BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027685
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 71 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 120
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 121 DKRDAEDAMDAMDGAVLDGRELRVQMA 147
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 48 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 97
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFAEENR 128
D DA DA MDG +L GREL V A R
Sbjct: 98 DKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 54 TYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113
TY++ P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+ MDG
Sbjct: 22 TYRT--SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79
Query: 114 LLGRELTVVFAEENRK 129
L GREL V A R+
Sbjct: 80 LDGRELRVQVARYGRR 95
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM G L GR++
Sbjct: 30 EDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRT 89
Query: 122 VFAEENRKKPS 132
+A PS
Sbjct: 90 NWATRKPPAPS 100
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR++
Sbjct: 30 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89
Query: 122 VFAEENRKKPS 132
+A RK P+
Sbjct: 90 NWA--TRKPPA 98
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+ R FG G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V
Sbjct: 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76
Query: 122 VFAEENRKKPSEMRARE 138
+A +PS R+
Sbjct: 77 SYA-----RPSSASIRD 88
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111
++L F Q+GR+ + D TG RG GF+++ +A +A ++G
Sbjct: 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 99
L VRNL + S EDL F +G L +++ P D T +P+GF FV ++ P
Sbjct: 11 LFVRNLSYTS----------SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60
Query: 100 ADAADAKYHMDGYLLLGRELTVV 122
A A +DG + GR L V+
Sbjct: 61 EHAVKAYAEVDGQVFQGRMLHVL 83
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L+ FG+ G + ++ L +D T + RGF F+ + +PADA +A M+G L G+ + V
Sbjct: 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV-- 80
Query: 124 AEENRKKPS 132
E KKPS
Sbjct: 81 --EQAKKPS 87
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
++ + FG G ++ L RD TG+ G+GFV Y DP DA A ++G L + + V
Sbjct: 19 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 78
Query: 122 VFAEENRKKPSEMRAR 137
+A +PS R
Sbjct: 79 SYA-----RPSSASIR 89
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L F FG + DI +P DY T + RGF FV++ DAA A +M+ L GR + V
Sbjct: 29 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88
Query: 124 AEENRKKPS 132
A+ R K S
Sbjct: 89 AKPMRIKES 97
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118
+ L F ++G++ ++ + +D T RGFGFV + + DA DA M+G + GR+
Sbjct: 24 TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83
Query: 119 LTVVFA---EENRKKPS 132
+ V A +NR PS
Sbjct: 84 IRVDQAGKSSDNRSGPS 100
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
++ + FG G ++ L RD TG+ G+GFV Y DP DA A ++G L + + V
Sbjct: 19 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 78
Query: 122 VFAEENRKKPSEMRARE 138
+A +PS R+
Sbjct: 79 SYA-----RPSSASIRD 90
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--LTVVFAE 125
F Q+GR+ + D TG RG GF+++ +A +A ++G LG +TV FA
Sbjct: 111 FSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 170
Query: 126 E 126
Sbjct: 171 N 171
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
LRG F FGR++ I L D TG +G+GF+ + D A A ++G+ L GR + V
Sbjct: 43 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L F FG + DI +P DY T + RGF FV++ DAA A +M+ L GR + V
Sbjct: 80 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139
Query: 124 A 124
A
Sbjct: 140 A 140
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 71 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR++ +A
Sbjct: 30 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L F FG + DI +P DY T + RGF FV++ DAA A +M+ L GR + V
Sbjct: 24 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83
Query: 124 AE 125
A+
Sbjct: 84 AK 85
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L F FG + DI +P DY T + RGF FV++ DAA A +M+ L GR + V
Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81
Query: 124 A 124
A
Sbjct: 82 A 82
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L F FG + DI +P DY T + RGF FV++ DAA A +M+ L GR + V
Sbjct: 19 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 78
Query: 124 A 124
A
Sbjct: 79 A 79
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+L FG +G L+ +++ R+ P GF FV++ DP DAADA +DG L G + V
Sbjct: 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
LRG F FG++ +I L +D TG +G+GF+ + D A A ++G+ L GR + V
Sbjct: 22 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81
Query: 124 AEE 126
E
Sbjct: 82 VTE 84
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+L FG +G L+ +++ R+ P GF FV++ DP DAADA +DG L G + V
Sbjct: 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRDLDGRTLCGCRVRV 142
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119
R DLR FGQFG++ D+ + + +GFGFV + + ADA A+ + G ++ GR++
Sbjct: 42 RDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99
Query: 120 TV 121
V
Sbjct: 100 EV 101
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119
R DLR FGQFG++ D+ + + +GFGFV + + ADA A+ + G ++ GR++
Sbjct: 28 RDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85
Query: 120 TV 121
V
Sbjct: 86 EV 87
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+D++ F FG++K L RD TG+ +G+GF++Y + DA M+ + L G+ L V
Sbjct: 125 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 184
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+ +R F FG +K I + D T + +GF FV+Y P A A M+ +L GR + V
Sbjct: 28 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 87
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA----ADAKYHMD 110
E LR FGQFG +K+ + RD T RGFGFV ++D A A +++ +D
Sbjct: 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 67
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+D++ F FG++K L RD TG+ +G+GF++Y + DA M+ + L G+ L V
Sbjct: 140 DDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+ +R F FG +K I + D T + +GF FV+Y P A A M+ +L GR + V
Sbjct: 43 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
++LR F G ++ L RD G G+GFV Y+ DA A ++G L + + V
Sbjct: 17 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 76
Query: 122 VFA 124
+A
Sbjct: 77 SYA 79
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA----ADAKYHMD 110
E LR FGQFG +K+ + RD T RGFGFV ++D A A +++ +D
Sbjct: 40 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 92
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
++LR F G ++ L RD G G+GFV Y+ DA A ++G L + + V
Sbjct: 17 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 76
Query: 122 VFA 124
+A
Sbjct: 77 SYA 79
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
++LR F G ++ L RD G G+GFV Y+ DA A ++G L + + V
Sbjct: 19 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 78
Query: 122 VFA 124
+A
Sbjct: 79 SYA 81
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
++LR F G ++ L RD G G+GFV Y+ DA A ++G L + + V
Sbjct: 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93
Query: 122 VFA 124
+A
Sbjct: 94 SYA 96
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 90
Query: 123 FAEENR 128
F+ R
Sbjct: 91 FSITKR 96
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118
E ++ F QFG++ ++ L D T +P+GFGFV+ + ++A +D +GR
Sbjct: 13 ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE-MQEESVSEAIAKLDNTDFMGR- 70
Query: 119 LTVVFAEENRKKPSE 133
T+ E N KK E
Sbjct: 71 -TIRVTEANPKKSLE 84
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 28 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 87
Query: 123 FAEENR 128
F+ R
Sbjct: 88 FSITKR 93
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADAA-DAKYH-MDGYLL 114
E LR F Q+G L D + RD T RGFGFV Y ++ DAA +A+ H +DG ++
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD----AKYH 108
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 168
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADAA-DAKYH-MDGYLL 114
E LR F Q+G L D + RD T RGFGFV Y ++ DAA +A+ H +DG ++
Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 83
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD----AKYH 108
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 120 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 167
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 62 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121
Query: 123 FAEENR 128
F+ R
Sbjct: 122 FSITKR 127
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 104
RP++ F Q+G + D L D TG+ RGFGFV Y D ADA D
Sbjct: 99 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVD 143
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA---DAADAKYHMDGYLL 114
++LR FG++G + D+ + +D TG RGFGF+ + P+ + ++ +DG ++
Sbjct: 18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADAA-DAKYH-MDGYLL 114
E LR F Q+G L D + RD T RGFGFV Y ++ DAA +A+ H +DG ++
Sbjct: 29 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 85
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD----AKYH 108
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 122 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 169
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADAA-DAKYH-MDGYLL 114
E LR F Q+G L D + RD T RGFGFV Y ++ DAA +A+ H +DG ++
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 77
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD----AKYH 108
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 114 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 161
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADAA-DAKYH-MDGYLL 114
E LR F Q+G L D + RD T RGFGFV Y ++ DAA +A+ H +DG ++
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD----AKYH 108
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 168
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY--IDPADAA-DAKYH-MDGYLL 114
E LR F Q+G L D + RD T RGFGFV Y ++ DAA +A+ H +DG ++
Sbjct: 26 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 82
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD----AKYH 108
LR F Q+G+++ I + D +G+ RGF FV + D D+ D KYH
Sbjct: 119 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQKYH 166
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E L+ F + G + L D TG+P+G+GF +Y D A A +++G GR L V
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82
Query: 122 VFAEENRKK 130
A + K
Sbjct: 83 DNAASEKNK 91
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFG 92
+ + +LVRN+ + ++R F FG LK + LP+ TG RGFG
Sbjct: 12 KQTTSKILVRNIPFQA----------NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFG 61
Query: 93 FVQYIDPADAADA-KYHMDGYLLLGRELTVVFAEE 126
FV +I DA A L GR L + +A+
Sbjct: 62 FVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D ++ V NL D+ R DL+ F FG + IYL +D TG+ +GF F+
Sbjct: 13 DDNATIRVTNLSEDT----------RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 62
Query: 95 QYIDPADAADAKYHMDGY 112
+ DAA A + G+
Sbjct: 63 SFHRREDAARAIAGVSGF 80
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGE---PR 89
G + L ++NL +FST E L+G F + G +K + +
Sbjct: 1 GSSGSSGLFIKNL---NFST-------TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSM 50
Query: 90 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
GFGFV+Y P A A + G+ + G +L V +E K S
Sbjct: 51 GFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPAS 93
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+D++ F FG++K L RD TG+ +G+GF++Y + DA + + L G+ L V
Sbjct: 124 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSXNLFDLGGQYLRV 183
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+ +R F FG +K I D T + +GF FV+Y P A A + L GR + V
Sbjct: 27 DTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQXNSVXLGGRNIKV 86
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 127
F Q G + + ++P+D TG+ +G+GFV+++ DA A MD L G+ + V A +
Sbjct: 36 FLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95
Query: 128 RKKPS 132
K S
Sbjct: 96 NKNLS 100
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
Length = 101
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+L F +G L+ +++ R+ P GF FV++ DP DA DA +DG ++ G + V
Sbjct: 16 ELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
LR F ++G ++ + + D T + RG+GFV++ + A A ++G+ +L + L V
Sbjct: 58 QLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117
Query: 123 FAEENRKKP 131
A ++P
Sbjct: 118 LAASGHQRP 126
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Daz-Associated Protein 1
Length = 105
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 99
E LR F Q+G + D + +D T + RGFGFV++ DP
Sbjct: 31 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 68
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 99
L V NL S + + ++ + RP FG L+ +L TG+ +G+GF +Y+
Sbjct: 98 LCVANL-PPSLTQQQFEELVRP---------FGSLERCFLVYSERTGQSKGYGFAEYMKK 147
Query: 100 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 137
AA AK + G L R L V + + + P+ + +R
Sbjct: 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSR 185
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
DLR F ++G + D+ + D + RGF FV + + DA +AK +G L GR + V
Sbjct: 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 99
L V NL S + + ++ + RP FG L+ +L TG+ +G+GF +Y+
Sbjct: 96 LCVANL-PPSLTQQQFEELVRP---------FGSLERCFLVYSERTGQSKGYGFAEYMKK 145
Query: 100 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 137
AA AK + G L R L V + + + P+ + +R
Sbjct: 146 DSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSR 183
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 99
L V NL S + + ++ + RP FG L+ +L TG+ +G+GF +Y+
Sbjct: 98 LCVANL-PPSLTQQQFEELVRP---------FGSLERCFLVYSERTGQSKGYGFAEYMKK 147
Query: 100 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 137
AA AK + G L R L V + + + P+ + +R
Sbjct: 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSR 185
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E LR F F ++ D TG RG+GFV + DA +A M G L GR L +
Sbjct: 102 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161
Query: 122 VFA 124
+A
Sbjct: 162 NWA 164
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 50 FSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109
F T ++ + ++++ F +G +K+I+L D TG +G+ V+Y A AK +
Sbjct: 76 FVTSIHEE-AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134
Query: 110 DGYLLLGRELTVVFA 124
+G ++G+ + V +
Sbjct: 135 NGAEIMGQTIQVDWC 149
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E LR F F ++ D TG RG+GFV + DA +A M G L GR L +
Sbjct: 16 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75
Query: 122 VFAEE 126
+A +
Sbjct: 76 NWAAK 80
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118
C +LR F +FG + ++ + D PRGFGF+ + D + D +M + ++G++
Sbjct: 22 CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQAVNMHFHDIMGKK 80
Query: 119 LTVVFAEENRKKPS 132
+ V AE K S
Sbjct: 81 VEVKRAEPRDSKSS 94
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119
R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y DGY G L
Sbjct: 35 RTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91
Query: 120 TVVFAEENRKKPS 132
V F R S
Sbjct: 92 RVEFPRSGRGTGS 104
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 22 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 81
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 22 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 81
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 50 FSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109
F T ++ + ++++ F +G +K+I+L D TG +G+ V+Y A AK +
Sbjct: 30 FVTSIHEE-AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 88
Query: 110 DGYLLLGRELTVVFA 124
+G ++G+ + V +
Sbjct: 89 NGAEIMGQTIQVDWC 103
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 22 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 81
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 37 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96
Query: 122 VFA 124
+
Sbjct: 97 DWC 99
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98
+L V + +D+ +K LR F +G +K I++ +G+PRG+ F++Y
Sbjct: 104 TLFVARVNYDTTESK----------LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153
Query: 99 PADAADAKYHMDGYLLLGRELTV 121
D A H DG + GR + V
Sbjct: 154 ERDMHSAYKHADGKKIDGRRVLV 176
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+DL F G + I + D ++G P+G+ ++++ + ++ DA MD + GR + V
Sbjct: 51 QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAAVAMDETVFRGRTIKV 109
Query: 122 V 122
+
Sbjct: 110 L 110
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 24 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 83
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED+ F ++G +K+I+L D TG +G+ V+Y +A A ++G L+G+ ++V
Sbjct: 38 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97
Query: 122 VFA 124
+
Sbjct: 98 DWC 100
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 53 KTYKSICR-----------PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 101
KTY CR ED + F ++G ++++ RD RGFGF++
Sbjct: 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTL 70
Query: 102 AADAKYHMDGYLLLGRELTVVFA 124
A AK +DG +L R L + FA
Sbjct: 71 AEIAKAELDGTILKSRPLRIRFA 93
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVFAE 125
FG++G + + RD TG PRG FV+Y +A +A ++ + G + L+V AE
Sbjct: 34 FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE 93
Query: 126 ENRK 129
E+ K
Sbjct: 94 EHGK 97
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E LR F FG + + + G +GFGFV + P +A A M+G ++ + L V
Sbjct: 30 ERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87
Query: 122 VFA---EENRKKPS 132
A EE + PS
Sbjct: 88 ALAQRKEERQSGPS 101
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVFAE 125
FG++G + + RD TG PRG FV+Y +A +A ++ + G + L+V AE
Sbjct: 121 FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE 180
Query: 126 ENRK 129
E+ K
Sbjct: 181 EHGK 184
>pdb|2KRB|A Chain A, Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide
Length = 81
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114
F +FG++ + + P + G+ +G+ F++Y PA A DA + DGY L
Sbjct: 28 FSKFGKITNDFYPEE--DGKTKGYIFLEYASPAHAVDAVKNADGYKL 72
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA---DAKYH-MDGYLL 114
+DL+ F +FG + D + D TG RGFGF+ + D A D K H +DG ++
Sbjct: 26 KDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI 82
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98
+L V + +D+ +K LR F +G +K I++ +G+PRG+ F++Y
Sbjct: 104 TLFVARVNYDTTESK----------LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153
Query: 99 PADAADAKYHMDGYLLLGRELTV 121
D A H DG + GR + V
Sbjct: 154 ERDMHSAYKHADGKKIDGRRVLV 176
>pdb|1WF2|A Chain A, Solution Structure Of Rrm Domain In Hnrpc Protein
Length = 98
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 58 ICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117
+ + D+ F ++G++ + + GF FVQY++ +A A DG ++ G+
Sbjct: 27 VVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVAGEDGRMIAGQ 78
Query: 118 ELTVVFAEE---NRKKPSE 133
L + A E NR PS
Sbjct: 79 VLDINLAAEPKVNRSGPSS 97
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA--DAADAK--YHMDGYLL 114
E LR + Q+G+L D + RD + RGFGFV + A DAA A + +DG ++
Sbjct: 42 ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVV 98
>pdb|2NLW|A Chain A, Solution Structure Of The Rrm Domain Of Human Eukaryotic
Initiation Factor 3b
Length = 105
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114
F +FG++ + + P + G+ +G+ F++Y PA A DA + DGY L
Sbjct: 42 FSKFGKITNDFYPEE--DGKTKGYIFLEYASPAHAVDAVKNADGYKL 86
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114
C E+L G +KD+ L + G+P+G +V+Y + + A+ A MDG +
Sbjct: 29 CTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI 83
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 68 FGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 120
F +G++K I +P + + +G+ +V++ +P +A A HMDG + G+E+T
Sbjct: 25 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L F G + + + D ++G P+GF ++++ D ++ +D L GR++ V
Sbjct: 20 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK-ESVRTSLALDESLFRGRQIKV 78
Query: 122 VFAEENR 128
+ NR
Sbjct: 79 IPKRTNR 85
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 23/110 (20%)
Query: 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR 89
G G L VRNL + E L F QFG+L+ + +DY
Sbjct: 4 GSSGMAKVKVLFVRNLAN----------TVTEEILEKAFSQFGKLERVKKLKDY------ 47
Query: 90 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 139
F+ + + A A M+G L G + +VFA KP + + +ER
Sbjct: 48 --AFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA-----KPPDQKRKER 90
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L F G + + + D ++G P+GF ++++ D ++ +D L GR++ V
Sbjct: 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK-ESVRTSLALDESLFRGRQIKV 79
Query: 122 VFAEENR 128
+ NR
Sbjct: 80 IPKRTNR 86
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 96
ED++ F QFG++ D L D T RGFGFV +
Sbjct: 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 48
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E++R F ++G+ ++++ +D +GFGF++ A AK +D L G++L V
Sbjct: 30 EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83
Query: 122 VFA 124
FA
Sbjct: 84 RFA 86
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E++R F ++G+ ++++ +D +GFGF++ A AK +D L G++L V
Sbjct: 37 EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 90
Query: 122 VFA 124
FA
Sbjct: 91 RFA 93
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP---ADAADAKYHMDG 111
E +R FG FG ++ I LP D T + RGF F+ + + + KYH G
Sbjct: 16 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 68
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY 96
+DL+ F +FG + D L D TG RGFGFV +
Sbjct: 14 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 48
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP---ADAADAKYHMDG 111
E +R FG FG ++ I LP D T + RGF F+ + + + KYH G
Sbjct: 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 77 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKP 131
IYL D TG+P+G V Y DP A A DG G +L V A RKKP
Sbjct: 55 IYL--DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA---RKKP 104
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR 89
G G + VRNL D F+ K L+ F + G + +Y G+ +
Sbjct: 1 GSSGSSGACQIFVRNLPFD-FTWKM---------LKDKFNECGHV--LYADIKMENGKSK 48
Query: 90 GFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
G G V++ P A A M+G L GRE+ V
Sbjct: 49 GCGVVKFESPEVAERACRMMNGMKLSGREIDV 80
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98
+DL+ F FG + + + +D TG +GFGFV++ +
Sbjct: 30 QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 66
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113
+ L FG++G + + RD TG PRG FV+Y +A +A ++ +
Sbjct: 104 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 82 DYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
D TG +GFGFV + DA AK M+ + G ++T+ +A
Sbjct: 47 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89
>pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118
C ++LR F + GR+ + + +DY FV ADA A ++G + G+
Sbjct: 21 CTSQELRSLFERRGRVIECDVVKDY--------AFVHMEKEADAKAAIAQLNGKEVKGKR 72
Query: 119 LTVVFAEENRKKP 131
+ V + + +KK
Sbjct: 73 INVELSTKGQKKS 85
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 62 EDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAA---DAKYHMDGYLLLGR 117
+D+RG G + +++ L R+ +G+ RGF FV++ DA +A H +LG+
Sbjct: 16 DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH--SLNILGQ 73
Query: 118 ELTVVFAE 125
++++ +++
Sbjct: 74 KVSMHYSD 81
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119
R E L F Q G L + + +D G+P+ FGFV + P + A ++G L GR +
Sbjct: 29 REEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87
Query: 120 TV 121
V
Sbjct: 88 NV 89
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--LTVVFA 124
F Q+GR+ + D TG RG GF+++ +A +A ++G LG +TV FA
Sbjct: 22 FSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 80
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG 92
G + + VRNL D F+ K L+ F + G + +Y G+ +G G
Sbjct: 1 GSSGSSGIFVRNLPFD-FTWKM---------LKDKFNECGHV--LYADIKMENGKSKGCG 48
Query: 93 FVQYIDPADAADAKYHMDGYLLLGRELTV 121
V++ P A A M+G L GRE+ V
Sbjct: 49 VVKFESPEVAERACRMMNGMKLSGREIDV 77
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
DL F ++G++ + + +D T + +G F+ ++D A + ++ L GR +
Sbjct: 31 NDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90
Query: 122 VFA 124
A
Sbjct: 91 SIA 93
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
+DL F FG + + D T + FGFV Y +P A A M+G+ + + L V
Sbjct: 40 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 71 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 25 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 75
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DL F +F K + TG RG F+ + + A A + ++GY L G+ L +
Sbjct: 41 DLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100
Query: 123 FAEENRKKPS 132
F + +++ S
Sbjct: 101 FGKNKKQRSS 110
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 71 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 118 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 71 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 120 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 170
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 71 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
FG LK L +D TG +G+ F +Y+D A ++G L ++L V
Sbjct: 138 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188
>pdb|2DIT|A Chain A, Solution Structure Of The Rrm_1 Domain Of Hiv Tat Specific
Factor 1 Variant
Length = 112
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
EDLR +FG+++ + L + P G V + DP +A +DG GR++T
Sbjct: 41 EDLRVECSKFGQIRKLLL----FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 96
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119
RP DL F G+++D+ + D + +G +V++ + + + G LLG +
Sbjct: 38 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLTGQRLLGVPI 96
Query: 120 TVVF--AEENR 128
V AE+NR
Sbjct: 97 IVQASQAEKNR 107
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
F Q G K + ++ + +P + FV++ + DAA A M+G +LG+E+ V +A
Sbjct: 36 FSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 106
+DL+ F +FG++ ++ + +D +TG +G F+ Y + A A+
Sbjct: 28 KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 68 FGQFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH-MDGYLLLGRELTVVFAE 125
F FG L+ + RD TG +G+ F+ + DA+DA M+G L R +TV +A
Sbjct: 26 FSAFGVILQTPKIMRDPDTGNSKGYAFINFAS-FDASDAAIEAMNGQYLCNRPITVSYAF 84
Query: 126 ENRKKPS 132
+ K S
Sbjct: 85 KKDSKGS 91
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DL G LK ++ P+ TG +G+ F+++ D +A A +++GY L R L
Sbjct: 23 DLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 79
Query: 123 FAEEN 127
++ +
Sbjct: 80 YSSNS 84
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DL G LK ++ P+ TG +G+ F+++ D +A A +++GY L R L
Sbjct: 21 DLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77
Query: 123 FAEEN 127
++ +
Sbjct: 78 YSSNS 82
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DL G LK ++ P+ TG +G+ F+++ D +A A +++GY L R L
Sbjct: 22 DLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 78
Query: 123 FAEEN 127
++ +
Sbjct: 79 YSSNS 83
>pdb|3E35|A Chain A, Actinobacteria-Specific Protein Of Unknown Function,
Sco1997
Length = 325
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 80 PRDYYTGEPRGFGFVQYIDPADAAD--AKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 137
P+D YT EP+G V ++A YH DGY+ G + + P ++ AR
Sbjct: 4 PQDLYTWEPKGLAVVDXALAQESAGLVXLYHFDGYIDAGETGDQIVDQVLDSLPHQVVAR 63
>pdb|2DHG|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
In Trna Selenocysteine Associated Protein
Length = 104
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 85 TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE---LTVVFAEENRKKPSE 133
TG +G+GFV++ D + A G + LG + L+V + +R KP E
Sbjct: 47 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVE 98
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 102
LR F FG +++ + D TG+ RG+GFV D A A
Sbjct: 34 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 72
>pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98
E+L+ F Q+G + D+++P+ + R F FV + D
Sbjct: 26 EELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFAD 57
>pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--DPADAADAKYH 108
+DL+ F +FGR+ ++ + +D TG +G F+ Y D A A + H
Sbjct: 30 QDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALH 78
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111
E + F + G +K I + D GF FV+Y ADA +A +++G
Sbjct: 53 EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
+L FG FG +K++ + GF FV++ + AA A + G + L VV
Sbjct: 20 ELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 71
Query: 123 FA 124
++
Sbjct: 72 YS 73
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
+L FG FG +K++ + GF FV++ + AA A + G + L VV
Sbjct: 47 ELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98
Query: 123 FA 124
++
Sbjct: 99 YS 100
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 31 GRGRDLPTSLLVR--NLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEP 88
G G+ +P ++ V ++R D ++R F ++G +K++ + D TG
Sbjct: 4 GSGKIMPNTVFVGGIDVRMDE------------TEIRSFFARYGSVKEVKIITDR-TGVS 50
Query: 89 RGFGFVQYIDPADA 102
+G+GFV + + D
Sbjct: 51 KGYGFVSFYNDVDV 64
>pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98
++LR F Q+G + D+++P+ + R F FV + D
Sbjct: 20 DELREFFSQYGDVMDVFIPKPF-----RAFAFVTFAD 51
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 102
++R F ++G +K++ + D TG +G+GFV + + D
Sbjct: 25 EIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDV 63
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 102
++R F ++G +K++ + D TG +G+GFV + + D
Sbjct: 25 EIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDV 63
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 108 HMDGYLLLGRELTVVFAEENRKKPSEM 134
H DG+LL+G + VFAE K PS++
Sbjct: 70 HADGFLLIGEKKVSVFAE---KDPSQI 93
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 108 HMDGYLLLGRELTVVFAEENRKKPSEM 134
H DG+LL+G + VFAE K PS++
Sbjct: 62 HADGFLLIGEKKVSVFAE---KDPSQI 85
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107
ED G FG +DIY DYY +G V+++ P D +
Sbjct: 160 EDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 204
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107
ED G FG +DIY DYY +G V+++ P D +
Sbjct: 160 EDFTVKIGDFGMTRDIY-ETDYYRKGGKGLLPVRWMSPESLKDGVF 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.144 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,802,697
Number of Sequences: 62578
Number of extensions: 162134
Number of successful extensions: 421
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 158
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)