776655554 3321 112
Q ss_pred cccCCCCCcEEEeecCcC
Q 027683 172 ELVGISSLKVVDVSSNDL 189 (220)
Q Consensus 172 ~~~~l~~L~~L~l~~N~l 189 (220)
....++.|++|+++++..
T Consensus 290 i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhcCcccEEeeecCcc
Confidence 223456677777765543
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.45 E-value=1.3 Score=22.44 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=6.0
Q ss_pred CCcEEeCcCCcCC
Q 027683 130 SLISLDLYNNNIS 142 (220)
Q Consensus 130 ~L~~L~Ls~n~l~ 142 (220)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.14 E-value=1.5 Score=21.27 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=4.7
Q ss_pred CCcEEEccCCcC
Q 027683 106 HLQYLELYKNNI 117 (220)
Q Consensus 106 ~L~~L~L~~n~l 117 (220)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.98 E-value=0.19 Score=39.17 Aligned_cols=81 Identities=20% Similarity=0.121 Sum_probs=53.5
Q ss_pred CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCC-CCccccc-CCCCCCEEEccCCc-CCCCCcccccCCCCCcEE
Q 027683 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLA-KLKSLVFLRLNDNR-LTGQIPRELVGISSLKVV 182 (220)
Q Consensus 106 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~-~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L 182 (220)
.++.+|-++..|...--..+.+++.++.|.+.++.--+ .--+-++ -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47888888888876555667788888888888775221 1001111 34789999999764 554434456677888877
Q ss_pred Eeec
Q 027683 183 DVSS 186 (220)
Q Consensus 183 ~l~~ 186 (220)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.86 E-value=2.3 Score=21.70 Aligned_cols=13 Identities=54% Similarity=0.677 Sum_probs=6.8
Q ss_pred CCcEEeCcCCcCC
Q 027683 130 SLISLDLYNNNIS 142 (220)
Q Consensus 130 ~L~~L~Ls~n~l~ 142 (220)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.13 E-value=5.3 Score=35.86 Aligned_cols=62 Identities=27% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCCcEEEccCCcCCCC--CccccCCCCCCcEEeCcCC--cCCCCCccccc--CCCCCCEEEccCCcCCC
Q 027683 104 LEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNN--NISGKIPPSLA--KLKSLVFLRLNDNRLTG 167 (220)
Q Consensus 104 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~--~l~~L~~L~L~~n~l~~ 167 (220)
.+.+..++|++|++... +..--...|+|+.|+|++| .+.. ..++. ....|++|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 44555556666655421 1111123456666666666 3321 11121 12345666666666653
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.45 E-value=5.5 Score=35.73 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=49.5
Q ss_pred CCCCCCcEEeCcCCcCCCC--CcccccCCCCCCEEEccCC--cCCCCCccccc--CCCCCcEEEeecCcCCCcCCCC---
Q 027683 126 GNLKSLISLDLYNNNISGK--IPPSLAKLKSLVFLRLNDN--RLTGQIPRELV--GISSLKVVDVSSNDLCGTIPTS--- 196 (220)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~--~l~~L~~L~l~~N~l~g~~p~~--- 196 (220)
.+.+.+..+.|++|++... +...-...|+|..|+|++| .+.. ...+. +...|+.|-+.+|.++.....-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 3556788889999988632 1112234588999999999 4432 22232 2346788999999988554321
Q ss_pred -----CCCCCCCccc
Q 027683 197 -----GPFEHIPLNK 206 (220)
Q Consensus 197 -----~~l~~l~~l~ 206 (220)
..||+|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 2566666554
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=56.95 E-value=5.4 Score=34.66 Aligned_cols=87 Identities=20% Similarity=0.093 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCC-CCCccC----CcccCCCCCCcEEEccCCc-CCCCCcccc-CCCCCCcEEeCcCCc-CCCCCc-cccc
Q 027683 80 DNRVTRLDLGNS-NLSGRL----VPELGKLEHLQYLELYKNN-IQGTIPVEL-GNLKSLISLDLYNNN-ISGKIP-PSLA 150 (220)
Q Consensus 80 ~~~l~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p-~~~~ 150 (220)
..++++|+++++ ...... ......+++|+.++++.+. ++...-..+ ..+++|+.|.+.++. ++...- ....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 356888888763 111111 1223446778888888877 443322222 237788888877666 443222 2234
Q ss_pred CCCCCCEEEccCCcCC
Q 027683 151 KLKSLVFLRLNDNRLT 166 (220)
Q Consensus 151 ~l~~L~~L~L~~n~l~ 166 (220)
.++.|++|+++++...
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 5677888888877653
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.44 E-value=15 Score=39.42 Aligned_cols=32 Identities=31% Similarity=0.268 Sum_probs=27.0
Q ss_pred eCcCCcCCCCCcccccCCCCCCEEEccCCcCC
Q 027683 135 DLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166 (220)
Q Consensus 135 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (220)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999555667888999999999999875
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=46.06 E-value=0.67 Score=41.11 Aligned_cols=108 Identities=30% Similarity=0.347 Sum_probs=47.5
Q ss_pred EEEEEcCCCCCCcc----CCcccCCCCCCcEEEccCCcCCC----CCccccC----CCCCCcEEeCcCCcCCCCC----c
Q 027683 83 VTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQG----TIPVELG----NLKSLISLDLYNNNISGKI----P 146 (220)
Q Consensus 83 l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~Ls~n~l~~~~----p 146 (220)
++++++..+.+++. +...+.....++.++++.|.+.. .++..+. ...++++|.++++.++... -
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 34455555554422 22334445566666666666521 1122222 3455666666666655110 0
Q ss_pred ccccCCCC-CCEEEccCCcCCCC----CcccccCC-CCCcEEEeecCcCC
Q 027683 147 PSLAKLKS-LVFLRLNDNRLTGQ----IPRELVGI-SSLKVVDVSSNDLC 190 (220)
Q Consensus 147 ~~~~~l~~-L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~l~~N~l~ 190 (220)
..+...++ +..+++..|++.+. ....+..+ ..+++++++.|.++
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 11222233 44455555555422 11222223 34455555555555
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.09 E-value=21 Score=17.45 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=5.5
Q ss_pred CCCcEEeCcCC
Q 027683 129 KSLISLDLYNN 139 (220)
Q Consensus 129 ~~L~~L~Ls~n 139 (220)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.74 E-value=22 Score=38.22 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=28.7
Q ss_pred EccCCcCCCCCccccCCCCCCcEEeCcCCcCC
Q 027683 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (220)
Q Consensus 111 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 142 (220)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999777778999999999999999886
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=27.21 E-value=37 Score=29.74 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCCC-CccCCccc-CCCCCCcEEEccCCcCC--CCCccccCCCCCCcEEeCcCCcCC-CC----CcccccC
Q 027683 81 NRVTRLDLGNSNL-SGRLVPEL-GKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNIS-GK----IPPSLAK 151 (220)
Q Consensus 81 ~~l~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~-~~----~p~~~~~ 151 (220)
.+++.+.+.+++. +..--..+ .+.+.|+.+++..+... +.+-.--.+++.|+.+.++.+... .. +...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 4677777777652 21111111 24566777777766542 112222346677888888876542 11 1112234
Q ss_pred CCCCCEEEccCCcCCC-CCcccccCCCCCcEEEeecCc
Q 027683 152 LKSLVFLRLNDNRLTG-QIPRELVGISSLKVVDVSSND 188 (220)
Q Consensus 152 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~ 188 (220)
+..|+.+-++++.... ..-+.+...++|+.+++-+.+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 5667777777776542 222344566677777776543
Done!