Query 027683
Match_columns 220
No_of_seqs 368 out of 3770
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-28 4E-33 203.8 11.9 176 36-213 2-187 (313)
2 3rgz_A Protein brassinosteroid 99.9 5.6E-25 1.9E-29 201.5 12.0 178 33-213 5-236 (768)
3 4eco_A Uncharacterized protein 99.9 2.2E-25 7.7E-30 200.3 6.3 176 39-216 29-321 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 3.5E-25 1.2E-29 204.5 5.3 175 37-216 266-564 (876)
5 4fcg_A Uncharacterized protein 99.9 9.6E-24 3.3E-28 175.5 5.9 179 34-216 21-222 (328)
6 3e6j_A Variable lymphocyte rec 99.9 3.8E-21 1.3E-25 151.9 15.1 146 67-213 16-172 (229)
7 2v9t_B SLIT homolog 2 protein 99.9 9.4E-21 3.2E-25 148.9 13.8 145 68-212 9-164 (220)
8 2o6s_A Variable lymphocyte rec 99.8 2.4E-20 8.2E-25 144.9 15.0 146 68-213 5-161 (208)
9 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-20 8.2E-25 146.5 12.7 146 68-213 9-166 (220)
10 2o6q_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 143.4 14.2 132 82-213 38-170 (270)
11 3m19_A Variable lymphocyte rec 99.8 9.3E-19 3.2E-23 139.8 14.7 133 81-213 59-192 (251)
12 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.7E-23 137.9 15.9 137 81-217 35-172 (251)
13 4g8a_A TOLL-like receptor 4; l 99.8 4.9E-19 1.7E-23 157.5 12.3 135 81-215 52-188 (635)
14 1w8a_A SLIT protein; signaling 99.8 7.8E-19 2.7E-23 135.0 10.3 126 68-193 6-142 (192)
15 3rfs_A Internalin B, repeat mo 99.8 4.1E-18 1.4E-22 137.7 14.8 134 80-213 84-218 (272)
16 2o6r_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 130.3 11.9 127 68-194 5-141 (177)
17 3rgz_A Protein brassinosteroid 99.8 4E-19 1.4E-23 162.7 8.7 126 86-211 613-738 (768)
18 1w8a_A SLIT protein; signaling 99.8 3.2E-18 1.1E-22 131.5 11.9 127 84-213 11-139 (192)
19 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-19 1.6E-23 146.2 7.3 128 82-211 175-302 (313)
20 2z81_A CD282 antigen, TOLL-lik 99.8 2.6E-18 9E-23 151.1 11.6 133 81-213 26-161 (549)
21 2xot_A Amphoterin-induced prot 99.8 3.7E-18 1.3E-22 143.4 11.3 148 68-216 16-179 (361)
22 2ell_A Acidic leucine-rich nuc 99.8 1.9E-18 6.4E-23 129.7 8.4 135 81-217 24-164 (168)
23 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-17 4.7E-22 135.2 14.0 132 82-213 57-190 (285)
24 3vq2_A TLR4, TOLL-like recepto 99.8 7.4E-18 2.5E-22 150.0 13.0 135 81-215 32-168 (606)
25 2o6q_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 132.5 14.9 132 81-212 85-217 (270)
26 3rfs_A Internalin B, repeat mo 99.7 2.6E-17 8.9E-22 133.0 14.6 136 80-217 62-198 (272)
27 1p9a_G Platelet glycoprotein I 99.7 3.3E-17 1.1E-21 133.7 14.6 130 81-212 77-207 (290)
28 3v47_A TOLL-like receptor 5B a 99.7 6.1E-18 2.1E-22 145.5 10.6 135 81-215 30-169 (455)
29 3zyi_A Leucine-rich repeat-con 99.7 1.4E-17 4.9E-22 143.6 13.0 134 81-215 75-233 (452)
30 3v47_A TOLL-like receptor 5B a 99.7 1.3E-17 4.3E-22 143.5 12.2 133 81-213 275-408 (455)
31 2z80_A TOLL-like receptor 2, v 99.7 1.7E-17 5.8E-22 138.7 11.8 133 81-213 52-187 (353)
32 2wfh_A SLIT homolog 2 protein 99.7 2.7E-17 9.1E-22 126.6 11.8 121 86-211 15-137 (193)
33 4fcg_A Uncharacterized protein 99.7 1.1E-17 3.6E-22 139.0 10.1 129 81-211 150-288 (328)
34 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-17 1.4E-21 132.4 13.3 133 81-213 80-214 (285)
35 3t6q_A CD180 antigen; protein- 99.7 2.2E-17 7.7E-22 146.8 12.8 135 81-215 33-168 (606)
36 2wfh_A SLIT homolog 2 protein 99.7 6.5E-17 2.2E-21 124.4 13.7 123 68-191 8-140 (193)
37 2je0_A Acidic leucine-rich nuc 99.7 3.2E-18 1.1E-22 126.0 6.0 126 81-208 17-148 (149)
38 2z66_A Variable lymphocyte rec 99.7 2E-17 6.8E-22 135.5 11.1 133 81-213 126-261 (306)
39 2z62_A TOLL-like receptor 4, v 99.7 2.4E-17 8.2E-22 133.1 11.4 132 82-213 29-162 (276)
40 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-17 1E-21 128.8 11.3 114 80-193 56-169 (220)
41 2v9t_B SLIT homolog 2 protein 99.7 8.3E-17 2.8E-21 126.2 13.3 141 69-217 4-145 (220)
42 1p9a_G Platelet glycoprotein I 99.7 9.2E-17 3.1E-21 131.1 13.5 134 81-218 55-190 (290)
43 3oja_B Anopheles plasmodium-re 99.7 2.6E-17 9E-22 146.7 11.1 131 82-212 52-183 (597)
44 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.3E-21 124.9 14.3 138 72-217 14-152 (229)
45 2o6r_A Variable lymphocyte rec 99.7 2.2E-16 7.5E-21 119.4 14.0 127 84-213 10-137 (177)
46 3o6n_A APL1; leucine-rich repe 99.7 2.8E-17 9.6E-22 139.0 9.6 131 82-212 46-177 (390)
47 2id5_A Lingo-1, leucine rich r 99.7 6.3E-17 2.2E-21 140.2 12.0 134 81-214 32-166 (477)
48 3j0a_A TOLL-like receptor 5; m 99.7 4.5E-17 1.5E-21 150.6 11.4 145 68-213 12-161 (844)
49 2z66_A Variable lymphocyte rec 99.7 2E-17 6.7E-22 135.5 7.8 145 68-213 5-188 (306)
50 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 137.8 12.4 134 81-215 64-222 (440)
51 4eco_A Uncharacterized protein 99.7 6.4E-18 2.2E-22 151.8 5.0 137 80-217 205-370 (636)
52 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-16 3.9E-21 144.2 12.7 133 81-213 25-158 (680)
53 4ezg_A Putative uncharacterize 99.7 6.1E-17 2.1E-21 124.7 8.9 128 80-212 65-193 (197)
54 2ft3_A Biglycan; proteoglycan, 99.7 3.3E-16 1.1E-20 129.7 13.8 143 69-215 32-187 (332)
55 2xwt_C Thyrotropin receptor; s 99.7 7.4E-17 2.5E-21 127.7 9.3 134 81-216 31-172 (239)
56 2z62_A TOLL-like receptor 4, v 99.7 7.5E-17 2.6E-21 130.2 9.4 113 80-192 51-164 (276)
57 1xku_A Decorin; proteoglycan, 99.7 2.8E-16 9.4E-21 130.0 12.8 143 68-213 29-184 (330)
58 2o6s_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 120.8 12.8 115 80-194 51-165 (208)
59 2z63_A TOLL-like receptor 4, v 99.7 2.6E-16 8.9E-21 138.7 12.4 134 81-214 28-163 (570)
60 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-16 5.6E-21 141.2 11.0 137 80-216 55-197 (606)
61 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.8E-21 134.4 9.1 134 79-213 62-202 (361)
62 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.3E-21 122.9 8.7 132 80-215 43-174 (197)
63 3oja_A Leucine-rich immune mol 99.7 1.6E-16 5.4E-21 138.6 10.3 141 69-213 108-250 (487)
64 3g39_A Variable lymphocyte rec 99.7 6.4E-16 2.2E-20 116.4 12.1 107 84-193 12-118 (170)
65 2id5_A Lingo-1, leucine rich r 99.7 2.5E-16 8.6E-21 136.4 10.9 134 80-214 55-190 (477)
66 2z80_A TOLL-like receptor 2, v 99.7 1.9E-16 6.4E-21 132.3 9.4 136 80-216 75-214 (353)
67 3zyj_A Leucine-rich repeat-con 99.7 5.4E-16 1.8E-20 133.3 12.3 133 81-215 88-246 (440)
68 4g8a_A TOLL-like receptor 4; l 99.7 4.3E-16 1.5E-20 138.5 11.7 132 81-212 445-579 (635)
69 3zyi_A Leucine-rich repeat-con 99.7 6.2E-16 2.1E-20 133.3 12.3 133 81-215 99-257 (452)
70 3o6n_A APL1; leucine-rich repe 99.7 1E-15 3.6E-20 129.3 13.1 130 81-212 69-198 (390)
71 4b8c_D Glucose-repressible alc 99.7 1E-16 3.5E-21 146.0 7.0 113 97-213 216-329 (727)
72 4ecn_A Leucine-rich repeat pro 99.6 9E-17 3.1E-21 148.6 6.3 136 80-217 447-612 (876)
73 3oja_B Anopheles plasmodium-re 99.6 1.1E-15 3.6E-20 136.3 12.7 130 81-212 75-204 (597)
74 2z7x_B TOLL-like receptor 1, v 99.6 5.9E-16 2E-20 135.4 10.8 131 80-212 323-480 (520)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.3E-16 2.8E-20 135.9 11.8 128 80-212 51-181 (562)
76 2r9u_A Variable lymphocyte rec 99.6 1.8E-15 6E-20 114.5 12.0 106 84-192 15-120 (174)
77 1wwl_A Monocyte differentiatio 99.6 9.9E-17 3.4E-21 132.0 5.3 134 81-215 121-268 (312)
78 2z81_A CD282 antigen, TOLL-lik 99.6 3.7E-16 1.3E-20 137.4 9.3 134 80-213 49-185 (549)
79 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-16 9.7E-21 118.8 7.4 129 80-214 18-154 (176)
80 2z7x_B TOLL-like receptor 1, v 99.6 4.6E-16 1.6E-20 136.1 9.4 127 81-212 21-150 (520)
81 2z63_A TOLL-like receptor 4, v 99.6 5.1E-16 1.8E-20 136.8 9.5 133 81-213 396-531 (570)
82 3o53_A Protein LRIM1, AGAP0063 99.6 9.7E-16 3.3E-20 126.3 10.3 136 74-213 113-250 (317)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.2E-15 7.4E-20 133.2 12.5 131 80-212 352-509 (562)
84 1xku_A Decorin; proteoglycan, 99.6 3.3E-15 1.1E-19 123.5 12.2 82 131-213 194-276 (330)
85 1dce_A Protein (RAB geranylger 99.6 1.3E-15 4.6E-20 135.0 10.5 119 82-205 442-565 (567)
86 3t6q_A CD180 antigen; protein- 99.6 1.2E-15 4E-20 135.7 9.5 136 80-215 56-194 (606)
87 2ft3_A Biglycan; proteoglycan, 99.6 4.9E-15 1.7E-19 122.7 12.2 131 82-213 124-277 (332)
88 1wwl_A Monocyte differentiatio 99.6 9.9E-16 3.4E-20 126.0 7.3 133 81-215 149-289 (312)
89 1ziw_A TOLL-like receptor 3; i 99.6 2E-15 6.9E-20 136.0 9.8 134 80-213 48-184 (680)
90 1h6t_A Internalin B; cell adhe 99.6 9.2E-15 3.2E-19 119.2 12.2 124 81-212 68-212 (291)
91 1h6t_A Internalin B; cell adhe 99.6 6.3E-15 2.2E-19 120.2 11.1 103 81-191 112-214 (291)
92 4fmz_A Internalin; leucine ric 99.6 4.2E-15 1.4E-19 123.5 10.3 127 80-213 220-346 (347)
93 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 3.9E-20 120.8 6.5 127 81-210 55-189 (239)
94 2ell_A Acidic leucine-rich nuc 99.6 2.9E-15 1E-19 112.2 8.2 114 80-196 48-165 (168)
95 1xeu_A Internalin C; cellular 99.6 1E-14 3.6E-19 117.3 11.7 126 80-215 62-187 (263)
96 3oja_A Leucine-rich immune mol 99.6 1.5E-15 5.1E-20 132.4 7.2 132 80-214 57-205 (487)
97 1xeu_A Internalin C; cellular 99.6 9E-15 3.1E-19 117.6 11.2 126 80-215 40-165 (263)
98 4glp_A Monocyte differentiatio 99.6 1.8E-15 6.3E-20 124.2 7.2 131 80-213 144-285 (310)
99 1h6u_A Internalin H; cell adhe 99.6 6E-15 2E-19 121.2 10.2 124 80-212 84-207 (308)
100 1h6u_A Internalin H; cell adhe 99.6 1.5E-14 5.3E-19 118.8 12.3 127 80-215 62-188 (308)
101 4glp_A Monocyte differentiatio 99.6 2.6E-15 9E-20 123.3 7.2 129 80-213 168-307 (310)
102 3g39_A Variable lymphocyte rec 99.6 2.6E-14 9E-19 107.5 11.7 105 106-213 10-115 (170)
103 4b8c_D Glucose-repressible alc 99.6 3.8E-15 1.3E-19 135.7 7.2 112 80-195 223-334 (727)
104 3j0a_A TOLL-like receptor 5; m 99.6 2.5E-14 8.4E-19 132.3 12.8 131 81-215 266-396 (844)
105 2je0_A Acidic leucine-rich nuc 99.5 7.9E-15 2.7E-19 107.7 6.9 111 104-216 16-129 (149)
106 2r9u_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 105.8 12.1 106 107-215 14-120 (174)
107 3cvr_A Invasion plasmid antige 99.5 1.3E-14 4.4E-19 128.7 9.3 124 71-213 49-173 (571)
108 1m9s_A Internalin B; cell inva 99.5 3.1E-14 1.1E-18 127.1 11.7 124 81-213 87-210 (605)
109 2ifg_A High affinity nerve gro 99.5 4.9E-14 1.7E-18 117.2 11.9 102 87-191 14-117 (347)
110 3o53_A Protein LRIM1, AGAP0063 99.5 7.3E-15 2.5E-19 121.1 6.5 132 81-217 99-231 (317)
111 1m9s_A Internalin B; cell inva 99.5 5.6E-14 1.9E-18 125.5 12.2 127 80-215 64-190 (605)
112 1o6v_A Internalin A; bacterial 99.5 4.7E-14 1.6E-18 122.0 10.4 123 83-214 267-389 (466)
113 1o6v_A Internalin A; bacterial 99.5 1.7E-13 6E-18 118.4 11.3 123 82-213 244-366 (466)
114 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 9.8E-19 107.7 5.3 106 81-190 42-153 (176)
115 4ay9_X Follicle-stimulating ho 99.5 1.5E-13 5.1E-18 114.7 9.4 148 68-216 7-170 (350)
116 4fmz_A Internalin; leucine ric 99.5 7.1E-13 2.4E-17 109.9 12.7 126 80-213 65-190 (347)
117 3cvr_A Invasion plasmid antige 99.4 8.4E-13 2.9E-17 117.0 13.5 94 81-190 100-193 (571)
118 1dce_A Protein (RAB geranylger 99.4 2.6E-13 9E-18 120.3 9.8 106 106-216 442-549 (567)
119 3bz5_A Internalin-J, INLJ; leu 99.4 2.1E-12 7E-17 111.7 14.9 122 80-213 105-246 (457)
120 1ds9_A Outer arm dynein; leuci 99.4 2.2E-16 7.4E-21 121.7 -10.4 126 80-212 47-184 (198)
121 1jl5_A Outer protein YOPM; leu 99.4 2.1E-12 7.1E-17 111.6 13.3 120 81-213 131-250 (454)
122 3bz5_A Internalin-J, INLJ; leu 99.4 3.8E-12 1.3E-16 110.1 14.6 96 101-207 166-261 (457)
123 2ast_B S-phase kinase-associat 99.4 7.8E-15 2.7E-19 121.2 -3.2 105 82-187 71-178 (336)
124 2ifg_A High affinity nerve gro 99.4 1.4E-12 4.9E-17 108.3 10.3 104 108-213 11-116 (347)
125 1ds9_A Outer arm dynein; leuci 99.4 5.6E-16 1.9E-20 119.4 -10.4 128 82-214 19-154 (198)
126 2ast_B S-phase kinase-associat 99.4 1.6E-14 5.3E-19 119.4 -2.4 129 82-210 119-257 (336)
127 2ca6_A RAN GTPase-activating p 99.3 2.9E-14 9.8E-19 120.4 -2.8 133 81-213 159-316 (386)
128 1jl5_A Outer protein YOPM; leu 99.3 1.2E-11 4.2E-16 106.7 12.7 120 81-215 111-230 (454)
129 3g06_A SSPH2 (leucine-rich rep 99.3 1.7E-11 5.8E-16 109.8 11.9 56 153-213 241-297 (622)
130 3g06_A SSPH2 (leucine-rich rep 99.3 2.7E-11 9.3E-16 108.4 12.5 94 81-190 61-154 (622)
131 2ca6_A RAN GTPase-activating p 99.3 5.6E-14 1.9E-18 118.6 -4.6 110 105-214 159-288 (386)
132 3goz_A Leucine-rich repeat-con 99.3 2.4E-13 8.1E-18 114.0 -0.9 133 82-214 52-210 (362)
133 4ay9_X Follicle-stimulating ho 99.3 1.6E-11 5.5E-16 102.3 10.2 127 75-209 7-137 (350)
134 3goz_A Leucine-rich repeat-con 99.2 5.8E-13 2E-17 111.6 -0.5 133 81-213 22-180 (362)
135 1z7x_W Ribonuclease inhibitor; 99.2 2.2E-13 7.7E-18 117.0 -7.2 131 82-212 257-410 (461)
136 1z7x_W Ribonuclease inhibitor; 99.1 2.9E-12 9.9E-17 110.1 -3.9 132 80-213 283-440 (461)
137 3un9_A NLR family member X1; l 98.9 1.3E-11 4.6E-16 104.0 -4.6 133 81-213 101-252 (372)
138 3sb4_A Hypothetical leucine ri 98.9 6.9E-09 2.4E-13 85.6 8.9 85 128-215 225-312 (329)
139 3un9_A NLR family member X1; l 98.8 3E-10 1E-14 95.6 -0.6 111 81-191 126-253 (372)
140 3sb4_A Hypothetical leucine ri 98.8 1.3E-08 4.5E-13 83.9 8.0 89 104-195 225-314 (329)
141 3ogk_B Coronatine-insensitive 98.8 1.2E-10 4.2E-15 102.9 -5.2 60 152-211 462-524 (592)
142 3rw6_A Nuclear RNA export fact 98.6 1.9E-08 6.5E-13 80.8 4.3 95 110-206 148-257 (267)
143 3ogk_B Coronatine-insensitive 98.6 4.2E-09 1.5E-13 93.0 -0.1 64 103-166 162-233 (592)
144 1io0_A Tropomodulin; LRR prote 98.6 4.6E-09 1.6E-13 79.8 -0.8 111 80-190 35-164 (185)
145 2p1m_B Transport inhibitor res 98.5 1E-09 3.5E-14 96.9 -6.5 131 81-212 372-518 (594)
146 3rw6_A Nuclear RNA export fact 98.5 5.4E-08 1.8E-12 78.1 3.7 80 102-183 167-257 (267)
147 2p1m_B Transport inhibitor res 98.4 1.1E-08 3.7E-13 90.4 -4.4 127 80-206 104-241 (594)
148 1io0_A Tropomodulin; LRR prote 98.2 5.9E-08 2E-12 73.6 -2.0 115 98-212 29-163 (185)
149 2ra8_A Uncharacterized protein 98.2 2.5E-07 8.6E-12 77.5 0.0 131 80-213 171-320 (362)
150 3e4g_A ATP synthase subunit S, 98.1 5.3E-07 1.8E-11 67.7 1.5 83 82-164 62-150 (176)
151 3e4g_A ATP synthase subunit S, 98.1 8E-07 2.7E-11 66.8 2.5 84 105-188 61-150 (176)
152 4fdw_A Leucine rich hypothetic 98.1 1.6E-05 5.4E-10 67.4 10.0 105 82-190 249-358 (401)
153 2ra8_A Uncharacterized protein 98.0 4.2E-07 1.4E-11 76.1 -1.6 111 80-190 192-320 (362)
154 4fdw_A Leucine rich hypothetic 98.0 3.6E-05 1.2E-09 65.2 10.2 124 82-208 158-308 (401)
155 4gt6_A Cell surface protein; l 97.4 0.00056 1.9E-08 57.4 8.4 86 100-188 283-368 (394)
156 3rfe_A Platelet glycoprotein I 97.3 0.00069 2.4E-08 48.0 6.5 57 108-166 11-68 (130)
157 3rfe_A Platelet glycoprotein I 97.3 0.00068 2.3E-08 48.1 6.3 56 85-142 12-68 (130)
158 4h09_A Hypothetical leucine ri 97.1 0.0016 5.5E-08 54.1 7.8 101 83-186 242-342 (379)
159 4h09_A Hypothetical leucine ri 97.0 0.0036 1.2E-07 51.9 9.7 106 98-207 233-340 (379)
160 4gt6_A Cell surface protein; l 97.0 0.0027 9.3E-08 53.1 8.9 108 99-211 259-368 (394)
161 4fs7_A Uncharacterized protein 96.8 0.0037 1.3E-07 52.3 7.7 83 100-187 271-353 (394)
162 4fs7_A Uncharacterized protein 96.8 0.0063 2.2E-07 50.9 9.0 86 99-187 291-376 (394)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00026 8.8E-09 54.0 0.1 110 80-189 40-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0014 4.8E-08 49.9 2.0 88 101-188 37-137 (197)
165 2lz0_A Uncharacterized protein 62.7 27 0.00092 22.7 6.2 40 98-138 13-52 (100)
166 2lz0_A Uncharacterized protein 62.5 28 0.00095 22.7 6.3 48 115-163 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.2e-28 Score=203.79 Aligned_cols=176 Identities=31% Similarity=0.559 Sum_probs=159.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC--CcceeeCCC---CCEEEEEcCCCCCCc--cCCcccCCCCCCc
Q 027683 36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCT--WFHITCNQD---NRVTRLDLGNSNLSG--RLVPELGKLEHLQ 108 (220)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~--~~gv~c~~~---~~l~~L~L~~n~l~~--~~~~~l~~l~~L~ 108 (220)
.|.++|+++|++||+++.+|. .+.+|... .++|. |.||+|+.. ++|++|+++++++.+ .+|+.+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 477889999999999998876 78899764 57888 999999764 799999999999998 8999999999999
Q ss_pred EEEccC-CcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecC
Q 027683 109 YLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSN 187 (220)
Q Consensus 109 ~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 187 (220)
+|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCC-CCCC-CCCcccccccccc
Q 027683 188 DLCGTIPTS-GPFE-HIPLNKYVSSFCN 213 (220)
Q Consensus 188 ~l~g~~p~~-~~l~-~l~~l~l~~n~~~ 213 (220)
+++|.+|.. +.++ +++.+++.+|...
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 999888865 5666 8889999888765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=5.6e-25 Score=201.54 Aligned_cols=178 Identities=26% Similarity=0.353 Sum_probs=134.0
Q ss_pred hhccCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCEEEEEcCCCCCCcc---CC-----------
Q 027683 33 VAVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGR---LV----------- 98 (220)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~~~gv~c~~~~~l~~L~L~~n~l~~~---~~----------- 98 (220)
+++...++|+++|++||+++.||. .+.+|... .++|+|.||+|+ .++|+.|+++++.+.|. ++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 344456789999999999999888 89999743 689999999998 78999999999998876 33
Q ss_pred ------------cccCCCCCCcEEEccCCcCCCCCcc--ccCCCCCCcEEeCcCCcCCCCCcccc-cCCCCCCEEEccCC
Q 027683 99 ------------PELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVFLRLNDN 163 (220)
Q Consensus 99 ------------~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n 163 (220)
..++.+++|++|++++|.++|.+|. .+..+++|++|++++|.+++..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677888999999999999888887 88888889999998888887777654 67777777777777
Q ss_pred cCCCCCccc---cc----------------------CCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 164 RLTGQIPRE---LV----------------------GISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 164 ~l~~~~p~~---~~----------------------~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
++++..|.. +. .+++|++|++++|++++.+|..+.+++|+.|++.+|...
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC
Confidence 776655543 33 455555556666666555555555666666666665543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.2e-25 Score=200.32 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCCC---cceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCC
Q 027683 39 NSEGDALYALRRSLSDPDNV--------LQSWDPTLVNPCTW---FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL 107 (220)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~c~~---~gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L 107 (220)
..|+.||.+++.++.++... ..+|+.. .++|.| .||+|+..++|+.|+|+++++.|.+|+.++++++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence 36899999999998765322 2379865 689999 99999888999999999999999999999999999
Q ss_pred cEEEccCCcC----------------------------------------------------------------------
Q 027683 108 QYLELYKNNI---------------------------------------------------------------------- 117 (220)
Q Consensus 108 ~~L~L~~n~l---------------------------------------------------------------------- 117 (220)
++|++++|.+
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 9999998843
Q ss_pred --------CCCCccccCCCCCCcEEeCcCCcCCCC-----------------Cccccc--CCCCCCEEEccCCcCCCCCc
Q 027683 118 --------QGTIPVELGNLKSLISLDLYNNNISGK-----------------IPPSLA--KLKSLVFLRLNDNRLTGQIP 170 (220)
Q Consensus 118 --------~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p 170 (220)
++ +|..++++++|++|++++|.+++. +|+.++ ++++|++|++++|++.+.+|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 34 778889999999999999999975 899988 99999999999999999999
Q ss_pred ccccCCCCCcEEEeecCc-CCC-cCCCC-CCC------CCCCcccccccccchhh
Q 027683 171 RELVGISSLKVVDVSSND-LCG-TIPTS-GPF------EHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 171 ~~~~~l~~L~~L~l~~N~-l~g-~~p~~-~~l------~~l~~l~l~~n~~~~l~ 216 (220)
..+.++++|++|++++|+ ++| .+|.. +.+ ++|+.|++.+|....++
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 999999999999999998 887 67653 333 77777777777665444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.5e-25 Score=204.49 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=146.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCCCCCCCC----CCC--CCC------------cceeeCCCCCEEEEEcCCCCCCccCC
Q 027683 37 SGNSEGDALYALRRSLSDPDNVLQSWDPTL----VNP--CTW------------FHITCNQDNRVTRLDLGNSNLSGRLV 98 (220)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~----~~~--c~~------------~gv~c~~~~~l~~L~L~~n~l~~~~~ 98 (220)
...+|+.+|++||+++.+| +|+... .+| |.| .||+|+..++|+.|+|+++++.|.+|
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence 3457999999999999876 776443 345 999 99999888999999999999999999
Q ss_pred cccCCCCCCcEEEc-cCCcCCCC---------------------------------------------------------
Q 027683 99 PELGKLEHLQYLEL-YKNNIQGT--------------------------------------------------------- 120 (220)
Q Consensus 99 ~~l~~l~~L~~L~L-~~n~l~~~--------------------------------------------------------- 120 (220)
+.++++++|++|+| ++|.+.|.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 77754333
Q ss_pred -------------------CccccCCCCCCcEEeCcCCcCCC-----------------CCccccc--CCCCCCEEEccC
Q 027683 121 -------------------IPVELGNLKSLISLDLYNNNISG-----------------KIPPSLA--KLKSLVFLRLND 162 (220)
Q Consensus 121 -------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~ 162 (220)
+|..+.++++|++|++++|.+++ .+|+.++ ++++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 77788999999999999999997 3888887 999999999999
Q ss_pred CcCCCCCcccccCCCCCcEEEeecCc-CCC-cCCCC--------CCCCCCCcccccccccchhh
Q 027683 163 NRLTGQIPRELVGISSLKVVDVSSND-LCG-TIPTS--------GPFEHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~~p~~--------~~l~~l~~l~l~~n~~~~l~ 216 (220)
|++.+.+|..+.++++|++|++++|+ ++| .+|.. ..+++|+.|++++|....++
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 99999999999999999999999998 887 56642 23447777777777666444
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=9.6e-24 Score=175.47 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=137.5
Q ss_pred hccCChhHHHHHHHHHHhC-CCCCCCCCCCC---CCCCCCCCCcceeeC---------CCCCEEEEEcCCCCCCccCCcc
Q 027683 34 AVASGNSEGDALYALRRSL-SDPDNVLQSWD---PTLVNPCTWFHITCN---------QDNRVTRLDLGNSNLSGRLVPE 100 (220)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~~c~~~gv~c~---------~~~~l~~L~L~~n~l~~~~~~~ 100 (220)
......+|+.+|++||..+ .++.+....|. ....+.|.|.|+.|. ...++++|++++|+++ .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 4456678999999999987 46766777884 344678999999995 2468899999999988 67777
Q ss_pred cCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccC-----
Q 027683 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVG----- 175 (220)
Q Consensus 101 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----- 175 (220)
+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 888888889999888888 77888888888888888888888 77888888888888888887777777765543
Q ss_pred ----CCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhh
Q 027683 176 ----ISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 176 ----l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~ 216 (220)
+++|++|++++|+++ .+|.. +.+++|+.|++.+|...-++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCc
Confidence 777777777777776 66643 56667777777776655443
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=3.8e-21 Score=151.94 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=129.4
Q ss_pred CCCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeC
Q 027683 67 VNPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (220)
Q Consensus 67 ~~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 136 (220)
.+.|+|.+|.|.. ..++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4789999999964 247899999999999888888999999999999999998766677899999999999
Q ss_pred cCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccc
Q 027683 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+. ...+++++.+++.+|+..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999766677899999999999999999 7888899999999999999999944433 377899999999999854
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=9.4e-21 Score=148.87 Aligned_cols=145 Identities=21% Similarity=0.271 Sum_probs=128.3
Q ss_pred CCCCCcceeeCCC----------CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCc
Q 027683 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (220)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 137 (220)
+.|.|..+.|... .++++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4577888888532 379999999999998777789999999999999999998889999999999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCccccccccc
Q 027683 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~ 212 (220)
+|.++...+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+. ...+++++.+++.+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999955555678999999999999999988889999999999999999999965554 37789999999999985
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.4e-20 Score=144.87 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=126.4
Q ss_pred CCCCCcceeeCCC----------CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCc
Q 027683 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (220)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 137 (220)
+.|.|.++.|... .++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 4688999999642 369999999999997777778999999999999999997767778999999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccc
Q 027683 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+. ...+++++.+++.+|+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999966666689999999999999999977777788999999999999999955444 377899999999998754
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=146.52 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=128.4
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCC-cccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeC
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLV-PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 136 (220)
+.|.|..+.|.. ...+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 457787777753 2357899999999997755 44889999999999999999877888999999999999
Q ss_pred cCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.. ..+++++.+++.+|+..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999877778999999999999999999888999999999999999999999776754 78899999999999864
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=4e-19 Score=143.41 Aligned_cols=132 Identities=21% Similarity=0.231 Sum_probs=76.0
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
.+++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46677777777775555566667777777777777664444445666666666666666664444445556666666666
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
+|++++..+..+..+++|++|++++|++++..+. ...+++|+.|++.+|...
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 6666554444455555555555555555522221 134455555555554433
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=9.3e-19 Score=139.81 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 56777777777777666666777777777777777777666666777777777777777777555555677778888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
++|++++..+..+..+++|++|++++|++++..+. ...+++++.+++.+|+..
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 88877765555677777888888888888744442 266777777887777643
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.9e-18 Score=137.93 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=122.2
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
..++.|++++|++++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46899999999999888888999999999999999999888888999999999999999999777778899999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccchhhh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~~l~~ 217 (220)
++|++++..+..+..+++|++|++++|++++..+. .+.+++|+.|++++|....+..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99999977677788999999999999999955443 4788999999999998775543
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=4.9e-19 Score=157.48 Aligned_cols=135 Identities=20% Similarity=0.132 Sum_probs=120.3
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
..+++|+|++|+|++..+..|.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999877788999999999999999999877888999999999999999999666678999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCc-CCCC-CCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGT-IPTS-GPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-~p~~-~~l~~l~~l~l~~n~~~~l 215 (220)
++|++++..+..|.++++|++|++++|++++. +|.. +.+++|+.|++.+|...-+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999977777899999999999999999843 4544 6789999999999877644
No 14
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=7.8e-19 Score=135.02 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=93.7
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCc-ccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeC
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 136 (220)
..|.|..+.|.. ..++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 346676666642 12677888888888755543 3777888888888888888777777888888888888
Q ss_pred cCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcC
Q 027683 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTI 193 (220)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~ 193 (220)
++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 888888666666777888888888888888777777777888888888888777554
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=4.1e-18 Score=137.70 Aligned_cols=134 Identities=20% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 45788899999988877766788889999999999999877777788889999999999999866666678889999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
+++|++++..+..+..+++|++|++++|++++..|.. +.+++|+.+++.+|+..
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 9999998777777788899999999999998665543 77888889998888753
No 16
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=2.4e-18 Score=130.27 Aligned_cols=127 Identities=26% Similarity=0.282 Sum_probs=92.9
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCc
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 137 (220)
+.|+|.++.|.. ..++++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 457788888753 1367788888888876555567778888888888888876656667778888888888
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCC
Q 027683 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194 (220)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 194 (220)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888875555566777888888888888875555556677888888888887776544
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=4e-19 Score=162.75 Aligned_cols=126 Identities=32% Similarity=0.610 Sum_probs=119.8
Q ss_pred EEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcC
Q 027683 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRL 165 (220)
Q Consensus 86 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (220)
+++..+.+.|.+|..+..+++|++|++++|+++|.+|..++.+++|+.|++++|.++|.+|..++.+++|++||+++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 34556777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccc
Q 027683 166 TGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSF 211 (220)
Q Consensus 166 ~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~ 211 (220)
+|.+|..+..+++|++|++++|+++|.+|..+.+..++...+.||+
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 9999999999999999999999999999999899999999999987
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=3.2e-18 Score=131.54 Aligned_cols=127 Identities=20% Similarity=0.321 Sum_probs=113.5
Q ss_pred EEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCcc-ccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccC
Q 027683 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (220)
Q Consensus 84 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (220)
+.+++++++++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68999999997 66766543 899999999999976654 489999999999999999988899999999999999999
Q ss_pred CcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 163 NRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
|++++..+..+..+++|++|++++|++++..|.. ..+++++.+++.+|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999888888999999999999999999887765 78899999999999765
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=4.6e-19 Score=146.16 Aligned_cols=128 Identities=27% Similarity=0.510 Sum_probs=93.1
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
.+++|++++|.+++.+|..+..+. |++|++++|.+++..|..+..+++|++|++++|.+++..|. +..+++|++|+++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence 344444444444444444444444 55555555555555666677777777777777777755444 6778888888888
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSF 211 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~ 211 (220)
+|++++.+|..+..+++|++|++++|+++|.+|..+.+++++.+++.+|+
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 88888888888888999999999999999888888888888889888887
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=2.6e-18 Score=151.07 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=113.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999888888999999999999999999888888999999999999999999777777999999999999
Q ss_pred cCCcCCC-CCcccccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCcccccccccc
Q 027683 161 NDNRLTG-QIPRELVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~~ 213 (220)
++|++++ ..|..+.++++|++|++++|++.+.+|. .+.+++|+.|++.+|...
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999986 3567788899999999999986656663 367788888888877654
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.7e-18 Score=143.39 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=125.1
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccC-CCCCCcEEEccCCcCCCCCccccCCCCCCcEEeC
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 136 (220)
+.|.+..+.|.. ...++.|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|++
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 346666677743 23588999999999987777787 8999999999999999877788999999999999
Q ss_pred cCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-----CCCCCCCcccccccc
Q 027683 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-----GPFEHIPLNKYVSSF 211 (220)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-----~~l~~l~~l~l~~n~ 211 (220)
++|++++..+..+..+++|++|++++|++++..|..|..+++|++|++++|+++ .+|.. ..+++|+.|++++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence 999999766778999999999999999999888889999999999999999998 45543 357899999999988
Q ss_pred cchhh
Q 027683 212 CNLLL 216 (220)
Q Consensus 212 ~~~l~ 216 (220)
...++
T Consensus 175 l~~l~ 179 (361)
T 2xot_A 175 LKKLP 179 (361)
T ss_dssp CCCCC
T ss_pred CCccC
Confidence 77554
No 22
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=1.9e-18 Score=129.75 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=117.6
Q ss_pred CCEEEEEcCCCCCC-ccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57899999999998 77888889999999999999999965 6789999999999999999977888888899999999
Q ss_pred ccCCcCCCCC-cccccCCCCCcEEEeecCcCCCcCC----CCCCCCCCCcccccccccchhhh
Q 027683 160 LNDNRLTGQI-PRELVGISSLKVVDVSSNDLCGTIP----TSGPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 160 L~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p----~~~~l~~l~~l~l~~n~~~~l~~ 217 (220)
+++|++++.. +..+..+++|++|++++|++++..+ ....+++|+.+++.+|..+.++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999998542 2788999999999999999995444 23788999999999998876653
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.4e-17 Score=135.19 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCc-CCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
++++|++++|.+++..+..+.++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 45555555555554444455555555555555554 44333445555555555555555555444455555555555555
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
++|++++..+..+..+++|++|++++|++++..+. ...+++|+.+++.+|...
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 55555544444455555555555555555532222 244555555555555443
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=7.4e-18 Score=149.95 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=114.8
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57899999999998877778899999999999999998777888899999999999999998777888999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCC-cCCCC-CCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCG-TIPTS-GPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~-~~l~~l~~l~l~~n~~~~l 215 (220)
++|++++..+..+.++++|++|++++|++.+ .+|.. +.+++|+.|++++|...-+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9999987666778889999999999998875 56654 7788888888888866543
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.9e-17 Score=132.47 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 34566666666665444444556666666666666666555555666666666666666666444444666666777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~ 212 (220)
++|++++..+..+..+++|++|++++|++++..+. ...+++++.+++.+|+.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 77766655555566667777777777777633222 24566677777777763
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=2.6e-17 Score=132.95 Aligned_cols=136 Identities=22% Similarity=0.226 Sum_probs=119.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 46799999999999863 4789999999999999999987777789999999999999999977777789999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhhh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~~ 217 (220)
+++|++++..+..+..+++|++|++++|++++..+.. +.+++|+.+++.+|...-+..
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 9999999777777889999999999999999655543 788999999999998775543
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=3.3e-17 Score=133.74 Aligned_cols=130 Identities=25% Similarity=0.202 Sum_probs=88.9
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 45666677777666 45556667777777777777777655666777777777777777777555555667777777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFC 212 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~ 212 (220)
++|++++..+..+..+++|++|++++|+++ .+|.. ....+++.+.+.+|+.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 777777544445566777777777777777 55544 4556677777777754
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=6.1e-18 Score=145.50 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=119.4
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCC-ccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++++|++++|.+++..+..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999888889999999999999999997555 56799999999999999999988899999999999999
Q ss_pred ccCCcCCCCCccc--ccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCcccccccccchh
Q 027683 160 LNDNRLTGQIPRE--LVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~~~l 215 (220)
+++|++++..|.. +..+++|++|++++|++++..|. ...+++|+.+++.+|....+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9999998755554 88999999999999999977675 36789999999999876543
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.4e-17 Score=143.63 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 47899999999999888888999999999999999999877888999999999999999998666666888899999999
Q ss_pred cCCcCCCCCcccc-------------------------cCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPREL-------------------------VGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~~-------------------------~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
++|++++..+..+ ..+++|++|++++|+++ .+|....+++|+.|++++|...-+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccEEECcCCcCccc
Confidence 9988875444333 44555666666666665 445555666677777777665533
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.3e-17 Score=143.52 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=121.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57899999999999888889999999999999999999888889999999999999999999877888999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++|++++..|..+..+++|++|++++|++++..+.. ..+++|+.+++.+|+..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 999999888999999999999999999999543333 68899999999999865
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=138.66 Aligned_cols=133 Identities=23% Similarity=0.194 Sum_probs=101.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|++++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 37888999999888766667888889999999999888777777888888999999988888544445788888888888
Q ss_pred cCCcCCCCCc-ccccCCCCCcEEEeecCc-CCCcCCC-CCCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIP-RELVGISSLKVVDVSSND-LCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p-~~~~~l~~L~~L~l~~N~-l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
++|++++..+ ..+..+++|++|++++|+ +.+..|. .+.+++++.+++.+|...
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 8888884333 367788888888888884 5433332 256677777777776554
No 32
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=126.61 Aligned_cols=121 Identities=27% Similarity=0.353 Sum_probs=58.6
Q ss_pred EEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcC
Q 027683 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRL 165 (220)
Q Consensus 86 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (220)
+++++++++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 444444444 3333222 34555555555554 3444455555555555555555544444455555555555555555
Q ss_pred CCCCcccccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCcccccccc
Q 027683 166 TGQIPRELVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSF 211 (220)
Q Consensus 166 ~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~ 211 (220)
++..|..|..+++|++|++++|+++ .+|. ...+++++.+++.+|+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence 5444444555555555555555555 2222 1344455555555554
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.1e-17 Score=138.95 Aligned_cols=129 Identities=23% Similarity=0.276 Sum_probs=91.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCC---------CCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccC
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGK---------LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 151 (220)
.++++|++++|++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence 56777788777777666665543 777777777777777 56666777777777777777777 45556777
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccc
Q 027683 152 LKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSF 211 (220)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~ 211 (220)
+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|.. +.+++|+.|++++|+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 777777777777777777777777777777777777777677654 666777777777654
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=4.1e-17 Score=132.38 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCC-CCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 345666666664 4444445555556666666666665554455555555566666655555543334455555555555
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
+++|++++..+..+..+++|++|++++|++++..|.. +.+++|+.+++.+|...
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 5555555433334555555555555555555443332 44455555555554433
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=2.2e-17 Score=146.84 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=122.2
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
..+++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47999999999999888889999999999999999999888999999999999999999999888899999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCC-cCCCCCCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCG-TIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
++|++++..|..+..+++|++|++++|++.+ .+|....+++|+.+++.+|...-+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 9999997667889999999999999999996 346665689999999999877644
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=6.5e-17 Score=124.42 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=108.8
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCc
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 137 (220)
+.|.+..+.|.. ..++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 8 C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 345666677743 247999999999998 677889999999999999999998888889999999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCC
Q 027683 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCG 191 (220)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 191 (220)
+|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999998777889999999999999999996666678899999999999999874
No 37
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=3.2e-18 Score=125.95 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCCC-ccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56899999999998 78888889999999999999999965 6789999999999999999977888888899999999
Q ss_pred ccCCcCCCC-CcccccCCCCCcEEEeecCcCCCcCC----CCCCCCCCCccccc
Q 027683 160 LNDNRLTGQ-IPRELVGISSLKVVDVSSNDLCGTIP----TSGPFEHIPLNKYV 208 (220)
Q Consensus 160 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p----~~~~l~~l~~l~l~ 208 (220)
+++|++++. .+..+..+++|++|++++|++++..+ ..+.+++|+.++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999963 34788999999999999999985544 13667888877764
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2e-17 Score=135.46 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCC-CCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
.++++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 467788888888877777778888888888888888875 4677788888899999999888877778888888999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCC-CCCCcccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPF-EHIPLNKYVSSFCN 213 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l-~~l~~l~l~~n~~~ 213 (220)
+++|++++..+..+..+++|++|++++|++++..|.. ..+ ++++.+++.+|+..
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 9999988766667888889999999999988777654 555 47888888888764
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.4e-17 Score=133.12 Aligned_cols=132 Identities=20% Similarity=0.146 Sum_probs=85.8
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
++++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46677777777765555566667777777777777765555566667777777777777765555666666777777777
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCC-cCCCC-CCCCCCCcccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCG-TIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
+|++.+..+..+..+++|++|++++|++.+ .+|.. +.+++|+.+++++|...
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 777665555456666677777777776664 23433 55666666666666544
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=128.80 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=106.6
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 46899999999999988777899999999999999999988888899999999999999999988899999999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcC
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTI 193 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~ 193 (220)
+++|++++..|..+..+++|++|++++|.+.+..
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999999888999999999999999999987554
No 41
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=8.3e-17 Score=126.24 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=119.4
Q ss_pred CCCCcceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCccc
Q 027683 69 PCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPS 148 (220)
Q Consensus 69 ~c~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 148 (220)
.|.. +..|.. +.+++++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..
T Consensus 4 ~CP~-~C~C~~----~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 4 HCPA-ACTCSN----NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CSCT-TSEEET----TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCC-CCEECC----CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 4542 456643 47899999998 5666554 68999999999999777778999999999999999999888999
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhhh
Q 027683 149 LAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 149 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~~ 217 (220)
|.++++|++|++++|++++..+..|..+++|++|++++|++++..|.. ..+++|+.|++.+|....+..
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 999999999999999999666666789999999999999999766654 788999999999998876543
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=9.2e-17 Score=131.11 Aligned_cols=134 Identities=25% Similarity=0.293 Sum_probs=99.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+ ...+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 55 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 456666666666664322 256677777777777776 56667778888888888888888666677888888888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC--CCCCCCCcccccccccchhhhc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS--GPFEHIPLNKYVSSFCNLLLAS 218 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~--~~l~~l~~l~l~~n~~~~l~~~ 218 (220)
++|++++..+..+..+++|+.|++++|+++ .+|.. ..+++|+.|++.+|....++..
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 888888666666778888888888888888 55542 5678888888888877766543
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.6e-17 Score=146.72 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=64.0
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
+++.++++++.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34455555555543333334445555555555555554444455555555555555555554444444555555555555
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~ 212 (220)
+|.+++..+..|..+++|++|++++|.+++..|. .+.+++|+.|++.+|..
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 5555533333334555555555555555543332 24445555555555443
No 44
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.8e-16 Score=124.95 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=118.1
Q ss_pred CcceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccC
Q 027683 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151 (220)
Q Consensus 72 ~~gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 151 (220)
+..-.|.. +.++.+++++. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|+++...+..+..
T Consensus 14 ~~~~~Cs~----~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 14 PSQCSCSG----TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp CTTCEEET----TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEeC----CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence 44556743 46899999988 5665554 89999999999999888999999999999999999998555567899
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhhh
Q 027683 152 LKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~~ 217 (220)
+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.. ..+++|+.|++++|....+..
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 999999999999999777777889999999999999999 77765 788999999999998776553
No 45
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.2e-16 Score=119.42 Aligned_cols=127 Identities=19% Similarity=0.184 Sum_probs=108.7
Q ss_pred EEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCC
Q 027683 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (220)
Q Consensus 84 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (220)
+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 57899999998 445443 378999999999999777777899999999999999999666667899999999999999
Q ss_pred cCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 164 RLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 164 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++++..+..+..+++|++|++++|++++..+.. ..+++++.+++.+|+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999777777889999999999999999443333 67899999999999865
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=2.8e-17 Score=139.00 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=62.8
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
+++.++++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 44555555555543322234445555555555555554444445555555555555555554444445555555555555
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC-CCCCCCCCccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~~l~~l~l~~n~~ 212 (220)
+|+++...+..+..+++|++|++++|++.+..|. .+.+++|+.|++.+|..
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 5555522222234455555555555555433332 14444555555554443
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=6.3e-17 Score=140.18 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=100.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 36778888888888777777888888888888888888777777888888888888888887544455777888888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccch
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~ 214 (220)
++|++.+..|..+..+++|++|++++|.+.+..|.. ..+++|+.|++.+|...-
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 888887766777777777888888777777554433 566677777777665543
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=150.60 Aligned_cols=145 Identities=23% Similarity=0.205 Sum_probs=123.2
Q ss_pred CCCCCcceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCC-ccccCCCCCCcEEeCcCCcCCCCCc
Q 027683 68 NPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGKIP 146 (220)
Q Consensus 68 ~~c~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p 146 (220)
..|.+..|.+ -..++++|++++|.+++..+..|.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|
T Consensus 12 s~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 12 RFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp SCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred cCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 3456777777 5678999999999999888889999999999999999665555 7789999999999999999998889
Q ss_pred ccccCCCCCCEEEccCCcCCCCCccc--ccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCcccccccccc
Q 027683 147 PSLAKLKSLVFLRLNDNRLTGQIPRE--LVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~~ 213 (220)
..+.++++|++|++++|++++..|.. +.++++|++|++++|++++..+. .+.+++|+.|++.+|...
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99999999999999999998766655 88999999999999999866553 378889999999888764
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2e-17 Score=135.48 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=87.0
Q ss_pred CCCCCcceeeCCC----------CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCC--CccccCCCCCCcEEe
Q 027683 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT--IPVELGNLKSLISLD 135 (220)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ 135 (220)
+.|.|.++.|... .++++|++++|+++...+..|.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4578888888642 3789999999999855445578899999999999888732 133444455555555
Q ss_pred CcCCcCCCCCccc-------------------------ccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCC
Q 027683 136 LYNNNISGKIPPS-------------------------LAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 136 Ls~n~l~~~~p~~-------------------------~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
+++|.++ .+|.. +..+++|++|++++|++.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 5555544 33333 444555555555555555444444555555555555555555
Q ss_pred C-cCCCC-CCCCCCCcccccccccc
Q 027683 191 G-TIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 191 g-~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
+ .+|.. ..+++|+.|++++|...
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cccchhHHhhCcCCCEEECCCCCcC
Confidence 3 23332 44555555555555443
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=137.76 Aligned_cols=134 Identities=20% Similarity=0.288 Sum_probs=92.7
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
..++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45778888888888777777888888888888888887666677778888888888888877555556777777777777
Q ss_pred cCCcCCCCCccc-------------------------ccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPRE-------------------------LVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~-------------------------~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
++|++++..+.. +.++++|++|++++|+++ .+|....+++|+.|++++|....+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCcc
Confidence 777776443333 444555556666666665 455555666666666666655433
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=6.4e-18 Score=151.83 Aligned_cols=137 Identities=20% Similarity=0.291 Sum_probs=123.4
Q ss_pred CCCEEEEEcCCCCCCcc-----------------CCcccC--CCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCc
Q 027683 80 DNRVTRLDLGNSNLSGR-----------------LVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 140 (220)
..++++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46899999999999985 899998 99999999999999999999999999999999999998
Q ss_pred -CCC-CCcccccCC------CCCCEEEccCCcCCCCCcc--cccCCCCCcEEEeecCcCCCcCCCCCCCCCCCccccccc
Q 027683 141 -ISG-KIPPSLAKL------KSLVFLRLNDNRLTGQIPR--ELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSS 210 (220)
Q Consensus 141 -l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n 210 (220)
+++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|++|++++|+++|.+|..+.+++|+.|++.+|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 998 789888776 99999999999999 8888 899999999999999999999996577888888888888
Q ss_pred ccchhhh
Q 027683 211 FCNLLLA 217 (220)
Q Consensus 211 ~~~~l~~ 217 (220)
....++.
T Consensus 364 ~l~~lp~ 370 (636)
T 4eco_A 364 QITEIPA 370 (636)
T ss_dssp EEEECCT
T ss_pred ccccccH
Confidence 7665543
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=1.1e-16 Score=144.20 Aligned_cols=133 Identities=21% Similarity=0.182 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888888888888776667888888888888888888777888888888888888888888544446888888888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++|++++..|..+.++++|++|++++|++++..|.. +.+++|+.+++.+|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 888888666677888888888888888888666553 66778888888777554
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.1e-17 Score=124.72 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=103.7
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.++. ++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 65 l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 3578888888886652 34688889999999999998876778888899999999999999877788888899999999
Q ss_pred ccCCc-CCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCccccccccc
Q 027683 160 LNDNR-LTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 160 L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~ 212 (220)
+++|+ ++ .+| .+..+++|++|++++|+++ .++....+++|+.+++.+|..
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCTTGGGCSSCCEEEECBC--
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChHHhccCCCCCEEEeeCccc
Confidence 99998 55 555 5788889999999999988 455557788888888888875
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=3.3e-16 Score=129.71 Aligned_cols=143 Identities=24% Similarity=0.367 Sum_probs=114.4
Q ss_pred CCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcC
Q 027683 69 PCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138 (220)
Q Consensus 69 ~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 138 (220)
.|.+..+.|.. ..++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 46788888853 24789999999999987788899999999999999999988899999999999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCC--cCCCC-CCCCCCCcccccccccchh
Q 027683 139 NNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCG--TIPTS-GPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 139 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g--~~p~~-~~l~~l~~l~l~~n~~~~l 215 (220)
|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++. ..|.. ..+ +++.+++.+|....+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 9998 6676554 789999999999986666678889999999999998862 33332 333 555666655554433
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=7.4e-17 Score=127.67 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCc-CCCCCccccCCCCCCcEEeCcC-CcCCCCCcccccCCCCCCEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSLVFL 158 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L 158 (220)
.++++|++++|++++..+..|.++++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999997777788899999999999997 8766666788899999999998 89986666778889999999
Q ss_pred EccCCcCCCCCcccccCCCCCc---EEEeecC-cCCCcCCC-CCCCCCCC-cccccccccchhh
Q 027683 159 RLNDNRLTGQIPRELVGISSLK---VVDVSSN-DLCGTIPT-SGPFEHIP-LNKYVSSFCNLLL 216 (220)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~g~~p~-~~~l~~l~-~l~l~~n~~~~l~ 216 (220)
++++|++++ +|. +..+++|+ +|++++| ++++..+. ...+++++ .+++.+|....++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 999998885 665 77777777 8888888 77733332 36677777 8888777666443
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=7.5e-17 Score=130.23 Aligned_cols=113 Identities=24% Similarity=0.245 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 35677777777777766666677777777777777777766666677777777777777777755555677777777777
Q ss_pred ccCCcCCCC-CcccccCCCCCcEEEeecCcCCCc
Q 027683 160 LNDNRLTGQ-IPRELVGISSLKVVDVSSNDLCGT 192 (220)
Q Consensus 160 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~ 192 (220)
+++|++++. +|..+..+++|++|++++|++++.
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 777777652 466777777777777777777643
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=2.8e-16 Score=130.02 Aligned_cols=143 Identities=21% Similarity=0.313 Sum_probs=101.1
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCc
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 137 (220)
+.|.+..+.|.. ...++.|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 346777777753 2478999999999998777789999999999999999998878899999999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCC--cCCCC-CCCCCCCcccccccccc
Q 027683 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCG--TIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g--~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
+|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+.. ..+++|+.+++.+|...
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988 5565443 566666666666665555555566666666666665542 22221 34445555555544443
No 58
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.2e-16 Score=120.77 Aligned_cols=115 Identities=27% Similarity=0.267 Sum_probs=101.6
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 46799999999999977666789999999999999999977777789999999999999999976666789999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCC
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 194 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 194 (220)
+++|++++..+..+..+++|++|++++|.+.+..|
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999997666678899999999999998876543
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=138.72 Aligned_cols=134 Identities=20% Similarity=0.131 Sum_probs=102.5
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46788888888888776777888888888888888888766777888888888888888887666677888888888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCC-cCCCC-CCCCCCCcccccccccch
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCG-TIPTS-GPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~-~~l~~l~~l~l~~n~~~~ 214 (220)
++|++++..+..+..+++|++|++++|.+.+ .+|.. +.+++|+.|++.+|...-
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 8888875544467788888888888888775 35653 667778888887776543
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=1.7e-16 Score=141.25 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=117.1
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 46899999999999988888899999999999999999988899999999999999999999977768899999999999
Q ss_pred ccCCcCCC-CCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCC----cccccccccchhh
Q 027683 160 LNDNRLTG-QIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIP----LNKYVSSFCNLLL 216 (220)
Q Consensus 160 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~----~l~l~~n~~~~l~ 216 (220)
+++|++++ .+|..+.++++|++|++++|++++..|.. +.+.+++ .+++.+|....+.
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeC
Confidence 99999986 57999999999999999999999765543 3344443 5677776655443
No 61
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=134.36 Aligned_cols=134 Identities=20% Similarity=0.197 Sum_probs=113.1
Q ss_pred CCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEE
Q 027683 79 QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (220)
Q Consensus 79 ~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 158 (220)
...++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 34689999999999998877889999999999999999997777789999999999999999998778899999999999
Q ss_pred EccCCcCCCCCcccc---cCCCCCcEEEeecCcCCCcCCCC--CCCCC--CCcccccccccc
Q 027683 159 RLNDNRLTGQIPREL---VGISSLKVVDVSSNDLCGTIPTS--GPFEH--IPLNKYVSSFCN 213 (220)
Q Consensus 159 ~L~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~g~~p~~--~~l~~--l~~l~l~~n~~~ 213 (220)
++++|++++..+..+ ..+++|++|++++|+++ .+|.. ..++. ++.+++.+|+..
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 999999995444444 56899999999999998 55532 34444 367889998754
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.3e-16 Score=122.91 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.++ .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 357899999999999 445 6899999999999999776 344789999999999999999987888899999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
+++|++++..|..+..+++|++|++++|++.+.+|....+++|+.+++.+|...-+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh
Confidence 99999998788899999999999999998334777668899999999999877644
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.6e-16 Score=138.61 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=119.3
Q ss_pred CCCCcceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccC-CCCCCcEEeCcCCcCCCCCcc
Q 027683 69 PCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNNISGKIPP 147 (220)
Q Consensus 69 ~c~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~ 147 (220)
.|.+.++.+....+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |.
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~ 186 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence 3455666676667899999999999988888899999999999999999988887776 789999999999999855 33
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 148 SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
...+++|++|++++|++++. |..+..+++|+.|++++|.+++ +|.. +.+++++.+++.+|+..
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred -cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 44689999999999999964 4458899999999999999995 5654 77899999999999876
No 64
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=6.4e-16 Score=116.45 Aligned_cols=107 Identities=27% Similarity=0.276 Sum_probs=93.6
Q ss_pred EEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCC
Q 027683 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (220)
Q Consensus 84 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (220)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 47888999988 4666553 88999999999999888889999999999999999999666667899999999999999
Q ss_pred cCCCCCcccccCCCCCcEEEeecCcCCCcC
Q 027683 164 RLTGQIPRELVGISSLKVVDVSSNDLCGTI 193 (220)
Q Consensus 164 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~ 193 (220)
++++..+..+..+++|++|++++|++.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999776677899999999999999998554
No 65
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=136.41 Aligned_cols=134 Identities=22% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 35788888888888877777888888888888888888865556678888888888888888877777778888888888
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCcccccccccch
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~~~ 214 (220)
+++|++++..+..+..+++|++|++++|++++ +|. ...+++|+.|++.+|..+.
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcE
Confidence 88888877667777777788888888777773 332 2556666666666665543
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=132.29 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=117.4
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcc--cccCCCCCCE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVF 157 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~ 157 (220)
..++++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 468999999999999887888999999999999999999665656899999999999999999 4554 7899999999
Q ss_pred EEccCCc-CCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccchhh
Q 027683 158 LRLNDNR-LTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 158 L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~l~ 216 (220)
|++++|+ +.+..+..+..+++|++|++++|++.+..|.. +.+++++.+++.+|....+.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 9999994 66666778899999999999999999776754 77888888888888765544
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=133.30 Aligned_cols=133 Identities=24% Similarity=0.292 Sum_probs=98.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCc--------------
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-------------- 146 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-------------- 146 (220)
.++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.++...+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 467777777777776666667777777777777777775555566677777777777766653222
Q ss_pred -----------ccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccch
Q 027683 147 -----------PSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 147 -----------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~ 214 (220)
..+.++++|++|++++|+++ .+| .+..+++|++|++++|++++..|.. ..+++|+.|++.+|....
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 24666788888888888888 555 4788999999999999999766654 788999999999987765
Q ss_pred h
Q 027683 215 L 215 (220)
Q Consensus 215 l 215 (220)
+
T Consensus 246 ~ 246 (440)
T 3zyj_A 246 I 246 (440)
T ss_dssp E
T ss_pred E
Confidence 4
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=4.3e-16 Score=138.48 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=117.2
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCC-CCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ-GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++.++++.|.+.+..+..+..++.+++|++++|.+. +..|..|..+++|++|++++|++++..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 46788899999999888888999999999999999854 45688899999999999999999988889999999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCC-CCCCccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPF-EHIPLNKYVSSFC 212 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l-~~l~~l~l~~n~~ 212 (220)
|++|++++..|..+..+++|++|++++|++++..|.. ..+ ++|+.+++.+||.
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 9999999888888999999999999999999777764 455 6799999999975
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=6.2e-16 Score=133.33 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcc-------------
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP------------- 147 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~------------- 147 (220)
.++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.++...+.
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 5788888888888877777788888888888888888866666678888888888888877633222
Q ss_pred ------------cccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccch
Q 027683 148 ------------SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 148 ------------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~~ 214 (220)
.+..+++|++|++++|++++ +| .+..+++|++|++++|++++..|.. ..+++|+.|++.+|....
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 35567788888888888884 44 4788999999999999999776654 788999999999987765
Q ss_pred h
Q 027683 215 L 215 (220)
Q Consensus 215 l 215 (220)
+
T Consensus 257 ~ 257 (452)
T 3zyi_A 257 I 257 (452)
T ss_dssp E
T ss_pred E
Confidence 4
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=1e-15 Score=129.32 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=110.0
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 57999999999999877778999999999999999999888888999999999999999999443444689999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~ 212 (220)
++|++++..|..+..+++|++|++++|++++. + .+.+++++.+++.+|..
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C-GGGCTTCSEEECCSSCC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCcc-c-cccccccceeecccccc
Confidence 99999988788899999999999999999843 3 24456666655555543
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1e-16 Score=146.00 Aligned_cols=113 Identities=23% Similarity=0.243 Sum_probs=98.3
Q ss_pred CCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCC
Q 027683 97 LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI 176 (220)
Q Consensus 97 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 176 (220)
.+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3566888999999999999998 67777779999999999999999 88999999999999999999999 789999999
Q ss_pred CCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 177 SSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 177 ~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++|++|++++|.++ .+|.. +.+++|+.|++++|...
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 99999999999997 77864 88899999999999887
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=9e-17 Score=148.59 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=116.0
Q ss_pred CCCEEEEEcCCCCCCc-----------------cCCcccC--CCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCc
Q 027683 80 DNRVTRLDLGNSNLSG-----------------RLVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 140 (220)
..++++|+|++|.+++ .+|+.++ ++++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4689999999999998 3888887 99999999999999999999999999999999999998
Q ss_pred -CCC-CCcccccCCC-------CCCEEEccCCcCCCCCcc--cccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccc
Q 027683 141 -ISG-KIPPSLAKLK-------SLVFLRLNDNRLTGQIPR--ELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVS 209 (220)
Q Consensus 141 -l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~ 209 (220)
+++ .+|..++.++ +|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|..+.+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence 887 6777665544 8999999999998 7887 8888889999999999888 888667888888888888
Q ss_pred cccchhhh
Q 027683 210 SFCNLLLA 217 (220)
Q Consensus 210 n~~~~l~~ 217 (220)
|....++.
T Consensus 605 N~l~~lp~ 612 (876)
T 4ecn_A 605 NQIEEIPE 612 (876)
T ss_dssp SCCSCCCT
T ss_pred CccccchH
Confidence 87765543
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.1e-15 Score=136.34 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=112.9
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 57999999999999888889999999999999999999888888999999999999999999555555799999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~ 212 (220)
++|.+++..|..+..+++|++|++++|.+++. + .+.++++..+++.+|..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C-GGGCTTCSEEECCSSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C-hhhhhhhhhhhcccCcc
Confidence 99999988888899999999999999999853 3 24566666666655543
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=135.39 Aligned_cols=131 Identities=24% Similarity=0.320 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCC--CCccccCCCCCCcEEeCcCCcCCCCCccc-ccCCC---
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLDLYNNNISGKIPPS-LAKLK--- 153 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~--- 153 (220)
..++++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4567777777777776666667777777777777777764 34455666677777777777766534432 44444
Q ss_pred -------------------CCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCccccccccc
Q 027683 154 -------------------SLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 154 -------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~ 212 (220)
+|++|++++|+++ .+|..+..+++|++|++++|+++ .+|. ...+++++.+++.+|+.
T Consensus 403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 5555555555555 45555556667777777777776 4554 25566667777777664
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=8.3e-16 Score=135.93 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=111.9
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 468999999999999887789999999999999999999888899999999999999999999 67766 899999999
Q ss_pred ccCCcCCC-CCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCC--Cccccccccc
Q 027683 160 LNDNRLTG-QIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHI--PLNKYVSSFC 212 (220)
Q Consensus 160 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l--~~l~l~~n~~ 212 (220)
+++|++++ ..|..+.++++|++|++++|++++. ....++++ +.+++.+|..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 99999986 3568899999999999999999852 23455666 8888888765
No 76
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=1.8e-15 Score=114.53 Aligned_cols=106 Identities=24% Similarity=0.208 Sum_probs=93.3
Q ss_pred EEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCC
Q 027683 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (220)
Q Consensus 84 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (220)
+.+++++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999997 6666664 89999999999999888989999999999999999999655556789999999999999
Q ss_pred cCCCCCcccccCCCCCcEEEeecCcCCCc
Q 027683 164 RLTGQIPRELVGISSLKVVDVSSNDLCGT 192 (220)
Q Consensus 164 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 192 (220)
++++..+..+..+++|++|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99966666689999999999999999843
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=9.9e-17 Score=132.00 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCCCCccCCcccCCC-----CCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCC--Ccccc--cC
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK--IPPSL--AK 151 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~~--~~ 151 (220)
.++++|++++|.+++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++|++.+. .|..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 3455555555555543 4434333 4555555555555544445555555555555555554432 12222 44
Q ss_pred CCCCCEEEccCCcCCC--CCc-ccccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCcccccccccchh
Q 027683 152 LKSLVFLRLNDNRLTG--QIP-RELVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 152 l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~~~l 215 (220)
+++|++|++++|++++ .++ ..+..+++|++|++++|++++..|. ...+++|+.|++++|....+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 5555555555555542 111 1223445555555555555544321 13345555555555544433
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=3.7e-16 Score=137.36 Aligned_cols=134 Identities=20% Similarity=0.196 Sum_probs=114.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCC-CCcccccCCCCCCEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL 158 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 158 (220)
..++++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++ ..|..++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 4689999999999998888889999999999999999998877779999999999999999986 356789999999999
Q ss_pred EccCCcCCCCCc-ccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 159 RLNDNRLTGQIP-RELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 159 ~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++++|++.+.+| ..+.++++|++|++++|++++.+|.. +.+++++.+++.+|...
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 999999544554 67899999999999999999877765 66666666666665544
No 79
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.8e-16 Score=118.82 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=107.7
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCC-CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLE-HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 158 (220)
..++++|++++|+++. ++ .+..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4578999999999994 44 355555 999999999999964 578999999999999999995544555899999999
Q ss_pred EccCCcCCCCCcc--cccCCCCCcEEEeecCcCCCcCCC-----CCCCCCCCcccccccccch
Q 027683 159 RLNDNRLTGQIPR--ELVGISSLKVVDVSSNDLCGTIPT-----SGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 159 ~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~-----~~~l~~l~~l~l~~n~~~~ 214 (220)
++++|+++ .+|. .+..+++|++|++++|.++ .+|. .+.+++++.+++.+|....
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999997 5665 7889999999999999998 5665 4678999999998886543
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=136.06 Aligned_cols=127 Identities=24% Similarity=0.226 Sum_probs=109.1
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999999877788999999999999999999877889999999999999999998 66766 8899999999
Q ss_pred cCCcCCC-CCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCC--Cccccccccc
Q 027683 161 NDNRLTG-QIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHI--PLNKYVSSFC 212 (220)
Q Consensus 161 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l--~~l~l~~n~~ 212 (220)
++|++++ .+|..+..+++|++|++++|++++. ....++++ +.+++.+|..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEeecccc
Confidence 9999987 4788899999999999999999852 23456666 7777777654
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=136.83 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=102.3
Q ss_pred CCEEEEEcCCCCCCccCC-cccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCC-CCCcccccCCCCCCEE
Q 027683 81 NRVTRLDLGNSNLSGRLV-PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS-GKIPPSLAKLKSLVFL 158 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L 158 (220)
.++++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 345566666666655444 35677778888888888887777777888888888888888876 4677788888888888
Q ss_pred EccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 159 RLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++++|++++..|..+..+++|++|++++|++++..|.. ..+++++.+++.+|+..
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 88888888777888888888999999988888665543 67788888888888753
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=9.7e-16 Score=126.31 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=109.2
Q ss_pred ceeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCcccc-CCCCCCcEEeCcCCcCCCCCcccccCC
Q 027683 74 HITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPPSLAKL 152 (220)
Q Consensus 74 gv~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l 152 (220)
++.+....++++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+
T Consensus 113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l 190 (317)
T 3o53_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVF 190 (317)
T ss_dssp EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCC
T ss_pred CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-cccc
Confidence 3334444568888888888887777778888999999999999987666666 4688999999999999844 33 3458
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 153 KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 153 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++|++|++++|++++ +|..+..+++|++|++++|+++ .+|.. ..+++++.+++.+|+..
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 999999999999985 4555888999999999999998 56654 77889999999999876
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=2.2e-15 Score=133.25 Aligned_cols=131 Identities=21% Similarity=0.306 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCC--CccccCCCCCCcEEeCcCCcCCCCCcc-cccCCC---
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNNNISGKIPP-SLAKLK--- 153 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~--- 153 (220)
..++++|++++|.+++..+..+.++++|++|++++|++++. .|..+..+++|++|++++|.+++.+|. .+..++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 45677777777777766666677777777777777777642 234566667777777777776653443 244444
Q ss_pred -------------------CCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC--CCCCCCCCccccccccc
Q 027683 154 -------------------SLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT--SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 154 -------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~--~~~l~~l~~l~l~~n~~ 212 (220)
+|++|++++|+++ .+|..+..+++|++|++++|+++ .+|. ...+++++.+++.+|+.
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 5555555555555 45555556666777777777666 4554 35566666666666654
No 84
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=3.3e-15 Score=123.55 Aligned_cols=82 Identities=22% Similarity=0.243 Sum_probs=35.3
Q ss_pred CcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccc
Q 027683 131 LISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVS 209 (220)
Q Consensus 131 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~ 209 (220)
|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.. ..+++++.+++.+
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence 333333333333333344444444444444444444333334444444444444444444 33332 3344444444444
Q ss_pred cccc
Q 027683 210 SFCN 213 (220)
Q Consensus 210 n~~~ 213 (220)
|...
T Consensus 273 N~i~ 276 (330)
T 1xku_A 273 NNIS 276 (330)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 4433
No 85
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.3e-15 Score=135.02 Aligned_cols=119 Identities=25% Similarity=0.350 Sum_probs=104.9
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
.++.|++++|.+++ +|. ++.+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57899999999996 565 999999999999999999 789999999999999999999995 67 89999999999999
Q ss_pred CCcCCCCC-cccccCCCCCcEEEeecCcCCCcCCCCC----CCCCCCcc
Q 027683 162 DNRLTGQI-PRELVGISSLKVVDVSSNDLCGTIPTSG----PFEHIPLN 205 (220)
Q Consensus 162 ~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p~~~----~l~~l~~l 205 (220)
+|++++.. |..+..+++|+.|++++|++++..|... .+++|+.|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 99999776 9999999999999999999997655432 25555554
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=1.2e-15 Score=135.73 Aligned_cols=136 Identities=18% Similarity=0.065 Sum_probs=113.3
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+.+..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 46799999999999988888899999999999999999988888999999999999999999966677889999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCC--cccccccccchh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIP--LNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~--~l~l~~n~~~~l 215 (220)
+++|++++..+..+..+++|++|++++|++++..|.. +.+++++ .+++.+|...-+
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 9999998744344556899999999999998655542 5677777 677777765543
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=4.9e-15 Score=122.68 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=59.5
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCC--CCccccCCC--------------------CCCcEEeCcCC
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG--TIPVELGNL--------------------KSLISLDLYNN 139 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l--------------------~~L~~L~Ls~n 139 (220)
++++|++++|.+++..+..+.++++|++|++++|.++. ..+..+..+ ++|++|++++|
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence 34455555555543333345555555555555555531 222222211 23333333344
Q ss_pred cCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 140 NISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 140 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.. ..+++|+.+++.+|...
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 443333334444455555555555555444444445555555555555554 44432 44444445555444443
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=9.9e-16 Score=125.98 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=93.3
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCC--Ccccc--CCCCCCcEEeCcCCcCCCC--Cc-ccccCCC
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT--IPVEL--GNLKSLISLDLYNNNISGK--IP-PSLAKLK 153 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~n~l~~~--~p-~~~~~l~ 153 (220)
.++++|++++|++.+..+..+.++++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ++ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 6788999999999877778888888999999998887654 23344 6778888888888887721 11 2335667
Q ss_pred CCCEEEccCCcCCCCCc-ccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 154 SLVFLRLNDNRLTGQIP-RELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 154 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
+|++|++++|++++..| ..+..+++|++|++++|+++ .+|..-. ++++.|++++|...-+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCC
Confidence 77778887777776554 34455677777777777776 6665422 6677777777665543
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=2e-15 Score=136.04 Aligned_cols=134 Identities=21% Similarity=0.178 Sum_probs=111.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 35789999999999988888888999999999999999865555789999999999999999876667889999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC---CCCCCCCcccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS---GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~---~~l~~l~~l~l~~n~~~ 213 (220)
+++|++++..|..+.++++|++|++++|++++..+.. ...++|+.+++.+|...
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 9999998888888888999999999999988655432 23477888888887654
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=9.2e-15 Score=119.22 Aligned_cols=124 Identities=30% Similarity=0.457 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCC----------------
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK---------------- 144 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---------------- 144 (220)
.++++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus 68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 143 (291)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccC
Confidence 345555555555553322 4555555555555555542 22 244445555555555544421
Q ss_pred -----CcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCccccccccc
Q 027683 145 -----IPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 145 -----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~ 212 (220)
+ ..+..+++|++|++++|++++..+ +..+++|++|++++|+++ .+|....+++|+.+++.+|++
T Consensus 144 n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 144 NKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEEE
T ss_pred CcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-CChhhccCCCCCEEECcCCcc
Confidence 1 334445555555555555543222 455555555555555554 234344455555555555543
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=6.3e-15 Score=120.21 Aligned_cols=103 Identities=30% Similarity=0.417 Sum_probs=83.8
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|++++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 4566777777766643 4567778888888888888754 568889999999999999995443 899999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCC
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCG 191 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 191 (220)
++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9999995 45 48899999999999999874
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=4.2e-15 Score=123.49 Aligned_cols=127 Identities=24% Similarity=0.345 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|+
T Consensus 220 ~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence 3568888888888875433 78888899999999988853 4678888999999999988853 4578889999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+++|++++..|..+..+++|++|++++|++++..| ...+++++.+++.+|+.+
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 99999988888888899999999999999986555 667889999999998764
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=1.2e-15 Score=120.77 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCC-CCccCCcccCCCCCCcEEEccC-CcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCC--
Q 027683 81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV-- 156 (220)
Q Consensus 81 ~~l~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-- 156 (220)
.++++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 456666666665 5544444566666666666666 66665444556666666666666666653 444 55555555
Q ss_pred -EEEccCC-cCCCCCcccccCCCCCc-EEEeecCcCCCcCCCC-CCCCCCCccccccc
Q 027683 157 -FLRLNDN-RLTGQIPRELVGISSLK-VVDVSSNDLCGTIPTS-GPFEHIPLNKYVSS 210 (220)
Q Consensus 157 -~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n 210 (220)
+|++++| ++++..+..+..+++|+ +|++++|+++ .+|.. ...++++.+++.+|
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 5555555 55544344455555555 5555555554 33332 11134444555444
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.9e-15 Score=112.16 Aligned_cols=114 Identities=26% Similarity=0.228 Sum_probs=99.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCC-cccccCCCCCCEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI-PPSLAKLKSLVFL 158 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L 158 (220)
..++++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 46799999999999965 77999999999999999999878888888999999999999999532 2789999999999
Q ss_pred EccCCcCCCCCc---ccccCCCCCcEEEeecCcCCCcCCCC
Q 027683 159 RLNDNRLTGQIP---RELVGISSLKVVDVSSNDLCGTIPTS 196 (220)
Q Consensus 159 ~L~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~g~~p~~ 196 (220)
++++|.+++..+ ..+..+++|++|++++|.+. .+|..
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 999999996554 47889999999999999987 66653
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1e-14 Score=117.28 Aligned_cols=126 Identities=23% Similarity=0.285 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+ +..+++|++|++++|++++ +|. +.. ++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 62 l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 4678999999999986544 8899999999999999985 443 333 899999999999985 33 588999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
+++|++++. + .+..+++|++|++++|++++. +....+++|+.+++.+|++.-.
T Consensus 135 Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 135 IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 999999854 4 688899999999999999855 5567889999999999876543
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.5e-15 Score=132.44 Aligned_cols=132 Identities=18% Similarity=0.127 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCcc----------------ccCCCCCCcEEeCcCCcCCC
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV----------------ELGNLKSLISLDLYNNNISG 143 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~----------------~l~~l~~L~~L~Ls~n~l~~ 143 (220)
..++++|++++|.+++..+ +..+++|++|++++|.+++..+. ....+++|++|++++|.+++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence 4578888888888876544 66677776666666655432110 00123445555555555555
Q ss_pred CCcccccCCCCCCEEEccCCcCCCCCccccc-CCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccch
Q 027683 144 KIPPSLAKLKSLVFLRLNDNRLTGQIPRELV-GISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 144 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~ 214 (220)
..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |....+++|+.|++++|...-
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE
T ss_pred CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC
Confidence 5555566666666666666666655555543 455555555555555533 333345555555555554443
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=9e-15 Score=117.65 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=107.5
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|+++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ +|... . ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEE
Confidence 4678999999999984 44 68899999999999999996544 9999999999999999994 55433 3 9999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
+++|++++ ++ .+..+++|++|++++|+++ .+|..+.+++|+.|++++|...-+
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCGGGGGCTTCCEEECTTSCCCBC
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCC-CChHHccCCCCCEEECCCCcCcch
Confidence 99999995 34 5889999999999999998 456667889999999999987644
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=124.21 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCC--C--ccccCCCCCCcEEeCcCCcCCCCCcc----cccC
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT--I--PVELGNLKSLISLDLYNNNISGKIPP----SLAK 151 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~ 151 (220)
..++++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 34677888888888766667777778888888888876531 1 112245555555666655554 2222 1344
Q ss_pred CCCCCEEEccCCcCCCCCcccccCC---CCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 152 LKSLVFLRLNDNRLTGQIPRELVGI---SSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|.. .+++|+.|++++|...
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-~~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG-LPAKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC-CCSCCSCEECCSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh-hcCCCCEEECCCCcCC
Confidence 5555666666666555445444443 45555555555555 44432 1245555555555443
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=6e-15 Score=121.24 Aligned_cols=124 Identities=21% Similarity=0.349 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++. +.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 35677777777777643 356667777777777777764 33 266666666666666666632 22 55566666666
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~ 212 (220)
+++|++++ ++. +..+++|++|++++|+++ .++....+++|+.|++++|..
T Consensus 158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 158 IGNAQVSD-LTP-LANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECTTSCC
T ss_pred ccCCcCCC-Chh-hcCCCCCCEEECCCCccC-cChhhcCCCCCCEEEccCCcc
Confidence 66666653 222 555555555555555555 223234445555555555443
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=1.5e-14 Score=118.77 Aligned_cols=127 Identities=22% Similarity=0.358 Sum_probs=108.3
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 4689999999999986543 8999999999999999985 34 68999999999999999985 444 89999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
+++|++++. +. +..+++|++|++++|++++ ++....+++|+.|++.+|...-+
T Consensus 136 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCccCcC-cc-ccCCCCccEEEccCCcCCC-ChhhcCCCCCCEEECCCCccCcC
Confidence 999999854 43 8889999999999999984 55567889999999999877644
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=123.28 Aligned_cols=129 Identities=26% Similarity=0.249 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCCcc--C--CcccCCCCCCcEEEccCCcCCCCCcc----ccCCCCCCcEEeCcCCcCCCCCcccccC
Q 027683 80 DNRVTRLDLGNSNLSGR--L--VPELGKLEHLQYLELYKNNIQGTIPV----ELGNLKSLISLDLYNNNISGKIPPSLAK 151 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 151 (220)
..++++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..+++|++|++++|++++..|..+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 46799999999998752 2 223478999999999999997 3343 2567899999999999999887887777
Q ss_pred C---CCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 152 L---KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 152 l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+ ++|++|++++|+++ .+|..+. ++|++|++++|++++ +|....+++++.+++.+|+..
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTS
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCC
Confidence 6 69999999999999 6777664 799999999999995 455677899999999999864
No 102
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=2.6e-14 Score=107.54 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=91.8
Q ss_pred CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEee
Q 027683 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVS 185 (220)
Q Consensus 106 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 185 (220)
..+++++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 5676653 899999999999998878899999999999999999997777778899999999999
Q ss_pred cCcCCCcCCC-CCCCCCCCcccccccccc
Q 027683 186 SNDLCGTIPT-SGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 186 ~N~l~g~~p~-~~~l~~l~~l~l~~n~~~ 213 (220)
+|++++..+. ...+++|+.+++.+|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999955444 378899999999999865
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=3.8e-15 Score=135.72 Aligned_cols=112 Identities=28% Similarity=0.409 Sum_probs=102.7
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
...++.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.|+ .+|..++.+++|++|+
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 357899999999998 67777889999999999999999 78999999999999999999999 8899999999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCC
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 195 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 195 (220)
|++|.++ .+|..|..+++|++|++++|++++.+|.
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 9999998 7888899999999999999999876553
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=132.28 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=114.8
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 57999999999999888888999999999999999999888889999999999999999999888889999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
++|++.+..+..+..+++|++|++++|.++ .++. +++++.+.+.+|....+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~---~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF---IPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS---CCSCSEEEEESCCCCCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC---CCCcchhccCCCCcccc
Confidence 999999777778899999999999999998 4443 56677777777665433
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.9e-15 Score=107.66 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=97.7
Q ss_pred CCCCcEEEccCCcCC-CCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEE
Q 027683 104 LEHLQYLELYKNNIQ-GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (220)
Q Consensus 104 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 182 (220)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999998 78888899999999999999999955 778999999999999999998788888889999999
Q ss_pred EeecCcCCCc-C-CCCCCCCCCCcccccccccchhh
Q 027683 183 DVSSNDLCGT-I-PTSGPFEHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 183 ~l~~N~l~g~-~-p~~~~l~~l~~l~l~~n~~~~l~ 216 (220)
++++|++++. . +..+.+++++.+++++|...-+.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 9999999863 2 33478899999999999876554
No 106
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=6.6e-14 Score=105.80 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=91.6
Q ss_pred CcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeec
Q 027683 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSS 186 (220)
Q Consensus 107 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 186 (220)
-+.+++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997 6777664 8999999999999988888999999999999999999976666678999999999999
Q ss_pred CcCCCcCCC-CCCCCCCCcccccccccchh
Q 027683 187 NDLCGTIPT-SGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 187 N~l~g~~p~-~~~l~~l~~l~l~~n~~~~l 215 (220)
|++++..+. .+.+++|+.+++.+|+..-.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999954443 47889999999999987633
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=1.3e-14 Score=128.66 Aligned_cols=124 Identities=26% Similarity=0.342 Sum_probs=67.7
Q ss_pred CCcce-eeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccc
Q 027683 71 TWFHI-TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL 149 (220)
Q Consensus 71 ~~~gv-~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 149 (220)
.|.++ .|. .++++.|++++|++++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h
Confidence 56676 553 2456777777777764 444442 56666666666666 444 335566666666666663 444 4
Q ss_pred cCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 150 AKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
.. +|++|++++|++++ +|. .+++|++|++++|++++ +|. .+++|+.|++++|...
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS
T ss_pred hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCC
Confidence 33 55555555555553 343 34555555555555552 443 2444555555554433
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=3.1e-14 Score=127.10 Aligned_cols=124 Identities=27% Similarity=0.382 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|+|++|.+.+. +.+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|
T Consensus 87 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp TTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred CCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 3455555555555431 245555566666666666553 2 2355566666666666666533 44566666666666
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
++|++.+..| +..+++|+.|++++|++++ +|....+++|+.|++.+|++.
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEEE
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcCc
Confidence 6666664433 6666667777777776663 455556666777776666543
No 109
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=4.9e-14 Score=117.24 Aligned_cols=102 Identities=23% Similarity=0.185 Sum_probs=87.4
Q ss_pred EcCCC-CCCccCCcccCCCCCCcEEEccC-CcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCc
Q 027683 87 DLGNS-NLSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNR 164 (220)
Q Consensus 87 ~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (220)
+.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44555 677 4677 99999999999996 99998777889999999999999999998888889999999999999999
Q ss_pred CCCCCcccccCCCCCcEEEeecCcCCC
Q 027683 165 LTGQIPRELVGISSLKVVDVSSNDLCG 191 (220)
Q Consensus 165 l~~~~p~~~~~l~~L~~L~l~~N~l~g 191 (220)
+++..+..+..++ |+.|++.+|++..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9966555555555 9999999999873
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=7.3e-15 Score=121.05 Aligned_cols=132 Identities=22% Similarity=0.136 Sum_probs=99.8
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccc-cCCCCCCEEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVFLR 159 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 159 (220)
.++++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 3455566666666644332 35778899999999987777788888999999999999987666665 4788999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchhhh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLLLA 217 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l~~ 217 (220)
+++|++++. +. ...+++|++|++++|++++..+....+++++.+++++|....++.
T Consensus 176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 999998854 33 345889999999999998544445778889999999988776554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=5.6e-14 Score=125.46 Aligned_cols=127 Identities=28% Similarity=0.346 Sum_probs=111.4
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..+++.|+|++|.+.+..+ +..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|+.|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEE
Confidence 4689999999999996554 8999999999999999985 44 78999999999999999985 3 4588999999999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
|++|++++. ..+..+++|+.|++++|.+.+..| ...+++|+.|++++|...-+
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 999999964 578899999999999999996655 77889999999999977654
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=4.7e-14 Score=121.99 Aligned_cols=123 Identities=27% Similarity=0.376 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccC
Q 027683 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (220)
Q Consensus 83 l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (220)
+++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..| +..+++|++|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 4444444444443221 4444455555555555443222 4445555555555555553332 44555566666666
Q ss_pred CcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccch
Q 027683 163 NRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~ 214 (220)
|++++. ..+..+++|+.|++++|++++..| ...+++++.+++.+|+..-
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 655533 345566666666666666665554 4556666666666665443
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=1.7e-13 Score=118.42 Aligned_cols=123 Identities=25% Similarity=0.361 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
++++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 45555555555553322 5555556666666666554322 5556666666666666653322 5566666666666
Q ss_pred CCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 162 DNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+|++++..| +..+++|+.|++++|++++ ++....+++|+.+++.+|...
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCccC
Confidence 666664433 5566667777777776663 344456667777777666544
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=2.9e-14 Score=107.70 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=93.4
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcc--cccCCCCCCEE
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFL 158 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L 158 (220)
.++++|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3799999999999965 67999999999999999999655555689999999999999997 5666 78999999999
Q ss_pred EccCCcCCCCCccc----ccCCCCCcEEEeecCcCC
Q 027683 159 RLNDNRLTGQIPRE----LVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 159 ~L~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 190 (220)
++++|.+. ..|.. +..+++|++|++++|...
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999998 55654 889999999999999765
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=1.5e-13 Score=114.74 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=105.8
Q ss_pred CCCCCcceeeCC----------CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCc-cccCCCCCCcE-Ee
Q 027683 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP-VELGNLKSLIS-LD 135 (220)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~ 135 (220)
+.|++..|.|.. ..++++|+|++|+++...+..|.++++|++|++++|++.+.+| ..|.++++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 347788888853 1468999999999996656679999999999999999876555 46788888765 66
Q ss_pred CcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeec-CcCCCcCCCC---CCCCCCCcccccccc
Q 027683 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSS-NDLCGTIPTS---GPFEHIPLNKYVSSF 211 (220)
Q Consensus 136 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~g~~p~~---~~l~~l~~l~l~~n~ 211 (220)
+..|+++...|..+..+++|++|++++|++++..+..+....++..+++.+ |++. .+|.. +....+..+++.+|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence 777999977788899999999999999999865554455555566666654 3343 44332 112334455666665
Q ss_pred cchhh
Q 027683 212 CNLLL 216 (220)
Q Consensus 212 ~~~l~ 216 (220)
.+.+.
T Consensus 166 i~~i~ 170 (350)
T 4ay9_X 166 IQEIH 170 (350)
T ss_dssp CCEEC
T ss_pred ccCCC
Confidence 55443
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=7.1e-13 Score=109.94 Aligned_cols=126 Identities=24% Similarity=0.314 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++. ++ +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE
Confidence 35678888888887743 33 7778888888888888774 33 57778888888888888773 343 67777777777
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 160 LNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+++|......+ .+..+++|++|++++|.+. .++....+++++.+++.+|...
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECTTSCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcC-CchhhccCCCCCEEEccCCccc
Confidence 77775553333 3666777777777777666 3333455666666666666544
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=8.4e-13 Score=117.04 Aligned_cols=94 Identities=31% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.+++.|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 344455555554443 333 322 44444444444443 332 33444444444444442 332 2344444444
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCC
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
++|++++ +|. +. ++|++|++++|+++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 4444442 333 22 34444444444444
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=2.6e-13 Score=120.32 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=95.8
Q ss_pred CCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEee
Q 027683 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVS 185 (220)
Q Consensus 106 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 185 (220)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|++++ +| .+..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57899999999996 676 999999999999999999 889999999999999999999996 67 79999999999999
Q ss_pred cCcCCCcC-CCC-CCCCCCCcccccccccchhh
Q 027683 186 SNDLCGTI-PTS-GPFEHIPLNKYVSSFCNLLL 216 (220)
Q Consensus 186 ~N~l~g~~-p~~-~~l~~l~~l~l~~n~~~~l~ 216 (220)
+|++++.. |.. +.+++|+.|++++|+..-++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 99999775 654 88999999999999887554
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.44 E-value=2.1e-12 Score=111.74 Aligned_cols=122 Identities=21% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCc--------------------cccCCCCCCcEEeCcCC
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--------------------VELGNLKSLISLDLYNN 139 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p--------------------~~l~~l~~L~~L~Ls~n 139 (220)
..++++|++++|.+++. + +..+++|++|++++|.+++. + -.+..+++|++|++++|
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 34566666666666642 2 55556666666666655542 1 01333444455555555
Q ss_pred cCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 140 NISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 140 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
++++ +| +..+++|++|++++|++++. .+..+++|++|++++|++++ +| .+.+++++.+++.+|...
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCS
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCC
Confidence 5543 22 44444555555555554432 14455555555555555553 44 344555555555555443
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.2e-16 Score=121.68 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=96.0
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEE
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (220)
..++++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 4578888888888885 55 7788888999999998888 567677777888899999988884 45 577888889999
Q ss_pred ccCCcCCCCCc-ccccCCCCCcEEEeecCcCCCcCCC-----------CCCCCCCCccccccccc
Q 027683 160 LNDNRLTGQIP-RELVGISSLKVVDVSSNDLCGTIPT-----------SGPFEHIPLNKYVSSFC 212 (220)
Q Consensus 160 L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~-----------~~~l~~l~~l~l~~n~~ 212 (220)
+++|++++..+ ..+..+++|++|++++|++.+.+|. ...+++++.++ ++++
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 99888874322 4677888899999998888876654 24566666664 5544
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.42 E-value=2.1e-12 Score=111.61 Aligned_cols=120 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++ +| .+.++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356777777777764 44 47777777777777777764 44332 366777777777664 44 4666777777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
++|++++ +|... ++|++|++++|+++ .+|..+.+++++.+++.+|...
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC
Confidence 7666663 33211 35555555555555 4554455555555555555443
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=3.8e-12 Score=110.06 Aligned_cols=96 Identities=24% Similarity=0.267 Sum_probs=67.5
Q ss_pred cCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 027683 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (220)
Q Consensus 101 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 180 (220)
+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 5667777778888888775 44 67778888888888888753 37777888888888888875 45 67778888
Q ss_pred EEEeecCcCCCcCCCCCCCCCCCcccc
Q 027683 181 VVDVSSNDLCGTIPTSGPFEHIPLNKY 207 (220)
Q Consensus 181 ~L~l~~N~l~g~~p~~~~l~~l~~l~l 207 (220)
+|++++|++++. |. +.+++++.+++
T Consensus 237 ~L~l~~N~l~~~-~~-~~l~~L~~L~l 261 (457)
T 3bz5_A 237 YFDCSVNPLTEL-DV-STLSKLTTLHC 261 (457)
T ss_dssp EEECCSSCCSCC-CC-TTCTTCCEEEC
T ss_pred EEEeeCCcCCCc-CH-HHCCCCCEEec
Confidence 888888888754 32 33454444433
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=7.8e-15 Score=121.22 Aligned_cols=105 Identities=22% Similarity=0.148 Sum_probs=46.7
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCC-CccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
+++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 344455555444433322 33444455555555544432 3444444444555555544444444444444444444444
Q ss_pred cCC-cCCCC-CcccccCCCCCcEEEeecC
Q 027683 161 NDN-RLTGQ-IPRELVGISSLKVVDVSSN 187 (220)
Q Consensus 161 ~~n-~l~~~-~p~~~~~l~~L~~L~l~~N 187 (220)
++| .+++. ++..+..+++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 444 33321 2333344444444444444
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.4e-12 Score=108.32 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=88.4
Q ss_pred cEEEccCC-cCCCCCccccCCCCCCcEEeCcC-CcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEee
Q 027683 108 QYLELYKN-NIQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVS 185 (220)
Q Consensus 108 ~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 185 (220)
..++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5787 99999999999996 99997777889999999999999999999888899999999999999
Q ss_pred cCcCCCcCCCCCCCCCCCcccccccccc
Q 027683 186 SNDLCGTIPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 186 ~N~l~g~~p~~~~l~~l~~l~l~~n~~~ 213 (220)
+|++++..+.......|+.|.+.+|+.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999944333322233899999998765
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=5.6e-16 Score=119.38 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=105.0
Q ss_pred CEEEEEcCCCCCCccCCc------ccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCC
Q 027683 82 RVTRLDLGNSNLSGRLVP------ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 155 (220)
.++.++++++.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344555555555555554 88999999999999999996 66 8889999999999999999 788888888999
Q ss_pred CEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCC--CCCCCCCCCcccccccccch
Q 027683 156 VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP--TSGPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 156 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p--~~~~l~~l~~l~l~~n~~~~ 214 (220)
++|++++|++++ +| .+..+++|++|++++|++++..+ ....+++++.+++.+|+..-
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 999999999995 55 58889999999999999984221 23778999999999997753
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.6e-14 Score=119.41 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=55.8
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCC-cCCCC-CccccCCCCCCcEEeCcCC-cCCCC-CcccccCCC-CCC
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLK-SLV 156 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~-~L~ 156 (220)
++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 3444444444444333344444444444444444 33321 2333334444444444444 44321 233334444 444
Q ss_pred EEEccCC--cCC-CCCcccccCCCCCcEEEeecCc-CCCcCCC-CCCCCCCCccccccc
Q 027683 157 FLRLNDN--RLT-GQIPRELVGISSLKVVDVSSND-LCGTIPT-SGPFEHIPLNKYVSS 210 (220)
Q Consensus 157 ~L~L~~n--~l~-~~~p~~~~~l~~L~~L~l~~N~-l~g~~p~-~~~l~~l~~l~l~~n 210 (220)
+|++++| .++ +.+|..+..+++|++|++++|. +++..+. ...+++|+.|++.+|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4444444 222 1233334445555555555555 3322222 244455555555554
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=2.9e-14 Score=120.39 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=94.8
Q ss_pred CCEEEEEcCCCCCC-ccCC---cccCCCCCCcEEEccCCcCCC-----CCccccCCCCCCcEEeCcCCcCC----CCCcc
Q 027683 81 NRVTRLDLGNSNLS-GRLV---PELGKLEHLQYLELYKNNIQG-----TIPVELGNLKSLISLDLYNNNIS----GKIPP 147 (220)
Q Consensus 81 ~~l~~L~L~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~ 147 (220)
.++++|++++|+++ +.++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 56777888888776 2233 345567788888888888762 23436777888888888888885 45677
Q ss_pred cccCCCCCCEEEccCCcCCCC----Cccccc--CCCCCcEEEeecCcCCC----cCCCC--CCCCCCCcccccccccc
Q 027683 148 SLAKLKSLVFLRLNDNRLTGQ----IPRELV--GISSLKVVDVSSNDLCG----TIPTS--GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~--~l~~L~~L~l~~N~l~g----~~p~~--~~l~~l~~l~l~~n~~~ 213 (220)
.+..+++|++|++++|++++. ++..+. .+++|++|++++|++++ .+|.. ..+++|+.|++.+|+..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 777888888888888888754 455553 37888888888888886 35543 34688888888887764
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=1.2e-11 Score=106.75 Aligned_cols=120 Identities=25% Similarity=0.320 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|.+++. +.. .++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..+ ++|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEEC
Confidence 3455555555555431 110 1467777777777774 55 47777777777777777773 45433 47777777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCCCCCCCCcccccccccchh
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNKYVSSFCNLL 215 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~~l~~l~l~~n~~~~l 215 (220)
++|++++ +| .+..+++|++|++++|++++ +|.. .++++.+++.+|....+
T Consensus 181 ~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 181 GNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNILEEL 230 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSSC
T ss_pred cCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCcCCcc
Confidence 7777774 45 46777778888888777774 5543 35677777777765543
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=1.7e-11 Score=109.75 Aligned_cols=56 Identities=25% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCcccccccccc
Q 027683 153 KSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 153 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
++|++|++++|+++ .+|. .+++|+.|++++|+++ .+|.. ..+++|+.+++.+|+..
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 44555555555555 3333 3455666666666665 55543 55566666666666554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=2.7e-11 Score=108.44 Aligned_cols=94 Identities=28% Similarity=0.428 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (220)
.++++|++++|+++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence 35666666666665 3333 3456666666666665 3443 4566666666666666 3343 4466666777
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeecCcCC
Q 027683 161 NDNRLTGQIPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
++|++++ +|.. +++|++|++++|+++
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 7776663 4432 367777777777776
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=5.6e-14 Score=118.59 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=64.2
Q ss_pred CCCcEEEccCCcCC-CCCc---cccCCCCCCcEEeCcCCcCCC-----CCcccccCCCCCCEEEccCCcCC----CCCcc
Q 027683 105 EHLQYLELYKNNIQ-GTIP---VELGNLKSLISLDLYNNNISG-----KIPPSLAKLKSLVFLRLNDNRLT----GQIPR 171 (220)
Q Consensus 105 ~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~ 171 (220)
++|++|++++|.++ +..+ ..+..+++|++|++++|.++. ..|..+..+++|++|++++|+++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 55566666666554 2223 234455666666666666652 12225566667777777777764 34566
Q ss_pred cccCCCCCcEEEeecCcCCCc----CCCC---CCCCCCCcccccccccch
Q 027683 172 ELVGISSLKVVDVSSNDLCGT----IPTS---GPFEHIPLNKYVSSFCNL 214 (220)
Q Consensus 172 ~~~~l~~L~~L~l~~N~l~g~----~p~~---~~l~~l~~l~l~~n~~~~ 214 (220)
.+..+++|++|++++|++++. +|.. +.+++|+.|++++|...-
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 666667777777777776643 2221 235667777777766554
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=2.4e-13 Score=113.97 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=94.5
Q ss_pred CEEEEEcCCCCCCccCCcccCCC-----CCCcEEEccCCcCCCCCccc----cCCC-CCCcEEeCcCCcCCCCCcccc--
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVE----LGNL-KSLISLDLYNNNISGKIPPSL-- 149 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~Ls~n~l~~~~p~~~-- 149 (220)
++++|++++|.+++..+..+..+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 78888888888887666666554 88888888888887665553 3334 788888888888876555443
Q ss_pred --cC-CCCCCEEEccCCcCCCCCc----ccccCCC-CCcEEEeecCcCCCcCCCC-----CCC-CCCCcccccccccch
Q 027683 150 --AK-LKSLVFLRLNDNRLTGQIP----RELVGIS-SLKVVDVSSNDLCGTIPTS-----GPF-EHIPLNKYVSSFCNL 214 (220)
Q Consensus 150 --~~-l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~l~~N~l~g~~p~~-----~~l-~~l~~l~l~~n~~~~ 214 (220)
.. .++|++|++++|++++..+ ..+...+ +|++|++++|++++..+.. ..+ ++++.|++++|...-
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 33 3588899999888875433 3344555 8999999999887554321 233 588888888887654
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=1.6e-11 Score=102.33 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=98.1
Q ss_pred eeeCCCCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCc-ccccCCC
Q 027683 75 ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-PSLAKLK 153 (220)
Q Consensus 75 v~c~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~ 153 (220)
..|.. +.++.++++++ .+|..+ .+++++|++++|+|+...+..|.++++|++|++++|++.+.+| ..|.+++
T Consensus 7 C~C~~----~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 7 CHCSN----RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp SEEET----TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred cEeeC----CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 45643 35788899998 667666 3689999999999996556679999999999999999876665 4678898
Q ss_pred CCCE-EEccCCcCCCCCcccccCCCCCcEEEeecCcCCCcCCCCC--CCCCCCcccccc
Q 027683 154 SLVF-LRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSG--PFEHIPLNKYVS 209 (220)
Q Consensus 154 ~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~--~l~~l~~l~l~~ 209 (220)
++++ +.+..|++++..|+.|..+++|++|++++|++. .+|... ...++..+.+.+
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEES
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcc
Confidence 8775 667789999777888999999999999999998 455432 233333444433
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=5.8e-13 Score=111.58 Aligned_cols=133 Identities=21% Similarity=0.195 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCCccCC----cccCCCC-CCcEEEccCCcCCCCCccccCCC-----CCCcEEeCcCCcCCCCCccc--
Q 027683 81 NRVTRLDLGNSNLSGRLV----PELGKLE-HLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPS-- 148 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~-- 148 (220)
.++++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999997766 6678888 89999999999997777776664 89999999999999766664
Q ss_pred --ccCC-CCCCEEEccCCcCCCCCcccc----cC-CCCCcEEEeecCcCCCcCCC----C-CCC-CCCCcccccccccc
Q 027683 149 --LAKL-KSLVFLRLNDNRLTGQIPREL----VG-ISSLKVVDVSSNDLCGTIPT----S-GPF-EHIPLNKYVSSFCN 213 (220)
Q Consensus 149 --~~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g~~p~----~-~~l-~~l~~l~l~~n~~~ 213 (220)
+..+ ++|++|++++|++++..+..+ .. .++|++|++++|++++..+. . ..+ ++++.|++++|...
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3444 899999999999987665543 34 36999999999999843221 1 223 48999999998765
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.16 E-value=2.2e-13 Score=117.01 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=54.6
Q ss_pred CEEEEEcCCCCCCcc----CCcccCCCCCCcEEEccCCcCCCCCccccC-----CCCCCcEEeCcCCcCCCC----Cccc
Q 027683 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGTIPVELG-----NLKSLISLDLYNNNISGK----IPPS 148 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~ 148 (220)
++++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 455555555555432 233334445555555555544322111111 113444444444444432 2233
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccC-----CCCCcEEEeecCcCCC----cCCCC-CCCCCCCccccccccc
Q 027683 149 LAKLKSLVFLRLNDNRLTGQIPRELVG-----ISSLKVVDVSSNDLCG----TIPTS-GPFEHIPLNKYVSSFC 212 (220)
Q Consensus 149 ~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~l~~N~l~g----~~p~~-~~l~~l~~l~l~~n~~ 212 (220)
+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|.. ..+++|+.+++++|..
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 334455555555555444322222211 3455555555555543 23322 2344455555555443
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.07 E-value=2.9e-12 Score=110.05 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccC-----CCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCCCCccccc
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELG-----KLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGKIPPSLA 150 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 150 (220)
..++++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 46799999999998754433332 236999999999999865 456677789999999999999865444443
Q ss_pred C-----CCCCCEEEccCCcCCC----CCcccccCCCCCcEEEeecCcCCCc--------CCCCCCCCCCCcccccccccc
Q 027683 151 K-----LKSLVFLRLNDNRLTG----QIPRELVGISSLKVVDVSSNDLCGT--------IPTSGPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 151 ~-----l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~--------~p~~~~l~~l~~l~l~~n~~~ 213 (220)
. .++|++|++++|++++ .+|..+..+++|++|++++|++++. +|. ...+++.|.+.++..+
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~--~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS--TTCCCCEEECTTCCCC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc--CCcchhheeecccccC
Confidence 2 6899999999999986 6788888899999999999999854 332 2446777777666655
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=1.3e-11 Score=103.95 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCCCCccCCccc-CCCCCCcEEEccCCcCCCCCcccc-----CCCCCCcEEeCcCCcCCCC----Cccccc
Q 027683 81 NRVTRLDLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVEL-----GNLKSLISLDLYNNNISGK----IPPSLA 150 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~~~ 150 (220)
.++++|+|++|.+++.....+ ..+++|++|++++|.++......+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 478888888888874333222 235678888888888864333332 3457788888888887632 334456
Q ss_pred CCCCCCEEEccCCcCCCC----CcccccCCCCCcEEEeecCcCCCc----CCCC-CCCCCCCcccccccccc
Q 027683 151 KLKSLVFLRLNDNRLTGQ----IPRELVGISSLKVVDVSSNDLCGT----IPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 151 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~----~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
..++|++|+|++|++++. +...+...++|++|++++|.+++. ++.. ...+.|+.|++++|...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 778888888888887642 244556677888888888888632 1111 23467888888887654
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.9e-09 Score=85.55 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCc-EEEeecCcCCCcCCCC--CCCCCCCc
Q 027683 128 LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK-VVDVSSNDLCGTIPTS--GPFEHIPL 204 (220)
Q Consensus 128 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~~p~~--~~l~~l~~ 204 (220)
+++|+.+++++|.++...+..|.++++|+.+++.+| ++...+..|.++++|+ .+++.+ .++ .++.. ..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 556777777777776444455777777777777776 5545556667777777 777766 454 44332 45566666
Q ss_pred ccccccccchh
Q 027683 205 NKYVSSFCNLL 215 (220)
Q Consensus 205 l~l~~n~~~~l 215 (220)
+++.+|....+
T Consensus 302 l~l~~n~i~~I 312 (329)
T 3sb4_A 302 VLATGDKITTL 312 (329)
T ss_dssp EEECSSCCCEE
T ss_pred EEeCCCccCcc
Confidence 66655555443
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=3e-10 Score=95.63 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCCCCccCCccc-----CCCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCCC----Ccc
Q 027683 81 NRVTRLDLGNSNLSGRLVPEL-----GKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPP 147 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 147 (220)
.++++|+|++|.+++.....+ ...++|++|++++|.++.. ++..+...++|++|++++|.+++. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 479999999999985543333 3468899999999998642 344457788999999999999743 245
Q ss_pred cccCCCCCCEEEccCCcCCCC----CcccccCCCCCcEEEeecCcCCC
Q 027683 148 SLAKLKSLVFLRLNDNRLTGQ----IPRELVGISSLKVVDVSSNDLCG 191 (220)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g 191 (220)
.+...++|++|++++|.+++. +...+...++|++|++++|.+++
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 567788999999999999853 33445567899999999999973
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.3e-08 Score=83.88 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=60.3
Q ss_pred CCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCC-EEEccCCcCCCCCcccccCCCCCcEE
Q 027683 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV-FLRLNDNRLTGQIPRELVGISSLKVV 182 (220)
Q Consensus 104 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L 182 (220)
+++|+.+++++|+++...+..|.++++|+.+++++| ++...+..|.++++|+ .+++.+ +++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567777777777777555556777777777777776 5544455677777777 777766 5554555667777777777
Q ss_pred EeecCcCCCcCCC
Q 027683 183 DVSSNDLCGTIPT 195 (220)
Q Consensus 183 ~l~~N~l~g~~p~ 195 (220)
++++|.++ .++.
T Consensus 303 ~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 303 LATGDKIT-TLGD 314 (329)
T ss_dssp EECSSCCC-EECT
T ss_pred EeCCCccC-ccch
Confidence 77777776 4443
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=1.2e-10 Score=102.93 Aligned_cols=60 Identities=7% Similarity=-0.009 Sum_probs=24.9
Q ss_pred CCCCCEEEccCCcCCC-CCcccccCCCCCcEEEeecCcCCCc-CCCC-CCCCCCCcccccccc
Q 027683 152 LKSLVFLRLNDNRLTG-QIPRELVGISSLKVVDVSSNDLCGT-IPTS-GPFEHIPLNKYVSSF 211 (220)
Q Consensus 152 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~-~p~~-~~l~~l~~l~l~~n~ 211 (220)
+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.. ..+++|+.|++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 4444444444444443 1222234444455555555544322 1111 234444444444443
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=1.9e-08 Score=80.78 Aligned_cols=95 Identities=26% Similarity=0.375 Sum_probs=63.4
Q ss_pred EEccCCcCC---CCCccccCCCCCCcEEeCcCCcCCC--CCcccccCCCCCCEEEccCCcCCCCCcccccCCC--CCcEE
Q 027683 110 LELYKNNIQ---GTIPVELGNLKSLISLDLYNNNISG--KIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGIS--SLKVV 182 (220)
Q Consensus 110 L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L 182 (220)
++++.|... +.++.....+++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..++ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566666432 1111122457788999999998886 3446667888899999999988854 2233333 88899
Q ss_pred EeecCcCCCcCCC--------CCCCCCCCccc
Q 027683 183 DVSSNDLCGTIPT--------SGPFEHIPLNK 206 (220)
Q Consensus 183 ~l~~N~l~g~~p~--------~~~l~~l~~l~ 206 (220)
++++|.+++.+|. ...+++|..|+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999998877663 14566666554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.61 E-value=4.2e-09 Score=93.00 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=26.9
Q ss_pred CCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCC----CCcccccCCCCCCEEEccCCcCC
Q 027683 103 KLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISG----KIPPSLAKLKSLVFLRLNDNRLT 166 (220)
Q Consensus 103 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 166 (220)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 344555555555544332 11222334445555555544431 11222334444444444444433
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=4.6e-09 Score=79.78 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCC-CCCcc----CCcccCCCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCCC----Cc
Q 027683 80 DNRVTRLDLGNS-NLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IP 146 (220)
Q Consensus 80 ~~~l~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p 146 (220)
...+++|+|++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.++.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467899999999 88743 234466678899999999998642 233455567899999999999843 34
Q ss_pred ccccCCCCCCEEEc--cCCcCCCC----CcccccCCCCCcEEEeecCcCC
Q 027683 147 PSLAKLKSLVFLRL--NDNRLTGQ----IPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 147 ~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
..+...+.|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 55677788999999 88988743 3344556688999999998875
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=1e-09 Score=96.93 Aligned_cols=131 Identities=10% Similarity=0.072 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCCCCccCCcccC-CCCCCcEEEcc--C----CcCCCC-----CccccCCCCCCcEEeCcCCcCCCCCccc
Q 027683 81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELY--K----NNIQGT-----IPVELGNLKSLISLDLYNNNISGKIPPS 148 (220)
Q Consensus 81 ~~l~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 148 (220)
.++++|.+..+++++.....+. .+++|++|+++ + +.+++. ++..+..+++|++|++++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 3455555555555543333333 36677777777 3 444421 111245566777777765 555443344
Q ss_pred ccC-CCCCCEEEccCCcCCCCCcccc-cCCCCCcEEEeecCcCCCcCCC-C-CCCCCCCccccccccc
Q 027683 149 LAK-LKSLVFLRLNDNRLTGQIPREL-VGISSLKVVDVSSNDLCGTIPT-S-GPFEHIPLNKYVSSFC 212 (220)
Q Consensus 149 ~~~-l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~g~~p~-~-~~l~~l~~l~l~~n~~ 212 (220)
+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... . ..+++|+.|++++|+.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 444 7788888888888765444333 5678888888888888643221 1 4567888888888765
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=5.4e-08 Score=78.14 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=60.2
Q ss_pred CCCCCCcEEEccCCcCCC--CCccccCCCCCCcEEeCcCCcCCCCCcccccCCC--CCCEEEccCCcCCCCCcc------
Q 027683 102 GKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK--SLVFLRLNDNRLTGQIPR------ 171 (220)
Q Consensus 102 ~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~------ 171 (220)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347789999999999986 3345566888999999999999854 3344444 899999999998876652
Q ss_pred -cccCCCCCcEEE
Q 027683 172 -ELVGISSLKVVD 183 (220)
Q Consensus 172 -~~~~l~~L~~L~ 183 (220)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356788888776
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.35 E-value=1.1e-08 Score=90.39 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCCCCccCCcccC-CCCCCcEEEccCC-cCCCC-CccccCCCCCCcEEeCcCCcCCCCCcccc----cCC
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSL----AKL 152 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l 152 (220)
..++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35788899998888766655554 5788999999888 44422 33444578889999999888775544333 366
Q ss_pred CCCCEEEccCCc--CCC-CCcccccCCCCCcEEEeecCcCCCcCCCC-CCCCCCCccc
Q 027683 153 KSLVFLRLNDNR--LTG-QIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNK 206 (220)
Q Consensus 153 ~~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~l~~l~~l~ 206 (220)
++|++|++++|. +.. .++..+..+++|++|++++|...+.+|.. ..+++|+.+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 788999988886 221 11122245688888888887222123322 3344555554
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=5.9e-08 Score=73.59 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=86.0
Q ss_pred CcccCCCCCCcEEEccCC-cCCCC----CccccCCCCCCcEEeCcCCcCCCC----CcccccCCCCCCEEEccCCcCCCC
Q 027683 98 VPELGKLEHLQYLELYKN-NIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPSLAKLKSLVFLRLNDNRLTGQ 168 (220)
Q Consensus 98 ~~~l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~ 168 (220)
...+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...+.|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345677899999999999 88642 344567788999999999999742 233455668999999999999853
Q ss_pred ----CcccccCCCCCcEEEe--ecCcCCCcC----CCC-CCCCCCCccccccccc
Q 027683 169 ----IPRELVGISSLKVVDV--SSNDLCGTI----PTS-GPFEHIPLNKYVSSFC 212 (220)
Q Consensus 169 ----~p~~~~~l~~L~~L~l--~~N~l~g~~----p~~-~~l~~l~~l~l~~n~~ 212 (220)
+...+...+.|++|++ ++|.+...- ... ...+.|+.|++.+|..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3456677889999999 889987431 111 3347788899888765
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=2.5e-07 Score=77.51 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCcccc--CCCCCCcEEeCcC--CcCCCC-----Ccccc-
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL--GNLKSLISLDLYN--NNISGK-----IPPSL- 149 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~--n~l~~~-----~p~~~- 149 (220)
..++++|+++++.-. .+++ + .+++|++|++..+.+.......+ ..+++|++|+|+. |...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 356777777766211 1222 3 26677777777776653222222 2577888887753 221111 11112
Q ss_pred -cCCCCCCEEEccCCcCCCCCcccc---cCCCCCcEEEeecCcCCCc----CCCC-CCCCCCCcccccccccc
Q 027683 150 -AKLKSLVFLRLNDNRLTGQIPREL---VGISSLKVVDVSSNDLCGT----IPTS-GPFEHIPLNKYVSSFCN 213 (220)
Q Consensus 150 -~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~g~----~p~~-~~l~~l~~l~l~~n~~~ 213 (220)
..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.+. ++.. ..+++|+.|++.+|...
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 246788888888887764332222 2467888888888887742 3332 45677888888777543
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=5.3e-07 Score=67.73 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCc-CCCCCccccCCC----CCCcEEeCcCCc-CCCCCcccccCCCCC
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNL----KSLISLDLYNNN-ISGKIPPSLAKLKSL 155 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~~~~l~~L 155 (220)
++++||++++.+++.--..+.++++|++|+|++|. ++..--..+..+ ++|++|++++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777665544556667777777777764 443222223332 356666666653 553333345556666
Q ss_pred CEEEccCCc
Q 027683 156 VFLRLNDNR 164 (220)
Q Consensus 156 ~~L~L~~n~ 164 (220)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=8e-07 Score=66.76 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=66.2
Q ss_pred CCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCc-CCCCCcccccCC----CCCCEEEccCCc-CCCCCcccccCCCC
Q 027683 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN-ISGKIPPSLAKL----KSLVFLRLNDNR-LTGQIPRELVGISS 178 (220)
Q Consensus 105 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 178 (220)
..|+.||++++.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999986655667899999999999995 775433445554 479999999985 77543445678999
Q ss_pred CcEEEeecCc
Q 027683 179 LKVVDVSSND 188 (220)
Q Consensus 179 L~~L~l~~N~ 188 (220)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999874
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.10 E-value=1.6e-05 Score=67.40 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=66.0
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCC-----CCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCC
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ-----GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 156 (220)
.++.+.+ .++++......|.++++|+.+++.+|.+. ...+..|..+++|+.+++.+ .++......|.++++|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 3444444 23344334456777777777777776654 23455677777777777773 45534445677777777
Q ss_pred EEEccCCcCCCCCcccccCCCCCcEEEeecCcCC
Q 027683 157 FLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 157 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
.+++..| ++......|.++ +|+.+++.+|...
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 7777544 554555667777 7888888777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=4.2e-07 Score=76.15 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCCCCccCCcccC--CCCCCcEEEccC--CcCCCC-----Ccccc--CCCCCCcEEeCcCCcCCCCCccc
Q 027683 80 DNRVTRLDLGNSNLSGRLVPELG--KLEHLQYLELYK--NNIQGT-----IPVEL--GNLKSLISLDLYNNNISGKIPPS 148 (220)
Q Consensus 80 ~~~l~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~-----~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~ 148 (220)
..+++.|++..+.+.......+. .+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 46799999998887754333343 689999999863 222111 11122 35789999999999987433322
Q ss_pred c---cCCCCCCEEEccCCcCCCC----CcccccCCCCCcEEEeecCcCC
Q 027683 149 L---AKLKSLVFLRLNDNRLTGQ----IPRELVGISSLKVVDVSSNDLC 190 (220)
Q Consensus 149 ~---~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 190 (220)
+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 3578999999999998853 3334456789999999999887
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.00 E-value=3.6e-05 Score=65.22 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=62.8
Q ss_pred CEEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEcc
Q 027683 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (220)
Q Consensus 82 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (220)
+++.+.+.+ .+.......|.++.+|+.+++++|.++......|. ..+|+.+.+..+ ++......|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 355555554 34433344566666666666666655533233333 345555555432 332223344444444444443
Q ss_pred C---------------------CcCCCCCcccccCCCCCcEEEeecCcCC----CcCCCC--CCCCCCCccccc
Q 027683 162 D---------------------NRLTGQIPRELVGISSLKVVDVSSNDLC----GTIPTS--GPFEHIPLNKYV 208 (220)
Q Consensus 162 ~---------------------n~l~~~~p~~~~~l~~L~~L~l~~N~l~----g~~p~~--~~l~~l~~l~l~ 208 (220)
. +.++......|.++++|+.+++.+|.+. ..++.. ..+++|+.+.+.
T Consensus 235 ~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 235 ENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred CCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 3 2333334556677778888888776653 113322 445556666554
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.38 E-value=0.00056 Score=57.36 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred ccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 027683 100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 179 (220)
Q Consensus 100 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 179 (220)
.|.++..|+.+.+. +.++..-...|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ ++..-...|.++++|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 45555666666664 3343333455666667777776654 43233445666777777776543 443445566667777
Q ss_pred cEEEeecCc
Q 027683 180 KVVDVSSND 188 (220)
Q Consensus 180 ~~L~l~~N~ 188 (220)
+.+++.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 777776654
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00069 Score=48.02 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=43.4
Q ss_pred cEEEccCCcCC-CCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCC
Q 027683 108 QYLELYKNNIQ-GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166 (220)
Q Consensus 108 ~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (220)
..++-+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888886 34564433 46899999999998555567788899999999999774
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.25 E-value=0.00068 Score=48.07 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=45.7
Q ss_pred EEEcCCCCCC-ccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCC
Q 027683 85 RLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (220)
Q Consensus 85 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 142 (220)
.++.++++++ ..+|..+. .+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6788888886 34554433 47999999999999777777899999999999999875
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.0016 Score=54.07 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=53.1
Q ss_pred EEEEEcCCCCCCccCCcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccC
Q 027683 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (220)
Q Consensus 83 l~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (220)
++.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.+.+..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 444444333 33222334555556666665433 3323334566666666666666666533345566666666666654
Q ss_pred CcCCCCCcccccCCCCCcEEEeec
Q 027683 163 NRLTGQIPRELVGISSLKVVDVSS 186 (220)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~l~~ 186 (220)
+ ++..-...|.++.+|+.+.+..
T Consensus 320 ~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 320 A-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp T-CCEECTTTTTTCTTCCCCCCCT
T ss_pred c-ccEEHHHHhhCCCCCCEEEECC
Confidence 3 4433344566666666666543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.04 E-value=0.0036 Score=51.93 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=76.0
Q ss_pred CcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCC
Q 027683 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGIS 177 (220)
Q Consensus 98 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 177 (220)
...+..+..|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++......|.++++|+.+.+.++.++..-...|.++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 445677788888888765 54444567788888999988754 4434445688999999999999888866667889999
Q ss_pred CCcEEEeecCcCCCcCCCC--CCCCCCCcccc
Q 027683 178 SLKVVDVSSNDLCGTIPTS--GPFEHIPLNKY 207 (220)
Q Consensus 178 ~L~~L~l~~N~l~g~~p~~--~~l~~l~~l~l 207 (220)
+|+.+.+..+ ++ .|... ....+|+.+.+
T Consensus 311 ~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTA-LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEE
Confidence 9999999754 44 44432 34455665554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.02 E-value=0.0027 Score=53.14 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=81.1
Q ss_pred cccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 027683 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISS 178 (220)
Q Consensus 99 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 178 (220)
..|.++..|+.+.+..+..+ .-...|.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++..-...|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 45778889999999766543 4566788999999999974 455344567899999999999865 55455678889999
Q ss_pred CcEEEeecCcCCCcCCCC--CCCCCCCcccccccc
Q 027683 179 LKVVDVSSNDLCGTIPTS--GPFEHIPLNKYVSSF 211 (220)
Q Consensus 179 L~~L~l~~N~l~g~~p~~--~~l~~l~~l~l~~n~ 211 (220)
|+.+.+..+ ++ .|... ....+|+.+++.++.
T Consensus 336 L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 999999654 55 55543 567788888887753
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.78 E-value=0.0037 Score=52.34 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=38.4
Q ss_pred ccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 027683 100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 179 (220)
Q Consensus 100 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 179 (220)
.|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++......|.++.+|+.+++..+ ++..-...|.++.+|
T Consensus 271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 3455555555555444322 223445555555555443 33222334555555555555432 332333445555555
Q ss_pred cEEEeecC
Q 027683 180 KVVDVSSN 187 (220)
Q Consensus 180 ~~L~l~~N 187 (220)
+.+++..|
T Consensus 346 ~~i~lp~~ 353 (394)
T 4fs7_A 346 SNINFPLS 353 (394)
T ss_dssp CEECCCTT
T ss_pred CEEEECcc
Confidence 55555443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.76 E-value=0.0063 Score=50.88 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=63.7
Q ss_pred cccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 027683 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISS 178 (220)
Q Consensus 99 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 178 (220)
..|..+.+|+.+.+..+ ++..-...|.++++|+.+++..+ ++..-...|.++.+|+.+++..+ ++..-...|.++++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 34677888888888765 55445667888888999988754 55344567888889999888766 65455667888888
Q ss_pred CcEEEeecC
Q 027683 179 LKVVDVSSN 187 (220)
Q Consensus 179 L~~L~l~~N 187 (220)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 998888654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.72 E-value=0.00026 Score=53.99 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCCEEEEEcCCC-CCCcc----CCcccCCCCCCcEEEccCCcCCCC----CccccCCCCCCcEEeCcCCcCCCC----Cc
Q 027683 80 DNRVTRLDLGNS-NLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IP 146 (220)
Q Consensus 80 ~~~l~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p 146 (220)
...+++|+|+++ .+.+. +-..+..-..|+.|+|++|.+... +...+..-+.|++|+|+.|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457889999885 77632 233455567899999999998632 233344557899999999998742 22
Q ss_pred ccccCCCCCCEEEccCCc---CCC----CCcccccCCCCCcEEEeecCcC
Q 027683 147 PSLAKLKSLVFLRLNDNR---LTG----QIPRELVGISSLKVVDVSSNDL 189 (220)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~---l~~----~~p~~~~~l~~L~~L~l~~N~l 189 (220)
+.+..-+.|++|+|++|. +.. .+-+.+..-+.|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 335555679999998653 331 1223455567888888876654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.34 E-value=0.0014 Score=49.89 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=63.9
Q ss_pred cCCCCCCcEEEccCC-cCCCC----CccccCCCCCCcEEeCcCCcCCCC----CcccccCCCCCCEEEccCCcCCCC---
Q 027683 101 LGKLEHLQYLELYKN-NIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPSLAKLKSLVFLRLNDNRLTGQ--- 168 (220)
Q Consensus 101 l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--- 168 (220)
+..-+.|++|+|++| .+... +-..+..-+.|+.|+|++|.+... +-+.+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445578999999986 77521 334466678999999999999742 223344558899999999999742
Q ss_pred -CcccccCCCCCcEEEeecCc
Q 027683 169 -IPRELVGISSLKVVDVSSND 188 (220)
Q Consensus 169 -~p~~~~~l~~L~~L~l~~N~ 188 (220)
+-+.+..-+.|++|++++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 23445566789999998653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.70 E-value=27 Score=22.75 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=19.6
Q ss_pred CcccCCCCCCcEEEccCCcCCCCCccccCCCCCCcEEeCcC
Q 027683 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138 (220)
Q Consensus 98 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 138 (220)
...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555543 2223344455555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.46 E-value=28 Score=22.67 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=33.2
Q ss_pred CcCCCCCccccCCCCCCcEEeCcCCcCCCCCcccccCCCCCCEEEccCC
Q 027683 115 NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (220)
Q Consensus 115 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (220)
..++..-...|.++++|+.+.+..+- +..-...|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 34444455678888888888887753 3244567888888888888654
Done!