BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027685
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 220 bits (560), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 153/226 (67%), Positives = 163/226 (72%), Gaps = 23/226 (10%)
Query: 1 MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICR 60
MRGRSY+ PSPPR YGRR RSPSPRG YGGR RDLPTSLLVRNLRHD CR
Sbjct: 1 MRGRSYT--PSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHD----------CR 48
Query: 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 120
EDLR F QFG +KDIYLPRDYYTG+PRGFGFVQ++DPADAADAK+HMDGYLLLGRELT
Sbjct: 49 QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 108
Query: 121 VVFAEENRKKPSEMRARERFRSRSYDGRRS-----PPRYSRSPHYARGYSRSPDYYSPPP 175
VVFAEENRKKP+EMRARER R D RR+ S P R SRS DYYSPPP
Sbjct: 109 VVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPP 168
Query: 176 RRGRDSRSISPRYRRYR-ERSYSRSPYGS----RSYSPSRSRSRSL 216
RR RSISPR RY RSYSRSP RS +P R +SRSL
Sbjct: 169 RR-HHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 10/102 (9%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+
Sbjct: 10 TSLFIRNV----------ADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 59
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 139
D DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 60 DVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL VRN+ D+ R EDLR FG++G + D+Y+P D+YT PRGF +VQ+
Sbjct: 10 TSLFVRNVADDT----------RSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 138
D DA DA +++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL VRN+ D+ R EDLR FG++G + D+Y+P D+YT PRGF +VQ+
Sbjct: 10 TSLFVRNVADDT----------RSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 138
D DA DA +++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97
TSL V NL TY++ P+ LR F ++GR+ D+Y+PRD YT E RGF FV++
Sbjct: 14 TSLKVDNL--------TYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 98 DPADAADAKYHMDGYLLLGRELTVVFA 124
D DA DA MDG +L GREL V A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG 92
GR P + L+ D+ + +T P+ LR F ++GR+ D+Y+PR+ +T PRGF
Sbjct: 4 GRPPPDVDGMITLKVDNLTYRTS-----PDSLRRVFEKYGRVGDVYIPREPHTKAPRGFA 58
Query: 93 FVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
FV++ D DA DA+ MDG L GREL V A
Sbjct: 59 FVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR 89
GG R P + +L+ D+ S +T P DLR F ++G + D+++PRD Y+ + +
Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTT-----PNDLRRTFERYGDIGDVHIPRDKYSRQSK 60
Query: 90 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 128
GFGFV++ + DA A DG L+ GREL V A+ +R
Sbjct: 61 GFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDR 99
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
F QFG LK++ L R+ TG R +GF+++++ DA A+ M+ YLL+G L V
Sbjct: 111 FAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQV 164
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + + L F +FGR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETSEKV-----LEAYFSKFGRISEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFA 124
Y +P DA DA M+G L G+ + V A
Sbjct: 55 TYENPGDAKDAAREMNGKPLDGKPIKVEQA 84
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 122
DL+ F +FG++ + L D TG + FGFV + + DA AK L G+ +
Sbjct: 128 DLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVRAKEECQDLQLHGKSIRTD 187
Query: 123 FAEENRKKPSEMRARERFRSRSYDGRRSPPRYS 155
F+ KKP E + F + YD RRSPPR+S
Sbjct: 188 FSAT--KKPHEPTPGKYFGNPRYDSRRSPPRFS 218
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ +I L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEILLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V
Sbjct: 81 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 140
Query: 122 VFA 124
+A
Sbjct: 141 SYA 143
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 312 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 367
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111
++L F Q+GR+ + D TG RG GF+++ +A +A ++G
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLP 80
PSP G D T+L+V L + E+ R FG G ++ L
Sbjct: 23 NCPSPM-QTGAATDDSKTNLIVNYLPQN----------MTQEEFRSLFGSIGEIESCKLV 71
Query: 81 RDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDSFSTKTYKSICRPED 63
P PP R+ + G G ++P + V NL DS + ++
Sbjct: 256 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQ------- 308
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L GPFG +K I RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 309 LFGPFGAVNNVKVI---RDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 365
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K S+ + ++S
Sbjct: 199 TVKFANNPSQKSSQALLSQLYQS 221
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM G L GR++
Sbjct: 128 EDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRT 187
Query: 122 VFAEENRKKPSEMRARE 138
+A RK P+ +E
Sbjct: 188 NWA--TRKPPAPKSTQE 202
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLP 80
PSP G D T+L+V L + E+ R FG G ++ L
Sbjct: 30 NCPSPM-QTGATTDDSKTNLIVNYLPQN----------MTQEEFRSLFGSIGEIESCKLV 78
Query: 81 RDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 79 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDSFSTKTYKSICRPED 63
P PP R+ + G G ++P + V NL DS + ++
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQ------- 315
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L GPFG +K I RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 316 LFGPFGAVNNVKVI---RDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 146 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K S+ + ++S
Sbjct: 206 TVKFANNPSQKSSQALLSQLYQS 228
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRP 61
G + + + + P SP G+ D T+L+V L +
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNM----------TQ 52
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V
Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112
Query: 122 VFA 124
+A
Sbjct: 113 SYA 115
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K ++ + ++S
Sbjct: 199 TVKFANNPSQKTNQAILSQLYQS 221
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRP 61
G + + + + P SP G+ D T+L+V L +
Sbjct: 7 NGPTCNNTANGPTTINNNCSSPVDSGNT----EDSKTNLIVNYLPQNM----------TQ 52
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V
Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112
Query: 122 VFA 124
+A
Sbjct: 113 SYA 115
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K ++ + ++S
Sbjct: 199 TVKFANNPSQKTNQAILSQLYQS 221
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 2 RGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRP 61
G + + + + P SP G+ D T+L+V L +
Sbjct: 7 NGPTCNNTANGPTTVNNNCSSPVDSGNT----EDSKTNLIVNYLPQNM----------TQ 52
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V
Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112
Query: 122 VFA 124
+A
Sbjct: 113 SYA 115
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 297 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K ++ + ++S
Sbjct: 199 TVKFANNPSQKTNQAILSQLYQS 221
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM G L GR++
Sbjct: 111 EDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRT 170
Query: 122 VFAEENRKKPSEMRARER 139
+A RK P+ +E
Sbjct: 171 NWA--TRKPPAPKSTQEN 186
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 21 RSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLP 80
PSP G D T+L+V L + E+ R FG G ++ L
Sbjct: 35 NCPSPM-QTGAATDDSKTNLIVNYLPQN----------MTQEEFRSLFGSIGEIESCKLV 83
Query: 81 RDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124
RD TG+ G+GFV YIDP DA A ++G L + + V +A
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 10 PSPPRDYGRRYRSPSPRGHYGGRGRDLP------TSLLVRNLRHDSFSTKTYKSICRPED 63
P PP R+ + G G ++P + V NL DS + ++
Sbjct: 268 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQ------- 320
Query: 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
L GPFG +K I RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 321 LFGPFGAVNNVKVI---RDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 151 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K S+ + ++S
Sbjct: 211 TVKFANNPSQKSSQALLSQLYQS 233
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+L+ FG G ++ L RD TG+ G+GFV YIDP DA A ++G L + + V
Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112
Query: 122 VFA 124
+A
Sbjct: 113 SYA 115
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
++L F Q+GR+ + D TG RG GF+++ +A +A ++G G +
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 120 TVVFAEENRKKPSEMRARERFRS 142
TV FA +K ++ + ++S
Sbjct: 199 TVKFANNPSQKTNQAILSQLYQS 221
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR++
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 122 VFAEENRKKPSEMRARE-RFRSRSYDGRRSPPRYSRSPHYARGYS 165
+A RK P+ E + SYD S + Y G +
Sbjct: 180 NWA--TRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVT 222
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K +++ FG++GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGLNTET-NEKALETV---------FGKYGRIVEVLLIKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M G L GR++
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 122 VFAEENRKKPSEMRARE-RFRSRSYDGRRSPPRYSRSPHYARGYS 165
+A RK P+ E + SYD + S Y G +
Sbjct: 180 NWA--TRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVT 222
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ +I L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEILLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA D M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDVARDMNGKSLDGKAIKV----EQATKPS 88
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L +T+T + L FG++GR+ +I L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGL-----NTETNEKA-----LEAVFGKYGRIVEILLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA D M+G L G+ + V E KPS
Sbjct: 55 TFESPADAKDVARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K K++ FG+ G + ++ L +D T + RGF F+
Sbjct: 5 DHPGKLFIGGLNRET-NEKMLKAV---------FGKHGPISEVLLIKDR-TSKSRGFAFI 53
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRY 154
+ +PADA +A M+G L G+ + V E KKPS F+S GRR PP
Sbjct: 54 TFENPADAKNAAKDMNGTSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPAS 99
Query: 155 SRS 157
SR+
Sbjct: 100 SRN 102
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K K++ FG+ G + ++ L +D T + RGF F+
Sbjct: 5 DHPGKLFIGGLNRET-NEKMLKAV---------FGKHGPISEVLLIKDR-TSKSRGFAFI 53
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRY 154
+ +PADA +A M+G L G+ + V E KKPS F+S GRR PP
Sbjct: 54 TFENPADAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPAS 99
Query: 155 SRS 157
SR+
Sbjct: 100 SRN 102
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K K++ FG+ G + ++ L +D T + RGF F+
Sbjct: 5 DHPGKLFIGGLNRET-NEKMLKAV---------FGKHGPISEVLLIKDR-TSKSRGFAFI 53
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRY 154
+ +PADA +A M+G L G+ + V E KKPS F+S GRR PP
Sbjct: 54 TFENPADAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPAS 99
Query: 155 SRS 157
SR+
Sbjct: 100 SRN 102
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K K++ FG+ G + ++ L +D T + RGF F+
Sbjct: 5 DHPGKLFIGGLNRET-NEKMLKAV---------FGKHGPISEVLLIKDR-TSKSRGFAFI 53
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRY 154
+ +PADA +A M+G L G+ + V E KKPS F+S GRR PP
Sbjct: 54 TFENPADAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPAS 99
Query: 155 SRS 157
SR+
Sbjct: 100 SRN 102
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K K++ FG+ G + ++ L +D T + RGF F+
Sbjct: 5 DHPGKLFIGGLNRET-NEKMLKAV---------FGKHGPISEVLLIKDR-TSKSRGFAFI 53
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRY 154
+ +PADA +A M+G L G+ + V E KKPS F+S GRR PP
Sbjct: 54 TFENPADAKNAAKDMNGKSLHGKAIKV----EQAKKPS-------FQS---GGRRRPPAS 99
Query: 155 SRS 157
SR+
Sbjct: 100 SRN 102
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L V L + KT + + E FG++G + ++L +D T + RGF FV
Sbjct: 5 DRPEKLFVGGL-----NLKTDEKALKAE-----FGKYGHIIKVFLIKDRKTNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFA-----EENRKKPSE--MRARERFRSRSYDG 147
+ PADA A M+G L G+ + V E +R P +R RF R+ G
Sbjct: 55 TFESPADAKAAARDMNGKYLDGKAIMVAQTIKPAFESSRWVPPTPGSGSRSRFSHRTRGG 114
Query: 148 RRSPPR 153
SP R
Sbjct: 115 GSSPQR 120
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 99
+ VRNL S+STK EDL F +FG++ +I++P DY + + +G F+ Y+ P
Sbjct: 363 IFVRNL---SYSTKE-------EDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIP 412
Query: 100 ADAADAKYHMDGYLLLGRELTVV 122
+A A MDG + GR + V+
Sbjct: 413 ENAVQALNDMDGKVFQGRLIHVL 435
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPR 89
GG+ + ++++NL +S T K I R F +G ++ + +P+ G R
Sbjct: 787 GGQPNKPSSKIIIKNLPFES----TIKEI------RKLFTAYGEIQSVRIPKKPNGGH-R 835
Query: 90 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 137
GFGFV+++ +A +A + GR L + +AE++ K E+R +
Sbjct: 836 GFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQD-KNIDELREK 882
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98
S+ V NL +D DL F ++G +K + LP D TG RGFGFV+
Sbjct: 2 SIYVGNLSYD----------VSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEA 51
Query: 99 PADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 135
A+ A +DG +GR+L V N+ KP E R
Sbjct: 52 DAEETAAIEALDGAEWMGRDLKV-----NKAKPRENR 83
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L + KT + + E FG++G + ++L +D T + RGF FV
Sbjct: 5 DRPEKLFIGGL-----NLKTDEKALKAE-----FGKYGHIIKVFLMKDRKTNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM-------RARERFRSRSYDG 147
+ PADA A M+G L G+ + V + K S +R RF R+ G
Sbjct: 55 TFESPADAKAAARDMNGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGG 114
Query: 148 RRSPPR 153
SP R
Sbjct: 115 GSSPQR 120
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ + K K++ FG+ G + ++ L +D T + RGF F+
Sbjct: 5 DHPGKLFIGGLNRET-NEKMLKAV---------FGKHGPISEVLLIKDR-TSKSRGFAFI 53
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRY 154
+ +PADA +A M+G L G+ + V E +KPS F+S GRR PP
Sbjct: 54 TFENPADAKNAAKDMNGKSLHGKAIKV----EQAQKPS-------FQS---GGRRRPPAS 99
Query: 155 SRS 157
SR+
Sbjct: 100 SRN 102
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118
R + L+ FG+FG + + L RD T + RGF F+ + PADA +A M+G +L G+
Sbjct: 19 TRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKR 78
Query: 119 LTVVFAEENRKKPSEMRARERFRSRSYDGRRSPPRYSRSPHYARGYSR 166
+ V A ++PS + + + R PP +SR+ RG SR
Sbjct: 79 IKVKQA----RRPSSLESGSKKR---------PPSFSRT----RGASR 109
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121
E+ + FG G ++ L RD TG+ G+GFV Y+DP DA A ++G L + + V
Sbjct: 48 EEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV 107
Query: 122 VFA 124
+A
Sbjct: 108 SYA 110
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 68 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 127
FG FG + ++ + RD+ T + +GFGFV + +AA A ++GY L R L V F
Sbjct: 285 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 344
Query: 128 RKK 130
+ K
Sbjct: 345 QHK 347
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--L 119
+++ F Q+GR+ + D TG RG GF+++ +A +A ++G LG +
Sbjct: 134 KEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPI 193
Query: 120 TVVFAEENRKKPSEMRARERFRSRS 144
TV FA +K + +++ +
Sbjct: 194 TVKFANNPSQKTGQALLTHLYQTTA 218
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 94
D P L + L ++ C+ +GR+ ++ L +D T + RGF FV
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCK----------YGRVVEVLLMKDRETNKSRGFAFV 54
Query: 95 QYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 132
+ PADA DA ++G L G+ + V E KPS
Sbjct: 55 TFESPADAKDAARELNGKALDGKPIKV----EQATKPS 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,679,919
Number of Sequences: 539616
Number of extensions: 4400687
Number of successful extensions: 17466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 421
Number of HSP's that attempted gapping in prelim test: 10822
Number of HSP's gapped (non-prelim): 4099
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)